Id |
Subject |
Object |
Predicate |
Lexical cue |
T10938 |
0-6 |
NNS |
denotes |
Brains |
T10940 |
7-11 |
VBD |
denotes |
were |
T10939 |
12-20 |
VBN |
denotes |
isolated |
T10941 |
21-25 |
IN |
denotes |
from |
T10942 |
26-28 |
CD |
denotes |
21 |
T10944 |
28-29 |
HYPH |
denotes |
- |
T10943 |
29-30 |
NN |
denotes |
d |
T10946 |
30-31 |
HYPH |
denotes |
- |
T10945 |
31-34 |
JJ |
denotes |
old |
T10947 |
35-39 |
NNS |
denotes |
mice |
T10948 |
39-41 |
, |
denotes |
, |
T10949 |
41-49 |
VBN |
denotes |
perfused |
T10950 |
50-54 |
IN |
denotes |
with |
T10951 |
55-56 |
CD |
denotes |
4 |
T10952 |
56-57 |
NN |
denotes |
% |
T10953 |
58-74 |
NN |
denotes |
paraformaldehyde |
T10954 |
75-77 |
IN |
denotes |
in |
T10955 |
78-81 |
NN |
denotes |
PBS |
T10956 |
81-83 |
, |
denotes |
, |
T10957 |
83-86 |
CC |
denotes |
and |
T10958 |
87-97 |
VBN |
denotes |
post-fixed |
T10959 |
98-107 |
RB |
denotes |
overnight |
T10960 |
108-110 |
IN |
denotes |
in |
T10961 |
111-114 |
DT |
denotes |
the |
T10963 |
115-119 |
JJ |
denotes |
same |
T10962 |
120-128 |
NN |
denotes |
fixative |
T10964 |
128-129 |
. |
denotes |
. |
T10965 |
129-291 |
sentence |
denotes |
Brains were embedded in gelatin, and 35-μm sagittal sections were cut using a sliding microtome (NeuroScience Associates, http://www.neuroscienceassociates.com). |
T10966 |
130-136 |
NNS |
denotes |
Brains |
T10968 |
137-141 |
VBD |
denotes |
were |
T10967 |
142-150 |
VBN |
denotes |
embedded |
T10969 |
151-153 |
IN |
denotes |
in |
T10970 |
154-161 |
NN |
denotes |
gelatin |
T10971 |
161-163 |
, |
denotes |
, |
T10972 |
163-166 |
CC |
denotes |
and |
T10973 |
167-169 |
CD |
denotes |
35 |
T10975 |
169-170 |
HYPH |
denotes |
- |
T10974 |
170-172 |
NN |
denotes |
μm |
T10977 |
173-181 |
JJ |
denotes |
sagittal |
T10976 |
182-190 |
NNS |
denotes |
sections |
T10979 |
191-195 |
VBD |
denotes |
were |
T10978 |
196-199 |
VBN |
denotes |
cut |
T10980 |
200-205 |
VBG |
denotes |
using |
T10981 |
206-207 |
DT |
denotes |
a |
T10983 |
208-215 |
VBG |
denotes |
sliding |
T10982 |
216-225 |
NN |
denotes |
microtome |
T10984 |
226-227 |
-LRB- |
denotes |
( |
T10986 |
227-239 |
NNP |
denotes |
NeuroScience |
T10985 |
240-250 |
NNP |
denotes |
Associates |
T10987 |
250-252 |
, |
denotes |
, |
T10988 |
252-289 |
NN |
denotes |
http://www.neuroscienceassociates.com |
T10989 |
289-290 |
-RRB- |
denotes |
) |
T10990 |
290-291 |
. |
denotes |
. |
T10991 |
291-392 |
sentence |
denotes |
Sections from wild-type, heterozygote, and homozygous brains were placed in the MultiBrain template. |
T10992 |
292-300 |
NNS |
denotes |
Sections |
T10994 |
301-305 |
IN |
denotes |
from |
T10995 |
306-310 |
JJ |
denotes |
wild |
T10997 |
310-311 |
HYPH |
denotes |
- |
T10996 |
311-315 |
NN |
denotes |
type |
T10999 |
315-317 |
, |
denotes |
, |
T11000 |
317-329 |
NN |
denotes |
heterozygote |
T11001 |
329-331 |
, |
denotes |
, |
T11002 |
331-334 |
CC |
denotes |
and |
T11003 |
335-345 |
JJ |
denotes |
homozygous |
T10998 |
346-352 |
NNS |
denotes |
brains |
T11004 |
353-357 |
VBD |
denotes |
were |
T10993 |
358-364 |
VBN |
denotes |
placed |
T11005 |
365-367 |
IN |
denotes |
in |
T11006 |
368-371 |
DT |
denotes |
the |
T11008 |
372-382 |
NN |
denotes |
MultiBrain |
T11007 |
383-391 |
NN |
denotes |
template |
T11009 |
391-392 |
. |
denotes |
. |
T11010 |
392-545 |
sentence |
denotes |
Sections were washed in 1× PBS prior to 1 h of incubation in block solution containing 1× PBS with 20% normal goat serum and 0.3% Triton X-100 (pH 7.4). |
T11011 |
393-401 |
NNS |
denotes |
Sections |
T11013 |
402-406 |
VBD |
denotes |
were |
T11012 |
407-413 |
VBN |
denotes |
washed |
T11014 |
414-416 |
IN |
denotes |
in |
T11015 |
417-418 |
CD |
denotes |
1 |
T11017 |
418-419 |
SYM |
denotes |
× |
T11016 |
420-423 |
NN |
denotes |
PBS |
T11018 |
424-429 |
RB |
denotes |
prior |
T11019 |
430-432 |
IN |
denotes |
to |
T11020 |
433-434 |
CD |
denotes |
1 |
T11021 |
435-436 |
NN |
denotes |
h |
T11022 |
437-439 |
IN |
denotes |
of |
T11023 |
440-450 |
NN |
denotes |
incubation |
T11024 |
451-453 |
IN |
denotes |
in |
T11025 |
454-459 |
NN |
denotes |
block |
T11026 |
460-468 |
NN |
denotes |
solution |
T11027 |
469-479 |
VBG |
denotes |
containing |
T11028 |
480-481 |
CD |
denotes |
1 |
T11030 |
481-482 |
SYM |
denotes |
× |
T11029 |
483-486 |
NN |
denotes |
PBS |
T11031 |
487-491 |
IN |
denotes |
with |
T11032 |
492-494 |
CD |
denotes |
20 |
T11033 |
494-495 |
NN |
denotes |
% |
T11035 |
496-502 |
JJ |
denotes |
normal |
T11036 |
503-507 |
NN |
denotes |
goat |
T11034 |
508-513 |
NN |
denotes |
serum |
T11037 |
514-517 |
CC |
denotes |
and |
T11038 |
518-521 |
CD |
denotes |
0.3 |
T11039 |
521-522 |
NN |
denotes |
% |
T11041 |
523-529 |
NN |
denotes |
Triton |
T11040 |
530-531 |
NN |
denotes |
X |
T11042 |
531-532 |
HYPH |
denotes |
- |
T11043 |
532-535 |
CD |
denotes |
100 |
T11044 |
536-537 |
-LRB- |
denotes |
( |
T11045 |
537-539 |
NN |
denotes |
pH |
T11046 |
540-543 |
CD |
denotes |
7.4 |
T11047 |
543-544 |
-RRB- |
denotes |
) |
T11048 |
544-545 |
. |
denotes |
. |
T11049 |
545-831 |
sentence |
denotes |
Sections were incubated overnight at 4 °C in primary antibodies: affinity purified polyclonal Itpr1 antibody (1:2,000, Chemicon International, http://www.chemicon.com) and monoclonal anti-Calb1 antibody (1:6,000, Sigma-Aldrich, http://www.sigmaaldrich.com) diluted in carrier solution. |
T11050 |
546-554 |
NNS |
denotes |
Sections |
T11052 |
555-559 |
VBD |
denotes |
were |
T11051 |
560-569 |
VBN |
denotes |
incubated |
T11053 |
570-579 |
RB |
denotes |
overnight |
T11054 |
580-582 |
IN |
denotes |
at |
T11055 |
583-584 |
CD |
denotes |
4 |
T11056 |
585-587 |
NN |
denotes |
°C |
T11057 |
588-590 |
IN |
denotes |
in |
T11058 |
591-598 |
JJ |
denotes |
primary |
T11059 |
599-609 |
NNS |
denotes |
antibodies |
T11060 |
609-611 |
: |
denotes |
: |
T11061 |
611-619 |
NN |
denotes |
affinity |
T11063 |
620-628 |
VBN |
denotes |
purified |
T11064 |
629-639 |
JJ |
denotes |
polyclonal |
T11065 |
640-645 |
NN |
denotes |
Itpr1 |
T11062 |
646-654 |
NN |
denotes |
antibody |
T11066 |
655-656 |
-LRB- |
denotes |
( |
T11068 |
656-657 |
CD |
denotes |
1 |
T11069 |
657-658 |
SYM |
denotes |
: |
T11070 |
658-663 |
CD |
denotes |
2,000 |
T11071 |
663-665 |
, |
denotes |
, |
T11072 |
665-673 |
NNP |
denotes |
Chemicon |
T11067 |
674-687 |
NNP |
denotes |
International |
T11073 |
687-689 |
, |
denotes |
, |
T11074 |
689-712 |
NN |
denotes |
http://www.chemicon.com |
T11075 |
712-713 |
-RRB- |
denotes |
) |
T11076 |
714-717 |
CC |
denotes |
and |
T11077 |
718-728 |
JJ |
denotes |
monoclonal |
T11079 |
729-739 |
JJ |
denotes |
anti-Calb1 |
T11078 |
740-748 |
NN |
denotes |
antibody |
T11080 |
749-750 |
-LRB- |
denotes |
( |
T11082 |
750-751 |
CD |
denotes |
1 |
T11083 |
751-752 |
SYM |
denotes |
: |
T11084 |
752-757 |
CD |
denotes |
6,000 |
T11085 |
757-759 |
, |
denotes |
, |
T11086 |
759-764 |
NNP |
denotes |
Sigma |
T11087 |
764-765 |
HYPH |
denotes |
- |
T11081 |
765-772 |
NNP |
denotes |
Aldrich |
T11088 |
772-774 |
, |
denotes |
, |
T11089 |
774-801 |
NN |
denotes |
http://www.sigmaaldrich.com |
T11090 |
801-802 |
-RRB- |
denotes |
) |
T11091 |
803-810 |
VBN |
denotes |
diluted |
T11092 |
811-813 |
IN |
denotes |
in |
T11093 |
814-821 |
NN |
denotes |
carrier |
T11094 |
822-830 |
NN |
denotes |
solution |
T11095 |
830-831 |
. |
denotes |
. |
T11096 |
831-1101 |
sentence |
denotes |
Following extensive washes (in 6.0 ml of PBS, three times), sections were incubated with appropriate secondary antibodies (Alexa Fluor 555 goat anti-rabbit IgG and Alexa Fluor 488 goat anti-mouse IgG [Invitrogen, http://www.invitrogen.com]) for 1 h at room temperature. |
T11097 |
832-841 |
VBG |
denotes |
Following |
T11099 |
842-851 |
JJ |
denotes |
extensive |
T11100 |
852-858 |
NNS |
denotes |
washes |
T11101 |
859-860 |
-LRB- |
denotes |
( |
T11102 |
860-862 |
IN |
denotes |
in |
T11103 |
863-866 |
CD |
denotes |
6.0 |
T11104 |
867-869 |
NN |
denotes |
ml |
T11105 |
870-872 |
IN |
denotes |
of |
T11106 |
873-876 |
NN |
denotes |
PBS |
T11107 |
876-878 |
, |
denotes |
, |
T11109 |
878-883 |
CD |
denotes |
three |
T11108 |
884-889 |
NNS |
denotes |
times |
T11110 |
889-890 |
-RRB- |
denotes |
) |
T11111 |
890-892 |
, |
denotes |
, |
T11112 |
892-900 |
NNS |
denotes |
sections |
T11113 |
901-905 |
VBD |
denotes |
were |
T11098 |
906-915 |
VBN |
denotes |
incubated |
T11114 |
916-920 |
IN |
denotes |
with |
T11115 |
921-932 |
JJ |
denotes |
appropriate |
T11117 |
933-942 |
JJ |
denotes |
secondary |
T11116 |
943-953 |
NNS |
denotes |
antibodies |
T11118 |
954-955 |
-LRB- |
denotes |
( |
T11120 |
955-960 |
NNP |
denotes |
Alexa |
T11121 |
961-966 |
NNP |
denotes |
Fluor |
T11122 |
967-970 |
CD |
denotes |
555 |
T11123 |
971-975 |
NN |
denotes |
goat |
T11124 |
976-987 |
JJ |
denotes |
anti-rabbit |
T11119 |
988-991 |
NN |
denotes |
IgG |
T11125 |
992-995 |
CC |
denotes |
and |
T11126 |
996-1001 |
NNP |
denotes |
Alexa |
T11127 |
1002-1007 |
NNP |
denotes |
Fluor |
T11129 |
1008-1011 |
CD |
denotes |
488 |
T11130 |
1012-1016 |
NN |
denotes |
goat |
T11131 |
1017-1027 |
JJ |
denotes |
anti-mouse |
T11128 |
1028-1031 |
NN |
denotes |
IgG |
T11132 |
1032-1033 |
-LRB- |
denotes |
[ |
T11133 |
1033-1043 |
NNP |
denotes |
Invitrogen |
T11134 |
1043-1045 |
, |
denotes |
, |
T11135 |
1045-1070 |
NN |
denotes |
http://www.invitrogen.com |
T11136 |
1070-1071 |
-RRB- |
denotes |
] |
T11137 |
1071-1072 |
-RRB- |
denotes |
) |
T11138 |
1073-1076 |
IN |
denotes |
for |
T11139 |
1077-1078 |
CD |
denotes |
1 |
T11140 |
1079-1080 |
NN |
denotes |
h |
T11141 |
1081-1083 |
IN |
denotes |
at |
T11142 |
1084-1088 |
NN |
denotes |
room |
T11143 |
1089-1100 |
NN |
denotes |
temperature |
T11144 |
1100-1101 |
. |
denotes |
. |
T11145 |
1101-1260 |
sentence |
denotes |
Sections were washed and mounted on glass slides in a buffered medium containing Mowiol (Calbiochem, http://www.emdbiosciences.com) as described earlier [14]. |
T11146 |
1102-1110 |
NNS |
denotes |
Sections |
T11148 |
1111-1115 |
VBD |
denotes |
were |
T11147 |
1116-1122 |
VBN |
denotes |
washed |
T11149 |
1123-1126 |
CC |
denotes |
and |
T11150 |
1127-1134 |
VBN |
denotes |
mounted |
T11151 |
1135-1137 |
IN |
denotes |
on |
T11152 |
1138-1143 |
NN |
denotes |
glass |
T11153 |
1144-1150 |
NNS |
denotes |
slides |
T11154 |
1151-1153 |
IN |
denotes |
in |
T11155 |
1154-1155 |
DT |
denotes |
a |
T11157 |
1156-1164 |
VBN |
denotes |
buffered |
T11156 |
1165-1171 |
NN |
denotes |
medium |
T11158 |
1172-1182 |
VBG |
denotes |
containing |
T11159 |
1183-1189 |
NN |
denotes |
Mowiol |
T11160 |
1190-1191 |
-LRB- |
denotes |
( |
T11161 |
1191-1201 |
NNP |
denotes |
Calbiochem |
T11162 |
1201-1203 |
, |
denotes |
, |
T11163 |
1203-1232 |
NN |
denotes |
http://www.emdbiosciences.com |
T11164 |
1232-1233 |
-RRB- |
denotes |
) |
T11165 |
1234-1236 |
IN |
denotes |
as |
T11166 |
1237-1246 |
VBN |
denotes |
described |
T11167 |
1247-1254 |
RBR |
denotes |
earlier |
T11168 |
1255-1256 |
-LRB- |
denotes |
[ |
T11169 |
1256-1258 |
CD |
denotes |
14 |
T11170 |
1258-1259 |
-RRB- |
denotes |
] |
T11171 |
1259-1260 |
. |
denotes |
. |
T11172 |
1260-1364 |
sentence |
denotes |
Sections were imaged using a laser scanning confocal microscope (LSM 510; Zeiss, http://www.zeiss.com). |
T11173 |
1261-1269 |
NNS |
denotes |
Sections |
T11175 |
1270-1274 |
VBD |
denotes |
were |
T11174 |
1275-1281 |
VBN |
denotes |
imaged |
T11176 |
1282-1287 |
VBG |
denotes |
using |
T11177 |
1288-1289 |
DT |
denotes |
a |
T11179 |
1290-1295 |
NN |
denotes |
laser |
T11180 |
1296-1304 |
VBG |
denotes |
scanning |
T11181 |
1305-1313 |
JJ |
denotes |
confocal |
T11178 |
1314-1324 |
NN |
denotes |
microscope |
T11182 |
1325-1326 |
-LRB- |
denotes |
( |
T11184 |
1326-1329 |
NN |
denotes |
LSM |
T11185 |
1330-1333 |
CD |
denotes |
510 |
T11186 |
1333-1334 |
: |
denotes |
; |
T11183 |
1335-1340 |
NNP |
denotes |
Zeiss |
T11187 |
1340-1342 |
, |
denotes |
, |
T11188 |
1342-1362 |
NN |
denotes |
http://www.zeiss.com |
T11189 |
1362-1363 |
-RRB- |
denotes |
) |
T11190 |
1363-1364 |
. |
denotes |
. |
T11191 |
1364-1523 |
sentence |
denotes |
Imaging parameters (pinhole, detector gain, laser power) were optimized, and were kept constant for the wild-type, heterozygous, and homozygous mutant brains. |
T11192 |
1365-1372 |
NN |
denotes |
Imaging |
T11193 |
1373-1383 |
NNS |
denotes |
parameters |
T11195 |
1384-1385 |
-LRB- |
denotes |
( |
T11196 |
1385-1392 |
NN |
denotes |
pinhole |
T11197 |
1392-1394 |
, |
denotes |
, |
T11198 |
1394-1402 |
NN |
denotes |
detector |
T11199 |
1403-1407 |
NN |
denotes |
gain |
T11200 |
1407-1409 |
, |
denotes |
, |
T11201 |
1409-1414 |
NN |
denotes |
laser |
T11202 |
1415-1420 |
NN |
denotes |
power |
T11203 |
1420-1421 |
-RRB- |
denotes |
) |
T11204 |
1422-1426 |
VBD |
denotes |
were |
T11194 |
1427-1436 |
VBN |
denotes |
optimized |
T11205 |
1436-1438 |
, |
denotes |
, |
T11206 |
1438-1441 |
CC |
denotes |
and |
T11207 |
1442-1446 |
VBD |
denotes |
were |
T11208 |
1447-1451 |
VBN |
denotes |
kept |
T11209 |
1452-1460 |
JJ |
denotes |
constant |
T11210 |
1461-1464 |
IN |
denotes |
for |
T11211 |
1465-1468 |
DT |
denotes |
the |
T11213 |
1469-1473 |
JJ |
denotes |
wild |
T11215 |
1473-1474 |
HYPH |
denotes |
- |
T11214 |
1474-1478 |
NN |
denotes |
type |
T11216 |
1478-1480 |
, |
denotes |
, |
T11217 |
1480-1492 |
JJ |
denotes |
heterozygous |
T11218 |
1492-1494 |
, |
denotes |
, |
T11219 |
1494-1497 |
CC |
denotes |
and |
T11220 |
1498-1508 |
JJ |
denotes |
homozygous |
T11221 |
1509-1515 |
NN |
denotes |
mutant |
T11212 |
1516-1522 |
NNS |
denotes |
brains |
T11222 |
1522-1523 |
. |
denotes |
. |
T11223 |
1523-1610 |
sentence |
denotes |
Specificity of the Itpr1 antibodies was verified by preabsorption control experiments. |
T11224 |
1524-1535 |
NN |
denotes |
Specificity |
T11226 |
1536-1538 |
IN |
denotes |
of |
T11227 |
1539-1542 |
DT |
denotes |
the |
T11229 |
1543-1548 |
NN |
denotes |
Itpr1 |
T11228 |
1549-1559 |
NNS |
denotes |
antibodies |
T11230 |
1560-1563 |
VBD |
denotes |
was |
T11225 |
1564-1572 |
VBN |
denotes |
verified |
T11231 |
1573-1575 |
IN |
denotes |
by |
T11232 |
1576-1589 |
NN |
denotes |
preabsorption |
T11234 |
1590-1597 |
NN |
denotes |
control |
T11233 |
1598-1609 |
NNS |
denotes |
experiments |
T11235 |
1609-1610 |
. |
denotes |
. |
T11236 |
1610-1690 |
sentence |
denotes |
Antibody dilutions were incubated for 24 h at 4 °C with the immunizing peptide. |
T11237 |
1611-1619 |
NN |
denotes |
Antibody |
T11238 |
1620-1629 |
NNS |
denotes |
dilutions |
T11240 |
1630-1634 |
VBD |
denotes |
were |
T11239 |
1635-1644 |
VBN |
denotes |
incubated |
T11241 |
1645-1648 |
IN |
denotes |
for |
T11242 |
1649-1651 |
CD |
denotes |
24 |
T11243 |
1652-1653 |
NN |
denotes |
h |
T11244 |
1654-1656 |
IN |
denotes |
at |
T11245 |
1657-1658 |
CD |
denotes |
4 |
T11246 |
1659-1661 |
NN |
denotes |
°C |
T11247 |
1662-1666 |
IN |
denotes |
with |
T11248 |
1667-1670 |
DT |
denotes |
the |
T11250 |
1671-1681 |
VBG |
denotes |
immunizing |
T11249 |
1682-1689 |
NN |
denotes |
peptide |
T11251 |
1689-1690 |
. |
denotes |
. |
T11252 |
1690-1787 |
sentence |
denotes |
Tissue sections were incubated with the preabsorbed antibodies and processed as described above. |
T11253 |
1691-1697 |
NN |
denotes |
Tissue |
T11254 |
1698-1706 |
NNS |
denotes |
sections |
T11256 |
1707-1711 |
VBD |
denotes |
were |
T11255 |
1712-1721 |
VBN |
denotes |
incubated |
T11257 |
1722-1726 |
IN |
denotes |
with |
T11258 |
1727-1730 |
DT |
denotes |
the |
T11260 |
1731-1742 |
VBN |
denotes |
preabsorbed |
T11259 |
1743-1753 |
NNS |
denotes |
antibodies |
T11261 |
1754-1757 |
CC |
denotes |
and |
T11262 |
1758-1767 |
VBN |
denotes |
processed |
T11263 |
1768-1770 |
IN |
denotes |
as |
T11264 |
1771-1780 |
VBN |
denotes |
described |
T11265 |
1781-1786 |
RB |
denotes |
above |
T11266 |
1786-1787 |
. |
denotes |
. |
T11267 |
1787-1860 |
sentence |
denotes |
Under these conditions, no staining above autofluorescence was detected. |
T11268 |
1788-1793 |
IN |
denotes |
Under |
T11270 |
1794-1799 |
DT |
denotes |
these |
T11271 |
1800-1810 |
NNS |
denotes |
conditions |
T11272 |
1810-1812 |
, |
denotes |
, |
T11273 |
1812-1814 |
DT |
denotes |
no |
T11274 |
1815-1823 |
NN |
denotes |
staining |
T11275 |
1824-1829 |
IN |
denotes |
above |
T11276 |
1830-1846 |
NN |
denotes |
autofluorescence |
T11277 |
1847-1850 |
VBD |
denotes |
was |
T11269 |
1851-1859 |
VBN |
denotes |
detected |
T11278 |
1859-1860 |
. |
denotes |
. |
R3037 |
T10938 |
T10939 |
nsubjpass |
Brains,isolated |
R3038 |
T10940 |
T10939 |
auxpass |
were,isolated |
R3039 |
T10941 |
T10939 |
prep |
from,isolated |
R3040 |
T10942 |
T10943 |
nummod |
21,d |
R3041 |
T10943 |
T10945 |
npadvmod |
d,old |
R3042 |
T10944 |
T10943 |
punct |
-,d |
R3043 |
T10945 |
T10947 |
amod |
old,mice |
R3044 |
T10946 |
T10945 |
punct |
-,old |
R3045 |
T10947 |
T10941 |
pobj |
mice,from |
R3046 |
T10948 |
T10939 |
punct |
", ",isolated |
R3047 |
T10949 |
T10939 |
conj |
perfused,isolated |
R3048 |
T10950 |
T10949 |
prep |
with,perfused |
R3049 |
T10951 |
T10952 |
nummod |
4,% |
R3050 |
T10952 |
T10953 |
compound |
%,paraformaldehyde |
R3051 |
T10953 |
T10950 |
pobj |
paraformaldehyde,with |
R3052 |
T10954 |
T10953 |
prep |
in,paraformaldehyde |
R3053 |
T10955 |
T10954 |
pobj |
PBS,in |
R3054 |
T10956 |
T10949 |
punct |
", ",perfused |
R3055 |
T10957 |
T10949 |
cc |
and,perfused |
R3056 |
T10958 |
T10949 |
conj |
post-fixed,perfused |
R3057 |
T10959 |
T10958 |
advmod |
overnight,post-fixed |
R3058 |
T10960 |
T10958 |
prep |
in,post-fixed |
R3059 |
T10961 |
T10962 |
det |
the,fixative |
R3060 |
T10962 |
T10960 |
pobj |
fixative,in |
R3061 |
T10963 |
T10962 |
amod |
same,fixative |
R3062 |
T10964 |
T10939 |
punct |
.,isolated |
R3063 |
T10966 |
T10967 |
nsubjpass |
Brains,embedded |
R3064 |
T10968 |
T10967 |
auxpass |
were,embedded |
R3065 |
T10969 |
T10967 |
prep |
in,embedded |
R3066 |
T10970 |
T10969 |
pobj |
gelatin,in |
R3067 |
T10971 |
T10967 |
punct |
", ",embedded |
R3068 |
T10972 |
T10967 |
cc |
and,embedded |
R3069 |
T10973 |
T10974 |
nummod |
35,μm |
R3070 |
T10974 |
T10976 |
nmod |
μm,sections |
R3071 |
T10975 |
T10974 |
punct |
-,μm |
R3072 |
T10976 |
T10978 |
nsubjpass |
sections,cut |
R3073 |
T10977 |
T10976 |
amod |
sagittal,sections |
R3074 |
T10978 |
T10967 |
conj |
cut,embedded |
R3075 |
T10979 |
T10978 |
auxpass |
were,cut |
R3076 |
T10980 |
T10978 |
advcl |
using,cut |
R3077 |
T10981 |
T10982 |
det |
a,microtome |
R3078 |
T10982 |
T10980 |
dobj |
microtome,using |
R3079 |
T10983 |
T10982 |
amod |
sliding,microtome |
R3080 |
T10984 |
T10985 |
punct |
(,Associates |
R3081 |
T10985 |
T10982 |
parataxis |
Associates,microtome |
R3082 |
T10986 |
T10985 |
compound |
NeuroScience,Associates |
R3083 |
T10987 |
T10985 |
punct |
", ",Associates |
R3084 |
T10988 |
T10985 |
npadvmod |
http://www.neuroscienceassociates.com,Associates |
R3085 |
T10989 |
T10985 |
punct |
),Associates |
R3086 |
T10990 |
T10978 |
punct |
.,cut |
R3087 |
T10992 |
T10993 |
nsubjpass |
Sections,placed |
R3088 |
T10994 |
T10992 |
prep |
from,Sections |
R3089 |
T10995 |
T10996 |
amod |
wild,type |
R3090 |
T10996 |
T10998 |
nmod |
type,brains |
R3091 |
T10997 |
T10996 |
punct |
-,type |
R3092 |
T10998 |
T10994 |
pobj |
brains,from |
R3093 |
T10999 |
T10996 |
punct |
", ",type |
R3094 |
T11000 |
T10996 |
conj |
heterozygote,type |
R3095 |
T11001 |
T11000 |
punct |
", ",heterozygote |
R3096 |
T11002 |
T11000 |
cc |
and,heterozygote |
R3097 |
T11003 |
T11000 |
conj |
homozygous,heterozygote |
R3098 |
T11004 |
T10993 |
auxpass |
were,placed |
R3099 |
T11005 |
T10993 |
prep |
in,placed |
R3100 |
T11006 |
T11007 |
det |
the,template |
R3101 |
T11007 |
T11005 |
pobj |
template,in |
R3102 |
T11008 |
T11007 |
compound |
MultiBrain,template |
R3103 |
T11009 |
T10993 |
punct |
.,placed |
R3104 |
T11011 |
T11012 |
nsubjpass |
Sections,washed |
R3105 |
T11013 |
T11012 |
auxpass |
were,washed |
R3106 |
T11014 |
T11012 |
prep |
in,washed |
R3107 |
T11015 |
T11016 |
nummod |
1,PBS |
R3108 |
T11016 |
T11014 |
pobj |
PBS,in |
R3109 |
T11017 |
T11015 |
punct |
×,1 |
R3110 |
T11018 |
T11019 |
advmod |
prior,to |
R3111 |
T11019 |
T11012 |
prep |
to,washed |
R3112 |
T11020 |
T11021 |
nummod |
1,h |
R3113 |
T11021 |
T11019 |
pobj |
h,to |
R3114 |
T11022 |
T11021 |
prep |
of,h |
R3115 |
T11023 |
T11022 |
pobj |
incubation,of |
R3116 |
T11024 |
T11023 |
prep |
in,incubation |
R3117 |
T11025 |
T11026 |
compound |
block,solution |
R3118 |
T11026 |
T11024 |
pobj |
solution,in |
R3119 |
T11027 |
T11026 |
acl |
containing,solution |
R3120 |
T11028 |
T11029 |
nummod |
1,PBS |
R3121 |
T11029 |
T11027 |
dobj |
PBS,containing |
R3122 |
T11030 |
T11028 |
punct |
×,1 |
R3123 |
T11031 |
T11029 |
prep |
with,PBS |
R3124 |
T11032 |
T11033 |
nummod |
20,% |
R3125 |
T11033 |
T11034 |
nmod |
%,serum |
R3126 |
T11034 |
T11031 |
pobj |
serum,with |
R3127 |
T11035 |
T11034 |
amod |
normal,serum |
R3128 |
T11036 |
T11034 |
compound |
goat,serum |
R3129 |
T11037 |
T11034 |
cc |
and,serum |
R3130 |
T11038 |
T11039 |
nummod |
0.3,% |
R3131 |
T11039 |
T11040 |
compound |
%,X |
R3132 |
T11040 |
T11034 |
conj |
X,serum |
R3133 |
T11041 |
T11040 |
compound |
Triton,X |
R3134 |
T11042 |
T11040 |
punct |
-,X |
R3135 |
T11043 |
T11040 |
nummod |
100,X |
R3136 |
T11044 |
T11045 |
punct |
(,pH |
R3137 |
T11045 |
T11040 |
parataxis |
pH,X |
R3138 |
T11046 |
T11045 |
nummod |
7.4,pH |
R3139 |
T11047 |
T11045 |
punct |
),pH |
R3140 |
T11048 |
T11012 |
punct |
.,washed |
R3141 |
T11050 |
T11051 |
nsubjpass |
Sections,incubated |
R3142 |
T11052 |
T11051 |
auxpass |
were,incubated |
R3143 |
T11053 |
T11051 |
advmod |
overnight,incubated |
R3144 |
T11054 |
T11051 |
prep |
at,incubated |
R3145 |
T11055 |
T11056 |
nummod |
4,°C |
R3146 |
T11056 |
T11054 |
pobj |
°C,at |
R3147 |
T11057 |
T11051 |
prep |
in,incubated |
R3148 |
T11058 |
T11059 |
amod |
primary,antibodies |
R3149 |
T11059 |
T11057 |
pobj |
antibodies,in |
R3150 |
T11060 |
T11059 |
punct |
: ,antibodies |
R3151 |
T11061 |
T11062 |
nmod |
affinity,antibody |
R3152 |
T11062 |
T11059 |
appos |
antibody,antibodies |
R3153 |
T11063 |
T11062 |
amod |
purified,antibody |
R3154 |
T11064 |
T11062 |
amod |
polyclonal,antibody |
R3155 |
T11065 |
T11062 |
compound |
Itpr1,antibody |
R3156 |
T11066 |
T11067 |
punct |
(,International |
R3157 |
T11067 |
T11062 |
parataxis |
International,antibody |
R3158 |
T11068 |
T11067 |
dep |
1,International |
R3159 |
T11069 |
T11070 |
punct |
:,"2,000" |
R3160 |
T11070 |
T11068 |
prep |
"2,000",1 |
R3161 |
T11071 |
T11067 |
punct |
", ",International |
R3162 |
T11072 |
T11067 |
compound |
Chemicon,International |
R3163 |
T11073 |
T11067 |
punct |
", ",International |
R3164 |
T11074 |
T11067 |
npadvmod |
http://www.chemicon.com,International |
R3165 |
T11075 |
T11067 |
punct |
),International |
R3166 |
T11076 |
T11062 |
cc |
and,antibody |
R3167 |
T11077 |
T11078 |
amod |
monoclonal,antibody |
R3168 |
T11078 |
T11062 |
conj |
antibody,antibody |
R3169 |
T11079 |
T11078 |
amod |
anti-Calb1,antibody |
R3170 |
T11080 |
T11081 |
punct |
(,Aldrich |
R3171 |
T11081 |
T11078 |
parataxis |
Aldrich,antibody |
R3172 |
T11082 |
T11081 |
dep |
1,Aldrich |
R3173 |
T11083 |
T11084 |
punct |
:,"6,000" |
R3174 |
T11084 |
T11082 |
prep |
"6,000",1 |
R3175 |
T11085 |
T11081 |
punct |
", ",Aldrich |
R3176 |
T11086 |
T11081 |
compound |
Sigma,Aldrich |
R3177 |
T11087 |
T11081 |
punct |
-,Aldrich |
R3178 |
T11088 |
T11081 |
punct |
", ",Aldrich |
R3179 |
T11089 |
T11081 |
npadvmod |
http://www.sigmaaldrich.com,Aldrich |
R3180 |
T11090 |
T11081 |
punct |
),Aldrich |
R3181 |
T11091 |
T11062 |
acl |
diluted,antibody |
R3182 |
T11092 |
T11091 |
prep |
in,diluted |
R3183 |
T11093 |
T11094 |
compound |
carrier,solution |
R3184 |
T11094 |
T11092 |
pobj |
solution,in |
R3185 |
T11095 |
T11051 |
punct |
.,incubated |
R3186 |
T11097 |
T11098 |
prep |
Following,incubated |
R3187 |
T11099 |
T11100 |
amod |
extensive,washes |
R3188 |
T11100 |
T11097 |
pobj |
washes,Following |
R3189 |
T11101 |
T11100 |
punct |
(,washes |
R3190 |
T11102 |
T11100 |
prep |
in,washes |
R3191 |
T11103 |
T11104 |
nummod |
6.0,ml |
R3192 |
T11104 |
T11102 |
pobj |
ml,in |
R3193 |
T11105 |
T11104 |
prep |
of,ml |
R3194 |
T11106 |
T11105 |
pobj |
PBS,of |
R3195 |
T11107 |
T11108 |
punct |
", ",times |
R3196 |
T11108 |
T11100 |
parataxis |
times,washes |
R3197 |
T11109 |
T11108 |
nummod |
three,times |
R3198 |
T11110 |
T11108 |
punct |
),times |
R3199 |
T11111 |
T11098 |
punct |
", ",incubated |
R3200 |
T11112 |
T11098 |
nsubjpass |
sections,incubated |
R3201 |
T11113 |
T11098 |
auxpass |
were,incubated |
R3202 |
T11114 |
T11098 |
prep |
with,incubated |
R3203 |
T11115 |
T11116 |
amod |
appropriate,antibodies |
R3204 |
T11116 |
T11114 |
pobj |
antibodies,with |
R3205 |
T11117 |
T11116 |
amod |
secondary,antibodies |
R3206 |
T11118 |
T11119 |
punct |
(,IgG |
R3207 |
T11119 |
T11116 |
parataxis |
IgG,antibodies |
R3208 |
T11120 |
T11121 |
nmod |
Alexa,Fluor |
R3209 |
T11121 |
T11119 |
nmod |
Fluor,IgG |
R3210 |
T11122 |
T11121 |
nummod |
555,Fluor |
R3211 |
T11123 |
T11119 |
nmod |
goat,IgG |
R3212 |
T11124 |
T11119 |
amod |
anti-rabbit,IgG |
R3213 |
T11125 |
T11119 |
cc |
and,IgG |
R3214 |
T11126 |
T11127 |
nmod |
Alexa,Fluor |
R3215 |
T11127 |
T11128 |
nmod |
Fluor,IgG |
R3216 |
T11128 |
T11119 |
conj |
IgG,IgG |
R3217 |
T11129 |
T11127 |
nummod |
488,Fluor |
R3218 |
T11130 |
T11128 |
nmod |
goat,IgG |
R3219 |
T11131 |
T11128 |
amod |
anti-mouse,IgG |
R3220 |
T11132 |
T11133 |
punct |
[,Invitrogen |
R3221 |
T11133 |
T11128 |
parataxis |
Invitrogen,IgG |
R3222 |
T11134 |
T11133 |
punct |
", ",Invitrogen |
R3223 |
T11135 |
T11133 |
npadvmod |
http://www.invitrogen.com,Invitrogen |
R3224 |
T11136 |
T11133 |
punct |
],Invitrogen |
R3225 |
T11137 |
T11119 |
punct |
),IgG |
R3226 |
T11138 |
T11098 |
prep |
for,incubated |
R3227 |
T11139 |
T11140 |
nummod |
1,h |
R3228 |
T11140 |
T11138 |
pobj |
h,for |
R3229 |
T11141 |
T11098 |
prep |
at,incubated |
R3230 |
T11142 |
T11143 |
compound |
room,temperature |
R3231 |
T11143 |
T11141 |
pobj |
temperature,at |
R3232 |
T11144 |
T11098 |
punct |
.,incubated |
R3233 |
T11146 |
T11147 |
nsubjpass |
Sections,washed |
R3234 |
T11148 |
T11147 |
auxpass |
were,washed |
R3235 |
T11149 |
T11147 |
cc |
and,washed |
R3236 |
T11150 |
T11147 |
conj |
mounted,washed |
R3237 |
T11151 |
T11150 |
prep |
on,mounted |
R3238 |
T11152 |
T11153 |
compound |
glass,slides |
R3239 |
T11153 |
T11151 |
pobj |
slides,on |
R3240 |
T11154 |
T11150 |
prep |
in,mounted |
R3241 |
T11155 |
T11156 |
det |
a,medium |
R3242 |
T11156 |
T11154 |
pobj |
medium,in |
R3243 |
T11157 |
T11156 |
amod |
buffered,medium |
R3244 |
T11158 |
T11156 |
acl |
containing,medium |
R3245 |
T11159 |
T11158 |
dobj |
Mowiol,containing |
R3246 |
T11160 |
T11161 |
punct |
(,Calbiochem |
R3247 |
T11161 |
T11159 |
parataxis |
Calbiochem,Mowiol |
R3248 |
T11162 |
T11161 |
punct |
", ",Calbiochem |
R3249 |
T11163 |
T11161 |
npadvmod |
http://www.emdbiosciences.com,Calbiochem |
R3250 |
T11164 |
T11161 |
punct |
),Calbiochem |
R3251 |
T11165 |
T11166 |
mark |
as,described |
R3252 |
T11166 |
T11150 |
advcl |
described,mounted |
R3253 |
T11167 |
T11166 |
advmod |
earlier,described |
R3254 |
T11168 |
T11169 |
punct |
[,14 |
R3255 |
T11169 |
T11150 |
parataxis |
14,mounted |
R3256 |
T11170 |
T11169 |
punct |
],14 |
R3257 |
T11171 |
T11147 |
punct |
.,washed |
R3258 |
T11173 |
T11174 |
nsubjpass |
Sections,imaged |
R3259 |
T11175 |
T11174 |
auxpass |
were,imaged |
R3260 |
T11176 |
T11174 |
advcl |
using,imaged |
R3261 |
T11177 |
T11178 |
det |
a,microscope |
R3262 |
T11178 |
T11176 |
dobj |
microscope,using |
R3263 |
T11179 |
T11178 |
nmod |
laser,microscope |
R3264 |
T11180 |
T11178 |
amod |
scanning,microscope |
R3265 |
T11181 |
T11178 |
amod |
confocal,microscope |
R3266 |
T11182 |
T11183 |
punct |
(,Zeiss |
R3267 |
T11183 |
T11178 |
parataxis |
Zeiss,microscope |
R3268 |
T11184 |
T11183 |
dep |
LSM,Zeiss |
R3269 |
T11185 |
T11184 |
nummod |
510,LSM |
R3270 |
T11186 |
T11183 |
punct |
;,Zeiss |
R3271 |
T11187 |
T11183 |
punct |
", ",Zeiss |
R3272 |
T11188 |
T11183 |
npadvmod |
http://www.zeiss.com,Zeiss |
R3273 |
T11189 |
T11183 |
punct |
),Zeiss |
R3274 |
T11190 |
T11174 |
punct |
.,imaged |
R3275 |
T11192 |
T11193 |
compound |
Imaging,parameters |
R3276 |
T11193 |
T11194 |
nsubjpass |
parameters,optimized |
R3277 |
T11195 |
T11196 |
punct |
(,pinhole |
R3278 |
T11196 |
T11193 |
parataxis |
pinhole,parameters |
R3279 |
T11197 |
T11196 |
punct |
", ",pinhole |
R3280 |
T11198 |
T11199 |
compound |
detector,gain |
R3281 |
T11199 |
T11196 |
appos |
gain,pinhole |
R3282 |
T11200 |
T11196 |
punct |
", ",pinhole |
R3283 |
T11201 |
T11202 |
compound |
laser,power |
R3284 |
T11202 |
T11196 |
appos |
power,pinhole |
R3285 |
T11203 |
T11196 |
punct |
),pinhole |
R3286 |
T11204 |
T11194 |
auxpass |
were,optimized |
R3287 |
T11205 |
T11194 |
punct |
", ",optimized |
R3288 |
T11206 |
T11194 |
cc |
and,optimized |
R3289 |
T11207 |
T11208 |
auxpass |
were,kept |
R3290 |
T11208 |
T11194 |
conj |
kept,optimized |
R3291 |
T11209 |
T11208 |
oprd |
constant,kept |
R3292 |
T11210 |
T11208 |
prep |
for,kept |
R3293 |
T11211 |
T11212 |
det |
the,brains |
R3294 |
T11212 |
T11210 |
pobj |
brains,for |
R3295 |
T11213 |
T11214 |
amod |
wild,type |
R3296 |
T11214 |
T11212 |
nmod |
type,brains |
R3297 |
T11215 |
T11214 |
punct |
-,type |
R3298 |
T11216 |
T11214 |
punct |
", ",type |
R3299 |
T11217 |
T11214 |
conj |
heterozygous,type |
R3300 |
T11218 |
T11217 |
punct |
", ",heterozygous |
R3301 |
T11219 |
T11217 |
cc |
and,heterozygous |
R3302 |
T11220 |
T11217 |
conj |
homozygous,heterozygous |
R3303 |
T11221 |
T11212 |
compound |
mutant,brains |
R3304 |
T11222 |
T11194 |
punct |
.,optimized |
R3305 |
T11224 |
T11225 |
nsubjpass |
Specificity,verified |
R3306 |
T11226 |
T11224 |
prep |
of,Specificity |
R3307 |
T11227 |
T11228 |
det |
the,antibodies |
R3308 |
T11228 |
T11226 |
pobj |
antibodies,of |
R3309 |
T11229 |
T11228 |
compound |
Itpr1,antibodies |
R3310 |
T11230 |
T11225 |
auxpass |
was,verified |
R3311 |
T11231 |
T11225 |
prep |
by,verified |
R3312 |
T11232 |
T11233 |
compound |
preabsorption,experiments |
R3313 |
T11233 |
T11231 |
pobj |
experiments,by |
R3314 |
T11234 |
T11233 |
compound |
control,experiments |
R3315 |
T11235 |
T11225 |
punct |
.,verified |
R3316 |
T11237 |
T11238 |
compound |
Antibody,dilutions |
R3317 |
T11238 |
T11239 |
nsubjpass |
dilutions,incubated |
R3318 |
T11240 |
T11239 |
auxpass |
were,incubated |
R3319 |
T11241 |
T11239 |
prep |
for,incubated |
R3320 |
T11242 |
T11243 |
nummod |
24,h |
R3321 |
T11243 |
T11241 |
pobj |
h,for |
R3322 |
T11244 |
T11239 |
prep |
at,incubated |
R3323 |
T11245 |
T11246 |
nummod |
4,°C |
R3324 |
T11246 |
T11244 |
pobj |
°C,at |
R3325 |
T11247 |
T11239 |
prep |
with,incubated |
R3326 |
T11248 |
T11249 |
det |
the,peptide |
R3327 |
T11249 |
T11247 |
pobj |
peptide,with |
R3328 |
T11250 |
T11249 |
amod |
immunizing,peptide |
R3329 |
T11251 |
T11239 |
punct |
.,incubated |
R3330 |
T11253 |
T11254 |
compound |
Tissue,sections |
R3331 |
T11254 |
T11255 |
nsubjpass |
sections,incubated |
R3332 |
T11256 |
T11255 |
auxpass |
were,incubated |
R3333 |
T11257 |
T11255 |
prep |
with,incubated |
R3334 |
T11258 |
T11259 |
det |
the,antibodies |
R3335 |
T11259 |
T11257 |
pobj |
antibodies,with |
R3336 |
T11260 |
T11259 |
amod |
preabsorbed,antibodies |
R3337 |
T11261 |
T11255 |
cc |
and,incubated |
R3338 |
T11262 |
T11255 |
conj |
processed,incubated |
R3339 |
T11263 |
T11264 |
mark |
as,described |
R3340 |
T11264 |
T11262 |
advcl |
described,processed |
R3341 |
T11265 |
T11264 |
advmod |
above,described |
R3342 |
T11266 |
T11255 |
punct |
.,incubated |
R3343 |
T11268 |
T11269 |
prep |
Under,detected |
R3344 |
T11270 |
T11271 |
det |
these,conditions |
R3345 |
T11271 |
T11268 |
pobj |
conditions,Under |
R3346 |
T11272 |
T11269 |
punct |
", ",detected |
R3347 |
T11273 |
T11274 |
det |
no,staining |
R3348 |
T11274 |
T11269 |
nsubjpass |
staining,detected |
R3349 |
T11275 |
T11274 |
prep |
above,staining |
R3350 |
T11276 |
T11275 |
pobj |
autofluorescence,above |
R3351 |
T11277 |
T11269 |
auxpass |
was,detected |
R3352 |
T11278 |
T11269 |
punct |
.,detected |