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PMC:340383 / 10072-10494 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T6228 10-14 CD denotes Four
T6230 15-28 NN denotes transmembrane
T6229 29-36 NNS denotes domains
T6231 37-43 IN denotes within
T6232 44-49 NN denotes Acdp4
T6233 50-57 NN denotes protein
T6234 57-58 . denotes .
T6235 58-118 sentence denotes Transmembrane domains were predicted by the TMHMM program .
T6236 59-72 NN denotes Transmembrane
T6237 73-80 NNS denotes domains
T6239 81-85 VBD denotes were
T6238 86-95 VBN denotes predicted
T6240 96-98 IN denotes by
T6241 99-102 DT denotes the
T6243 103-108 NN denotes TMHMM
T6242 109-116 NN denotes program
T6244 117-118 . denotes .
T6245 118-190 sentence denotes The plot shows the posterior probabilities of inside /outside/TM helix.
T6246 119-122 DT denotes The
T6247 123-127 NN denotes plot
T6248 128-133 VBZ denotes shows
T6249 134-137 DT denotes the
T6251 138-147 JJ denotes posterior
T6250 148-161 NNS denotes probabilities
T6252 162-164 IN denotes of
T6253 165-171 JJ denotes inside
T6255 172-173 HYPH denotes /
T6256 173-180 JJ denotes outside
T6257 180-181 HYPH denotes /
T6254 181-183 NN denotes TM
T6258 184-189 NN denotes helix
T6259 189-190 . denotes .
T6260 190-265 sentence denotes At the top of the plot (between 1 and 1.2) the N-best prediction is shown.
T6261 191-193 IN denotes At
T6263 194-197 DT denotes the
T6264 198-201 NN denotes top
T6265 202-204 IN denotes of
T6266 205-208 DT denotes the
T6267 209-213 NN denotes plot
T6268 214-215 -LRB- denotes (
T6269 215-222 IN denotes between
T6270 223-224 CD denotes 1
T6271 225-228 CC denotes and
T6272 229-232 CD denotes 1.2
T6273 232-233 -RRB- denotes )
T6274 234-237 DT denotes the
T6276 238-239 NN denotes N
T6278 239-240 HYPH denotes -
T6277 240-244 JJS denotes best
T6275 245-255 NN denotes prediction
T6279 256-258 VBZ denotes is
T6262 259-264 VBN denotes shown
T6280 264-265 . denotes .
T6281 265-422 sentence denotes The plot is obtained by calculating the total probability that a residue sits in helix, inside, or outside summed over all possible paths through the model.
T6282 266-269 DT denotes The
T6283 270-274 NN denotes plot
T6285 275-277 VBZ denotes is
T6284 278-286 VBN denotes obtained
T6286 287-289 IN denotes by
T6287 290-301 VBG denotes calculating
T6288 302-305 DT denotes the
T6290 306-311 JJ denotes total
T6289 312-323 NN denotes probability
T6291 324-328 IN denotes that
T6293 329-330 DT denotes a
T6294 331-338 NN denotes residue
T6292 339-343 VBZ denotes sits
T6295 344-346 IN denotes in
T6296 347-352 NN denotes helix
T6297 352-354 , denotes ,
T6298 354-360 RB denotes inside
T6299 360-362 , denotes ,
T6300 362-364 CC denotes or
T6301 365-372 RB denotes outside
T6302 373-379 VBD denotes summed
T6303 380-384 IN denotes over
T6304 385-388 DT denotes all
T6306 389-397 JJ denotes possible
T6305 398-403 NNS denotes paths
T6307 404-411 IN denotes through
T6308 412-415 DT denotes the
T6309 416-421 NN denotes model
T6310 421-422 . denotes .
R3825 T6228 T6229 nummod Four,domains
R3826 T6230 T6229 compound transmembrane,domains
R3827 T6231 T6229 prep within,domains
R3828 T6232 T6233 compound Acdp4,protein
R3829 T6233 T6231 pobj protein,within
R3830 T6234 T6229 punct .,domains
R3831 T6236 T6237 compound Transmembrane,domains
R3832 T6237 T6238 nsubjpass domains,predicted
R3833 T6239 T6238 auxpass were,predicted
R3834 T6240 T6238 prep by,predicted
R3835 T6241 T6242 det the,program
R3836 T6242 T6240 pobj program,by
R3837 T6243 T6242 compound TMHMM,program
R3838 T6244 T6238 punct .,predicted
R3839 T6246 T6247 det The,plot
R3840 T6247 T6248 nsubj plot,shows
R3841 T6249 T6250 det the,probabilities
R3842 T6250 T6248 dobj probabilities,shows
R3843 T6251 T6250 amod posterior,probabilities
R3844 T6252 T6250 prep of,probabilities
R3845 T6253 T6254 amod inside,TM
R3846 T6254 T6258 compound TM,helix
R3847 T6255 T6254 punct /,TM
R3848 T6256 T6254 amod outside,TM
R3849 T6257 T6254 punct /,TM
R3850 T6258 T6252 pobj helix,of
R3851 T6259 T6248 punct .,shows
R3852 T6261 T6262 prep At,shown
R3853 T6263 T6264 det the,top
R3854 T6264 T6261 pobj top,At
R3855 T6265 T6264 prep of,top
R3856 T6266 T6267 det the,plot
R3857 T6267 T6265 pobj plot,of
R3858 T6268 T6261 punct (,At
R3859 T6269 T6261 prep between,At
R3860 T6270 T6269 pobj 1,between
R3861 T6271 T6270 cc and,1
R3862 T6272 T6270 conj 1.2,1
R3863 T6273 T6262 punct ),shown
R3864 T6274 T6275 det the,prediction
R3865 T6275 T6262 nsubjpass prediction,shown
R3866 T6276 T6277 npadvmod N,best
R3867 T6277 T6275 amod best,prediction
R3868 T6278 T6277 punct -,best
R3869 T6279 T6262 auxpass is,shown
R3870 T6280 T6262 punct .,shown
R3871 T6282 T6283 det The,plot
R3872 T6283 T6284 nsubjpass plot,obtained
R3873 T6285 T6284 auxpass is,obtained
R3874 T6286 T6284 prep by,obtained
R3875 T6287 T6286 pcomp calculating,by
R3876 T6288 T6289 det the,probability
R3877 T6289 T6287 dobj probability,calculating
R3878 T6290 T6289 amod total,probability
R3879 T6291 T6292 mark that,sits
R3880 T6292 T6289 acl sits,probability
R3881 T6293 T6294 det a,residue
R3882 T6294 T6292 nsubj residue,sits
R3883 T6295 T6292 prep in,sits
R3884 T6296 T6295 pobj helix,in
R3885 T6297 T6292 punct ", ",sits
R3886 T6298 T6292 advmod inside,sits
R3887 T6299 T6298 punct ", ",inside
R3888 T6300 T6298 cc or,inside
R3889 T6301 T6298 conj outside,inside
R3890 T6302 T6289 acl summed,probability
R3891 T6303 T6302 prep over,summed
R3892 T6304 T6305 det all,paths
R3893 T6305 T6303 pobj paths,over
R3894 T6306 T6305 amod possible,paths
R3895 T6307 T6305 prep through,paths
R3896 T6308 T6309 det the,model
R3897 T6309 T6307 pobj model,through
R3898 T6310 T6284 punct .,obtained