| GlyCosmos600-GlycoGenes | | | 87 | | Jin-Dong Kim | 2023-11-28 | Testing | |
| pmc-enju-pas | | Predicate-argument structure annotation produced by Enju.
This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task.
As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA).
| 205 K | DBCLS | Jin-Dong Kim | 2023-11-28 | Developing | |
| PubMed_Structured_Abstracts | | Sections (zones) as retrieved from PubMed. | 131 K | | zebet | 2023-11-28 | Released | |
| bionlp-ost-19-BB-rel-ner-train | | | 3.62 K | | ldeleger | 2023-11-28 | Developing | |
| LitCovid-sample-PD-FMA | | | 1.93 K | | Jin-Dong Kim | 2023-11-28 | Beta | |
| SMAFIRA_OGER_TEXT | | | 116 | | zebet | 2023-11-28 | Developing | |
| Lectin | | | 3.52 K | | angata | 2023-11-28 | | |
| ykjeong_test | | pub_annotation_test | 276 | | | 2023-11-28 | Testing | |
| SMAFIRA_Methods | | Predictions for methods for the SMAFIRA project. | 0 | | zebet | 2023-11-28 | Developing | |
| SPECIES800 | | SPECIES 800 (S800): an abstract-based manually annotated corpus. S800 comprises 800 PubMed abstracts in which organism mentions were identified and mapped to the corresponding NCBI Taxonomy identifiers.
Described in:
The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text.
Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390 | 3.71 K | Evangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensen | evangelos | 2023-11-28 | Released | |
| LitCovid-sample-PD-UBERON | | PubDictionaries annotation for UBERON terms - updated at 2020-04-30
It is annotation for anatomical entities based on Uberon.
The terms in Uberon are uploaded in PubDictionaries
(Uberon),
with which the annotations in this project are produced.
The parameter configuration used for this project is
here.
Note that it is an automatically generated dictionary-based annotation.
It will be updated periodically, as the documents are increased, and the dictionary is improved.
| 310 | | Jin-Dong Kim | 2023-11-28 | Beta | |
| Glycosmos6-GlycoEpitope | | Automatic annotation by PD-GlycoEpitope. | 19.9 K | | Jin-Dong Kim | 2023-11-28 | Developing | |
| bionlp-ost-19-SeeDev-bin-dev | | | 2.58 K | | ldeleger | 2023-11-28 | Developing | |
| ENG_RE_CONSENSUS | | | 250 | | dpavot | 2023-11-28 | | |
| glycosmos-test-glycan-structure | | | 448 | | ISSAKU YAMADA | 2023-11-28 | Testing | |
| GlyCosmos600-CLO | | | 1.73 K | | Jin-Dong Kim | 2023-11-28 | Testing | |
| pubmed-2016 | | abstracts published in 2016 | 0 | | Jin-Dong Kim | 2023-11-28 | | |
| twitter-test | | | 13 | | Jin-Dong Kim | 2023-11-28 | Developing | |
| LitCovid-sample-Pubtator | | | 3.86 K | | Jin-Dong Kim | 2023-11-28 | Uploading | |
| KAIST_NLP_Annotation8 | | | 5.02 K | | kaist_nlp | 2023-11-28 | Developing | |
