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PMC:1892049 / 9642-10755 JSONTXT 5 Projects

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Id Subject Object Predicate Lexical cue
T15069 10-17 NNS denotes Metrics
T15070 18-25 VBN denotes Derived
T15071 26-30 IN denotes from
T15072 31-39 NN denotes Analysis
T15073 40-42 IN denotes of
T15074 43-46 NN denotes DNA
T15075 47-51 IN denotes from
T15076 52-60 VBN denotes Affected
T15078 61-67 NN denotes Family
T15077 68-74 NN denotes Member
T15079 75-76 CD denotes 7
T15080 77-82 VBG denotes Using
T15081 83-91 NNP denotes Illumina
T15083 92-100 NNP denotes Infinium
T15082 101-112 NNP denotes HumanHap550
T15085 113-123 NN denotes Genotyping
T15084 124-129 NNS denotes Chips
T15086 129-261 sentence denotes The upper and lower plots are log R ratio and B allele frequency, respectively, at an ~800-kb segment on the p arm of Chromosome 3.
T15087 130-133 DT denotes The
T15089 134-139 JJ denotes upper
T15090 140-143 CC denotes and
T15091 144-149 JJ denotes lower
T15088 150-155 NNS denotes plots
T15092 156-159 VBP denotes are
T15093 160-163 NN denotes log
T15094 164-165 NN denotes R
T15095 166-171 NN denotes ratio
T15096 172-175 CC denotes and
T15097 176-177 NN denotes B
T15098 178-184 NN denotes allele
T15099 185-194 NN denotes frequency
T15100 194-196 , denotes ,
T15101 196-208 RB denotes respectively
T15102 208-210 , denotes ,
T15103 210-212 IN denotes at
T15104 213-215 DT denotes an
T15106 216-217 SYM denotes ~
T15107 217-220 CD denotes 800
T15109 220-221 HYPH denotes -
T15108 221-223 NN denotes kb
T15105 224-231 NN denotes segment
T15110 232-234 IN denotes on
T15111 235-238 DT denotes the
T15113 239-240 NN denotes p
T15112 241-244 NN denotes arm
T15114 245-247 IN denotes of
T15115 248-258 NN denotes Chromosome
T15116 259-260 CD denotes 3
T15117 260-261 . denotes .
T15118 261-425 sentence denotes Log R ratio is the ratio of normalized, observed R to expected R for each SNP (each SNP is a blue dot) and thus serves as a surrogate of copy number at each locus.
T15119 262-265 NN denotes Log
T15120 266-267 NN denotes R
T15121 268-273 NN denotes ratio
T15122 274-276 VBZ denotes is
T15123 277-280 DT denotes the
T15124 281-286 NN denotes ratio
T15125 287-289 IN denotes of
T15126 290-300 VBN denotes normalized
T15128 300-302 , denotes ,
T15129 302-310 VBN denotes observed
T15127 311-312 NN denotes R
T15130 313-315 IN denotes to
T15131 316-324 VBN denotes expected
T15132 325-326 NN denotes R
T15133 327-330 IN denotes for
T15134 331-335 DT denotes each
T15135 336-339 NN denotes SNP
T15136 340-341 -LRB- denotes (
T15138 341-345 DT denotes each
T15139 346-349 NN denotes SNP
T15137 350-352 VBZ denotes is
T15140 353-354 DT denotes a
T15142 355-359 JJ denotes blue
T15141 360-363 NN denotes dot
T15143 363-364 -RRB- denotes )
T15144 365-368 CC denotes and
T15145 369-373 RB denotes thus
T15146 374-380 VBZ denotes serves
T15147 381-383 IN denotes as
T15148 384-385 DT denotes a
T15149 386-395 NN denotes surrogate
T15150 396-398 IN denotes of
T15151 399-403 NN denotes copy
T15152 404-410 NN denotes number
T15153 411-413 IN denotes at
T15154 414-418 DT denotes each
T15155 419-424 NN denotes locus
T15156 424-425 . denotes .
T15157 425-563 sentence denotes B allele frequency is a measure of the number of times the A or B alleles are detected at each locus (each SNP is denoted by a blue dot).
T15158 426-427 NN denotes B
T15159 428-434 NN denotes allele
T15160 435-444 NN denotes frequency
T15161 445-447 VBZ denotes is
T15162 448-449 DT denotes a
T15163 450-457 NN denotes measure
T15164 458-460 IN denotes of
T15165 461-464 DT denotes the
T15166 465-471 NN denotes number
T15167 472-474 IN denotes of
T15168 475-480 NNS denotes times
T15169 481-484 DT denotes the
T15171 485-486 NN denotes A
T15172 487-489 CC denotes or
T15173 490-491 NN denotes B
T15170 492-499 NNS denotes alleles
T15175 500-503 VBP denotes are
T15174 504-512 VBN denotes detected
T15176 513-515 IN denotes at
T15177 516-520 DT denotes each
T15178 521-526 NN denotes locus
T15179 527-528 -LRB- denotes (
T15181 528-532 DT denotes each
T15182 533-536 NN denotes SNP
T15183 537-539 VBZ denotes is
T15180 540-547 VBN denotes denoted
T15184 548-550 IN denotes by
T15185 551-552 DT denotes a
T15187 553-557 JJ denotes blue
T15186 558-561 NN denotes dot
T15188 561-562 -RRB- denotes )
T15189 562-563 . denotes .
T15190 563-781 sentence denotes Thus, SNPs with a B allele frequency of one are apparent B/B homozygotes, SNPs with a B allele frequency of 0.5 are apparent A/B heterozygotes, and those with a B allele frequency of zero are apparent A/A homozygotes.
T15191 564-568 RB denotes Thus
T15193 568-570 , denotes ,
T15194 570-574 NNS denotes SNPs
T15196 575-579 IN denotes with
T15197 580-581 DT denotes a
T15199 582-583 NN denotes B
T15200 584-590 NN denotes allele
T15198 591-600 NN denotes frequency
T15201 601-603 IN denotes of
T15202 604-607 CD denotes one
T15195 608-611 VBP denotes are
T15203 612-620 JJ denotes apparent
T15205 621-622 NN denotes B
T15207 622-623 HYPH denotes /
T15206 623-624 NN denotes B
T15204 625-636 NNS denotes homozygotes
T15208 636-638 , denotes ,
T15209 638-642 NNS denotes SNPs
T15210 643-647 IN denotes with
T15211 648-649 DT denotes a
T15213 650-651 NN denotes B
T15214 652-658 NN denotes allele
T15212 659-668 NN denotes frequency
T15215 669-671 IN denotes of
T15216 672-675 CD denotes 0.5
T15192 676-679 VBP denotes are
T15217 680-688 JJ denotes apparent
T15219 689-690 NN denotes A
T15221 690-691 HYPH denotes /
T15220 691-692 NN denotes B
T15218 693-706 NNS denotes heterozygotes
T15222 706-708 , denotes ,
T15223 708-711 CC denotes and
T15224 712-717 DT denotes those
T15226 718-722 IN denotes with
T15227 723-724 DT denotes a
T15229 725-726 NN denotes B
T15230 727-733 NN denotes allele
T15228 734-743 NN denotes frequency
T15231 744-746 IN denotes of
T15232 747-751 CD denotes zero
T15225 752-755 VBP denotes are
T15233 756-764 JJ denotes apparent
T15235 765-766 NN denotes A
T15237 766-767 HYPH denotes /
T15236 767-768 NN denotes A
T15234 769-780 NNS denotes homozygotes
T15238 780-781 . denotes .
T15239 781-917 sentence denotes Clearly, these plots show a contiguous region ~200 kb long with decreased copy number and apparent homozygosity (bounded by a red box).
T15240 782-789 RB denotes Clearly
T15242 789-791 , denotes ,
T15243 791-796 DT denotes these
T15244 797-802 NNS denotes plots
T15241 803-807 VBP denotes show
T15245 808-809 DT denotes a
T15247 810-820 JJ denotes contiguous
T15246 821-827 NN denotes region
T15248 828-829 SYM denotes ~
T15249 829-832 CD denotes 200
T15250 833-835 NN denotes kb
T15251 836-840 JJ denotes long
T15252 841-845 IN denotes with
T15253 846-855 VBN denotes decreased
T15255 856-860 NN denotes copy
T15254 861-867 NN denotes number
T15256 868-871 CC denotes and
T15257 872-880 JJ denotes apparent
T15258 881-893 NN denotes homozygosity
T15259 894-895 -LRB- denotes (
T15260 895-902 VBN denotes bounded
T15261 903-905 IN denotes by
T15262 906-907 DT denotes a
T15264 908-911 JJ denotes red
T15263 912-915 NN denotes box
T15265 915-916 -RRB- denotes )
T15266 916-917 . denotes .
T15267 917-1013 sentence denotes As we have demonstrated previously, this is indicative of a heterozygous genomic deletion [15].
T15268 918-920 IN denotes As
T15270 921-923 PRP denotes we
T15271 924-928 VBP denotes have
T15269 929-941 VBN denotes demonstrated
T15273 942-952 RB denotes previously
T15274 952-954 , denotes ,
T15275 954-958 DT denotes this
T15272 959-961 VBZ denotes is
T15276 962-972 JJ denotes indicative
T15277 973-975 IN denotes of
T15278 976-977 DT denotes a
T15280 978-990 JJ denotes heterozygous
T15281 991-998 JJ denotes genomic
T15279 999-1007 NN denotes deletion
T15282 1008-1009 -LRB- denotes [
T15283 1009-1011 CD denotes 15
T15284 1011-1012 -RRB- denotes ]
T15285 1012-1013 . denotes .
T15286 1013-1113 sentence denotes Below these plots is a schematic of the two known genes affected by this deletion, ITPR1 and SUMF1.
T15287 1014-1019 IN denotes Below
T15289 1020-1025 DT denotes these
T15290 1026-1031 NNS denotes plots
T15288 1032-1034 VBZ denotes is
T15291 1035-1036 DT denotes a
T15292 1037-1046 NN denotes schematic
T15293 1047-1049 IN denotes of
T15294 1050-1053 DT denotes the
T15296 1054-1057 CD denotes two
T15297 1058-1063 VBN denotes known
T15295 1064-1069 NNS denotes genes
T15298 1070-1078 VBN denotes affected
T15299 1079-1081 IN denotes by
T15300 1082-1086 DT denotes this
T15301 1087-1095 NN denotes deletion
T15302 1095-1097 , denotes ,
T15303 1097-1102 NN denotes ITPR1
T15304 1103-1106 CC denotes and
T15305 1107-1112 NN denotes SUMF1
T15306 1112-1113 . denotes .
R4391 T15070 T15069 acl Derived,Metrics
R4392 T15071 T15070 prep from,Derived
R4393 T15072 T15071 pobj Analysis,from
R4394 T15073 T15072 prep of,Analysis
R4395 T15074 T15073 pobj DNA,of
R4396 T15075 T15074 prep from,DNA
R4397 T15076 T15077 amod Affected,Member
R4398 T15077 T15075 pobj Member,from
R4399 T15078 T15077 compound Family,Member
R4400 T15079 T15077 nummod 7,Member
R4401 T15080 T15070 advcl Using,Derived
R4402 T15081 T15082 compound Illumina,HumanHap550
R4403 T15082 T15084 compound HumanHap550,Chips
R4404 T15083 T15082 compound Infinium,HumanHap550
R4405 T15084 T15080 dobj Chips,Using
R4406 T15085 T15084 compound Genotyping,Chips
R4407 T15087 T15088 det The,plots
R4408 T15088 T15092 nsubj plots,are
R4409 T15089 T15088 amod upper,plots
R4410 T15090 T15089 cc and,upper
R4411 T15091 T15089 conj lower,upper
R4412 T15093 T15094 compound log,R
R4413 T15094 T15095 compound R,ratio
R4414 T15095 T15092 attr ratio,are
R4415 T15096 T15095 cc and,ratio
R4416 T15097 T15098 compound B,allele
R4417 T15098 T15099 compound allele,frequency
R4418 T15099 T15095 conj frequency,ratio
R4419 T15100 T15092 punct ", ",are
R4420 T15101 T15092 advmod respectively,are
R4421 T15102 T15092 punct ", ",are
R4422 T15103 T15092 prep at,are
R4423 T15104 T15105 det an,segment
R4424 T15105 T15103 pobj segment,at
R4425 T15106 T15107 punct ~,800
R4426 T15107 T15108 nummod 800,kb
R4427 T15108 T15105 compound kb,segment
R4428 T15109 T15108 punct -,kb
R4429 T15110 T15105 prep on,segment
R4430 T15111 T15112 det the,arm
R4431 T15112 T15110 pobj arm,on
R4432 T15113 T15112 compound p,arm
R4433 T15114 T15112 prep of,arm
R4434 T15115 T15114 pobj Chromosome,of
R4435 T15116 T15115 nummod 3,Chromosome
R4436 T15117 T15092 punct .,are
R4437 T15119 T15120 compound Log,R
R4438 T15120 T15121 compound R,ratio
R4439 T15121 T15122 nsubj ratio,is
R4440 T15123 T15124 det the,ratio
R4441 T15124 T15122 attr ratio,is
R4442 T15125 T15124 prep of,ratio
R4443 T15126 T15127 amod normalized,R
R4444 T15127 T15125 pobj R,of
R4445 T15128 T15127 punct ", ",R
R4446 T15129 T15127 amod observed,R
R4447 T15130 T15124 prep to,ratio
R4448 T15131 T15132 amod expected,R
R4449 T15132 T15130 pobj R,to
R4450 T15133 T15124 prep for,ratio
R4451 T15134 T15135 det each,SNP
R4452 T15135 T15133 pobj SNP,for
R4453 T15136 T15137 punct (,is
R4454 T15137 T15124 parataxis is,ratio
R4455 T15138 T15139 det each,SNP
R4456 T15139 T15137 nsubj SNP,is
R4457 T15140 T15141 det a,dot
R4458 T15141 T15137 attr dot,is
R4459 T15142 T15141 amod blue,dot
R4460 T15143 T15137 punct ),is
R4461 T15144 T15122 cc and,is
R4462 T15145 T15146 advmod thus,serves
R4463 T15146 T15122 conj serves,is
R4464 T15147 T15146 prep as,serves
R4465 T15148 T15149 det a,surrogate
R4466 T15149 T15147 pobj surrogate,as
R4467 T15150 T15149 prep of,surrogate
R4468 T15151 T15152 compound copy,number
R4469 T15152 T15150 pobj number,of
R4470 T15153 T15146 prep at,serves
R4471 T15154 T15155 det each,locus
R4472 T15155 T15153 pobj locus,at
R4473 T15156 T15122 punct .,is
R4474 T15158 T15159 compound B,allele
R4475 T15159 T15160 compound allele,frequency
R4476 T15160 T15161 nsubj frequency,is
R4477 T15162 T15163 det a,measure
R4478 T15163 T15161 attr measure,is
R4479 T15164 T15163 prep of,measure
R4480 T15165 T15166 det the,number
R4481 T15166 T15164 pobj number,of
R4482 T15167 T15166 prep of,number
R4483 T15168 T15167 pobj times,of
R4484 T15169 T15170 det the,alleles
R4485 T15170 T15174 nsubjpass alleles,detected
R4486 T15171 T15170 nmod A,alleles
R4487 T15172 T15171 cc or,A
R4488 T15173 T15171 conj B,A
R4489 T15174 T15168 advcl detected,times
R4490 T15175 T15174 auxpass are,detected
R4491 T15176 T15174 prep at,detected
R4492 T15177 T15178 det each,locus
R4493 T15178 T15176 pobj locus,at
R4494 T15179 T15180 punct (,denoted
R4495 T15180 T15161 parataxis denoted,is
R4496 T15181 T15182 det each,SNP
R4497 T15182 T15180 nsubjpass SNP,denoted
R4498 T15183 T15180 auxpass is,denoted
R4499 T15184 T15180 agent by,denoted
R4500 T15185 T15186 det a,dot
R4501 T15186 T15184 pobj dot,by
R4502 T15187 T15186 amod blue,dot
R4503 T15188 T15180 punct ),denoted
R4504 T15189 T15161 punct .,is
R4505 T15191 T15192 advmod Thus,are
R4506 T15193 T15192 punct ", ",are
R4507 T15194 T15195 nsubj SNPs,are
R4508 T15195 T15192 ccomp are,are
R4509 T15196 T15194 prep with,SNPs
R4510 T15197 T15198 det a,frequency
R4511 T15198 T15196 pobj frequency,with
R4512 T15199 T15200 compound B,allele
R4513 T15200 T15198 compound allele,frequency
R4514 T15201 T15198 prep of,frequency
R4515 T15202 T15201 pobj one,of
R4516 T15203 T15204 amod apparent,homozygotes
R4517 T15204 T15195 attr homozygotes,are
R4518 T15205 T15206 compound B,B
R4519 T15206 T15204 compound B,homozygotes
R4520 T15207 T15206 punct /,B
R4521 T15208 T15192 punct ", ",are
R4522 T15209 T15192 nsubj SNPs,are
R4523 T15210 T15209 prep with,SNPs
R4524 T15211 T15212 det a,frequency
R4525 T15212 T15210 pobj frequency,with
R4526 T15213 T15214 compound B,allele
R4527 T15214 T15212 compound allele,frequency
R4528 T15215 T15212 prep of,frequency
R4529 T15216 T15215 pobj 0.5,of
R4530 T15217 T15218 amod apparent,heterozygotes
R4531 T15218 T15192 attr heterozygotes,are
R4532 T15219 T15220 compound A,B
R4533 T15220 T15218 compound B,heterozygotes
R4534 T15221 T15220 punct /,B
R4535 T15222 T15192 punct ", ",are
R4536 T15223 T15192 cc and,are
R4537 T15224 T15225 nsubj those,are
R4538 T15225 T15192 conj are,are
R4539 T15226 T15224 prep with,those
R4540 T15227 T15228 det a,frequency
R4541 T15228 T15226 pobj frequency,with
R4542 T15229 T15230 compound B,allele
R4543 T15230 T15228 compound allele,frequency
R4544 T15231 T15228 prep of,frequency
R4545 T15232 T15231 pobj zero,of
R4546 T15233 T15234 amod apparent,homozygotes
R4547 T15234 T15225 attr homozygotes,are
R4548 T15235 T15236 compound A,A
R4549 T15236 T15234 compound A,homozygotes
R4550 T15237 T15236 punct /,A
R4551 T15238 T15225 punct .,are
R4552 T15240 T15241 advmod Clearly,show
R4553 T15242 T15241 punct ", ",show
R4554 T15243 T15244 det these,plots
R4555 T15244 T15241 nsubj plots,show
R4556 T15245 T15246 det a,region
R4557 T15246 T15241 dobj region,show
R4558 T15247 T15246 amod contiguous,region
R4559 T15248 T15249 punct ~,200
R4560 T15249 T15250 nummod 200,kb
R4561 T15250 T15251 npadvmod kb,long
R4562 T15251 T15246 amod long,region
R4563 T15252 T15246 prep with,region
R4564 T15253 T15254 amod decreased,number
R4565 T15254 T15252 pobj number,with
R4566 T15255 T15254 compound copy,number
R4567 T15256 T15254 cc and,number
R4568 T15257 T15258 amod apparent,homozygosity
R4569 T15258 T15254 conj homozygosity,number
R4570 T15259 T15246 punct (,region
R4571 T15260 T15246 acl bounded,region
R4572 T15261 T15260 agent by,bounded
R4573 T15262 T15263 det a,box
R4574 T15263 T15261 pobj box,by
R4575 T15264 T15263 amod red,box
R4576 T15265 T15241 punct ),show
R4577 T15266 T15241 punct .,show
R4578 T15268 T15269 mark As,demonstrated
R4579 T15269 T15272 advcl demonstrated,is
R4580 T15270 T15269 nsubj we,demonstrated
R4581 T15271 T15269 aux have,demonstrated
R4582 T15273 T15269 advmod previously,demonstrated
R4583 T15274 T15272 punct ", ",is
R4584 T15275 T15272 nsubj this,is
R4585 T15276 T15272 acomp indicative,is
R4586 T15277 T15276 prep of,indicative
R4587 T15278 T15279 det a,deletion
R4588 T15279 T15277 pobj deletion,of
R4589 T15280 T15279 amod heterozygous,deletion
R4590 T15281 T15279 amod genomic,deletion
R4591 T15282 T15283 punct [,15
R4592 T15283 T15272 parataxis 15,is
R4593 T15284 T15283 punct ],15
R4594 T15285 T15272 punct .,is
R4595 T15287 T15288 prep Below,is
R4596 T15289 T15290 det these,plots
R4597 T15290 T15287 pobj plots,Below
R4598 T15291 T15292 det a,schematic
R4599 T15292 T15288 nsubj schematic,is
R4600 T15293 T15292 prep of,schematic
R4601 T15294 T15295 det the,genes
R4602 T15295 T15293 pobj genes,of
R4603 T15296 T15295 nummod two,genes
R4604 T15297 T15295 amod known,genes
R4605 T15298 T15295 acl affected,genes
R4606 T15299 T15298 agent by,affected
R4607 T15300 T15301 det this,deletion
R4608 T15301 T15299 pobj deletion,by
R4609 T15302 T15295 punct ", ",genes
R4610 T15303 T15295 appos ITPR1,genes
R4611 T15304 T15303 cc and,ITPR1
R4612 T15305 T15303 conj SUMF1,ITPR1
R4613 T15306 T15288 punct .,is