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PMC:329117 / 23966-25277 JSONTXT 5 Projects

Annnotations TAB TSV DIC JSON TextAE Lectin_function IAV-Glycan

Id Subject Object Predicate Lexical cue
T6755 0-2 PRP denotes We
T6757 3-7 VBD denotes were
T6756 8-17 VBN denotes intrigued
T6758 18-22 CC denotes both
T6759 23-25 IN denotes by
T6760 26-34 JJ denotes previous
T6761 35-42 NNS denotes reports
T6762 43-45 IN denotes of
T6763 46-54 NN denotes splicing
T6764 55-57 IN denotes of
T6765 58-63 JJ denotes human
T6767 64-73 JJ denotes olfactory
T6766 74-83 NNS denotes receptors
T6768 84-88 IN denotes near
T6769 89-92 DT denotes the
T6771 93-98 JJ denotes major
T6772 99-117 NN denotes histocompatibility
T6770 118-125 NN denotes complex
T6774 126-127 -LRB- denotes (
T6775 127-130 NN denotes MHC
T6776 130-131 -RRB- denotes )
T6773 132-139 NN denotes cluster
T6777 139-141 , denotes ,
T6778 141-146 WRB denotes where
T6780 147-154 JJ denotes several
T6781 155-160 NNS denotes genes
T6779 161-167 VBP denotes splice
T6782 168-172 IN denotes over
T6783 173-177 JJ denotes long
T6784 178-187 NNS denotes distances
T6785 188-190 IN denotes to
T6786 191-192 DT denotes a
T6788 193-199 JJ denotes common
T6789 200-208 JJ denotes upstream
T6787 209-213 NN denotes exon
T6790 214-215 -LRB- denotes [
T6792 215-217 CD denotes 26
T6793 217-218 , denotes ,
T6791 218-220 CD denotes 27
T6794 220-221 -RRB- denotes ]
T6795 222-225 CC denotes and
T6796 226-228 IN denotes by
T6797 229-232 DT denotes the
T6798 233-237 NN denotes idea
T6799 238-242 IN denotes that
T6801 243-252 JJ denotes olfactory
T6802 253-261 NN denotes receptor
T6804 262-277 JJ denotes transcriptional
T6803 278-285 NN denotes control
T6805 286-291 MD denotes could
T6806 292-294 VB denotes be
T6800 295-303 VBN denotes achieved
T6807 304-306 IN denotes by
T6808 307-310 NN denotes DNA
T6810 311-324 NN denotes recombination
T6809 325-335 NNS denotes mechanisms
T6811 335-337 , denotes ,
T6812 337-344 RB denotes perhaps
T6813 345-349 IN denotes with
T6814 350-353 DT denotes the
T6815 354-360 NN denotes result
T6816 361-365 IN denotes that
T6818 366-377 NNS denotes transcripts
T6819 378-383 MD denotes would
T6817 384-391 VB denotes contain
T6820 392-396 DT denotes some
T6821 397-405 NN denotes sequence
T6822 406-410 IN denotes from
T6823 411-418 DT denotes another
T6824 419-424 NN denotes locus
T6825 424-425 . denotes .
T6826 425-658 sentence denotes We therefore verified that the entire sequence of each olfactory receptor EST matches the corresponding gene's genomic 'territory' (defined for this purpose as from 1 kb after the preceding gene to 1 kb after the gene's stop codon).
T6827 426-428 PRP denotes We
T6829 429-438 RB denotes therefore
T6828 439-447 VBD denotes verified
T6830 448-452 IN denotes that
T6832 453-456 DT denotes the
T6834 457-463 JJ denotes entire
T6833 464-472 NN denotes sequence
T6835 473-475 IN denotes of
T6836 476-480 DT denotes each
T6838 481-490 JJ denotes olfactory
T6839 491-499 NN denotes receptor
T6837 500-503 NN denotes EST
T6831 504-511 VBZ denotes matches
T6840 512-515 DT denotes the
T6842 516-529 VBG denotes corresponding
T6841 530-534 NN denotes gene
T6844 534-536 POS denotes 's
T6845 537-544 JJ denotes genomic
T6846 545-546 `` denotes '
T6843 546-555 NN denotes territory
T6847 555-556 '' denotes '
T6848 557-558 -LRB- denotes (
T6849 558-565 VBN denotes defined
T6850 566-569 IN denotes for
T6851 570-574 DT denotes this
T6852 575-582 NN denotes purpose
T6853 583-585 IN denotes as
T6854 586-590 IN denotes from
T6855 591-592 CD denotes 1
T6856 593-595 NN denotes kb
T6857 596-601 IN denotes after
T6858 602-605 DT denotes the
T6860 606-615 VBG denotes preceding
T6859 616-620 NN denotes gene
T6861 621-623 IN denotes to
T6862 624-625 CD denotes 1
T6863 626-628 NN denotes kb
T6864 629-634 IN denotes after
T6865 635-638 DT denotes the
T6866 639-643 NN denotes gene
T6868 643-645 POS denotes 's
T6869 646-650 NN denotes stop
T6867 651-656 NN denotes codon
T6870 656-657 -RRB- denotes )
T6871 657-658 . denotes .
T6872 658-803 sentence denotes We found no cDNAs where introns encompassed other olfactory receptor genes, as reported for olfactory receptors in the human MHC region [26,27].
T6873 659-661 PRP denotes We
T6874 662-667 VBD denotes found
T6875 668-670 DT denotes no
T6876 671-676 NNS denotes cDNAs
T6877 677-682 WRB denotes where
T6879 683-690 NNS denotes introns
T6878 691-702 VBD denotes encompassed
T6880 703-708 JJ denotes other
T6882 709-718 JJ denotes olfactory
T6883 719-727 NN denotes receptor
T6881 728-733 NNS denotes genes
T6884 733-735 , denotes ,
T6885 735-737 IN denotes as
T6886 738-746 VBN denotes reported
T6887 747-750 IN denotes for
T6888 751-760 JJ denotes olfactory
T6889 761-770 NNS denotes receptors
T6890 771-773 IN denotes in
T6891 774-777 DT denotes the
T6893 778-783 JJ denotes human
T6894 784-787 NN denotes MHC
T6892 788-794 NN denotes region
T6895 795-796 -LRB- denotes [
T6897 796-798 CD denotes 26
T6898 798-799 , denotes ,
T6896 799-801 CD denotes 27
T6899 801-802 -RRB- denotes ]
T6900 802-803 . denotes .
T6901 803-934 sentence denotes Six cDNAs do extend further than a single gene's 'territory' and appear not to be artifacts of the sequencing or analysis process.
T6902 804-807 CD denotes Six
T6903 808-813 NNS denotes cDNAs
T6905 814-816 VBP denotes do
T6904 817-823 VB denotes extend
T6906 824-831 RBR denotes further
T6907 832-836 IN denotes than
T6908 837-838 DT denotes a
T6910 839-845 JJ denotes single
T6909 846-850 NN denotes gene
T6912 850-852 POS denotes 's
T6913 853-854 `` denotes '
T6911 854-863 NN denotes territory
T6914 863-864 '' denotes '
T6915 865-868 CC denotes and
T6916 869-875 VBP denotes appear
T6917 876-879 RB denotes not
T6919 880-882 TO denotes to
T6918 883-885 VB denotes be
T6920 886-895 NNS denotes artifacts
T6921 896-898 IN denotes of
T6922 899-902 DT denotes the
T6924 903-913 NN denotes sequencing
T6925 914-916 CC denotes or
T6926 917-925 NN denotes analysis
T6923 926-933 NN denotes process
T6927 933-934 . denotes .
T6928 934-1082 sentence denotes In each of these cases, the clones use splice sites within the 3' UTR and thus extend further than the arbitrary 1 kb downstream of the stop codon.
T6929 935-937 IN denotes In
T6931 938-942 DT denotes each
T6932 943-945 IN denotes of
T6933 946-951 DT denotes these
T6934 952-957 NNS denotes cases
T6935 957-959 , denotes ,
T6936 959-962 DT denotes the
T6937 963-969 NNS denotes clones
T6930 970-973 VBP denotes use
T6938 974-980 NN denotes splice
T6939 981-986 NNS denotes sites
T6940 987-993 IN denotes within
T6941 994-997 DT denotes the
T6943 998-999 CD denotes 3
T6944 999-1000 SYM denotes '
T6942 1001-1004 NN denotes UTR
T6945 1005-1008 CC denotes and
T6946 1009-1013 RB denotes thus
T6947 1014-1020 VBP denotes extend
T6948 1021-1028 RBR denotes further
T6950 1029-1033 IN denotes than
T6951 1034-1037 DT denotes the
T6953 1038-1047 JJ denotes arbitrary
T6954 1048-1049 CD denotes 1
T6952 1050-1052 NN denotes kb
T6949 1053-1063 JJ denotes downstream
T6955 1064-1066 IN denotes of
T6956 1067-1070 DT denotes the
T6958 1071-1075 NN denotes stop
T6957 1076-1081 NN denotes codon
T6959 1081-1082 . denotes .
T6960 1082-1212 sentence denotes Five of these six cDNAs also use splice-donor sites within the coding region and encode disrupted olfactory receptors (Figure 6).
T6961 1083-1087 CD denotes Five
T6963 1088-1090 IN denotes of
T6964 1091-1096 DT denotes these
T6966 1097-1100 CD denotes six
T6965 1101-1106 NNS denotes cDNAs
T6967 1107-1111 RB denotes also
T6962 1112-1115 VBP denotes use
T6968 1116-1122 NN denotes splice
T6970 1122-1123 HYPH denotes -
T6969 1123-1128 NN denotes donor
T6971 1129-1134 NNS denotes sites
T6972 1135-1141 IN denotes within
T6973 1142-1145 DT denotes the
T6975 1146-1152 VBG denotes coding
T6974 1153-1159 NN denotes region
T6976 1160-1163 CC denotes and
T6977 1164-1170 VBP denotes encode
T6978 1171-1180 VBN denotes disrupted
T6980 1181-1190 JJ denotes olfactory
T6979 1191-1200 NNS denotes receptors
T6981 1201-1202 -LRB- denotes (
T6982 1202-1208 NN denotes Figure
T6983 1209-1210 CD denotes 6
T6984 1210-1211 -RRB- denotes )
T6985 1211-1212 . denotes .
T6986 1212-1311 sentence denotes In the sixth cDNA, a 2.6-kb intron is spliced out of the 3' UTR, leaving the coding region intact.
T6987 1213-1215 IN denotes In
T6989 1216-1219 DT denotes the
T6991 1220-1225 JJ denotes sixth
T6990 1226-1230 NN denotes cDNA
T6992 1230-1232 , denotes ,
T6993 1232-1233 DT denotes a
T6995 1234-1237 CD denotes 2.6
T6997 1237-1238 HYPH denotes -
T6996 1238-1240 NN denotes kb
T6994 1241-1247 NN denotes intron
T6998 1248-1250 VBZ denotes is
T6988 1251-1258 VBN denotes spliced
T6999 1259-1262 IN denotes out
T7000 1263-1265 IN denotes of
T7001 1266-1269 DT denotes the
T7003 1270-1271 CD denotes 3
T7004 1271-1272 SYM denotes '
T7002 1273-1276 NN denotes UTR
T7005 1276-1278 , denotes ,
T7006 1278-1285 VBG denotes leaving
T7007 1286-1289 DT denotes the
T7009 1290-1296 VBG denotes coding
T7008 1297-1303 NN denotes region
T7010 1304-1310 JJ denotes intact
T7011 1310-1311 . denotes .
R4136 T6755 T6756 nsubjpass We,intrigued
R4137 T6757 T6756 auxpass were,intrigued
R4138 T6758 T6759 preconj both,by
R4139 T6759 T6756 prep by,intrigued
R4140 T6760 T6761 amod previous,reports
R4141 T6761 T6759 pobj reports,by
R4142 T6762 T6761 prep of,reports
R4143 T6763 T6762 pobj splicing,of
R4144 T6764 T6763 prep of,splicing
R4145 T6765 T6766 amod human,receptors
R4146 T6766 T6764 pobj receptors,of
R4147 T6767 T6766 amod olfactory,receptors
R4148 T6768 T6763 prep near,splicing
R4149 T6769 T6770 det the,complex
R4150 T6770 T6773 nmod complex,cluster
R4151 T6771 T6770 amod major,complex
R4152 T6772 T6770 nmod histocompatibility,complex
R4153 T6773 T6768 pobj cluster,near
R4154 T6774 T6770 punct (,complex
R4155 T6775 T6770 appos MHC,complex
R4156 T6776 T6773 punct ),cluster
R4157 T6777 T6773 punct ", ",cluster
R4158 T6778 T6779 advmod where,splice
R4159 T6779 T6773 relcl splice,cluster
R4160 T6780 T6781 amod several,genes
R4161 T6781 T6779 nsubj genes,splice
R4162 T6782 T6779 prep over,splice
R4163 T6783 T6784 amod long,distances
R4164 T6784 T6782 pobj distances,over
R4165 T6785 T6779 prep to,splice
R4166 T6786 T6787 det a,exon
R4167 T6787 T6785 pobj exon,to
R4168 T6788 T6787 amod common,exon
R4169 T6789 T6787 amod upstream,exon
R4170 T6790 T6791 punct [,27
R4171 T6791 T6773 parataxis 27,cluster
R4172 T6792 T6791 nummod 26,27
R4173 T6793 T6791 punct ",",27
R4174 T6794 T6791 punct ],27
R4175 T6795 T6759 cc and,by
R4176 T6796 T6759 conj by,by
R4177 T6797 T6798 det the,idea
R4178 T6798 T6796 pobj idea,by
R4179 T6799 T6800 mark that,achieved
R4180 T6800 T6798 acl achieved,idea
R4181 T6801 T6802 amod olfactory,receptor
R4182 T6802 T6803 nmod receptor,control
R4183 T6803 T6800 nsubjpass control,achieved
R4184 T6804 T6803 amod transcriptional,control
R4185 T6805 T6800 aux could,achieved
R4186 T6806 T6800 auxpass be,achieved
R4187 T6807 T6800 prep by,achieved
R4188 T6808 T6809 compound DNA,mechanisms
R4189 T6809 T6807 pobj mechanisms,by
R4190 T6810 T6809 compound recombination,mechanisms
R4191 T6811 T6800 punct ", ",achieved
R4192 T6812 T6813 advmod perhaps,with
R4193 T6813 T6800 prep with,achieved
R4194 T6814 T6815 det the,result
R4195 T6815 T6813 pobj result,with
R4196 T6816 T6817 mark that,contain
R4197 T6817 T6815 acl contain,result
R4198 T6818 T6817 nsubj transcripts,contain
R4199 T6819 T6817 aux would,contain
R4200 T6820 T6821 det some,sequence
R4201 T6821 T6817 dobj sequence,contain
R4202 T6822 T6821 prep from,sequence
R4203 T6823 T6824 det another,locus
R4204 T6824 T6822 pobj locus,from
R4205 T6825 T6756 punct .,intrigued
R4206 T6827 T6828 nsubj We,verified
R4207 T6829 T6828 advmod therefore,verified
R4208 T6830 T6831 mark that,matches
R4209 T6831 T6828 ccomp matches,verified
R4210 T6832 T6833 det the,sequence
R4211 T6833 T6831 nsubj sequence,matches
R4212 T6834 T6833 amod entire,sequence
R4213 T6835 T6833 prep of,sequence
R4214 T6836 T6837 det each,EST
R4215 T6837 T6835 pobj EST,of
R4216 T6838 T6839 amod olfactory,receptor
R4217 T6839 T6837 compound receptor,EST
R4218 T6840 T6841 det the,gene
R4219 T6841 T6843 poss gene,territory
R4220 T6842 T6841 amod corresponding,gene
R4221 T6843 T6831 dobj territory,matches
R4222 T6844 T6841 case 's,gene
R4223 T6845 T6843 amod genomic,territory
R4224 T6846 T6843 punct ',territory
R4225 T6847 T6843 punct ',territory
R4226 T6848 T6843 punct (,territory
R4227 T6849 T6843 acl defined,territory
R4228 T6850 T6849 prep for,defined
R4229 T6851 T6852 det this,purpose
R4230 T6852 T6850 pobj purpose,for
R4231 T6853 T6849 prep as,defined
R4232 T6854 T6853 prep from,as
R4233 T6855 T6856 nummod 1,kb
R4234 T6856 T6857 npadvmod kb,after
R4235 T6857 T6854 prep after,from
R4236 T6858 T6859 det the,gene
R4237 T6859 T6857 pobj gene,after
R4238 T6860 T6859 amod preceding,gene
R4239 T6861 T6854 prep to,from
R4240 T6862 T6863 nummod 1,kb
R4241 T6863 T6864 npadvmod kb,after
R4242 T6864 T6861 prep after,to
R4243 T6865 T6866 det the,gene
R4244 T6866 T6867 poss gene,codon
R4245 T6867 T6864 pobj codon,after
R4246 T6868 T6866 case 's,gene
R4247 T6869 T6867 compound stop,codon
R4248 T6870 T6828 punct ),verified
R4249 T6871 T6828 punct .,verified
R4250 T6873 T6874 nsubj We,found
R4251 T6875 T6876 det no,cDNAs
R4252 T6876 T6874 dobj cDNAs,found
R4253 T6877 T6878 advmod where,encompassed
R4254 T6878 T6876 relcl encompassed,cDNAs
R4255 T6879 T6878 nsubj introns,encompassed
R4256 T6880 T6881 amod other,genes
R4257 T6881 T6878 dobj genes,encompassed
R4258 T6882 T6883 amod olfactory,receptor
R4259 T6883 T6881 compound receptor,genes
R4260 T6884 T6878 punct ", ",encompassed
R4261 T6885 T6886 mark as,reported
R4262 T6886 T6878 advcl reported,encompassed
R4263 T6887 T6886 prep for,reported
R4264 T6888 T6889 amod olfactory,receptors
R4265 T6889 T6887 pobj receptors,for
R4266 T6890 T6889 prep in,receptors
R4267 T6891 T6892 det the,region
R4268 T6892 T6890 pobj region,in
R4269 T6893 T6894 amod human,MHC
R4270 T6894 T6892 compound MHC,region
R4271 T6895 T6896 punct [,27
R4272 T6896 T6886 parataxis 27,reported
R4273 T6897 T6896 nummod 26,27
R4274 T6898 T6896 punct ",",27
R4275 T6899 T6896 punct ],27
R4276 T6900 T6874 punct .,found
R4277 T6902 T6903 nummod Six,cDNAs
R4278 T6903 T6904 nsubj cDNAs,extend
R4279 T6905 T6904 aux do,extend
R4280 T6906 T6904 advmod further,extend
R4281 T6907 T6906 prep than,further
R4282 T6908 T6909 det a,gene
R4283 T6909 T6911 poss gene,territory
R4284 T6910 T6909 amod single,gene
R4285 T6911 T6907 pobj territory,than
R4286 T6912 T6909 case 's,gene
R4287 T6913 T6911 punct ',territory
R4288 T6914 T6904 punct ',extend
R4289 T6915 T6904 cc and,extend
R4290 T6916 T6904 conj appear,extend
R4291 T6917 T6918 neg not,be
R4292 T6918 T6916 xcomp be,appear
R4293 T6919 T6918 aux to,be
R4294 T6920 T6918 attr artifacts,be
R4295 T6921 T6920 prep of,artifacts
R4296 T6922 T6923 det the,process
R4297 T6923 T6921 pobj process,of
R4298 T6924 T6923 nmod sequencing,process
R4299 T6925 T6924 cc or,sequencing
R4300 T6926 T6924 conj analysis,sequencing
R4301 T6927 T6904 punct .,extend
R4302 T6929 T6930 prep In,use
R4303 T6931 T6929 pobj each,In
R4304 T6932 T6931 prep of,each
R4305 T6933 T6934 det these,cases
R4306 T6934 T6932 pobj cases,of
R4307 T6935 T6930 punct ", ",use
R4308 T6936 T6937 det the,clones
R4309 T6937 T6930 nsubj clones,use
R4310 T6938 T6939 compound splice,sites
R4311 T6939 T6930 dobj sites,use
R4312 T6940 T6930 prep within,use
R4313 T6941 T6942 det the,UTR
R4314 T6942 T6940 pobj UTR,within
R4315 T6943 T6942 nummod 3,UTR
R4316 T6944 T6943 punct ',3
R4317 T6945 T6930 cc and,use
R4318 T6946 T6947 advmod thus,extend
R4319 T6947 T6930 conj extend,use
R4320 T6948 T6949 advmod further,downstream
R4321 T6949 T6947 advmod downstream,extend
R4322 T6950 T6948 prep than,further
R4323 T6951 T6952 det the,kb
R4324 T6952 T6950 pobj kb,than
R4325 T6953 T6952 amod arbitrary,kb
R4326 T6954 T6952 nummod 1,kb
R4327 T6955 T6949 prep of,downstream
R4328 T6956 T6957 det the,codon
R4329 T6957 T6955 pobj codon,of
R4330 T6958 T6957 compound stop,codon
R4331 T6959 T6930 punct .,use
R4332 T6961 T6962 nsubj Five,use
R4333 T6963 T6961 prep of,Five
R4334 T6964 T6965 det these,cDNAs
R4335 T6965 T6963 pobj cDNAs,of
R4336 T6966 T6965 nummod six,cDNAs
R4337 T6967 T6962 advmod also,use
R4338 T6968 T6969 compound splice,donor
R4339 T6969 T6971 compound donor,sites
R4340 T6970 T6969 punct -,donor
R4341 T6971 T6962 dobj sites,use
R4342 T6972 T6962 prep within,use
R4343 T6973 T6974 det the,region
R4344 T6974 T6972 pobj region,within
R4345 T6975 T6974 amod coding,region
R4346 T6976 T6962 cc and,use
R4347 T6977 T6962 conj encode,use
R4348 T6978 T6979 amod disrupted,receptors
R4349 T6979 T6977 dobj receptors,encode
R4350 T6980 T6979 amod olfactory,receptors
R4351 T6981 T6982 punct (,Figure
R4352 T6982 T6977 parataxis Figure,encode
R4353 T6983 T6982 nummod 6,Figure
R4354 T6984 T6982 punct ),Figure
R4355 T6985 T6962 punct .,use
R4356 T6987 T6988 prep In,spliced
R4357 T6989 T6990 det the,cDNA
R4358 T6990 T6987 pobj cDNA,In
R4359 T6991 T6990 amod sixth,cDNA
R4360 T6992 T6988 punct ", ",spliced
R4361 T6993 T6994 det a,intron
R4362 T6994 T6988 nsubjpass intron,spliced
R4363 T6995 T6996 nummod 2.6,kb
R4364 T6996 T6994 compound kb,intron
R4365 T6997 T6996 punct -,kb
R4366 T6998 T6988 auxpass is,spliced
R4367 T6999 T6988 prep out,spliced
R4368 T7000 T6999 prep of,out
R4369 T7001 T7002 det the,UTR
R4370 T7002 T7000 pobj UTR,of
R4371 T7003 T7002 nummod 3,UTR
R4372 T7004 T7003 punct ',3
R4373 T7005 T6988 punct ", ",spliced
R4374 T7006 T6988 advcl leaving,spliced
R4375 T7007 T7008 det the,region
R4376 T7008 T7006 dobj region,leaving
R4377 T7009 T7008 amod coding,region
R4378 T7010 T7006 oprd intact,leaving
R4379 T7011 T6988 punct .,spliced