| Id |
Subject |
Object |
Predicate |
Lexical cue |
| M_114 |
0-8 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| T80217 |
12-23 |
funRiceGene:345 |
denotes |
gibberellin |
| T46079 |
12-23 |
funRiceGene:391 |
denotes |
gibberellin |
| M_125 |
12-23 |
pubtator:MESH:D005875:Chemical |
denotes |
gibberellin |
| T93114 |
12-34 |
xzyao:25238 |
denotes |
gibberellin metabolism |
| T56450 |
12-41 |
xzyao:7177 |
denotes |
gibberellin metabolism enzyme |
| T17172 |
58-70 |
funRiceGene:44, xzyao:29681 |
denotes |
plant growth |
| T68135 |
64-70 |
WTO:0000021, funRiceGene:221 |
denotes |
growth |
| T78842 |
76-80 |
PO:0009005, funRiceGene:362 |
denotes |
root |
| T48309 |
76-97 |
xzyao:39312 |
denotes |
root gravity response |
| T35538 |
102-106 |
funRiceGene:528 |
denotes |
salt |
| T74209 |
102-113 |
funRiceGene:517, xzyao:21986 |
denotes |
salt stress |
| T97581 |
107-113 |
funRiceGene:361 |
denotes |
stress |
| T61338 |
115-126 |
funRiceGene:345 |
denotes |
Gibberellin |
| T97288 |
115-126 |
funRiceGene:391 |
denotes |
Gibberellin |
| T6069 |
115-126 |
hunflair:NA:Chemical |
denotes |
Gibberellin |
| M_136 |
115-126 |
pubtator:MESH:D005875:Chemical |
denotes |
Gibberellin |
| T71603 |
128-130 |
funRiceGene:450 |
denotes |
GA |
| M_105 |
128-130 |
hunflair:NA:Gene |
denotes |
GA |
| T57846 |
172-176 |
funRiceGene:481 |
denotes |
GA |
| T41300 |
173-175 |
funRiceGene:450 |
denotes |
GA |
| M_106 |
173-175 |
hunflair:NA:Gene |
denotes |
GA |
| M_95 |
245-251 |
hunflair:NA:Gene |
denotes |
GA2oxs |
| M_96 |
281-287 |
hunflair:NA:Gene |
denotes |
GA2oxs |
| M_97 |
315-321 |
hunflair:NA:Gene |
denotes |
GA2oxs |
| T24173 |
338-346 |
xzyao:38844 |
denotes |
the gene |
| T79943 |
357-361 |
funRiceGene:481 |
denotes |
GA |
| T24197 |
358-360 |
funRiceGene:450 |
denotes |
GA |
| M_107 |
358-360 |
hunflair:NA:Gene |
denotes |
GA |
| T21456 |
358-370 |
hunflair:NA:Gene |
denotes |
GA 2-oxidase |
| M_87 |
374-378 |
hunflair:NA:Species |
denotes |
rice |
| M_129 |
374-378 |
pubtator:4530:Species |
denotes |
rice |
| T99060 |
380-392 |
xzyao:1553 |
denotes |
Oryza sativa |
| M_94 |
380-392 |
hunflair:NA:Species |
denotes |
Oryza sativa |
| M_138 |
380-392 |
pubtator:4530:Species |
denotes |
Oryza sativa |
| T70919 |
392-396 |
funRiceGene:481 |
denotes |
GA |
| T4141 |
393-395 |
funRiceGene:450 |
denotes |
GA |
| M_108 |
393-395 |
hunflair:NA:Gene |
denotes |
GA |
| T25383 |
393-405 |
hunflair:NA:Gene |
denotes |
GA 2-oxidase |
| M_85 |
393-407 |
hunflair:NA:Gene |
denotes |
GA 2-oxidase 5 |
| M_115 |
409-417 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| M_116 |
478-486 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| T59555 |
502-522 |
hunflair:NA:Gene |
denotes |
C₂₀-GA2oxs subfamily |
| M_98 |
506-512 |
hunflair:NA:Gene |
denotes |
GA2oxs |
| M_99 |
539-545 |
hunflair:NA:Gene |
denotes |
GA2oxs |
| M_128 |
556-563 |
pubtator:MESH:C043055:Chemical |
denotes |
C₂₀-GAs |
| T18752 |
560-563 |
hunflair:NA:Chemical |
denotes |
GAs |
| T25546 |
571-575 |
hunflair:NA:Gene |
denotes |
GA₅₃ |
| M_117 |
606-614 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| T43156 |
606-618 |
hunflair:NA:Gene |
denotes |
OsGA2ox5-YFP |
| T68938 |
646-651 |
hunflair:NA:Species |
denotes |
onion |
| M_137 |
646-651 |
pubtator:4679:Species |
denotes |
onion |
| T78813 |
646-667 |
xzyao:22985 |
denotes |
onion epidermal cells |
| T42347 |
652-667 |
xzyao:13403 |
denotes |
epidermal cells |
| T24824 |
721-728 |
funRiceGene:177 |
denotes |
nucleus |
| T41455 |
733-742 |
funRiceGene:193 |
denotes |
cytoplasm |
| M_41 |
744-766 |
cand:PECO:0007255-laboratory study |
denotes |
Real-time PCR analysis |
| M_42 |
744-766 |
cand:TO:0000836-multi-tissue plant structure morphology trait |
denotes |
Real-time PCR analysis |
| M_43 |
744-766 |
cand:PO:0025571-multi-tissue plant structure development stage |
denotes |
Real-time PCR analysis |
| M_44 |
744-766 |
cand:PECO:0007231-study type |
denotes |
Real-time PCR analysis |
| M_45 |
744-766 |
cand:TO:0012006-fluorescence related trait |
denotes |
Real-time PCR analysis |
| M_46 |
744-766 |
cand:PO:0007525-establishment of tissue systems stage |
denotes |
Real-time PCR analysis |
| M_47 |
744-766 |
cand:WTO:0000067-beginning of anthesis |
denotes |
Real-time PCR analysis |
| M_48 |
744-766 |
cand:PO:0005665-resin canal |
denotes |
Real-time PCR analysis |
| M_49 |
744-766 |
cand:PO:0025133-petiole canal |
denotes |
Real-time PCR analysis |
| M_50 |
744-766 |
cand:TO:0001034-relative plant height |
denotes |
Real-time PCR analysis |
| M_51 |
744-766 |
cand:TO:0000143-relative biomass |
denotes |
Real-time PCR analysis |
| M_113 |
779-782 |
hunflair:NA:Gene |
denotes |
GUS |
| T88174 |
779-791 |
xzyao:18099 |
denotes |
GUS staining |
| M_82 |
807-815 |
GeneID:RAPID:Os07g0103500MSUID:LOC_Os07g01340 |
denotes |
OsGA2ox5 |
| M_118 |
807-815 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| M_88 |
882-886 |
hunflair:NA:Species |
denotes |
rice |
| M_130 |
882-886 |
pubtator:4530:Species |
denotes |
rice |
| M_124 |
888-892 |
pubtator:4530:Species |
denotes |
Rice |
| M_8 |
888-899 |
cand:PPO:0001000-herbaceous plant |
denotes |
Rice plants |
| M_9 |
888-899 |
cand:PPO:0001001-woody plant |
denotes |
Rice plants |
| M_10 |
888-899 |
cand:PO:0025538-plant sap |
denotes |
Rice plants |
| M_11 |
888-899 |
cand:PECO:0007191-abiotic plant exposure |
denotes |
Rice plants |
| M_12 |
888-899 |
cand:PPO:0001002-perennial plant |
denotes |
Rice plants |
| M_13 |
888-899 |
cand:PECO:0007145-Xanthomonas plant exposure |
denotes |
Rice plants |
| M_14 |
888-899 |
cand:PO:0005669-oil gland |
denotes |
Rice plants |
| M_15 |
888-899 |
cand:PO:0009064-receptacle |
denotes |
Rice plants |
| M_16 |
888-899 |
cand:PO:0000003-whole plant |
denotes |
Rice plants |
| M_17 |
888-899 |
cand:PO:0000262-trichoblast |
denotes |
Rice plants |
| M_18 |
888-899 |
cand:PPO:0001045-ripe fruit |
denotes |
Rice plants |
| T74030 |
888-899 |
xzyao:23828 |
denotes |
Rice plants |
| T40139 |
888-899 |
hunflair:NA:Species |
denotes |
Rice plants |
| M_81 |
915-923 |
GeneID:RAPID:Os07g0103500MSUID:LOC_Os07g01340 |
denotes |
OsGA2ox5 |
| M_119 |
915-923 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| M_30 |
934-948 |
cand:TO:0000292-yellow dwarf disease resistance |
denotes |
dominant dwarf |
| M_31 |
934-948 |
cand:WTO:0000521-dwarf virus |
denotes |
dominant dwarf |
| M_32 |
934-948 |
cand:WTO:0000392-Dwarf bunt |
denotes |
dominant dwarf |
| M_33 |
934-948 |
cand:TO:0020067-yellow dwarf virus disease resistance |
denotes |
dominant dwarf |
| M_34 |
934-948 |
cand:TO:0000020-black streak dwarf virus resistance |
denotes |
dominant dwarf |
| M_35 |
934-948 |
cand:WTO:0000511-resistance to dwarf virus |
denotes |
dominant dwarf |
| M_36 |
934-948 |
cand:WTO:0000366-wheat dwarf |
denotes |
dominant dwarf |
| M_37 |
934-948 |
cand:PO:0009072-plant ovary |
denotes |
dominant dwarf |
| M_38 |
934-948 |
cand:funRiceGene:526-lamina joint |
denotes |
dominant dwarf |
| M_39 |
934-948 |
cand:PO:0020043-compound leaf |
denotes |
dominant dwarf |
| M_40 |
934-948 |
cand:TO:0000387-plant trait |
denotes |
dominant dwarf |
| T78313 |
934-948 |
xzyao:31065 |
denotes |
dominant dwarf |
| M_79 |
943-948 |
GeneID:GraID:GR:0060222 |
denotes |
dwarf |
| T91858 |
943-948 |
funRiceGene:135 |
denotes |
dwarf |
| M_103 |
943-948 |
hunflair:NA:Gene |
denotes |
dwarf |
| T40171 |
953-955 |
funRiceGene:450 |
denotes |
GA |
| M_109 |
953-955 |
hunflair:NA:Gene |
denotes |
GA |
| T33176 |
1007-1018 |
WTO:0000011, funRiceGene:359 |
denotes |
development |
| T7693 |
1022-1034 |
funRiceGene:103 |
denotes |
reproductive |
| T53187 |
1022-1041 |
xzyao:21960 |
denotes |
reproductive organs |
| M_104 |
1066-1074 |
hunflair:NA:Disease |
denotes |
dwarfism |
| T94911 |
1066-1084 |
xzyao:1885 |
denotes |
dwarfism phenotype |
| T14999 |
1075-1084 |
WTO:0000005 |
denotes |
phenotype |
| T84853 |
1129-1142 |
xzyao:774 |
denotes |
exogenous GA3 |
| M_86 |
1139-1142 |
hunflair:NA:Chemical |
denotes |
GA3 |
| T30908 |
1172-1190 |
xzyao:23807 |
denotes |
Ectopic expression |
| M_120 |
1194-1202 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| M_101 |
1211-1222 |
hunflair:NA:Species |
denotes |
Arabidopsis |
| M_126 |
1211-1222 |
pubtator:3702:Species |
denotes |
Arabidopsis |
| T32398 |
1245-1254 |
WTO:0000005 |
denotes |
phenotype |
| T48487 |
1295-1299 |
funRiceGene:481 |
denotes |
GA |
| T62117 |
1296-1298 |
funRiceGene:450 |
denotes |
GA |
| M_110 |
1296-1298 |
hunflair:NA:Gene |
denotes |
GA |
| T86591 |
1296-1308 |
xzyao:432 |
denotes |
GA synthesis |
| M_19 |
1296-1322 |
cand:funRiceGene:263-GA biosynthesis |
denotes |
GA synthesis-related genes |
| M_20 |
1296-1322 |
cand:funRiceGene:97-GA biosynthetic |
denotes |
GA synthesis-related genes |
| M_21 |
1296-1322 |
cand:TO:0000992-gibberellin biosynthesis trait |
denotes |
GA synthesis-related genes |
| M_22 |
1296-1322 |
cand:funRiceGene:321-ABA biosynthesis |
denotes |
GA synthesis-related genes |
| M_23 |
1296-1322 |
cand:TO:0000733-lignin biosynthesis trait |
denotes |
GA synthesis-related genes |
| M_24 |
1296-1322 |
cand:funRiceGene:288-JA biosynthesis |
denotes |
GA synthesis-related genes |
| M_25 |
1296-1322 |
cand:TO:0000394-drought related trait |
denotes |
GA synthesis-related genes |
| M_26 |
1296-1322 |
cand:TO:0000441-humidity related trait |
denotes |
GA synthesis-related genes |
| M_27 |
1296-1322 |
cand:TO:0000485-sterility related trait |
denotes |
GA synthesis-related genes |
| M_28 |
1296-1322 |
cand:WTO:0000055-shrivelled grain |
denotes |
GA synthesis-related genes |
| M_29 |
1296-1322 |
cand:funRiceGene:345-biosynthesis of phytoalexins |
denotes |
GA synthesis-related genes |
| T30579 |
1296-1322 |
xzyao:2846 |
denotes |
GA synthesis-related genes |
| T30365 |
1326-1330 |
funRiceGene:481 |
denotes |
GA |
| T36069 |
1327-1329 |
funRiceGene:450 |
denotes |
GA |
| M_111 |
1327-1329 |
hunflair:NA:Gene |
denotes |
GA |
| T56149 |
1327-1339 |
xzyao:15156 |
denotes |
GA signaling |
| M_0 |
1327-1345 |
cand:funRiceGene:78-JA signalling repressor |
denotes |
GA signaling genes |
| M_1 |
1327-1345 |
cand:funRiceGene:32-transcription regulator |
denotes |
GA signaling genes |
| M_2 |
1327-1345 |
cand:funRiceGene:266-BR signaling |
denotes |
GA signaling genes |
| M_3 |
1327-1345 |
cand:funRiceGene:263-GA biosynthesis |
denotes |
GA signaling genes |
| M_4 |
1327-1345 |
cand:funRiceGene:333-transcription suppressor |
denotes |
GA signaling genes |
| M_5 |
1327-1345 |
cand:funRiceGene:53-JA signaling |
denotes |
GA signaling genes |
| M_6 |
1327-1345 |
cand:funRiceGene:56-JA signalling |
denotes |
GA signaling genes |
| M_7 |
1327-1345 |
cand:funRiceGene:313-Pi signaling |
denotes |
GA signaling genes |
| T54839 |
1327-1345 |
xzyao:31700 |
denotes |
GA signaling genes |
| M_89 |
1392-1396 |
hunflair:NA:Species |
denotes |
rice |
| M_131 |
1392-1396 |
pubtator:4530:Species |
denotes |
rice |
| T54008 |
1392-1403 |
xzyao:23828 |
denotes |
rice plants |
| M_90 |
1422-1426 |
hunflair:NA:Species |
denotes |
rice |
| M_132 |
1422-1426 |
pubtator:4530:Species |
denotes |
rice |
| M_80 |
1428-1436 |
GeneID:RAPID:Os05g0178100MSUID:LOC_Os05g08540GraID:GR:0061381 |
denotes |
OsGA3ox1 |
| M_84 |
1428-1436 |
hunflair:NA:Gene |
denotes |
OsGA3ox1 |
| T27106 |
1472-1481 |
xzyao:29381 |
denotes |
last step |
| T62904 |
1489-1502 |
xzyao:10910 |
denotes |
bioactive GAs |
| T54478 |
1499-1502 |
hunflair:NA:Chemical |
denotes |
GAs |
| M_91 |
1557-1561 |
hunflair:NA:Species |
denotes |
rice |
| M_133 |
1557-1561 |
pubtator:4530:Species |
denotes |
rice |
| M_121 |
1576-1584 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| M_83 |
1576-1587 |
GeneID:NA |
denotes |
OsGA2ox5-ox |
| M_100 |
1576-1587 |
hunflair:NA:Gene |
denotes |
OsGA2ox5-ox |
| M_68 |
1605-1642 |
cand:WTO:0000251-quantity of hard starch granule |
denotes |
increased starch granule accumulation |
| M_69 |
1605-1642 |
cand:TO:0000696-starch content |
denotes |
increased starch granule accumulation |
| M_70 |
1605-1642 |
cand:WTO:0000123-amount of damaged starch |
denotes |
increased starch granule accumulation |
| M_71 |
1605-1642 |
cand:funRiceGene:320-starch biosynthesis |
denotes |
increased starch granule accumulation |
| M_72 |
1605-1642 |
cand:TO:0002658-starch grain synthesis |
denotes |
increased starch granule accumulation |
| M_73 |
1605-1642 |
cand:WTO:0000149-grain starch content |
denotes |
increased starch granule accumulation |
| M_74 |
1605-1642 |
cand:funRiceGene:344-arsenic accumulation |
denotes |
increased starch granule accumulation |
| M_75 |
1605-1642 |
cand:funRiceGene:193-Fe accumulation |
denotes |
increased starch granule accumulation |
| M_76 |
1605-1642 |
cand:funRiceGene:384-cadmium accumulation |
denotes |
increased starch granule accumulation |
| M_77 |
1605-1642 |
cand:funRiceGene:78-sucrose translocation |
denotes |
increased starch granule accumulation |
| M_78 |
1605-1642 |
cand:funRiceGene:233-photoassimilate translocation |
denotes |
increased starch granule accumulation |
| T98862 |
1605-1642 |
xzyao:30299 |
denotes |
increased starch granule accumulation |
| T89264 |
1615-1621 |
funRiceGene:143 |
denotes |
starch |
| T90579 |
1615-1629 |
xzyao:14618 |
denotes |
starch granule |
| M_52 |
1647-1664 |
cand:TO:0002693-gravity response trait |
denotes |
gravity responses |
| M_54 |
1647-1664 |
cand:PECO:0007146-gravity exposure |
denotes |
gravity responses |
| M_56 |
1647-1664 |
cand:PECO:0007315-zero gravity exposure |
denotes |
gravity responses |
| M_58 |
1647-1664 |
cand:TO:0002651-shoot axis phototropism response trait |
denotes |
gravity responses |
| M_60 |
1647-1664 |
cand:funRiceGene:317-gravitropic response |
denotes |
gravity responses |
| M_62 |
1647-1664 |
cand:PECO:0007282-standing water exposure |
denotes |
gravity responses |
| M_64 |
1647-1664 |
cand:funRiceGene:411-auxin response |
denotes |
gravity responses |
| M_66 |
1647-1664 |
cand:TO:0000063-mimic response |
denotes |
gravity responses |
| T41348 |
1647-1664 |
xzyao:33954 |
denotes |
gravity responses |
| T16707 |
1686-1690 |
funRiceGene:481 |
denotes |
GA |
| T43674 |
1687-1689 |
funRiceGene:450 |
denotes |
GA |
| M_112 |
1687-1689 |
hunflair:NA:Gene |
denotes |
GA |
| T94351 |
1693-1697 |
PO:0009005, funRiceGene:362 |
denotes |
root |
| T68031 |
1698-1704 |
funRiceGene:143 |
denotes |
starch |
| T2024 |
1698-1712 |
xzyao:14618 |
denotes |
starch granule |
| T14273 |
1713-1724 |
WTO:0000011, funRiceGene:359 |
denotes |
development |
| M_53 |
1729-1746 |
cand:TO:0002693-gravity response trait |
denotes |
gravity responses |
| M_55 |
1729-1746 |
cand:PECO:0007146-gravity exposure |
denotes |
gravity responses |
| M_57 |
1729-1746 |
cand:PECO:0007315-zero gravity exposure |
denotes |
gravity responses |
| M_59 |
1729-1746 |
cand:TO:0002651-shoot axis phototropism response trait |
denotes |
gravity responses |
| M_61 |
1729-1746 |
cand:funRiceGene:317-gravitropic response |
denotes |
gravity responses |
| M_63 |
1729-1746 |
cand:PECO:0007282-standing water exposure |
denotes |
gravity responses |
| M_65 |
1729-1746 |
cand:funRiceGene:411-auxin response |
denotes |
gravity responses |
| M_67 |
1729-1746 |
cand:TO:0000063-mimic response |
denotes |
gravity responses |
| T92943 |
1729-1746 |
xzyao:33954 |
denotes |
gravity responses |
| M_92 |
1761-1765 |
hunflair:NA:Species |
denotes |
rice |
| M_134 |
1761-1765 |
pubtator:4530:Species |
denotes |
rice |
| M_102 |
1770-1781 |
hunflair:NA:Species |
denotes |
Arabidopsis |
| M_127 |
1770-1781 |
pubtator:3702:Species |
denotes |
Arabidopsis |
| T12791 |
1770-1788 |
xzyao:273 |
denotes |
Arabidopsis plants |
| M_122 |
1804-1812 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| T84197 |
1823-1832 |
funRiceGene:269 |
denotes |
resistant |
| T62496 |
1841-1849 |
funRiceGene:375 |
denotes |
salinity |
| T484 |
1841-1856 |
funRiceGene:262, xzyao:1973 |
denotes |
salinity stress |
| T26074 |
1850-1856 |
funRiceGene:361 |
denotes |
stress |
| T83929 |
1862-1878 |
xzyao:27524 |
denotes |
wild-type plants |
| M_123 |
1907-1915 |
hunflair:NA:Gene |
denotes |
OsGA2ox5 |
| T96996 |
1941-1944 |
hunflair:NA:Chemical |
denotes |
GAs |
| T65471 |
1945-1956 |
funRiceGene:130 |
denotes |
homeostasis |
| T34539 |
1958-1969 |
WTO:0000011, funRiceGene:359 |
denotes |
development |
| T39478 |
1971-1988 |
xzyao:33954 |
denotes |
gravity responses |
| T10563 |
1993-1999 |
funRiceGene:361 |
denotes |
stress |
| T99957 |
1993-2009 |
funRiceGene:287, xzyao:3037 |
denotes |
stress tolerance |
| T41503 |
2000-2009 |
funRiceGene:214 |
denotes |
tolerance |
| M_93 |
2013-2017 |
hunflair:NA:Species |
denotes |
rice |
| M_135 |
2013-2017 |
pubtator:4530:Species |
denotes |
rice |
