> top > projects

Projects

NameTDescription# Ann.AuthorMaintainer Updated_atStatus

541-560 / 590 show all
Kymeka_cho 912024-01-18Testing
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev Development data for CRAFT SA shared task. This project contains the development (training) annotations for the Structural Annotation task of the CRAFT Shared Task 2019. This particular set contains token and sentence annotations with tokens linked via dependency relations. These dependency relations were automatically generated using the manually curated CRAFT constituency treebank files as input.490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
Ab3P-abbreviations This corpus was developed during the creation of the Ab3P abbreviation definition identification tool. It includes 1250 manually annotated MEDLINE records. This gold standard includes 1221 abbreviation-definition pairs. Abbreviation definition identification based on automatic precision estimates Sunghwan Sohn, Donald C Comeau, Won Kim and W John Wilbur BMC Bioinformatics20089:402 DOI: 10.1186/1471-2105-9-4022.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
Test_PubTator 62Chih-Hsuan Wei2023-11-29Testing
NCBIDiseaseCorpus The NCBI disease corpus is fully annotated at the mention and concept level to serve as a research resource for the biomedical natural language processing community.6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released
tmVarCorpus Wei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156.1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
chenxin_473849_800_3 3.21 Kchenxin01022024-09-22
chenxin_473849_800 178chenxin01022024-08-26
sonoma _19.3 KStandigm2023-11-24Testing
bc2gn_test test02021-07-13Testing
sonoma2 sonoma29.09 KStandigmchanung2023-11-29Beta
Preeclampsia A collection of titles and abstracts of "Preeclampsia"-related papers. They were extracted from PubMed using the MeSH term "Preeclampsia" and specifying the language to be "English, on 11th September, 2017. The texts were then annotated by PubDictionaries using the dictionary "Preeclampsia".58.7 Kcallahan_tiff2023-11-29Developing
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
Test20200205 553BLAH6-Tweets2023-11-29Testing
AlvisNLP-Test Project for testing AlviNLP PubAnnotation server during BLAH3.17Bibliome2023-11-29Testing
TEST-OrganismTaxon 444atsuko2023-11-29Testing
LitCoin-NCBITaxon-2 1.65 Katsuko2023-11-29Testing
TextMining-in-bioinformatics TextMining in bioinformatics0Aohnewug2020-04-21Developing
NameT# Ann.AuthorMaintainer Updated_atStatus

541-560 / 590 show all
Kymeka_cho 912024-01-18Testing
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
craft-sa-dev 490 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-27Released
Ab3P-abbreviations 2.33 KSunghwan Sohn, Donald C Comeau, Won Kim and W John Wilburcomeau2023-11-29Beta
Test_PubTator 62Chih-Hsuan Wei2023-11-29Testing
NCBIDiseaseCorpus 6.85 KRezarta Islamaj Doğan,Robert Leaman,Zhiyong LuChih-Hsuan Wei2023-11-29Released
tmVarCorpus 1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
chenxin_473849_800_3 3.21 Kchenxin01022024-09-22
chenxin_473849_800 178chenxin01022024-08-26
sonoma 19.3 KStandigm2023-11-24Testing
bc2gn_test 02021-07-13Testing
sonoma2 9.09 KStandigmchanung2023-11-29Beta
Preeclampsia 58.7 Kcallahan_tiff2023-11-29Developing
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
Test20200205 553BLAH6-Tweets2023-11-29Testing
AlvisNLP-Test 17Bibliome2023-11-29Testing
TEST-OrganismTaxon 444atsuko2023-11-29Testing
LitCoin-NCBITaxon-2 1.65 Katsuko2023-11-29Testing
TextMining-in-bioinformatics 0Aohnewug2020-04-21Developing