| vtt_friends_s01e09 | | | 0 | | donghwan kim | 2023-11-29 | | |
| bionlp-ost-19-BB-norm-train | | | 2.45 K | | ldeleger | 2023-11-29 | Developing | |
| bionlp-st-2016-SeeDev-training | | Entities and event annotations from the training set of the BioNLP-ST 2016 SeeDev task.
SeeDev task focuses on seed storage and reserve accumulation on the model organism, Arabidopsis thaliana. The SeeDev task is based on the knowledge model Gene Regulation Network for Arabidopsis (GRNA) that meets the needs of text-mining (i.e. manual annotation of texts and automatic information extraction), experimental data indexing and retrieval and reuse in other plant systems. It is also expected to meet the requirements of the integration of the text knowledge with knowledge derived from experimental data in view of modeling in systems biology.
GRNA model defines 16 different types of entities, and 22 types of event (in five sets of event types) that may be combined in complex events.
For more information, please refer to the task website
All annotations :
Train set
Development set
Test set (without events)
| 35 | | EstelleChaix | 2023-11-28 | Released | |
| Goldhamster2_CellLineAnn | | | 618 | | zebet | 2023-11-29 | Developing | |
| Minna_de_Honkoku | | An annotation project for Minna de Honkoku, a crowdsourced transcription project for historical Japanese documents.. | 204 | Yuta Hashimoto | yhashimoto | 2023-11-28 | Developing | |
| blah6_medical_device | | BLAH6 hackathon project to annotate medical device indications in premarket approval statement summaries. The documents in this project serve as a corpus of premarket approval (PMA) statements that have undergone quality control. In particular, we have (1) removed non-ascii characters, (2) fixed some text segmentation errors, and (3) fixed some capitalization errors. | 0 | Stefano Rensi | therightstef | 2023-11-29 | Beta | |
| pubmed-sentences-benchmark | | A benchmark data for text segmentation into sentences.
The source of annotation is the GENIA treebank v1.0.
Following is the process taken.
began with the GENIA treebank v1.0.
sentence annotations were extracted and converted to PubAnnotation JSON.
uploaded. 12 abstracts met alignment failure.
among the 12 failure cases, 4 had a dot('.') character where there should be colon (':'). They were manually fixed then successfully uploaded: 7903907, 8053950, 8508358, 9415639.
among the 12 failed abstracts, 8 were "250 word truncation" cases. They were manually fixed and successfully uploaded. During the fixing, manual annotations were added for the missing pieces of text.
30 abstracts had extra text in the end, indicating copyright statement, e.g., "Copyright 1998 Academic Press." They were annotated as a sentence in GTB. However, the text did not exist anymore in PubMed. Therefore, the extra texts were removed, together with the sentence annotation to them.
| 18.4 K | GENIA project | Jin-Dong Kim | 2023-11-28 | Released | |
| test10 | | | 212 | | Jin-Dong Kim | 2023-11-24 | | |
| craft-ca-core-dev | | Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes). | 59.8 K | University of Colorado Anschutz Medical Campus | craft-st | 2023-11-29 | Released | |
| RELISH-DB | | Abstracts contained in the data of the RELISH-DB (https://relishdb.ict.griffith.edu.au) made available for download here.
Data was downloaded from here: https://figshare.com/projects/RELISH-DB/60095
Related publication: https://academic.oup.com/database/article/doi/10.1093/database/baz085/5608006#200722023 | 0 | | | 2023-11-29 | Released | |
| bionlp-ost-19-BB-rel-test | | | 2.07 K | | ldeleger | 2023-11-29 | Developing | |
| ENG_RE_Diana | | | 213 | | dpavot | 2023-11-29 | Developing | |
| PGR-FAL | | Identification of False Relations | 128 | Diana Sousa | dpavot | 2023-11-29 | Developing | |
| PGR-UNK | | Identification of Unknown Relations
| 91 | Diana Sousa | dpavot | 2023-11-29 | Developing | |
| bionlp-ost-19-BB-kb-ner-dev | | | 1.9 K | | ldeleger | 2023-11-29 | Developing | |
| EDAN70 | | NLP tagging of articles concerning covid19. | 0 | | fettmedknaoz | 2023-11-29 | | |
| Oryza-OGER | | | 462 K | | fabiorinaldi | 2023-11-29 | | |
| PT_NER_NEL_mabarros | | | 328 | | mabarros | 2023-11-30 | Developing | |
| testproj | | - | 2 | | tllnd | 2023-11-30 | Testing | |
| SMAFIRA-Case-Studies-21494637 | | From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv | 0 | | zebet | 2023-11-26 | Developing | |
