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NameTDescription # Ann.AuthorMaintainerUpdated_atStatus

461-480 / 592 show all
PA-LLM 🖐️ LLMs for biomedical text summarisation0Nico Colic2024-01-19Developing
PMA_Manual Manually annotated examples of medical device PMA approval statements204Stefano Rensitherightstef2023-11-27Developing
LitCoin-Disease-MeSH MeSH C and F03, plus false negatives that appear in two or more documents in LitCoin-entities3.56 Kyucca2023-11-29Testing
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 78.9 KGENIA ProjectYue Wang2023-11-29Released
bayaba nalee7Nakyolee2023-11-29
LitCovid-PubTatorCentral Named-entities for the documents in the LitCovid dataset. Annotations were automatically predicted by the PubTatorCentral tool (https://www.ncbi.nlm.nih.gov/research/pubtator/)4.64 Kzebet2023-11-27Released
GlycoBiology-NCBITAXON NCBITAXON-based annotation to GlycoBiology abstracts32.7 Kshuo502023-11-29Testing
Biotea NCBO annotation on full text for PMC articles. Currently including only a small set of 2811 articles corresponding to those supporting curated diesease-protein annotation from UniProt and with machine-processable full text.894 KL. Garcia2023-11-24Developing
bionlp-st-ge-2016-test-tees NER and event extraction produced by TEES (with the default GE11 model) for the 14 full papers used in the BioNLP 2016 GE task test corpus.9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees NER and event extraction produced by TEES (with the default GE11 model) for the 20 full papers used in the BioNLP 2016 GE task reference corpus.14.6 KNico Colic Nico Colic2023-11-29Released
EDAN70 NLP tagging of articles concerning covid19.0fettmedknaoz2023-11-29
tagtog OpenAccess annotations coming from tagtog.net0tagtogtagtog2015-02-23Developing
PubCasesORDO ORDO annotation in PubCases865 KToyofumi Fujiwara2023-11-24Beta
OryzaGP_2021_v2 OryzaGP_2021_v2 will use a second annotator 208 Klarmande2023-11-29Developing
OryzaGP_2020 OryzaGP is a dataset of pubmed abstract related to Oryza sativa species0Pierre Larmandelarmande2023-11-29Developing
Grays_part2 Osteology w/o 218.63 Kokubo2023-11-29Testing
LitCovid-v1-docs A comprehensive literature resource on the subject of Covid-19 is collected by NCBI: https://www.ncbi.nlm.nih.gov/research/coronavirus/ The LitCovid project@PubAnnotation is a collection of the titles and abstracts of the LitCovid dataset, for the people who want to perform text mining analysis. Please note that if you produce some annotation to the documents in this project, and contribute the annotation back to PubAnnotation, it will become publicly available together with contribution from other people. If you want to contribute your annotation to PubAnnotation, please refer to the documentation page: http://www.pubannotation.org/docs/submit-annotation/ The list of the PMID is sourced from here The 6 entries of the following PMIDs could not be included because they were not available from PubMed:32161394, 32104909, 32090470, 32076224, 32161394 32188956, 32238946. Below is a notice from the original LitCovid dataset: PUBLIC DOMAIN NOTICE National Center for Biotechnology Information This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose. Please cite the authors in any work or product based on this material : Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 0Jin-Dong Kim2023-11-29Released
LitCovid-sample-docs A comprehensive literature resource on the subject of Covid-19 is collected by NCBI: https://www.ncbi.nlm.nih.gov/research/coronavirus/ The LitCovid project@PubAnnotation is a collection of the titles and abstracts of the LitCovid dataset, for the people who want to perform text mining analysis. Please note that if you produce some annotation to the documents in this project, and contribute the annotation back to PubAnnotation, it will become publicly available together with contribution from other people. If you want to contribute your annotation to PubAnnotation, please refer to the documentation page: http://www.pubannotation.org/docs/submit-annotation/ The list of the PMID is sourced from here Below is a notice from the original LitCovid dataset: PUBLIC DOMAIN NOTICE National Center for Biotechnology Information This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the author's official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction. Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose. Please cite the authors in any work or product based on this material : Chen Q, Allot A, & Lu Z. (2020) Keep up with the latest coronavirus research, Nature 579:193 0Jin-Dong Kim2023-11-29Uploading
CORD-19_All_docs All the documents in the whole CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.0Jin-Dong Kim2023-11-29Released
UBERON-AE Annotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.859 KDBCLSJin-Dong Kim2023-11-29Developing
NameT# Ann.AuthorMaintainerUpdated_atStatus

461-480 / 592 show all
PA-LLM 0Nico Colic2024-01-19Developing
PMA_Manual 204Stefano Rensitherightstef2023-11-27Developing
LitCoin-Disease-MeSH 3.56 Kyucca2023-11-29Testing
GENIAcorpus 78.9 KGENIA ProjectYue Wang2023-11-29Released
bayaba 7Nakyolee2023-11-29
LitCovid-PubTatorCentral 4.64 Kzebet2023-11-27Released
GlycoBiology-NCBITAXON 32.7 Kshuo502023-11-29Testing
Biotea 894 KL. Garcia2023-11-24Developing
bionlp-st-ge-2016-test-tees 9.17 KNico ColicNico Colic2023-11-29Released
bionlp-st-ge-2016-reference-tees 14.6 KNico Colic Nico Colic2023-11-29Released
EDAN70 0fettmedknaoz2023-11-29
tagtog 0tagtogtagtog2015-02-23Developing
PubCasesORDO 865 KToyofumi Fujiwara2023-11-24Beta
OryzaGP_2021_v2 208 Klarmande2023-11-29Developing
OryzaGP_2020 0Pierre Larmandelarmande2023-11-29Developing
Grays_part2 8.63 Kokubo2023-11-29Testing
LitCovid-v1-docs 0Jin-Dong Kim2023-11-29Released
LitCovid-sample-docs 0Jin-Dong Kim2023-11-29Uploading
CORD-19_All_docs 0Jin-Dong Kim2023-11-29Released
UBERON-AE 859 KDBCLSJin-Dong Kim2023-11-29Developing