| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T11434 |
0-12 |
JJ |
denotes |
Phylogenetic |
| T11435 |
13-21 |
NN |
denotes |
analysis |
| T11436 |
21-505 |
sentence |
denotes |
In order to examine evolutionary relationships of proteins containing coiled coil domains, protein sequences representing the major members of this super family, including TACC, RHAMM, KLP, keratin and tropomyosin from available vertebrates and their recognizable orthologues from the urochordate Ciona intestinalis, Drosophila melanogaster, C. elegans and Saccharomyces cerevisiae were either directly retrieved from NCBI sequence databases, newly predicted or isolated (see above). |
| T11437 |
22-24 |
IN |
denotes |
In |
| T11439 |
25-30 |
NN |
denotes |
order |
| T11440 |
31-33 |
TO |
denotes |
to |
| T11441 |
34-41 |
VB |
denotes |
examine |
| T11442 |
42-54 |
JJ |
denotes |
evolutionary |
| T11443 |
55-68 |
NNS |
denotes |
relationships |
| T11444 |
69-71 |
IN |
denotes |
of |
| T11445 |
72-80 |
NN |
denotes |
proteins |
| T11446 |
81-91 |
VBG |
denotes |
containing |
| T11447 |
92-98 |
VBN |
denotes |
coiled |
| T11448 |
99-103 |
NN |
denotes |
coil |
| T11449 |
104-111 |
NNS |
denotes |
domains |
| T11450 |
111-113 |
, |
denotes |
, |
| T11451 |
113-120 |
NN |
denotes |
protein |
| T11452 |
121-130 |
NNS |
denotes |
sequences |
| T11453 |
131-143 |
VBG |
denotes |
representing |
| T11454 |
144-147 |
DT |
denotes |
the |
| T11456 |
148-153 |
JJ |
denotes |
major |
| T11455 |
154-161 |
NNS |
denotes |
members |
| T11457 |
162-164 |
IN |
denotes |
of |
| T11458 |
165-169 |
DT |
denotes |
this |
| T11460 |
170-175 |
JJ |
denotes |
super |
| T11459 |
176-182 |
NN |
denotes |
family |
| T11461 |
182-184 |
, |
denotes |
, |
| T11462 |
184-193 |
VBG |
denotes |
including |
| T11463 |
194-198 |
NN |
denotes |
TACC |
| T11464 |
198-200 |
, |
denotes |
, |
| T11465 |
200-205 |
NN |
denotes |
RHAMM |
| T11466 |
205-207 |
, |
denotes |
, |
| T11467 |
207-210 |
NN |
denotes |
KLP |
| T11468 |
210-212 |
, |
denotes |
, |
| T11469 |
212-219 |
NN |
denotes |
keratin |
| T11470 |
220-223 |
CC |
denotes |
and |
| T11471 |
224-235 |
NN |
denotes |
tropomyosin |
| T11472 |
236-240 |
IN |
denotes |
from |
| T11473 |
241-250 |
JJ |
denotes |
available |
| T11474 |
251-262 |
NNS |
denotes |
vertebrates |
| T11475 |
263-266 |
CC |
denotes |
and |
| T11476 |
267-272 |
PRP$ |
denotes |
their |
| T11478 |
273-285 |
JJ |
denotes |
recognizable |
| T11477 |
286-297 |
NNS |
denotes |
orthologues |
| T11479 |
298-302 |
IN |
denotes |
from |
| T11480 |
303-306 |
DT |
denotes |
the |
| T11481 |
307-318 |
NN |
denotes |
urochordate |
| T11482 |
319-324 |
NNP |
denotes |
Ciona |
| T11483 |
325-337 |
NNP |
denotes |
intestinalis |
| T11484 |
337-339 |
, |
denotes |
, |
| T11485 |
339-349 |
NNP |
denotes |
Drosophila |
| T11486 |
350-362 |
NNP |
denotes |
melanogaster |
| T11487 |
362-364 |
, |
denotes |
, |
| T11488 |
364-366 |
NNP |
denotes |
C. |
| T11489 |
367-374 |
NNP |
denotes |
elegans |
| T11490 |
375-378 |
CC |
denotes |
and |
| T11491 |
379-392 |
NNP |
denotes |
Saccharomyces |
| T11492 |
393-403 |
NNP |
denotes |
cerevisiae |
| T11493 |
404-408 |
VBD |
denotes |
were |
| T11494 |
409-415 |
CC |
denotes |
either |
| T11495 |
416-424 |
RB |
denotes |
directly |
| T11438 |
425-434 |
VBN |
denotes |
retrieved |
| T11496 |
435-439 |
IN |
denotes |
from |
| T11497 |
440-444 |
NN |
denotes |
NCBI |
| T11499 |
445-453 |
NN |
denotes |
sequence |
| T11498 |
454-463 |
NNS |
denotes |
databases |
| T11500 |
463-465 |
, |
denotes |
, |
| T11501 |
465-470 |
RB |
denotes |
newly |
| T11502 |
471-480 |
VBN |
denotes |
predicted |
| T11503 |
481-483 |
CC |
denotes |
or |
| T11504 |
484-492 |
VBN |
denotes |
isolated |
| T11505 |
493-494 |
-LRB- |
denotes |
( |
| T11506 |
494-497 |
VB |
denotes |
see |
| T11507 |
498-503 |
RB |
denotes |
above |
| T11508 |
503-504 |
-RRB- |
denotes |
) |
| T11509 |
504-505 |
. |
denotes |
. |
| T11510 |
505-835 |
sentence |
denotes |
Species abbreviations are as follows: hs (Homo sapiens), mm (Mus musculus), rn (Rattus norvegus), oc (Oryctolagus cuniculus), gg (Gallus gallus), xl (Xenopus laevis), st (Silurana tropicalis), tr (Takifugu rubripes), dr (Danio rerio), ci (Ciona intestinalis), dm (D. melanogaster), ce (C. elegans), sc (Saccharomyces cerevisiae). |
| T11511 |
506-513 |
NN |
denotes |
Species |
| T11512 |
514-527 |
NNS |
denotes |
abbreviations |
| T11513 |
528-531 |
VBP |
denotes |
are |
| T11514 |
532-534 |
IN |
denotes |
as |
| T11515 |
535-542 |
VBZ |
denotes |
follows |
| T11516 |
542-544 |
: |
denotes |
: |
| T11517 |
544-546 |
NNP |
denotes |
hs |
| T11518 |
547-548 |
-LRB- |
denotes |
( |
| T11519 |
548-552 |
NNP |
denotes |
Homo |
| T11520 |
553-560 |
NNP |
denotes |
sapiens |
| T11521 |
560-561 |
-RRB- |
denotes |
) |
| T11522 |
561-563 |
, |
denotes |
, |
| T11523 |
563-565 |
NNP |
denotes |
mm |
| T11524 |
566-567 |
-LRB- |
denotes |
( |
| T11525 |
567-570 |
NNP |
denotes |
Mus |
| T11526 |
571-579 |
NNP |
denotes |
musculus |
| T11527 |
579-580 |
-RRB- |
denotes |
) |
| T11528 |
580-582 |
, |
denotes |
, |
| T11529 |
582-584 |
NNP |
denotes |
rn |
| T11530 |
585-586 |
-LRB- |
denotes |
( |
| T11531 |
586-592 |
NNP |
denotes |
Rattus |
| T11532 |
593-601 |
NNP |
denotes |
norvegus |
| T11533 |
601-602 |
-RRB- |
denotes |
) |
| T11534 |
602-604 |
, |
denotes |
, |
| T11535 |
604-606 |
NNP |
denotes |
oc |
| T11536 |
607-608 |
-LRB- |
denotes |
( |
| T11537 |
608-619 |
NNP |
denotes |
Oryctolagus |
| T11538 |
620-629 |
NNP |
denotes |
cuniculus |
| T11539 |
629-630 |
-RRB- |
denotes |
) |
| T11540 |
630-632 |
, |
denotes |
, |
| T11541 |
632-634 |
NNP |
denotes |
gg |
| T11542 |
635-636 |
-LRB- |
denotes |
( |
| T11543 |
636-642 |
NNP |
denotes |
Gallus |
| T11544 |
643-649 |
NNP |
denotes |
gallus |
| T11545 |
649-650 |
-RRB- |
denotes |
) |
| T11546 |
650-652 |
, |
denotes |
, |
| T11547 |
652-654 |
NNP |
denotes |
xl |
| T11548 |
655-656 |
-LRB- |
denotes |
( |
| T11549 |
656-663 |
NNP |
denotes |
Xenopus |
| T11550 |
664-670 |
NNP |
denotes |
laevis |
| T11551 |
670-671 |
-RRB- |
denotes |
) |
| T11552 |
671-673 |
, |
denotes |
, |
| T11553 |
673-675 |
NNP |
denotes |
st |
| T11554 |
676-677 |
-LRB- |
denotes |
( |
| T11555 |
677-685 |
NNP |
denotes |
Silurana |
| T11556 |
686-696 |
NNP |
denotes |
tropicalis |
| T11557 |
696-697 |
-RRB- |
denotes |
) |
| T11558 |
697-699 |
, |
denotes |
, |
| T11559 |
699-701 |
NNP |
denotes |
tr |
| T11560 |
702-703 |
-LRB- |
denotes |
( |
| T11561 |
703-711 |
NNP |
denotes |
Takifugu |
| T11562 |
712-720 |
NNP |
denotes |
rubripes |
| T11563 |
720-721 |
-RRB- |
denotes |
) |
| T11564 |
721-723 |
, |
denotes |
, |
| T11565 |
723-725 |
NNP |
denotes |
dr |
| T11566 |
726-727 |
-LRB- |
denotes |
( |
| T11567 |
727-732 |
NNP |
denotes |
Danio |
| T11568 |
733-738 |
NNP |
denotes |
rerio |
| T11569 |
738-739 |
-RRB- |
denotes |
) |
| T11570 |
739-741 |
, |
denotes |
, |
| T11571 |
741-743 |
NNP |
denotes |
ci |
| T11572 |
744-745 |
-LRB- |
denotes |
( |
| T11573 |
745-750 |
NNP |
denotes |
Ciona |
| T11574 |
751-763 |
NNP |
denotes |
intestinalis |
| T11575 |
763-764 |
-RRB- |
denotes |
) |
| T11576 |
764-766 |
, |
denotes |
, |
| T11577 |
766-768 |
NN |
denotes |
dm |
| T11578 |
769-770 |
-LRB- |
denotes |
( |
| T11579 |
770-772 |
NNP |
denotes |
D. |
| T11580 |
773-785 |
NNP |
denotes |
melanogaster |
| T11581 |
785-786 |
-RRB- |
denotes |
) |
| T11582 |
786-788 |
, |
denotes |
, |
| T11583 |
788-790 |
NNP |
denotes |
ce |
| T11584 |
791-792 |
-LRB- |
denotes |
( |
| T11585 |
792-794 |
NNP |
denotes |
C. |
| T11586 |
795-802 |
NNP |
denotes |
elegans |
| T11587 |
802-803 |
-RRB- |
denotes |
) |
| T11588 |
803-805 |
, |
denotes |
, |
| T11589 |
805-807 |
NNP |
denotes |
sc |
| T11590 |
808-809 |
-LRB- |
denotes |
( |
| T11591 |
809-822 |
NNP |
denotes |
Saccharomyces |
| T11592 |
823-833 |
NNP |
denotes |
cerevisiae |
| T11593 |
833-834 |
-RRB- |
denotes |
) |
| T11594 |
834-835 |
. |
denotes |
. |
| T11595 |
835-1803 |
sentence |
denotes |
The sequences identified above and the following protein or predicted translations were used for phylogenetic analysis: hsTACC1A (NP_006274), hsTACC2l (AAO62630) hsTACC2s (AAO62629), hsTACC3 (NP_006333), mmTACC3 (Q9JJ11), xlMaskin (Q9PTG8), dmTACC (AAF52099), ceTAC1 (NP_497059), scSPC72 (NP_009352), hsRHAMM (NP_036616), mmRHAMM (NP_038580), rnRHAMM (NP_037096), drRHAMM (AAQ97980), hsKeratin (CAB76828), mmKeratin (A61368), rnKeratin (XP_235679), hsTPM1 (NP_000357), mmTPM1 (NP_077745), rnTPM1 (NP_62004, drTPM1 (NP_571180) dmTPM1 (P06754), ceTPM (NP_493540) scTPM1 (P17536), hsKLP2 (BAB03309), rnKIF15 (AAP44513), xlKLP2 (CAA08879), dmKLP2 (NP_476818), ceKLP18 (AA034669), hsKIF3A (Q9Y496), mmKIF3A (NP_032469), rnKIF3A (XP_340797), xlKIF3A (CAA08879), ceKLP11 (NP_741473), ciKIF3 (ci0100148992), hsKIF3B (NP_004789), mmKIF3B (NP_004789), rnKIF3B (XP_215883), dmKIF3B (NP_524029), hsKIF3C (NP_002245), mmKIF3C (NP_032471), rnKIF3C (NP_445938), dmKIF3C (NP_651939). |
| T11596 |
836-839 |
DT |
denotes |
The |
| T11597 |
840-849 |
NNS |
denotes |
sequences |
| T11599 |
850-860 |
VBN |
denotes |
identified |
| T11600 |
861-866 |
RB |
denotes |
above |
| T11601 |
867-870 |
CC |
denotes |
and |
| T11602 |
871-874 |
DT |
denotes |
the |
| T11604 |
875-884 |
VBG |
denotes |
following |
| T11605 |
885-892 |
NN |
denotes |
protein |
| T11606 |
893-895 |
CC |
denotes |
or |
| T11607 |
896-905 |
VBN |
denotes |
predicted |
| T11603 |
906-918 |
NNS |
denotes |
translations |
| T11608 |
919-923 |
VBD |
denotes |
were |
| T11598 |
924-928 |
VBN |
denotes |
used |
| T11609 |
929-932 |
IN |
denotes |
for |
| T11610 |
933-945 |
JJ |
denotes |
phylogenetic |
| T11611 |
946-954 |
NN |
denotes |
analysis |
| T11612 |
954-956 |
: |
denotes |
: |
| T11613 |
956-964 |
NN |
denotes |
hsTACC1A |
| T11614 |
965-966 |
-LRB- |
denotes |
( |
| T11615 |
966-975 |
NN |
denotes |
NP_006274 |
| T11616 |
975-976 |
-RRB- |
denotes |
) |
| T11617 |
976-978 |
, |
denotes |
, |
| T11618 |
978-986 |
NN |
denotes |
hsTACC2l |
| T11619 |
987-988 |
-LRB- |
denotes |
( |
| T11620 |
988-996 |
NN |
denotes |
AAO62630 |
| T11621 |
996-997 |
-RRB- |
denotes |
) |
| T11622 |
998-1006 |
NN |
denotes |
hsTACC2s |
| T11623 |
1007-1008 |
-LRB- |
denotes |
( |
| T11624 |
1008-1016 |
NN |
denotes |
AAO62629 |
| T11625 |
1016-1017 |
-RRB- |
denotes |
) |
| T11626 |
1017-1019 |
, |
denotes |
, |
| T11627 |
1019-1026 |
NN |
denotes |
hsTACC3 |
| T11628 |
1027-1028 |
-LRB- |
denotes |
( |
| T11629 |
1028-1037 |
NN |
denotes |
NP_006333 |
| T11630 |
1037-1038 |
-RRB- |
denotes |
) |
| T11631 |
1038-1040 |
, |
denotes |
, |
| T11632 |
1040-1047 |
NN |
denotes |
mmTACC3 |
| T11633 |
1048-1049 |
-LRB- |
denotes |
( |
| T11634 |
1049-1055 |
NN |
denotes |
Q9JJ11 |
| T11635 |
1055-1056 |
-RRB- |
denotes |
) |
| T11636 |
1056-1058 |
, |
denotes |
, |
| T11637 |
1058-1066 |
NN |
denotes |
xlMaskin |
| T11638 |
1067-1068 |
-LRB- |
denotes |
( |
| T11639 |
1068-1074 |
NN |
denotes |
Q9PTG8 |
| T11640 |
1074-1075 |
-RRB- |
denotes |
) |
| T11641 |
1075-1077 |
, |
denotes |
, |
| T11642 |
1077-1083 |
NN |
denotes |
dmTACC |
| T11643 |
1084-1085 |
-LRB- |
denotes |
( |
| T11644 |
1085-1093 |
NN |
denotes |
AAF52099 |
| T11645 |
1093-1094 |
-RRB- |
denotes |
) |
| T11646 |
1094-1096 |
, |
denotes |
, |
| T11647 |
1096-1102 |
NN |
denotes |
ceTAC1 |
| T11648 |
1103-1104 |
-LRB- |
denotes |
( |
| T11649 |
1104-1113 |
NN |
denotes |
NP_497059 |
| T11650 |
1113-1114 |
-RRB- |
denotes |
) |
| T11651 |
1114-1116 |
, |
denotes |
, |
| T11652 |
1116-1123 |
NN |
denotes |
scSPC72 |
| T11653 |
1124-1125 |
-LRB- |
denotes |
( |
| T11654 |
1125-1134 |
NN |
denotes |
NP_009352 |
| T11655 |
1134-1135 |
-RRB- |
denotes |
) |
| T11656 |
1135-1137 |
, |
denotes |
, |
| T11657 |
1137-1144 |
NN |
denotes |
hsRHAMM |
| T11658 |
1145-1146 |
-LRB- |
denotes |
( |
| T11659 |
1146-1155 |
NN |
denotes |
NP_036616 |
| T11660 |
1155-1156 |
-RRB- |
denotes |
) |
| T11661 |
1156-1158 |
, |
denotes |
, |
| T11662 |
1158-1165 |
NN |
denotes |
mmRHAMM |
| T11663 |
1166-1167 |
-LRB- |
denotes |
( |
| T11664 |
1167-1176 |
NN |
denotes |
NP_038580 |
| T11665 |
1176-1177 |
-RRB- |
denotes |
) |
| T11666 |
1177-1179 |
, |
denotes |
, |
| T11667 |
1179-1186 |
NN |
denotes |
rnRHAMM |
| T11668 |
1187-1188 |
-LRB- |
denotes |
( |
| T11669 |
1188-1197 |
NN |
denotes |
NP_037096 |
| T11670 |
1197-1198 |
-RRB- |
denotes |
) |
| T11671 |
1198-1200 |
, |
denotes |
, |
| T11672 |
1200-1207 |
NN |
denotes |
drRHAMM |
| T11673 |
1208-1209 |
-LRB- |
denotes |
( |
| T11674 |
1209-1217 |
NN |
denotes |
AAQ97980 |
| T11675 |
1217-1218 |
-RRB- |
denotes |
) |
| T11676 |
1218-1220 |
, |
denotes |
, |
| T11677 |
1220-1229 |
NN |
denotes |
hsKeratin |
| T11678 |
1230-1231 |
-LRB- |
denotes |
( |
| T11679 |
1231-1239 |
NN |
denotes |
CAB76828 |
| T11680 |
1239-1240 |
-RRB- |
denotes |
) |
| T11681 |
1240-1242 |
, |
denotes |
, |
| T11682 |
1242-1251 |
NN |
denotes |
mmKeratin |
| T11683 |
1252-1253 |
-LRB- |
denotes |
( |
| T11684 |
1253-1259 |
NN |
denotes |
A61368 |
| T11685 |
1259-1260 |
-RRB- |
denotes |
) |
| T11686 |
1260-1262 |
, |
denotes |
, |
| T11687 |
1262-1271 |
NN |
denotes |
rnKeratin |
| T11688 |
1272-1273 |
-LRB- |
denotes |
( |
| T11689 |
1273-1282 |
NN |
denotes |
XP_235679 |
| T11690 |
1282-1283 |
-RRB- |
denotes |
) |
| T11691 |
1283-1285 |
, |
denotes |
, |
| T11692 |
1285-1291 |
NN |
denotes |
hsTPM1 |
| T11693 |
1292-1293 |
-LRB- |
denotes |
( |
| T11694 |
1293-1302 |
NN |
denotes |
NP_000357 |
| T11695 |
1302-1303 |
-RRB- |
denotes |
) |
| T11696 |
1303-1305 |
, |
denotes |
, |
| T11697 |
1305-1311 |
NN |
denotes |
mmTPM1 |
| T11698 |
1312-1313 |
-LRB- |
denotes |
( |
| T11699 |
1313-1322 |
NN |
denotes |
NP_077745 |
| T11700 |
1322-1323 |
-RRB- |
denotes |
) |
| T11701 |
1323-1325 |
, |
denotes |
, |
| T11702 |
1325-1331 |
NN |
denotes |
rnTPM1 |
| T11703 |
1332-1333 |
-LRB- |
denotes |
( |
| T11704 |
1333-1341 |
NN |
denotes |
NP_62004 |
| T11705 |
1341-1343 |
, |
denotes |
, |
| T11706 |
1343-1349 |
NN |
denotes |
drTPM1 |
| T11707 |
1350-1351 |
-LRB- |
denotes |
( |
| T11708 |
1351-1360 |
NN |
denotes |
NP_571180 |
| T11709 |
1360-1361 |
-RRB- |
denotes |
) |
| T11710 |
1362-1368 |
NN |
denotes |
dmTPM1 |
| T11711 |
1369-1370 |
-LRB- |
denotes |
( |
| T11712 |
1370-1376 |
NN |
denotes |
P06754 |
| T11713 |
1376-1377 |
-RRB- |
denotes |
) |
| T11714 |
1377-1379 |
, |
denotes |
, |
| T11715 |
1379-1384 |
NN |
denotes |
ceTPM |
| T11716 |
1385-1386 |
-LRB- |
denotes |
( |
| T11717 |
1386-1395 |
NN |
denotes |
NP_493540 |
| T11718 |
1395-1396 |
-RRB- |
denotes |
) |
| T11719 |
1397-1403 |
NN |
denotes |
scTPM1 |
| T11720 |
1404-1405 |
-LRB- |
denotes |
( |
| T11721 |
1405-1411 |
NN |
denotes |
P17536 |
| T11722 |
1411-1412 |
-RRB- |
denotes |
) |
| T11723 |
1412-1414 |
, |
denotes |
, |
| T11724 |
1414-1420 |
NN |
denotes |
hsKLP2 |
| T11725 |
1421-1422 |
-LRB- |
denotes |
( |
| T11726 |
1422-1430 |
NN |
denotes |
BAB03309 |
| T11727 |
1430-1431 |
-RRB- |
denotes |
) |
| T11728 |
1431-1433 |
, |
denotes |
, |
| T11729 |
1433-1440 |
NN |
denotes |
rnKIF15 |
| T11730 |
1441-1442 |
-LRB- |
denotes |
( |
| T11731 |
1442-1450 |
NN |
denotes |
AAP44513 |
| T11732 |
1450-1451 |
-RRB- |
denotes |
) |
| T11733 |
1451-1453 |
, |
denotes |
, |
| T11734 |
1453-1459 |
NN |
denotes |
xlKLP2 |
| T11735 |
1460-1461 |
-LRB- |
denotes |
( |
| T11736 |
1461-1469 |
NN |
denotes |
CAA08879 |
| T11737 |
1469-1470 |
-RRB- |
denotes |
) |
| T11738 |
1470-1472 |
, |
denotes |
, |
| T11739 |
1472-1478 |
NN |
denotes |
dmKLP2 |
| T11740 |
1479-1480 |
-LRB- |
denotes |
( |
| T11741 |
1480-1489 |
NN |
denotes |
NP_476818 |
| T11742 |
1489-1490 |
-RRB- |
denotes |
) |
| T11743 |
1490-1492 |
, |
denotes |
, |
| T11744 |
1492-1499 |
NN |
denotes |
ceKLP18 |
| T11745 |
1500-1501 |
-LRB- |
denotes |
( |
| T11746 |
1501-1509 |
NN |
denotes |
AA034669 |
| T11747 |
1509-1510 |
-RRB- |
denotes |
) |
| T11748 |
1510-1512 |
, |
denotes |
, |
| T11749 |
1512-1519 |
NN |
denotes |
hsKIF3A |
| T11750 |
1520-1521 |
-LRB- |
denotes |
( |
| T11751 |
1521-1527 |
NN |
denotes |
Q9Y496 |
| T11752 |
1527-1528 |
-RRB- |
denotes |
) |
| T11753 |
1528-1530 |
, |
denotes |
, |
| T11754 |
1530-1537 |
NN |
denotes |
mmKIF3A |
| T11755 |
1538-1539 |
-LRB- |
denotes |
( |
| T11756 |
1539-1548 |
NN |
denotes |
NP_032469 |
| T11757 |
1548-1549 |
-RRB- |
denotes |
) |
| T11758 |
1549-1551 |
, |
denotes |
, |
| T11759 |
1551-1558 |
NN |
denotes |
rnKIF3A |
| T11760 |
1559-1560 |
-LRB- |
denotes |
( |
| T11761 |
1560-1569 |
NN |
denotes |
XP_340797 |
| T11762 |
1569-1570 |
-RRB- |
denotes |
) |
| T11763 |
1570-1572 |
, |
denotes |
, |
| T11764 |
1572-1579 |
NN |
denotes |
xlKIF3A |
| T11765 |
1580-1581 |
-LRB- |
denotes |
( |
| T11766 |
1581-1589 |
NN |
denotes |
CAA08879 |
| T11767 |
1589-1590 |
-RRB- |
denotes |
) |
| T11768 |
1590-1592 |
, |
denotes |
, |
| T11769 |
1592-1599 |
NN |
denotes |
ceKLP11 |
| T11770 |
1600-1601 |
-LRB- |
denotes |
( |
| T11771 |
1601-1610 |
NN |
denotes |
NP_741473 |
| T11772 |
1610-1611 |
-RRB- |
denotes |
) |
| T11773 |
1611-1613 |
, |
denotes |
, |
| T11774 |
1613-1619 |
NN |
denotes |
ciKIF3 |
| T11775 |
1620-1621 |
-LRB- |
denotes |
( |
| T11776 |
1621-1633 |
NN |
denotes |
ci0100148992 |
| T11777 |
1633-1634 |
-RRB- |
denotes |
) |
| T11778 |
1634-1636 |
, |
denotes |
, |
| T11779 |
1636-1643 |
NN |
denotes |
hsKIF3B |
| T11780 |
1644-1645 |
-LRB- |
denotes |
( |
| T11781 |
1645-1654 |
NN |
denotes |
NP_004789 |
| T11782 |
1654-1655 |
-RRB- |
denotes |
) |
| T11783 |
1655-1657 |
, |
denotes |
, |
| T11784 |
1657-1664 |
NN |
denotes |
mmKIF3B |
| T11785 |
1665-1666 |
-LRB- |
denotes |
( |
| T11786 |
1666-1675 |
NN |
denotes |
NP_004789 |
| T11787 |
1675-1676 |
-RRB- |
denotes |
) |
| T11788 |
1676-1678 |
, |
denotes |
, |
| T11789 |
1678-1685 |
NN |
denotes |
rnKIF3B |
| T11790 |
1686-1687 |
-LRB- |
denotes |
( |
| T11791 |
1687-1696 |
NN |
denotes |
XP_215883 |
| T11792 |
1696-1697 |
-RRB- |
denotes |
) |
| T11793 |
1697-1699 |
, |
denotes |
, |
| T11794 |
1699-1706 |
NN |
denotes |
dmKIF3B |
| T11795 |
1707-1708 |
-LRB- |
denotes |
( |
| T11796 |
1708-1717 |
NN |
denotes |
NP_524029 |
| T11797 |
1717-1718 |
-RRB- |
denotes |
) |
| T11798 |
1718-1720 |
, |
denotes |
, |
| T11799 |
1720-1727 |
NN |
denotes |
hsKIF3C |
| T11800 |
1728-1729 |
-LRB- |
denotes |
( |
| T11801 |
1729-1738 |
NN |
denotes |
NP_002245 |
| T11802 |
1738-1739 |
-RRB- |
denotes |
) |
| T11803 |
1739-1741 |
, |
denotes |
, |
| T11804 |
1741-1748 |
NN |
denotes |
mmKIF3C |
| T11805 |
1749-1750 |
-LRB- |
denotes |
( |
| T11806 |
1750-1759 |
NN |
denotes |
NP_032471 |
| T11807 |
1759-1760 |
-RRB- |
denotes |
) |
| T11808 |
1760-1762 |
, |
denotes |
, |
| T11809 |
1762-1769 |
NN |
denotes |
rnKIF3C |
| T11810 |
1770-1771 |
-LRB- |
denotes |
( |
| T11811 |
1771-1780 |
NN |
denotes |
NP_445938 |
| T11812 |
1780-1781 |
-RRB- |
denotes |
) |
| T11813 |
1781-1783 |
, |
denotes |
, |
| T11814 |
1783-1790 |
NN |
denotes |
dmKIF3C |
| T11815 |
1791-1792 |
-LRB- |
denotes |
( |
| T11816 |
1792-1801 |
NN |
denotes |
NP_651939 |
| T11817 |
1801-1802 |
-RRB- |
denotes |
) |
| T11818 |
1802-1803 |
. |
denotes |
. |
| T11819 |
1803-1871 |
sentence |
denotes |
These protein sequences were initially aligned with CLUSTAL X [38]. |
| T11820 |
1804-1809 |
DT |
denotes |
These |
| T11822 |
1810-1817 |
NN |
denotes |
protein |
| T11821 |
1818-1827 |
NNS |
denotes |
sequences |
| T11824 |
1828-1832 |
VBD |
denotes |
were |
| T11825 |
1833-1842 |
RB |
denotes |
initially |
| T11823 |
1843-1850 |
VBN |
denotes |
aligned |
| T11826 |
1851-1855 |
IN |
denotes |
with |
| T11827 |
1856-1863 |
NNP |
denotes |
CLUSTAL |
| T11828 |
1864-1865 |
NNP |
denotes |
X |
| T11829 |
1866-1867 |
-LRB- |
denotes |
[ |
| T11830 |
1867-1869 |
CD |
denotes |
38 |
| T11831 |
1869-1870 |
-RRB- |
denotes |
] |
| T11832 |
1870-1871 |
. |
denotes |
. |
| T11833 |
1871-2207 |
sentence |
denotes |
Minor adjustments to certain regions of the alignment for optimization purposes were made based on pairwise alignments, the output saved in PHYLIP format, after which, the distances between proteins were calculated using Poisson correction and the Unrooted trees were inferred with the NJ method and then displayed using TreeView [39]. |
| T11834 |
1872-1877 |
JJ |
denotes |
Minor |
| T11835 |
1878-1889 |
NNS |
denotes |
adjustments |
| T11837 |
1890-1892 |
IN |
denotes |
to |
| T11838 |
1893-1900 |
JJ |
denotes |
certain |
| T11839 |
1901-1908 |
NNS |
denotes |
regions |
| T11840 |
1909-1911 |
IN |
denotes |
of |
| T11841 |
1912-1915 |
DT |
denotes |
the |
| T11842 |
1916-1925 |
NN |
denotes |
alignment |
| T11843 |
1926-1929 |
IN |
denotes |
for |
| T11844 |
1930-1942 |
NN |
denotes |
optimization |
| T11845 |
1943-1951 |
NNS |
denotes |
purposes |
| T11846 |
1952-1956 |
VBD |
denotes |
were |
| T11836 |
1957-1961 |
VBN |
denotes |
made |
| T11848 |
1962-1967 |
VBN |
denotes |
based |
| T11849 |
1968-1970 |
IN |
denotes |
on |
| T11850 |
1971-1979 |
JJ |
denotes |
pairwise |
| T11851 |
1980-1990 |
NNS |
denotes |
alignments |
| T11852 |
1990-1992 |
, |
denotes |
, |
| T11853 |
1992-1995 |
DT |
denotes |
the |
| T11854 |
1996-2002 |
NN |
denotes |
output |
| T11847 |
2003-2008 |
VBD |
denotes |
saved |
| T11855 |
2009-2011 |
IN |
denotes |
in |
| T11856 |
2012-2018 |
NN |
denotes |
PHYLIP |
| T11857 |
2019-2025 |
NN |
denotes |
format |
| T11858 |
2025-2027 |
, |
denotes |
, |
| T11859 |
2027-2032 |
IN |
denotes |
after |
| T11861 |
2033-2038 |
WDT |
denotes |
which |
| T11862 |
2038-2040 |
, |
denotes |
, |
| T11863 |
2040-2043 |
DT |
denotes |
the |
| T11864 |
2044-2053 |
NNS |
denotes |
distances |
| T11865 |
2054-2061 |
IN |
denotes |
between |
| T11866 |
2062-2070 |
NN |
denotes |
proteins |
| T11867 |
2071-2075 |
VBD |
denotes |
were |
| T11860 |
2076-2086 |
VBN |
denotes |
calculated |
| T11868 |
2087-2092 |
VBG |
denotes |
using |
| T11869 |
2093-2100 |
NNP |
denotes |
Poisson |
| T11870 |
2101-2111 |
NN |
denotes |
correction |
| T11871 |
2112-2115 |
CC |
denotes |
and |
| T11872 |
2116-2119 |
DT |
denotes |
the |
| T11874 |
2120-2128 |
JJ |
denotes |
Unrooted |
| T11873 |
2129-2134 |
NNS |
denotes |
trees |
| T11876 |
2135-2139 |
VBD |
denotes |
were |
| T11875 |
2140-2148 |
VBN |
denotes |
inferred |
| T11877 |
2149-2153 |
IN |
denotes |
with |
| T11878 |
2154-2157 |
DT |
denotes |
the |
| T11880 |
2158-2160 |
NN |
denotes |
NJ |
| T11879 |
2161-2167 |
NN |
denotes |
method |
| T11881 |
2168-2171 |
CC |
denotes |
and |
| T11882 |
2172-2176 |
RB |
denotes |
then |
| T11883 |
2177-2186 |
VBD |
denotes |
displayed |
| T11884 |
2187-2192 |
VBG |
denotes |
using |
| T11885 |
2193-2201 |
NNP |
denotes |
TreeView |
| T11886 |
2202-2203 |
-LRB- |
denotes |
[ |
| T11887 |
2203-2205 |
CD |
denotes |
39 |
| T11888 |
2205-2206 |
-RRB- |
denotes |
] |
| T11889 |
2206-2207 |
. |
denotes |
. |
| T11890 |
2207-2273 |
sentence |
denotes |
Bootstrap values above 700 for 1000 trials are shown at the node. |
| T11891 |
2208-2217 |
NN |
denotes |
Bootstrap |
| T11892 |
2218-2224 |
NNS |
denotes |
values |
| T11894 |
2225-2230 |
IN |
denotes |
above |
| T11895 |
2231-2234 |
CD |
denotes |
700 |
| T11896 |
2235-2238 |
IN |
denotes |
for |
| T11897 |
2239-2243 |
CD |
denotes |
1000 |
| T11898 |
2244-2250 |
NNS |
denotes |
trials |
| T11899 |
2251-2254 |
VBP |
denotes |
are |
| T11893 |
2255-2260 |
VBN |
denotes |
shown |
| T11900 |
2261-2263 |
IN |
denotes |
at |
| T11901 |
2264-2267 |
DT |
denotes |
the |
| T11902 |
2268-2272 |
NN |
denotes |
node |
| T11903 |
2272-2273 |
. |
denotes |
. |
| T11904 |
2273-2449 |
sentence |
denotes |
To validate the tree, the same sequence set was analyzed with tools in the PHYLIP package [40], using PRODIST followed by FITCH or NEIGNBOR and tree displaying using TreeView. |
| T11905 |
2274-2276 |
TO |
denotes |
To |
| T11906 |
2277-2285 |
VB |
denotes |
validate |
| T11908 |
2286-2289 |
DT |
denotes |
the |
| T11909 |
2290-2294 |
NN |
denotes |
tree |
| T11910 |
2294-2296 |
, |
denotes |
, |
| T11911 |
2296-2299 |
DT |
denotes |
the |
| T11913 |
2300-2304 |
JJ |
denotes |
same |
| T11914 |
2305-2313 |
NN |
denotes |
sequence |
| T11912 |
2314-2317 |
NN |
denotes |
set |
| T11915 |
2318-2321 |
VBD |
denotes |
was |
| T11907 |
2322-2330 |
VBN |
denotes |
analyzed |
| T11916 |
2331-2335 |
IN |
denotes |
with |
| T11917 |
2336-2341 |
NNS |
denotes |
tools |
| T11918 |
2342-2344 |
IN |
denotes |
in |
| T11919 |
2345-2348 |
DT |
denotes |
the |
| T11921 |
2349-2355 |
NN |
denotes |
PHYLIP |
| T11920 |
2356-2363 |
NN |
denotes |
package |
| T11922 |
2364-2365 |
-LRB- |
denotes |
[ |
| T11923 |
2365-2367 |
CD |
denotes |
40 |
| T11924 |
2367-2368 |
-RRB- |
denotes |
] |
| T11925 |
2368-2370 |
, |
denotes |
, |
| T11926 |
2370-2375 |
VBG |
denotes |
using |
| T11927 |
2376-2383 |
NN |
denotes |
PRODIST |
| T11928 |
2384-2392 |
VBN |
denotes |
followed |
| T11929 |
2393-2395 |
IN |
denotes |
by |
| T11930 |
2396-2401 |
NN |
denotes |
FITCH |
| T11931 |
2402-2404 |
CC |
denotes |
or |
| T11932 |
2405-2413 |
NN |
denotes |
NEIGNBOR |
| T11933 |
2414-2417 |
CC |
denotes |
and |
| T11934 |
2418-2422 |
NN |
denotes |
tree |
| T11935 |
2423-2433 |
VBG |
denotes |
displaying |
| T11936 |
2434-2439 |
VBG |
denotes |
using |
| T11937 |
2440-2448 |
NNP |
denotes |
TreeView |
| T11938 |
2448-2449 |
. |
denotes |
. |
| T11939 |
2449-2540 |
sentence |
denotes |
This additional method produced trees with essentially the same topology (data not shown). |
| T11940 |
2450-2454 |
DT |
denotes |
This |
| T11942 |
2455-2465 |
JJ |
denotes |
additional |
| T11941 |
2466-2472 |
NN |
denotes |
method |
| T11943 |
2473-2481 |
VBD |
denotes |
produced |
| T11944 |
2482-2487 |
NNS |
denotes |
trees |
| T11945 |
2488-2492 |
IN |
denotes |
with |
| T11946 |
2493-2504 |
RB |
denotes |
essentially |
| T11948 |
2505-2508 |
DT |
denotes |
the |
| T11949 |
2509-2513 |
JJ |
denotes |
same |
| T11947 |
2514-2522 |
NN |
denotes |
topology |
| T11950 |
2523-2524 |
-LRB- |
denotes |
( |
| T11952 |
2524-2528 |
NNS |
denotes |
data |
| T11953 |
2529-2532 |
RB |
denotes |
not |
| T11951 |
2533-2538 |
VBN |
denotes |
shown |
| T11954 |
2538-2539 |
-RRB- |
denotes |
) |
| T11955 |
2539-2540 |
. |
denotes |
. |
| R7269 |
T11434 |
T11435 |
amod |
Phylogenetic,analysis |
| R7270 |
T11437 |
T11438 |
prep |
In,retrieved |
| R7271 |
T11439 |
T11437 |
pobj |
order,In |
| R7272 |
T11440 |
T11441 |
aux |
to,examine |
| R7273 |
T11441 |
T11439 |
acl |
examine,order |
| R7274 |
T11442 |
T11443 |
amod |
evolutionary,relationships |
| R7275 |
T11443 |
T11441 |
dobj |
relationships,examine |
| R7276 |
T11444 |
T11443 |
prep |
of,relationships |
| R7277 |
T11445 |
T11444 |
pobj |
proteins,of |
| R7278 |
T11446 |
T11445 |
acl |
containing,proteins |
| R7279 |
T11447 |
T11448 |
amod |
coiled,coil |
| R7280 |
T11448 |
T11449 |
compound |
coil,domains |
| R7281 |
T11449 |
T11446 |
dobj |
domains,containing |
| R7282 |
T11450 |
T11438 |
punct |
", ",retrieved |
| R7283 |
T11451 |
T11452 |
compound |
protein,sequences |
| R7284 |
T11452 |
T11438 |
nsubjpass |
sequences,retrieved |
| R7285 |
T11453 |
T11452 |
acl |
representing,sequences |
| R7286 |
T11454 |
T11455 |
det |
the,members |
| R7287 |
T11455 |
T11453 |
dobj |
members,representing |
| R7288 |
T11456 |
T11455 |
amod |
major,members |
| R7289 |
T11457 |
T11455 |
prep |
of,members |
| R7290 |
T11458 |
T11459 |
det |
this,family |
| R7291 |
T11459 |
T11457 |
pobj |
family,of |
| R7292 |
T11460 |
T11459 |
amod |
super,family |
| R7293 |
T11461 |
T11452 |
punct |
", ",sequences |
| R7294 |
T11462 |
T11452 |
prep |
including,sequences |
| R7295 |
T11463 |
T11462 |
pobj |
TACC,including |
| R7296 |
T11464 |
T11463 |
punct |
", ",TACC |
| R7297 |
T11465 |
T11463 |
conj |
RHAMM,TACC |
| R7298 |
T11466 |
T11465 |
punct |
", ",RHAMM |
| R7299 |
T11467 |
T11465 |
conj |
KLP,RHAMM |
| R7300 |
T11468 |
T11467 |
punct |
", ",KLP |
| R7301 |
T11469 |
T11467 |
conj |
keratin,KLP |
| R7302 |
T11470 |
T11469 |
cc |
and,keratin |
| R7303 |
T11471 |
T11469 |
conj |
tropomyosin,keratin |
| R7304 |
T11472 |
T11452 |
prep |
from,sequences |
| R7305 |
T11473 |
T11474 |
amod |
available,vertebrates |
| R7306 |
T11474 |
T11472 |
pobj |
vertebrates,from |
| R7307 |
T11475 |
T11474 |
cc |
and,vertebrates |
| R7308 |
T11476 |
T11477 |
poss |
their,orthologues |
| R7309 |
T11477 |
T11474 |
conj |
orthologues,vertebrates |
| R7310 |
T11478 |
T11477 |
amod |
recognizable,orthologues |
| R7311 |
T11479 |
T11477 |
prep |
from,orthologues |
| R7312 |
T11480 |
T11481 |
det |
the,urochordate |
| R7313 |
T11481 |
T11479 |
pobj |
urochordate,from |
| R7314 |
T11482 |
T11483 |
compound |
Ciona,intestinalis |
| R7315 |
T11483 |
T11481 |
appos |
intestinalis,urochordate |
| R7316 |
T11484 |
T11481 |
punct |
", ",urochordate |
| R7317 |
T11485 |
T11486 |
compound |
Drosophila,melanogaster |
| R7318 |
T11486 |
T11481 |
conj |
melanogaster,urochordate |
| R7319 |
T11487 |
T11486 |
punct |
", ",melanogaster |
| R7320 |
T11488 |
T11489 |
compound |
C.,elegans |
| R7321 |
T11489 |
T11486 |
conj |
elegans,melanogaster |
| R7322 |
T11490 |
T11489 |
cc |
and,elegans |
| R7323 |
T11491 |
T11492 |
compound |
Saccharomyces,cerevisiae |
| R7324 |
T11492 |
T11489 |
conj |
cerevisiae,elegans |
| R7325 |
T11493 |
T11438 |
auxpass |
were,retrieved |
| R7326 |
T11494 |
T11438 |
preconj |
either,retrieved |
| R7327 |
T11495 |
T11438 |
advmod |
directly,retrieved |
| R7328 |
T11496 |
T11438 |
prep |
from,retrieved |
| R7329 |
T11497 |
T11498 |
compound |
NCBI,databases |
| R7330 |
T11498 |
T11496 |
pobj |
databases,from |
| R7331 |
T11499 |
T11498 |
compound |
sequence,databases |
| R7332 |
T11500 |
T11498 |
punct |
", ",databases |
| R7333 |
T11501 |
T11502 |
advmod |
newly,predicted |
| R7334 |
T11502 |
T11498 |
acl |
predicted,databases |
| R7335 |
T11503 |
T11438 |
cc |
or,retrieved |
| R7336 |
T11504 |
T11438 |
conj |
isolated,retrieved |
| R7337 |
T11505 |
T11506 |
punct |
(,see |
| R7338 |
T11506 |
T11504 |
parataxis |
see,isolated |
| R7339 |
T11507 |
T11506 |
advmod |
above,see |
| R7340 |
T11508 |
T11506 |
punct |
),see |
| R7341 |
T11509 |
T11438 |
punct |
.,retrieved |
| R7342 |
T11511 |
T11512 |
compound |
Species,abbreviations |
| R7343 |
T11512 |
T11513 |
nsubj |
abbreviations,are |
| R7344 |
T11514 |
T11515 |
mark |
as,follows |
| R7345 |
T11515 |
T11513 |
advcl |
follows,are |
| R7346 |
T11516 |
T11513 |
punct |
: ,are |
| R7347 |
T11517 |
T11513 |
dep |
hs,are |
| R7348 |
T11518 |
T11517 |
punct |
(,hs |
| R7349 |
T11519 |
T11520 |
compound |
Homo,sapiens |
| R7350 |
T11520 |
T11517 |
appos |
sapiens,hs |
| R7351 |
T11521 |
T11517 |
punct |
),hs |
| R7352 |
T11522 |
T11517 |
punct |
", ",hs |
| R7353 |
T11523 |
T11517 |
appos |
mm,hs |
| R7354 |
T11524 |
T11523 |
punct |
(,mm |
| R7355 |
T11525 |
T11526 |
compound |
Mus,musculus |
| R7356 |
T11526 |
T11523 |
appos |
musculus,mm |
| R7357 |
T11527 |
T11517 |
punct |
),hs |
| R7358 |
T11528 |
T11517 |
punct |
", ",hs |
| R7359 |
T11529 |
T11517 |
appos |
rn,hs |
| R7360 |
T11530 |
T11529 |
punct |
(,rn |
| R7361 |
T11531 |
T11532 |
compound |
Rattus,norvegus |
| R7362 |
T11532 |
T11529 |
appos |
norvegus,rn |
| R7363 |
T11533 |
T11517 |
punct |
),hs |
| R7364 |
T11534 |
T11517 |
punct |
", ",hs |
| R7365 |
T11535 |
T11517 |
appos |
oc,hs |
| R7366 |
T11536 |
T11535 |
punct |
(,oc |
| R7367 |
T11537 |
T11538 |
compound |
Oryctolagus,cuniculus |
| R7368 |
T11538 |
T11535 |
appos |
cuniculus,oc |
| R7369 |
T11539 |
T11517 |
punct |
),hs |
| R7370 |
T11540 |
T11517 |
punct |
", ",hs |
| R7371 |
T11541 |
T11517 |
appos |
gg,hs |
| R7372 |
T11542 |
T11541 |
punct |
(,gg |
| R7373 |
T11543 |
T11544 |
compound |
Gallus,gallus |
| R7374 |
T11544 |
T11541 |
appos |
gallus,gg |
| R7375 |
T11545 |
T11517 |
punct |
),hs |
| R7376 |
T11546 |
T11517 |
punct |
", ",hs |
| R7377 |
T11547 |
T11517 |
appos |
xl,hs |
| R7378 |
T11548 |
T11547 |
punct |
(,xl |
| R7379 |
T11549 |
T11550 |
compound |
Xenopus,laevis |
| R7380 |
T11550 |
T11547 |
appos |
laevis,xl |
| R7381 |
T11551 |
T11517 |
punct |
),hs |
| R7382 |
T11552 |
T11517 |
punct |
", ",hs |
| R7383 |
T11553 |
T11517 |
appos |
st,hs |
| R7384 |
T11554 |
T11553 |
punct |
(,st |
| R7385 |
T11555 |
T11556 |
compound |
Silurana,tropicalis |
| R7386 |
T11556 |
T11553 |
appos |
tropicalis,st |
| R7387 |
T11557 |
T11517 |
punct |
),hs |
| R7388 |
T11558 |
T11517 |
punct |
", ",hs |
| R7389 |
T11559 |
T11517 |
appos |
tr,hs |
| R7390 |
T11560 |
T11559 |
punct |
(,tr |
| R7391 |
T11561 |
T11562 |
compound |
Takifugu,rubripes |
| R7392 |
T11562 |
T11559 |
appos |
rubripes,tr |
| R7393 |
T11563 |
T11517 |
punct |
),hs |
| R7394 |
T11564 |
T11517 |
punct |
", ",hs |
| R7395 |
T11565 |
T11517 |
appos |
dr,hs |
| R7396 |
T11566 |
T11565 |
punct |
(,dr |
| R7397 |
T11567 |
T11568 |
compound |
Danio,rerio |
| R7398 |
T11568 |
T11565 |
appos |
rerio,dr |
| R7399 |
T11569 |
T11517 |
punct |
),hs |
| R7400 |
T11570 |
T11517 |
punct |
", ",hs |
| R7401 |
T11571 |
T11517 |
appos |
ci,hs |
| R7402 |
T11572 |
T11571 |
punct |
(,ci |
| R7403 |
T11573 |
T11574 |
compound |
Ciona,intestinalis |
| R7404 |
T11574 |
T11571 |
appos |
intestinalis,ci |
| R7405 |
T11575 |
T11517 |
punct |
),hs |
| R7406 |
T11576 |
T11517 |
punct |
", ",hs |
| R7407 |
T11577 |
T11517 |
appos |
dm,hs |
| R7408 |
T11578 |
T11577 |
punct |
(,dm |
| R7409 |
T11579 |
T11580 |
compound |
D.,melanogaster |
| R7410 |
T11580 |
T11577 |
appos |
melanogaster,dm |
| R7411 |
T11581 |
T11517 |
punct |
),hs |
| R7412 |
T11582 |
T11517 |
punct |
", ",hs |
| R7413 |
T11583 |
T11517 |
appos |
ce,hs |
| R7414 |
T11584 |
T11583 |
punct |
(,ce |
| R7415 |
T11585 |
T11586 |
compound |
C.,elegans |
| R7416 |
T11586 |
T11583 |
appos |
elegans,ce |
| R7417 |
T11587 |
T11517 |
punct |
),hs |
| R7418 |
T11588 |
T11517 |
punct |
", ",hs |
| R7419 |
T11589 |
T11517 |
appos |
sc,hs |
| R7420 |
T11590 |
T11589 |
punct |
(,sc |
| R7421 |
T11591 |
T11592 |
compound |
Saccharomyces,cerevisiae |
| R7422 |
T11592 |
T11589 |
appos |
cerevisiae,sc |
| R7423 |
T11593 |
T11517 |
punct |
),hs |
| R7424 |
T11594 |
T11513 |
punct |
.,are |
| R7425 |
T11596 |
T11597 |
det |
The,sequences |
| R7426 |
T11597 |
T11598 |
nsubjpass |
sequences,used |
| R7427 |
T11599 |
T11597 |
acl |
identified,sequences |
| R7428 |
T11600 |
T11599 |
advmod |
above,identified |
| R7429 |
T11601 |
T11597 |
cc |
and,sequences |
| R7430 |
T11602 |
T11603 |
det |
the,translations |
| R7431 |
T11603 |
T11597 |
conj |
translations,sequences |
| R7432 |
T11604 |
T11603 |
amod |
following,translations |
| R7433 |
T11605 |
T11603 |
nmod |
protein,translations |
| R7434 |
T11606 |
T11605 |
cc |
or,protein |
| R7435 |
T11607 |
T11605 |
conj |
predicted,protein |
| R7436 |
T11608 |
T11598 |
auxpass |
were,used |
| R7437 |
T11609 |
T11598 |
prep |
for,used |
| R7438 |
T11610 |
T11611 |
amod |
phylogenetic,analysis |
| R7439 |
T11611 |
T11609 |
pobj |
analysis,for |
| R7440 |
T11612 |
T11598 |
punct |
: ,used |
| R7441 |
T11613 |
T11598 |
dep |
hsTACC1A,used |
| R7442 |
T11614 |
T11615 |
punct |
(,NP_006274 |
| R7443 |
T11615 |
T11613 |
parataxis |
NP_006274,hsTACC1A |
| R7444 |
T11616 |
T11615 |
punct |
),NP_006274 |
| R7445 |
T11617 |
T11613 |
punct |
", ",hsTACC1A |
| R7446 |
T11618 |
T11613 |
appos |
hsTACC2l,hsTACC1A |
| R7447 |
T11619 |
T11620 |
punct |
(,AAO62630 |
| R7448 |
T11620 |
T11618 |
parataxis |
AAO62630,hsTACC2l |
| R7449 |
T11621 |
T11620 |
punct |
),AAO62630 |
| R7450 |
T11622 |
T11613 |
appos |
hsTACC2s,hsTACC1A |
| R7451 |
T11623 |
T11624 |
punct |
(,AAO62629 |
| R7452 |
T11624 |
T11622 |
parataxis |
AAO62629,hsTACC2s |
| R7453 |
T11625 |
T11624 |
punct |
),AAO62629 |
| R7454 |
T11626 |
T11613 |
punct |
", ",hsTACC1A |
| R7455 |
T11627 |
T11613 |
appos |
hsTACC3,hsTACC1A |
| R7456 |
T11628 |
T11629 |
punct |
(,NP_006333 |
| R7457 |
T11629 |
T11627 |
parataxis |
NP_006333,hsTACC3 |
| R7458 |
T11630 |
T11629 |
punct |
),NP_006333 |
| R7459 |
T11631 |
T11613 |
punct |
", ",hsTACC1A |
| R7460 |
T11632 |
T11613 |
appos |
mmTACC3,hsTACC1A |
| R7461 |
T11633 |
T11634 |
punct |
(,Q9JJ11 |
| R7462 |
T11634 |
T11632 |
parataxis |
Q9JJ11,mmTACC3 |
| R7463 |
T11635 |
T11634 |
punct |
),Q9JJ11 |
| R7464 |
T11636 |
T11613 |
punct |
", ",hsTACC1A |
| R7465 |
T11637 |
T11613 |
appos |
xlMaskin,hsTACC1A |
| R7466 |
T11638 |
T11639 |
punct |
(,Q9PTG8 |
| R7467 |
T11639 |
T11637 |
parataxis |
Q9PTG8,xlMaskin |
| R7468 |
T11640 |
T11639 |
punct |
),Q9PTG8 |
| R7469 |
T11641 |
T11613 |
punct |
", ",hsTACC1A |
| R7470 |
T11642 |
T11613 |
appos |
dmTACC,hsTACC1A |
| R7471 |
T11643 |
T11644 |
punct |
(,AAF52099 |
| R7472 |
T11644 |
T11642 |
parataxis |
AAF52099,dmTACC |
| R7473 |
T11645 |
T11644 |
punct |
),AAF52099 |
| R7474 |
T11646 |
T11613 |
punct |
", ",hsTACC1A |
| R7475 |
T11647 |
T11613 |
appos |
ceTAC1,hsTACC1A |
| R7476 |
T11648 |
T11649 |
punct |
(,NP_497059 |
| R7477 |
T11649 |
T11647 |
parataxis |
NP_497059,ceTAC1 |
| R7478 |
T11650 |
T11649 |
punct |
),NP_497059 |
| R7479 |
T11651 |
T11613 |
punct |
", ",hsTACC1A |
| R7480 |
T11652 |
T11613 |
appos |
scSPC72,hsTACC1A |
| R7481 |
T11653 |
T11654 |
punct |
(,NP_009352 |
| R7482 |
T11654 |
T11652 |
parataxis |
NP_009352,scSPC72 |
| R7483 |
T11655 |
T11654 |
punct |
),NP_009352 |
| R7484 |
T11656 |
T11613 |
punct |
", ",hsTACC1A |
| R7485 |
T11657 |
T11613 |
appos |
hsRHAMM,hsTACC1A |
| R7486 |
T11658 |
T11659 |
punct |
(,NP_036616 |
| R7487 |
T11659 |
T11657 |
parataxis |
NP_036616,hsRHAMM |
| R7488 |
T11660 |
T11659 |
punct |
),NP_036616 |
| R7489 |
T11661 |
T11613 |
punct |
", ",hsTACC1A |
| R7490 |
T11662 |
T11613 |
appos |
mmRHAMM,hsTACC1A |
| R7491 |
T11663 |
T11664 |
punct |
(,NP_038580 |
| R7492 |
T11664 |
T11662 |
parataxis |
NP_038580,mmRHAMM |
| R7493 |
T11665 |
T11664 |
punct |
),NP_038580 |
| R7494 |
T11666 |
T11613 |
punct |
", ",hsTACC1A |
| R7495 |
T11667 |
T11613 |
appos |
rnRHAMM,hsTACC1A |
| R7496 |
T11668 |
T11669 |
punct |
(,NP_037096 |
| R7497 |
T11669 |
T11667 |
parataxis |
NP_037096,rnRHAMM |
| R7498 |
T11670 |
T11669 |
punct |
),NP_037096 |
| R7499 |
T11671 |
T11613 |
punct |
", ",hsTACC1A |
| R7500 |
T11672 |
T11613 |
appos |
drRHAMM,hsTACC1A |
| R7501 |
T11673 |
T11674 |
punct |
(,AAQ97980 |
| R7502 |
T11674 |
T11672 |
parataxis |
AAQ97980,drRHAMM |
| R7503 |
T11675 |
T11674 |
punct |
),AAQ97980 |
| R7504 |
T11676 |
T11613 |
punct |
", ",hsTACC1A |
| R7505 |
T11677 |
T11613 |
appos |
hsKeratin,hsTACC1A |
| R7506 |
T11678 |
T11679 |
punct |
(,CAB76828 |
| R7507 |
T11679 |
T11677 |
parataxis |
CAB76828,hsKeratin |
| R7508 |
T11680 |
T11679 |
punct |
),CAB76828 |
| R7509 |
T11681 |
T11613 |
punct |
", ",hsTACC1A |
| R7510 |
T11682 |
T11613 |
appos |
mmKeratin,hsTACC1A |
| R7511 |
T11683 |
T11684 |
punct |
(,A61368 |
| R7512 |
T11684 |
T11682 |
parataxis |
A61368,mmKeratin |
| R7513 |
T11685 |
T11684 |
punct |
),A61368 |
| R7514 |
T11686 |
T11613 |
punct |
", ",hsTACC1A |
| R7515 |
T11687 |
T11613 |
appos |
rnKeratin,hsTACC1A |
| R7516 |
T11688 |
T11689 |
punct |
(,XP_235679 |
| R7517 |
T11689 |
T11687 |
parataxis |
XP_235679,rnKeratin |
| R7518 |
T11690 |
T11689 |
punct |
),XP_235679 |
| R7519 |
T11691 |
T11613 |
punct |
", ",hsTACC1A |
| R7520 |
T11692 |
T11613 |
appos |
hsTPM1,hsTACC1A |
| R7521 |
T11693 |
T11694 |
punct |
(,NP_000357 |
| R7522 |
T11694 |
T11692 |
parataxis |
NP_000357,hsTPM1 |
| R7523 |
T11695 |
T11694 |
punct |
),NP_000357 |
| R7524 |
T11696 |
T11613 |
punct |
", ",hsTACC1A |
| R7525 |
T11697 |
T11613 |
appos |
mmTPM1,hsTACC1A |
| R7526 |
T11698 |
T11699 |
punct |
(,NP_077745 |
| R7527 |
T11699 |
T11697 |
parataxis |
NP_077745,mmTPM1 |
| R7528 |
T11700 |
T11699 |
punct |
),NP_077745 |
| R7529 |
T11701 |
T11613 |
punct |
", ",hsTACC1A |
| R7530 |
T11702 |
T11613 |
appos |
rnTPM1,hsTACC1A |
| R7531 |
T11703 |
T11704 |
punct |
(,NP_62004 |
| R7532 |
T11704 |
T11702 |
parataxis |
NP_62004,rnTPM1 |
| R7533 |
T11705 |
T11613 |
punct |
", ",hsTACC1A |
| R7534 |
T11706 |
T11613 |
appos |
drTPM1,hsTACC1A |
| R7535 |
T11707 |
T11708 |
punct |
(,NP_571180 |
| R7536 |
T11708 |
T11706 |
parataxis |
NP_571180,drTPM1 |
| R7537 |
T11709 |
T11708 |
punct |
),NP_571180 |
| R7538 |
T11710 |
T11613 |
appos |
dmTPM1,hsTACC1A |
| R7539 |
T11711 |
T11712 |
punct |
(,P06754 |
| R7540 |
T11712 |
T11710 |
parataxis |
P06754,dmTPM1 |
| R7541 |
T11713 |
T11712 |
punct |
),P06754 |
| R7542 |
T11714 |
T11613 |
punct |
", ",hsTACC1A |
| R7543 |
T11715 |
T11613 |
appos |
ceTPM,hsTACC1A |
| R7544 |
T11716 |
T11717 |
punct |
(,NP_493540 |
| R7545 |
T11717 |
T11715 |
parataxis |
NP_493540,ceTPM |
| R7546 |
T11718 |
T11717 |
punct |
),NP_493540 |
| R7547 |
T11719 |
T11613 |
appos |
scTPM1,hsTACC1A |
| R7548 |
T11720 |
T11721 |
punct |
(,P17536 |
| R7549 |
T11721 |
T11719 |
parataxis |
P17536,scTPM1 |
| R7550 |
T11722 |
T11721 |
punct |
),P17536 |
| R7551 |
T11723 |
T11613 |
punct |
", ",hsTACC1A |
| R7552 |
T11724 |
T11613 |
appos |
hsKLP2,hsTACC1A |
| R7553 |
T11725 |
T11726 |
punct |
(,BAB03309 |
| R7554 |
T11726 |
T11724 |
parataxis |
BAB03309,hsKLP2 |
| R7555 |
T11727 |
T11726 |
punct |
),BAB03309 |
| R7556 |
T11728 |
T11613 |
punct |
", ",hsTACC1A |
| R7557 |
T11729 |
T11613 |
appos |
rnKIF15,hsTACC1A |
| R7558 |
T11730 |
T11731 |
punct |
(,AAP44513 |
| R7559 |
T11731 |
T11729 |
parataxis |
AAP44513,rnKIF15 |
| R7560 |
T11732 |
T11731 |
punct |
),AAP44513 |
| R7561 |
T11733 |
T11613 |
punct |
", ",hsTACC1A |
| R7562 |
T11734 |
T11613 |
appos |
xlKLP2,hsTACC1A |
| R7563 |
T11735 |
T11736 |
punct |
(,CAA08879 |
| R7564 |
T11736 |
T11734 |
parataxis |
CAA08879,xlKLP2 |
| R7565 |
T11737 |
T11736 |
punct |
),CAA08879 |
| R7566 |
T11738 |
T11613 |
punct |
", ",hsTACC1A |
| R7567 |
T11739 |
T11613 |
appos |
dmKLP2,hsTACC1A |
| R7568 |
T11740 |
T11741 |
punct |
(,NP_476818 |
| R7569 |
T11741 |
T11739 |
parataxis |
NP_476818,dmKLP2 |
| R7570 |
T11742 |
T11741 |
punct |
),NP_476818 |
| R7571 |
T11743 |
T11613 |
punct |
", ",hsTACC1A |
| R7572 |
T11744 |
T11613 |
appos |
ceKLP18,hsTACC1A |
| R7573 |
T11745 |
T11746 |
punct |
(,AA034669 |
| R7574 |
T11746 |
T11744 |
parataxis |
AA034669,ceKLP18 |
| R7575 |
T11747 |
T11746 |
punct |
),AA034669 |
| R7576 |
T11748 |
T11613 |
punct |
", ",hsTACC1A |
| R7577 |
T11749 |
T11613 |
appos |
hsKIF3A,hsTACC1A |
| R7578 |
T11750 |
T11751 |
punct |
(,Q9Y496 |
| R7579 |
T11751 |
T11749 |
parataxis |
Q9Y496,hsKIF3A |
| R7580 |
T11752 |
T11751 |
punct |
),Q9Y496 |
| R7581 |
T11753 |
T11613 |
punct |
", ",hsTACC1A |
| R7582 |
T11754 |
T11613 |
appos |
mmKIF3A,hsTACC1A |
| R7583 |
T11755 |
T11756 |
punct |
(,NP_032469 |
| R7584 |
T11756 |
T11754 |
parataxis |
NP_032469,mmKIF3A |
| R7585 |
T11757 |
T11756 |
punct |
),NP_032469 |
| R7586 |
T11758 |
T11613 |
punct |
", ",hsTACC1A |
| R7587 |
T11759 |
T11613 |
appos |
rnKIF3A,hsTACC1A |
| R7588 |
T11760 |
T11761 |
punct |
(,XP_340797 |
| R7589 |
T11761 |
T11759 |
parataxis |
XP_340797,rnKIF3A |
| R7590 |
T11762 |
T11761 |
punct |
),XP_340797 |
| R7591 |
T11763 |
T11613 |
punct |
", ",hsTACC1A |
| R7592 |
T11764 |
T11613 |
appos |
xlKIF3A,hsTACC1A |
| R7593 |
T11765 |
T11766 |
punct |
(,CAA08879 |
| R7594 |
T11766 |
T11764 |
parataxis |
CAA08879,xlKIF3A |
| R7595 |
T11767 |
T11766 |
punct |
),CAA08879 |
| R7596 |
T11768 |
T11613 |
punct |
", ",hsTACC1A |
| R7597 |
T11769 |
T11613 |
appos |
ceKLP11,hsTACC1A |
| R7598 |
T11770 |
T11771 |
punct |
(,NP_741473 |
| R7599 |
T11771 |
T11769 |
parataxis |
NP_741473,ceKLP11 |
| R7600 |
T11772 |
T11771 |
punct |
),NP_741473 |
| R7601 |
T11773 |
T11613 |
punct |
", ",hsTACC1A |
| R7602 |
T11774 |
T11613 |
appos |
ciKIF3,hsTACC1A |
| R7603 |
T11775 |
T11776 |
punct |
(,ci0100148992 |
| R7604 |
T11776 |
T11774 |
parataxis |
ci0100148992,ciKIF3 |
| R7605 |
T11777 |
T11776 |
punct |
),ci0100148992 |
| R7606 |
T11778 |
T11613 |
punct |
", ",hsTACC1A |
| R7607 |
T11779 |
T11613 |
appos |
hsKIF3B,hsTACC1A |
| R7608 |
T11780 |
T11781 |
punct |
(,NP_004789 |
| R7609 |
T11781 |
T11779 |
parataxis |
NP_004789,hsKIF3B |
| R7610 |
T11782 |
T11781 |
punct |
),NP_004789 |
| R7611 |
T11783 |
T11613 |
punct |
", ",hsTACC1A |
| R7612 |
T11784 |
T11613 |
appos |
mmKIF3B,hsTACC1A |
| R7613 |
T11785 |
T11786 |
punct |
(,NP_004789 |
| R7614 |
T11786 |
T11784 |
parataxis |
NP_004789,mmKIF3B |
| R7615 |
T11787 |
T11786 |
punct |
),NP_004789 |
| R7616 |
T11788 |
T11613 |
punct |
", ",hsTACC1A |
| R7617 |
T11789 |
T11613 |
appos |
rnKIF3B,hsTACC1A |
| R7618 |
T11790 |
T11791 |
punct |
(,XP_215883 |
| R7619 |
T11791 |
T11789 |
parataxis |
XP_215883,rnKIF3B |
| R7620 |
T11792 |
T11791 |
punct |
),XP_215883 |
| R7621 |
T11793 |
T11613 |
punct |
", ",hsTACC1A |
| R7622 |
T11794 |
T11613 |
appos |
dmKIF3B,hsTACC1A |
| R7623 |
T11795 |
T11796 |
punct |
(,NP_524029 |
| R7624 |
T11796 |
T11794 |
parataxis |
NP_524029,dmKIF3B |
| R7625 |
T11797 |
T11796 |
punct |
),NP_524029 |
| R7626 |
T11798 |
T11613 |
punct |
", ",hsTACC1A |
| R7627 |
T11799 |
T11613 |
appos |
hsKIF3C,hsTACC1A |
| R7628 |
T11800 |
T11801 |
punct |
(,NP_002245 |
| R7629 |
T11801 |
T11799 |
parataxis |
NP_002245,hsKIF3C |
| R7630 |
T11802 |
T11801 |
punct |
),NP_002245 |
| R7631 |
T11803 |
T11613 |
punct |
", ",hsTACC1A |
| R7632 |
T11804 |
T11613 |
appos |
mmKIF3C,hsTACC1A |
| R7633 |
T11805 |
T11806 |
punct |
(,NP_032471 |
| R7634 |
T11806 |
T11804 |
parataxis |
NP_032471,mmKIF3C |
| R7635 |
T11807 |
T11806 |
punct |
),NP_032471 |
| R7636 |
T11808 |
T11613 |
punct |
", ",hsTACC1A |
| R7637 |
T11809 |
T11613 |
appos |
rnKIF3C,hsTACC1A |
| R7638 |
T11810 |
T11811 |
punct |
(,NP_445938 |
| R7639 |
T11811 |
T11809 |
parataxis |
NP_445938,rnKIF3C |
| R7640 |
T11812 |
T11811 |
punct |
),NP_445938 |
| R7641 |
T11813 |
T11613 |
punct |
", ",hsTACC1A |
| R7642 |
T11814 |
T11613 |
appos |
dmKIF3C,hsTACC1A |
| R7643 |
T11815 |
T11816 |
punct |
(,NP_651939 |
| R7644 |
T11816 |
T11814 |
parataxis |
NP_651939,dmKIF3C |
| R7645 |
T11817 |
T11816 |
punct |
),NP_651939 |
| R7646 |
T11818 |
T11598 |
punct |
.,used |
| R7647 |
T11820 |
T11821 |
det |
These,sequences |
| R7648 |
T11821 |
T11823 |
nsubjpass |
sequences,aligned |
| R7649 |
T11822 |
T11821 |
compound |
protein,sequences |
| R7650 |
T11824 |
T11823 |
auxpass |
were,aligned |
| R7651 |
T11825 |
T11823 |
advmod |
initially,aligned |
| R7652 |
T11826 |
T11823 |
prep |
with,aligned |
| R7653 |
T11827 |
T11828 |
compound |
CLUSTAL,X |
| R7654 |
T11828 |
T11826 |
pobj |
X,with |
| R7655 |
T11829 |
T11830 |
punct |
[,38 |
| R7656 |
T11830 |
T11823 |
parataxis |
38,aligned |
| R7657 |
T11831 |
T11830 |
punct |
],38 |
| R7658 |
T11832 |
T11823 |
punct |
.,aligned |
| R7659 |
T11834 |
T11835 |
amod |
Minor,adjustments |
| R7660 |
T11835 |
T11836 |
nsubjpass |
adjustments,made |
| R7661 |
T11836 |
T11847 |
ccomp |
made,saved |
| R7662 |
T11837 |
T11835 |
prep |
to,adjustments |
| R7663 |
T11838 |
T11839 |
amod |
certain,regions |
| R7664 |
T11839 |
T11837 |
pobj |
regions,to |
| R7665 |
T11840 |
T11839 |
prep |
of,regions |
| R7666 |
T11841 |
T11842 |
det |
the,alignment |
| R7667 |
T11842 |
T11840 |
pobj |
alignment,of |
| R7668 |
T11843 |
T11835 |
prep |
for,adjustments |
| R7669 |
T11844 |
T11845 |
compound |
optimization,purposes |
| R7670 |
T11845 |
T11843 |
pobj |
purposes,for |
| R7671 |
T11846 |
T11836 |
auxpass |
were,made |
| R7672 |
T11848 |
T11836 |
prep |
based,made |
| R7673 |
T11849 |
T11848 |
prep |
on,based |
| R7674 |
T11850 |
T11851 |
amod |
pairwise,alignments |
| R7675 |
T11851 |
T11849 |
pobj |
alignments,on |
| R7676 |
T11852 |
T11847 |
punct |
", ",saved |
| R7677 |
T11853 |
T11854 |
det |
the,output |
| R7678 |
T11854 |
T11847 |
nsubj |
output,saved |
| R7679 |
T11855 |
T11847 |
prep |
in,saved |
| R7680 |
T11856 |
T11857 |
compound |
PHYLIP,format |
| R7681 |
T11857 |
T11855 |
pobj |
format,in |
| R7682 |
T11858 |
T11847 |
punct |
", ",saved |
| R7683 |
T11859 |
T11860 |
prep |
after,calculated |
| R7684 |
T11860 |
T11847 |
advcl |
calculated,saved |
| R7685 |
T11861 |
T11859 |
pobj |
which,after |
| R7686 |
T11862 |
T11860 |
punct |
", ",calculated |
| R7687 |
T11863 |
T11864 |
det |
the,distances |
| R7688 |
T11864 |
T11860 |
nsubjpass |
distances,calculated |
| R7689 |
T11865 |
T11864 |
prep |
between,distances |
| R7690 |
T11866 |
T11865 |
pobj |
proteins,between |
| R7691 |
T11867 |
T11860 |
auxpass |
were,calculated |
| R7692 |
T11868 |
T11860 |
advcl |
using,calculated |
| R7693 |
T11869 |
T11870 |
compound |
Poisson,correction |
| R7694 |
T11870 |
T11868 |
dobj |
correction,using |
| R7695 |
T11871 |
T11860 |
cc |
and,calculated |
| R7696 |
T11872 |
T11873 |
det |
the,trees |
| R7697 |
T11873 |
T11875 |
nsubjpass |
trees,inferred |
| R7698 |
T11874 |
T11873 |
amod |
Unrooted,trees |
| R7699 |
T11875 |
T11860 |
conj |
inferred,calculated |
| R7700 |
T11876 |
T11875 |
auxpass |
were,inferred |
| R7701 |
T11877 |
T11875 |
prep |
with,inferred |
| R7702 |
T11878 |
T11879 |
det |
the,method |
| R7703 |
T11879 |
T11877 |
pobj |
method,with |
| R7704 |
T11880 |
T11879 |
compound |
NJ,method |
| R7705 |
T11881 |
T11875 |
cc |
and,inferred |
| R7706 |
T11882 |
T11883 |
advmod |
then,displayed |
| R7707 |
T11883 |
T11875 |
conj |
displayed,inferred |
| R7708 |
T11884 |
T11883 |
advcl |
using,displayed |
| R7709 |
T11885 |
T11884 |
dobj |
TreeView,using |
| R7710 |
T11886 |
T11887 |
punct |
[,39 |
| R7711 |
T11887 |
T11883 |
parataxis |
39,displayed |
| R7712 |
T11888 |
T11887 |
punct |
],39 |
| R7713 |
T11889 |
T11847 |
punct |
.,saved |
| R7714 |
T11891 |
T11892 |
compound |
Bootstrap,values |
| R7715 |
T11892 |
T11893 |
nsubjpass |
values,shown |
| R7716 |
T11894 |
T11892 |
prep |
above,values |
| R7717 |
T11895 |
T11894 |
pobj |
700,above |
| R7718 |
T11896 |
T11892 |
prep |
for,values |
| R7719 |
T11897 |
T11898 |
nummod |
1000,trials |
| R7720 |
T11898 |
T11896 |
pobj |
trials,for |
| R7721 |
T11899 |
T11893 |
auxpass |
are,shown |
| R7722 |
T11900 |
T11893 |
prep |
at,shown |
| R7723 |
T11901 |
T11902 |
det |
the,node |
| R7724 |
T11902 |
T11900 |
pobj |
node,at |
| R7725 |
T11903 |
T11893 |
punct |
.,shown |
| R7726 |
T11905 |
T11906 |
aux |
To,validate |
| R7727 |
T11906 |
T11907 |
advcl |
validate,analyzed |
| R7728 |
T11908 |
T11909 |
det |
the,tree |
| R7729 |
T11909 |
T11906 |
dobj |
tree,validate |
| R7730 |
T11910 |
T11907 |
punct |
", ",analyzed |
| R7731 |
T11911 |
T11912 |
det |
the,set |
| R7732 |
T11912 |
T11907 |
nsubjpass |
set,analyzed |
| R7733 |
T11913 |
T11912 |
amod |
same,set |
| R7734 |
T11914 |
T11912 |
compound |
sequence,set |
| R7735 |
T11915 |
T11907 |
auxpass |
was,analyzed |
| R7736 |
T11916 |
T11907 |
prep |
with,analyzed |
| R7737 |
T11917 |
T11916 |
pobj |
tools,with |
| R7738 |
T11918 |
T11917 |
prep |
in,tools |
| R7739 |
T11919 |
T11920 |
det |
the,package |
| R7740 |
T11920 |
T11918 |
pobj |
package,in |
| R7741 |
T11921 |
T11920 |
compound |
PHYLIP,package |
| R7742 |
T11922 |
T11923 |
punct |
[,40 |
| R7743 |
T11923 |
T11907 |
parataxis |
40,analyzed |
| R7744 |
T11924 |
T11923 |
punct |
],40 |
| R7745 |
T11925 |
T11907 |
punct |
", ",analyzed |
| R7746 |
T11926 |
T11907 |
advcl |
using,analyzed |
| R7747 |
T11927 |
T11926 |
dobj |
PRODIST,using |
| R7748 |
T11928 |
T11927 |
acl |
followed,PRODIST |
| R7749 |
T11929 |
T11928 |
agent |
by,followed |
| R7750 |
T11930 |
T11929 |
pobj |
FITCH,by |
| R7751 |
T11931 |
T11930 |
cc |
or,FITCH |
| R7752 |
T11932 |
T11930 |
conj |
NEIGNBOR,FITCH |
| R7753 |
T11933 |
T11926 |
cc |
and,using |
| R7754 |
T11934 |
T11935 |
dep |
tree,displaying |
| R7755 |
T11935 |
T11926 |
conj |
displaying,using |
| R7756 |
T11936 |
T11935 |
advcl |
using,displaying |
| R7757 |
T11937 |
T11936 |
dobj |
TreeView,using |
| R7758 |
T11938 |
T11907 |
punct |
.,analyzed |
| R7759 |
T11940 |
T11941 |
det |
This,method |
| R7760 |
T11941 |
T11943 |
nsubj |
method,produced |
| R7761 |
T11942 |
T11941 |
amod |
additional,method |
| R7762 |
T11944 |
T11943 |
dobj |
trees,produced |
| R7763 |
T11945 |
T11944 |
prep |
with,trees |
| R7764 |
T11946 |
T11947 |
advmod |
essentially,topology |
| R7765 |
T11947 |
T11945 |
pobj |
topology,with |
| R7766 |
T11948 |
T11947 |
det |
the,topology |
| R7767 |
T11949 |
T11947 |
amod |
same,topology |
| R7768 |
T11950 |
T11951 |
punct |
(,shown |
| R7769 |
T11951 |
T11943 |
parataxis |
shown,produced |
| R7770 |
T11952 |
T11951 |
nsubj |
data,shown |
| R7771 |
T11953 |
T11951 |
neg |
not,shown |
| R7772 |
T11954 |
T11951 |
punct |
),shown |
| R7773 |
T11955 |
T11943 |
punct |
.,produced |
