craft-sa-dev Home  

PMC:314463 / 22067-23313 JSONTXT 5 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T4775 0-5 VBG denotes Using
T4777 6-14 NN denotes sequence
T4778 15-26 NN denotes information
T4779 27-31 IN denotes from
T4780 32-39 NNP denotes Agulnik
T4781 40-42 FW denotes et
T4782 43-46 FW denotes al.
T4783 47-48 -LRB- denotes (
T4784 48-52 CD denotes 1998
T4785 52-53 -RRB- denotes )
T4786 54-57 CC denotes and
T4787 58-61 DT denotes the
T4789 62-71 RB denotes partially
T4790 72-81 VBN denotes completed
T4791 82-87 NN denotes mouse
T4792 88-94 NN denotes genome
T4788 95-103 NN denotes sequence
T4793 103-105 , denotes ,
T4794 105-107 PRP denotes we
T4776 108-113 VBD denotes found
T4795 114-118 IN denotes that
T4797 119-127 NNS denotes portions
T4798 128-130 IN denotes of
T4799 131-138 JJ denotes several
T4801 139-144 NN denotes Tbx15
T4800 145-150 NNS denotes exons
T4802 151-156 MD denotes could
T4803 157-160 RB denotes not
T4804 161-163 VB denotes be
T4796 164-173 VBN denotes amplified
T4805 174-178 IN denotes from
T4806 179-182 NN denotes deH
T4808 182-183 HYPH denotes /
T4807 183-186 NN denotes deH
T4810 187-194 JJ denotes genomic
T4809 195-198 NN denotes DNA
T4811 198-199 . denotes .
T4812 199-412 sentence denotes The same gene was initially referred to as Tbx8 (Wattler et al. 1998) and then later renamed Tbx14, but is currently referred to in several vertebrate genomes as Tbx15 (Agulnik et al. 1998; Begemann et al. 2002).
T4813 200-203 DT denotes The
T4815 204-208 JJ denotes same
T4814 209-213 NN denotes gene
T4817 214-217 VBD denotes was
T4818 218-227 RB denotes initially
T4816 228-236 VBN denotes referred
T4819 237-239 IN denotes to
T4820 240-242 IN denotes as
T4821 243-247 NN denotes Tbx8
T4822 248-249 -LRB- denotes (
T4823 249-256 NNP denotes Wattler
T4824 257-259 FW denotes et
T4825 260-263 FW denotes al.
T4826 264-268 CD denotes 1998
T4827 268-269 -RRB- denotes )
T4828 270-273 CC denotes and
T4829 274-278 RB denotes then
T4831 279-284 RB denotes later
T4830 285-292 VBN denotes renamed
T4832 293-298 NN denotes Tbx14
T4833 298-300 , denotes ,
T4834 300-303 CC denotes but
T4835 304-306 VBZ denotes is
T4837 307-316 RB denotes currently
T4836 317-325 VBN denotes referred
T4838 326-328 IN denotes to
T4839 329-331 IN denotes in
T4840 332-339 JJ denotes several
T4842 340-350 NN denotes vertebrate
T4841 351-358 NNS denotes genomes
T4843 359-361 IN denotes as
T4844 362-367 NN denotes Tbx15
T4845 368-369 -LRB- denotes (
T4846 369-376 NNP denotes Agulnik
T4847 377-379 FW denotes et
T4848 380-383 FW denotes al.
T4849 384-388 CD denotes 1998
T4850 388-389 : denotes ;
T4851 390-398 NNP denotes Begemann
T4852 399-401 FW denotes et
T4853 402-405 FW denotes al.
T4854 406-410 CD denotes 2002
T4855 410-411 -RRB- denotes )
T4856 411-412 . denotes .
T4857 412-762 sentence denotes By comparing the sequence of a 1.3 kb junction fragment amplified from deH/deH genomic DNA to publicly available mouse genome sequence, we identified a 216 kb deletion that extends from Tbx15 intron 1 to 148 kb downstream of the polyadenylation sequence in a region annotated as a mannose-6-phosphate receptor pseudogene, M6pr-ps (Figure 3B and 3C).
T4858 413-415 IN denotes By
T4860 416-425 VBG denotes comparing
T4861 426-429 DT denotes the
T4862 430-438 NN denotes sequence
T4863 439-441 IN denotes of
T4864 442-443 DT denotes a
T4866 444-447 CD denotes 1.3
T4867 448-450 NN denotes kb
T4868 451-459 NN denotes junction
T4865 460-468 NN denotes fragment
T4869 469-478 VBN denotes amplified
T4870 479-483 IN denotes from
T4871 484-487 NN denotes deH
T4873 487-488 HYPH denotes /
T4872 488-491 NN denotes deH
T4875 492-499 JJ denotes genomic
T4874 500-503 NN denotes DNA
T4876 504-506 IN denotes to
T4877 507-515 RB denotes publicly
T4878 516-525 JJ denotes available
T4880 526-531 NN denotes mouse
T4881 532-538 NN denotes genome
T4879 539-547 NN denotes sequence
T4882 547-549 , denotes ,
T4883 549-551 PRP denotes we
T4859 552-562 VBD denotes identified
T4884 563-564 DT denotes a
T4886 565-568 CD denotes 216
T4887 569-571 NN denotes kb
T4885 572-580 NN denotes deletion
T4888 581-585 WDT denotes that
T4889 586-593 VBZ denotes extends
T4890 594-598 IN denotes from
T4891 599-604 NN denotes Tbx15
T4892 605-611 NN denotes intron
T4893 612-613 CD denotes 1
T4894 614-616 IN denotes to
T4895 617-620 CD denotes 148
T4896 621-623 NN denotes kb
T4897 624-634 RB denotes downstream
T4898 635-637 IN denotes of
T4899 638-641 DT denotes the
T4901 642-657 NN denotes polyadenylation
T4900 658-666 NN denotes sequence
T4902 667-669 IN denotes in
T4903 670-671 DT denotes a
T4904 672-678 NN denotes region
T4905 679-688 VBN denotes annotated
T4906 689-691 IN denotes as
T4907 692-693 DT denotes a
T4909 694-701 NN denotes mannose
T4911 701-702 HYPH denotes -
T4912 702-703 CD denotes 6
T4913 703-704 HYPH denotes -
T4910 704-713 NN denotes phosphate
T4914 714-722 NN denotes receptor
T4908 723-733 NN denotes pseudogene
T4915 733-735 , denotes ,
T4916 735-739 NN denotes M6pr
T4918 739-740 HYPH denotes -
T4917 740-742 NN denotes ps
T4919 743-744 -LRB- denotes (
T4921 744-750 NN denotes Figure
T4920 751-753 CD denotes 3B
T4922 754-757 CC denotes and
T4923 758-760 CD denotes 3C
T4924 760-761 -RRB- denotes )
T4925 761-762 . denotes .
T4926 762-784 sentence denotes (Ludwig et al. 1992).
T4927 763-764 -LRB- denotes (
T4928 764-770 NNP denotes Ludwig
T4929 771-773 FW denotes et
T4930 774-777 FW denotes al.
T4931 778-782 CD denotes 1992
T4932 782-783 -RRB- denotes )
T4933 783-784 . denotes .
T4934 784-896 sentence denotes By Northern blot analysis, we identified a fusion transcript produced from the deH chromosome (data not shown).
T4935 785-787 IN denotes By
T4937 788-796 NNP denotes Northern
T4938 797-801 NN denotes blot
T4939 802-810 NN denotes analysis
T4940 810-812 , denotes ,
T4941 812-814 PRP denotes we
T4936 815-825 VBD denotes identified
T4942 826-827 DT denotes a
T4944 828-834 NN denotes fusion
T4943 835-845 NN denotes transcript
T4945 846-854 VBN denotes produced
T4946 855-859 IN denotes from
T4947 860-863 DT denotes the
T4949 864-867 NN denotes deH
T4948 868-878 NN denotes chromosome
T4950 879-880 -LRB- denotes (
T4952 880-884 NNS denotes data
T4953 885-888 RB denotes not
T4951 889-894 VBN denotes shown
T4954 894-895 -RRB- denotes )
T4955 895-896 . denotes .
T4956 896-1139 sentence denotes However, the deletion removes 534 of the 602 amino acids encoded by Tbx15 (including the T-box DNA-binding domain), deH/+ animals are grossly normal, and the phenotype of deH/deH animals is identical to that described for the original allele.
T4957 897-904 RB denotes However
T4959 904-906 , denotes ,
T4960 906-909 DT denotes the
T4961 910-918 NN denotes deletion
T4958 919-926 VBZ denotes removes
T4962 927-930 CD denotes 534
T4964 931-933 IN denotes of
T4965 934-937 DT denotes the
T4963 938-941 CD denotes 602
T4967 942-947 NN denotes amino
T4966 948-953 NNS denotes acids
T4968 954-961 VBN denotes encoded
T4969 962-964 IN denotes by
T4970 965-970 NN denotes Tbx15
T4971 971-972 -LRB- denotes (
T4972 972-981 VBG denotes including
T4973 982-985 DT denotes the
T4975 986-987 NN denotes T
T4977 987-988 HYPH denotes -
T4976 988-991 NN denotes box
T4978 992-995 NN denotes DNA
T4980 995-996 HYPH denotes -
T4979 996-1003 VBG denotes binding
T4974 1004-1010 NN denotes domain
T4981 1010-1011 -RRB- denotes )
T4982 1011-1013 , denotes ,
T4983 1013-1016 NN denotes deH
T4985 1016-1017 HYPH denotes /
T4986 1017-1018 SYM denotes +
T4984 1019-1026 NNS denotes animals
T4987 1027-1030 VBP denotes are
T4988 1031-1038 RB denotes grossly
T4989 1039-1045 JJ denotes normal
T4990 1045-1047 , denotes ,
T4991 1047-1050 CC denotes and
T4992 1051-1054 DT denotes the
T4993 1055-1064 NN denotes phenotype
T4995 1065-1067 IN denotes of
T4996 1068-1071 NN denotes deH
T4998 1071-1072 HYPH denotes /
T4997 1072-1075 NN denotes deH
T4999 1076-1083 NNS denotes animals
T4994 1084-1086 VBZ denotes is
T5000 1087-1096 JJ denotes identical
T5001 1097-1099 IN denotes to
T5002 1100-1104 DT denotes that
T5003 1105-1114 VBN denotes described
T5004 1115-1118 IN denotes for
T5005 1119-1122 DT denotes the
T5007 1123-1131 JJ denotes original
T5006 1132-1138 NN denotes allele
T5008 1138-1139 . denotes .
T5009 1139-1246 sentence denotes In addition, other than M6pr-ps, no other genes or transcripts have been annotated to the 216 kb deletion.
T5010 1140-1142 IN denotes In
T5012 1143-1151 NN denotes addition
T5013 1151-1153 , denotes ,
T5014 1153-1158 JJ denotes other
T5015 1159-1163 IN denotes than
T5016 1164-1168 NN denotes M6pr
T5018 1168-1169 HYPH denotes -
T5017 1169-1171 NN denotes ps
T5019 1171-1173 , denotes ,
T5020 1173-1175 DT denotes no
T5022 1176-1181 JJ denotes other
T5021 1182-1187 NNS denotes genes
T5023 1188-1190 CC denotes or
T5024 1191-1202 NNS denotes transcripts
T5025 1203-1207 VBP denotes have
T5026 1208-1212 VBN denotes been
T5011 1213-1222 VBN denotes annotated
T5027 1223-1225 IN denotes to
T5028 1226-1229 DT denotes the
T5030 1230-1233 CD denotes 216
T5031 1234-1236 NN denotes kb
T5029 1237-1245 NN denotes deletion
T5032 1245-1246 . denotes .
R3242 T4775 T4776 advcl Using,found
R3243 T4777 T4778 compound sequence,information
R3244 T4778 T4775 dobj information,Using
R3245 T4779 T4778 prep from,information
R3246 T4780 T4779 pobj Agulnik,from
R3247 T4781 T4782 advmod et,al.
R3248 T4782 T4780 advmod al.,Agulnik
R3249 T4783 T4780 punct (,Agulnik
R3250 T4784 T4780 npadvmod 1998,Agulnik
R3251 T4785 T4780 punct ),Agulnik
R3252 T4786 T4778 cc and,information
R3253 T4787 T4788 det the,sequence
R3254 T4788 T4778 conj sequence,information
R3255 T4789 T4790 advmod partially,completed
R3256 T4790 T4788 amod completed,sequence
R3257 T4791 T4792 compound mouse,genome
R3258 T4792 T4788 compound genome,sequence
R3259 T4793 T4776 punct ", ",found
R3260 T4794 T4776 nsubj we,found
R3261 T4795 T4796 mark that,amplified
R3262 T4796 T4776 ccomp amplified,found
R3263 T4797 T4796 nsubjpass portions,amplified
R3264 T4798 T4797 prep of,portions
R3265 T4799 T4800 amod several,exons
R3266 T4800 T4798 pobj exons,of
R3267 T4801 T4800 compound Tbx15,exons
R3268 T4802 T4796 aux could,amplified
R3269 T4803 T4796 neg not,amplified
R3270 T4804 T4796 auxpass be,amplified
R3271 T4805 T4796 prep from,amplified
R3272 T4806 T4807 nmod deH,deH
R3273 T4807 T4809 nmod deH,DNA
R3274 T4808 T4807 punct /,deH
R3275 T4809 T4805 pobj DNA,from
R3276 T4810 T4809 amod genomic,DNA
R3277 T4811 T4776 punct .,found
R3278 T4813 T4814 det The,gene
R3279 T4814 T4816 nsubjpass gene,referred
R3280 T4815 T4814 amod same,gene
R3281 T4817 T4816 auxpass was,referred
R3282 T4818 T4816 advmod initially,referred
R3283 T4819 T4816 prep to,referred
R3284 T4820 T4816 prep as,referred
R3285 T4821 T4820 pobj Tbx8,as
R3286 T4822 T4823 punct (,Wattler
R3287 T4823 T4816 meta Wattler,referred
R3288 T4824 T4823 nmod et,Wattler
R3289 T4825 T4823 nmod al.,Wattler
R3290 T4826 T4823 nummod 1998,Wattler
R3291 T4827 T4823 punct ),Wattler
R3292 T4828 T4816 cc and,referred
R3293 T4829 T4830 advmod then,renamed
R3294 T4830 T4816 conj renamed,referred
R3295 T4831 T4830 advmod later,renamed
R3296 T4832 T4830 oprd Tbx14,renamed
R3297 T4833 T4830 punct ", ",renamed
R3298 T4834 T4830 cc but,renamed
R3299 T4835 T4836 auxpass is,referred
R3300 T4836 T4830 conj referred,renamed
R3301 T4837 T4836 advmod currently,referred
R3302 T4838 T4836 prep to,referred
R3303 T4839 T4836 prep in,referred
R3304 T4840 T4841 amod several,genomes
R3305 T4841 T4839 pobj genomes,in
R3306 T4842 T4841 compound vertebrate,genomes
R3307 T4843 T4836 prep as,referred
R3308 T4844 T4843 pobj Tbx15,as
R3309 T4845 T4846 punct (,Agulnik
R3310 T4846 T4836 meta Agulnik,referred
R3311 T4847 T4846 nmod et,Agulnik
R3312 T4848 T4846 nmod al.,Agulnik
R3313 T4849 T4846 nummod 1998,Agulnik
R3314 T4850 T4846 punct ;,Agulnik
R3315 T4851 T4846 nmod Begemann,Agulnik
R3316 T4852 T4846 nmod et,Agulnik
R3317 T4853 T4846 nmod al.,Agulnik
R3318 T4854 T4846 nummod 2002,Agulnik
R3319 T4855 T4846 punct ),Agulnik
R3320 T4856 T4816 punct .,referred
R3321 T4858 T4859 prep By,identified
R3322 T4860 T4858 pcomp comparing,By
R3323 T4861 T4862 det the,sequence
R3324 T4862 T4860 dobj sequence,comparing
R3325 T4863 T4862 prep of,sequence
R3326 T4864 T4865 det a,fragment
R3327 T4865 T4863 pobj fragment,of
R3328 T4866 T4867 nummod 1.3,kb
R3329 T4867 T4868 compound kb,junction
R3330 T4868 T4865 compound junction,fragment
R3331 T4869 T4865 acl amplified,fragment
R3332 T4870 T4869 prep from,amplified
R3333 T4871 T4872 nmod deH,deH
R3334 T4872 T4874 nmod deH,DNA
R3335 T4873 T4872 punct /,deH
R3336 T4874 T4870 pobj DNA,from
R3337 T4875 T4874 amod genomic,DNA
R3338 T4876 T4860 prep to,comparing
R3339 T4877 T4878 advmod publicly,available
R3340 T4878 T4879 amod available,sequence
R3341 T4879 T4876 pobj sequence,to
R3342 T4880 T4881 compound mouse,genome
R3343 T4881 T4879 compound genome,sequence
R3344 T4882 T4859 punct ", ",identified
R3345 T4883 T4859 nsubj we,identified
R3346 T4884 T4885 det a,deletion
R3347 T4885 T4859 dobj deletion,identified
R3348 T4886 T4887 nummod 216,kb
R3349 T4887 T4885 compound kb,deletion
R3350 T4888 T4889 dep that,extends
R3351 T4889 T4885 relcl extends,deletion
R3352 T4890 T4889 prep from,extends
R3353 T4891 T4892 compound Tbx15,intron
R3354 T4892 T4890 pobj intron,from
R3355 T4893 T4892 nummod 1,intron
R3356 T4894 T4889 prep to,extends
R3357 T4895 T4896 nummod 148,kb
R3358 T4896 T4897 npadvmod kb,downstream
R3359 T4897 T4894 pcomp downstream,to
R3360 T4898 T4897 prep of,downstream
R3361 T4899 T4900 det the,sequence
R3362 T4900 T4898 pobj sequence,of
R3363 T4901 T4900 compound polyadenylation,sequence
R3364 T4902 T4900 prep in,sequence
R3365 T4903 T4904 det a,region
R3366 T4904 T4902 pobj region,in
R3367 T4905 T4904 acl annotated,region
R3368 T4906 T4905 prep as,annotated
R3369 T4907 T4908 det a,pseudogene
R3370 T4908 T4906 pobj pseudogene,as
R3371 T4909 T4910 nmod mannose,phosphate
R3372 T4910 T4914 compound phosphate,receptor
R3373 T4911 T4910 punct -,phosphate
R3374 T4912 T4910 nummod 6,phosphate
R3375 T4913 T4910 punct -,phosphate
R3376 T4914 T4908 compound receptor,pseudogene
R3377 T4915 T4908 punct ", ",pseudogene
R3378 T4916 T4917 compound M6pr,ps
R3379 T4917 T4908 appos ps,pseudogene
R3380 T4918 T4917 punct -,ps
R3381 T4919 T4920 punct (,3B
R3382 T4920 T4859 parataxis 3B,identified
R3383 T4921 T4920 nmod Figure,3B
R3384 T4922 T4920 cc and,3B
R3385 T4923 T4920 conj 3C,3B
R3386 T4924 T4920 punct ),3B
R3387 T4925 T4859 punct .,identified
R3388 T4927 T4928 punct (,Ludwig
R3389 T4929 T4928 nmod et,Ludwig
R3390 T4930 T4928 nmod al.,Ludwig
R3391 T4931 T4928 nummod 1992,Ludwig
R3392 T4932 T4928 punct ),Ludwig
R3393 T4933 T4928 punct .,Ludwig
R3394 T4935 T4936 prep By,identified
R3395 T4937 T4938 compound Northern,blot
R3396 T4938 T4939 compound blot,analysis
R3397 T4939 T4935 pobj analysis,By
R3398 T4940 T4936 punct ", ",identified
R3399 T4941 T4936 nsubj we,identified
R3400 T4942 T4943 det a,transcript
R3401 T4943 T4936 dobj transcript,identified
R3402 T4944 T4943 compound fusion,transcript
R3403 T4945 T4943 acl produced,transcript
R3404 T4946 T4945 prep from,produced
R3405 T4947 T4948 det the,chromosome
R3406 T4948 T4946 pobj chromosome,from
R3407 T4949 T4948 compound deH,chromosome
R3408 T4950 T4951 punct (,shown
R3409 T4951 T4936 parataxis shown,identified
R3410 T4952 T4951 nsubj data,shown
R3411 T4953 T4951 neg not,shown
R3412 T4954 T4951 punct ),shown
R3413 T4955 T4936 punct .,identified
R3414 T4957 T4958 advmod However,removes
R3415 T4959 T4958 punct ", ",removes
R3416 T4960 T4961 det the,deletion
R3417 T4961 T4958 nsubj deletion,removes
R3418 T4962 T4963 quantmod 534,602
R3419 T4963 T4966 nummod 602,acids
R3420 T4964 T4963 quantmod of,602
R3421 T4965 T4963 quantmod the,602
R3422 T4966 T4958 dobj acids,removes
R3423 T4967 T4966 compound amino,acids
R3424 T4968 T4966 acl encoded,acids
R3425 T4969 T4968 agent by,encoded
R3426 T4970 T4969 pobj Tbx15,by
R3427 T4971 T4966 punct (,acids
R3428 T4972 T4966 prep including,acids
R3429 T4973 T4974 det the,domain
R3430 T4974 T4972 pobj domain,including
R3431 T4975 T4976 nmod T,box
R3432 T4976 T4974 nmod box,domain
R3433 T4977 T4976 punct -,box
R3434 T4978 T4979 npadvmod DNA,binding
R3435 T4979 T4974 amod binding,domain
R3436 T4980 T4979 punct -,binding
R3437 T4981 T4958 punct ),removes
R3438 T4982 T4958 punct ", ",removes
R3439 T4983 T4984 nmod deH,animals
R3440 T4984 T4987 nsubj animals,are
R3441 T4985 T4983 punct /,deH
R3442 T4986 T4983 punct +,deH
R3443 T4987 T4958 conj are,removes
R3444 T4988 T4989 advmod grossly,normal
R3445 T4989 T4987 acomp normal,are
R3446 T4990 T4987 punct ", ",are
R3447 T4991 T4987 cc and,are
R3448 T4992 T4993 det the,phenotype
R3449 T4993 T4994 nsubj phenotype,is
R3450 T4994 T4987 conj is,are
R3451 T4995 T4993 prep of,phenotype
R3452 T4996 T4997 compound deH,deH
R3453 T4997 T4999 compound deH,animals
R3454 T4998 T4997 punct /,deH
R3455 T4999 T4995 pobj animals,of
R3456 T5000 T4994 acomp identical,is
R3457 T5001 T5000 prep to,identical
R3458 T5002 T5001 pobj that,to
R3459 T5003 T5002 acl described,that
R3460 T5004 T5003 prep for,described
R3461 T5005 T5006 det the,allele
R3462 T5006 T5004 pobj allele,for
R3463 T5007 T5006 amod original,allele
R3464 T5008 T4994 punct .,is
R3465 T5010 T5011 prep In,annotated
R3466 T5012 T5010 pobj addition,In
R3467 T5013 T5011 punct ", ",annotated
R3468 T5014 T5011 amod other,annotated
R3469 T5015 T5014 prep than,other
R3470 T5016 T5017 compound M6pr,ps
R3471 T5017 T5015 pobj ps,than
R3472 T5018 T5017 punct -,ps
R3473 T5019 T5011 punct ", ",annotated
R3474 T5020 T5021 det no,genes
R3475 T5021 T5011 nsubjpass genes,annotated
R3476 T5022 T5021 amod other,genes
R3477 T5023 T5021 cc or,genes
R3478 T5024 T5021 conj transcripts,genes
R3479 T5025 T5011 aux have,annotated
R3480 T5026 T5011 auxpass been,annotated
R3481 T5027 T5011 prep to,annotated
R3482 T5028 T5029 det the,deletion
R3483 T5029 T5027 pobj deletion,to
R3484 T5030 T5031 nummod 216,kb
R3485 T5031 T5029 compound kb,deletion
R3486 T5032 T5011 punct .,annotated