Id |
Subject |
Object |
Predicate |
Lexical cue |
T10935 |
0-20 |
NN |
denotes |
Immunohistochemistry |
T10936 |
20-21 |
. |
denotes |
. |
T10937 |
21-151 |
sentence |
denotes |
Brains were isolated from 21-d-old mice, perfused with 4% paraformaldehyde in PBS, and post-fixed overnight in the same fixative. |
T10938 |
22-28 |
NNS |
denotes |
Brains |
T10940 |
29-33 |
VBD |
denotes |
were |
T10939 |
34-42 |
VBN |
denotes |
isolated |
T10941 |
43-47 |
IN |
denotes |
from |
T10942 |
48-50 |
CD |
denotes |
21 |
T10944 |
50-51 |
HYPH |
denotes |
- |
T10943 |
51-52 |
NN |
denotes |
d |
T10946 |
52-53 |
HYPH |
denotes |
- |
T10945 |
53-56 |
JJ |
denotes |
old |
T10947 |
57-61 |
NNS |
denotes |
mice |
T10948 |
61-63 |
, |
denotes |
, |
T10949 |
63-71 |
VBN |
denotes |
perfused |
T10950 |
72-76 |
IN |
denotes |
with |
T10951 |
77-78 |
CD |
denotes |
4 |
T10952 |
78-79 |
NN |
denotes |
% |
T10953 |
80-96 |
NN |
denotes |
paraformaldehyde |
T10954 |
97-99 |
IN |
denotes |
in |
T10955 |
100-103 |
NN |
denotes |
PBS |
T10956 |
103-105 |
, |
denotes |
, |
T10957 |
105-108 |
CC |
denotes |
and |
T10958 |
109-119 |
VBN |
denotes |
post-fixed |
T10959 |
120-129 |
RB |
denotes |
overnight |
T10960 |
130-132 |
IN |
denotes |
in |
T10961 |
133-136 |
DT |
denotes |
the |
T10963 |
137-141 |
JJ |
denotes |
same |
T10962 |
142-150 |
NN |
denotes |
fixative |
T10964 |
150-151 |
. |
denotes |
. |
T10965 |
151-313 |
sentence |
denotes |
Brains were embedded in gelatin, and 35-μm sagittal sections were cut using a sliding microtome (NeuroScience Associates, http://www.neuroscienceassociates.com). |
T10966 |
152-158 |
NNS |
denotes |
Brains |
T10968 |
159-163 |
VBD |
denotes |
were |
T10967 |
164-172 |
VBN |
denotes |
embedded |
T10969 |
173-175 |
IN |
denotes |
in |
T10970 |
176-183 |
NN |
denotes |
gelatin |
T10971 |
183-185 |
, |
denotes |
, |
T10972 |
185-188 |
CC |
denotes |
and |
T10973 |
189-191 |
CD |
denotes |
35 |
T10975 |
191-192 |
HYPH |
denotes |
- |
T10974 |
192-194 |
NN |
denotes |
μm |
T10977 |
195-203 |
JJ |
denotes |
sagittal |
T10976 |
204-212 |
NNS |
denotes |
sections |
T10979 |
213-217 |
VBD |
denotes |
were |
T10978 |
218-221 |
VBN |
denotes |
cut |
T10980 |
222-227 |
VBG |
denotes |
using |
T10981 |
228-229 |
DT |
denotes |
a |
T10983 |
230-237 |
VBG |
denotes |
sliding |
T10982 |
238-247 |
NN |
denotes |
microtome |
T10984 |
248-249 |
-LRB- |
denotes |
( |
T10986 |
249-261 |
NNP |
denotes |
NeuroScience |
T10985 |
262-272 |
NNP |
denotes |
Associates |
T10987 |
272-274 |
, |
denotes |
, |
T10988 |
274-311 |
NN |
denotes |
http://www.neuroscienceassociates.com |
T10989 |
311-312 |
-RRB- |
denotes |
) |
T10990 |
312-313 |
. |
denotes |
. |
T10991 |
313-414 |
sentence |
denotes |
Sections from wild-type, heterozygote, and homozygous brains were placed in the MultiBrain template. |
T10992 |
314-322 |
NNS |
denotes |
Sections |
T10994 |
323-327 |
IN |
denotes |
from |
T10995 |
328-332 |
JJ |
denotes |
wild |
T10997 |
332-333 |
HYPH |
denotes |
- |
T10996 |
333-337 |
NN |
denotes |
type |
T10999 |
337-339 |
, |
denotes |
, |
T11000 |
339-351 |
NN |
denotes |
heterozygote |
T11001 |
351-353 |
, |
denotes |
, |
T11002 |
353-356 |
CC |
denotes |
and |
T11003 |
357-367 |
JJ |
denotes |
homozygous |
T10998 |
368-374 |
NNS |
denotes |
brains |
T11004 |
375-379 |
VBD |
denotes |
were |
T10993 |
380-386 |
VBN |
denotes |
placed |
T11005 |
387-389 |
IN |
denotes |
in |
T11006 |
390-393 |
DT |
denotes |
the |
T11008 |
394-404 |
NN |
denotes |
MultiBrain |
T11007 |
405-413 |
NN |
denotes |
template |
T11009 |
413-414 |
. |
denotes |
. |
T11010 |
414-567 |
sentence |
denotes |
Sections were washed in 1× PBS prior to 1 h of incubation in block solution containing 1× PBS with 20% normal goat serum and 0.3% Triton X-100 (pH 7.4). |
T11011 |
415-423 |
NNS |
denotes |
Sections |
T11013 |
424-428 |
VBD |
denotes |
were |
T11012 |
429-435 |
VBN |
denotes |
washed |
T11014 |
436-438 |
IN |
denotes |
in |
T11015 |
439-440 |
CD |
denotes |
1 |
T11017 |
440-441 |
SYM |
denotes |
× |
T11016 |
442-445 |
NN |
denotes |
PBS |
T11018 |
446-451 |
RB |
denotes |
prior |
T11019 |
452-454 |
IN |
denotes |
to |
T11020 |
455-456 |
CD |
denotes |
1 |
T11021 |
457-458 |
NN |
denotes |
h |
T11022 |
459-461 |
IN |
denotes |
of |
T11023 |
462-472 |
NN |
denotes |
incubation |
T11024 |
473-475 |
IN |
denotes |
in |
T11025 |
476-481 |
NN |
denotes |
block |
T11026 |
482-490 |
NN |
denotes |
solution |
T11027 |
491-501 |
VBG |
denotes |
containing |
T11028 |
502-503 |
CD |
denotes |
1 |
T11030 |
503-504 |
SYM |
denotes |
× |
T11029 |
505-508 |
NN |
denotes |
PBS |
T11031 |
509-513 |
IN |
denotes |
with |
T11032 |
514-516 |
CD |
denotes |
20 |
T11033 |
516-517 |
NN |
denotes |
% |
T11035 |
518-524 |
JJ |
denotes |
normal |
T11036 |
525-529 |
NN |
denotes |
goat |
T11034 |
530-535 |
NN |
denotes |
serum |
T11037 |
536-539 |
CC |
denotes |
and |
T11038 |
540-543 |
CD |
denotes |
0.3 |
T11039 |
543-544 |
NN |
denotes |
% |
T11041 |
545-551 |
NN |
denotes |
Triton |
T11040 |
552-553 |
NN |
denotes |
X |
T11042 |
553-554 |
HYPH |
denotes |
- |
T11043 |
554-557 |
CD |
denotes |
100 |
T11044 |
558-559 |
-LRB- |
denotes |
( |
T11045 |
559-561 |
NN |
denotes |
pH |
T11046 |
562-565 |
CD |
denotes |
7.4 |
T11047 |
565-566 |
-RRB- |
denotes |
) |
T11048 |
566-567 |
. |
denotes |
. |
T11049 |
567-853 |
sentence |
denotes |
Sections were incubated overnight at 4 °C in primary antibodies: affinity purified polyclonal Itpr1 antibody (1:2,000, Chemicon International, http://www.chemicon.com) and monoclonal anti-Calb1 antibody (1:6,000, Sigma-Aldrich, http://www.sigmaaldrich.com) diluted in carrier solution. |
T11050 |
568-576 |
NNS |
denotes |
Sections |
T11052 |
577-581 |
VBD |
denotes |
were |
T11051 |
582-591 |
VBN |
denotes |
incubated |
T11053 |
592-601 |
RB |
denotes |
overnight |
T11054 |
602-604 |
IN |
denotes |
at |
T11055 |
605-606 |
CD |
denotes |
4 |
T11056 |
607-609 |
NN |
denotes |
°C |
T11057 |
610-612 |
IN |
denotes |
in |
T11058 |
613-620 |
JJ |
denotes |
primary |
T11059 |
621-631 |
NNS |
denotes |
antibodies |
T11060 |
631-633 |
: |
denotes |
: |
T11061 |
633-641 |
NN |
denotes |
affinity |
T11063 |
642-650 |
VBN |
denotes |
purified |
T11064 |
651-661 |
JJ |
denotes |
polyclonal |
T11065 |
662-667 |
NN |
denotes |
Itpr1 |
T11062 |
668-676 |
NN |
denotes |
antibody |
T11066 |
677-678 |
-LRB- |
denotes |
( |
T11068 |
678-679 |
CD |
denotes |
1 |
T11069 |
679-680 |
SYM |
denotes |
: |
T11070 |
680-685 |
CD |
denotes |
2,000 |
T11071 |
685-687 |
, |
denotes |
, |
T11072 |
687-695 |
NNP |
denotes |
Chemicon |
T11067 |
696-709 |
NNP |
denotes |
International |
T11073 |
709-711 |
, |
denotes |
, |
T11074 |
711-734 |
NN |
denotes |
http://www.chemicon.com |
T11075 |
734-735 |
-RRB- |
denotes |
) |
T11076 |
736-739 |
CC |
denotes |
and |
T11077 |
740-750 |
JJ |
denotes |
monoclonal |
T11079 |
751-761 |
JJ |
denotes |
anti-Calb1 |
T11078 |
762-770 |
NN |
denotes |
antibody |
T11080 |
771-772 |
-LRB- |
denotes |
( |
T11082 |
772-773 |
CD |
denotes |
1 |
T11083 |
773-774 |
SYM |
denotes |
: |
T11084 |
774-779 |
CD |
denotes |
6,000 |
T11085 |
779-781 |
, |
denotes |
, |
T11086 |
781-786 |
NNP |
denotes |
Sigma |
T11087 |
786-787 |
HYPH |
denotes |
- |
T11081 |
787-794 |
NNP |
denotes |
Aldrich |
T11088 |
794-796 |
, |
denotes |
, |
T11089 |
796-823 |
NN |
denotes |
http://www.sigmaaldrich.com |
T11090 |
823-824 |
-RRB- |
denotes |
) |
T11091 |
825-832 |
VBN |
denotes |
diluted |
T11092 |
833-835 |
IN |
denotes |
in |
T11093 |
836-843 |
NN |
denotes |
carrier |
T11094 |
844-852 |
NN |
denotes |
solution |
T11095 |
852-853 |
. |
denotes |
. |
T11096 |
853-1123 |
sentence |
denotes |
Following extensive washes (in 6.0 ml of PBS, three times), sections were incubated with appropriate secondary antibodies (Alexa Fluor 555 goat anti-rabbit IgG and Alexa Fluor 488 goat anti-mouse IgG [Invitrogen, http://www.invitrogen.com]) for 1 h at room temperature. |
T11097 |
854-863 |
VBG |
denotes |
Following |
T11099 |
864-873 |
JJ |
denotes |
extensive |
T11100 |
874-880 |
NNS |
denotes |
washes |
T11101 |
881-882 |
-LRB- |
denotes |
( |
T11102 |
882-884 |
IN |
denotes |
in |
T11103 |
885-888 |
CD |
denotes |
6.0 |
T11104 |
889-891 |
NN |
denotes |
ml |
T11105 |
892-894 |
IN |
denotes |
of |
T11106 |
895-898 |
NN |
denotes |
PBS |
T11107 |
898-900 |
, |
denotes |
, |
T11109 |
900-905 |
CD |
denotes |
three |
T11108 |
906-911 |
NNS |
denotes |
times |
T11110 |
911-912 |
-RRB- |
denotes |
) |
T11111 |
912-914 |
, |
denotes |
, |
T11112 |
914-922 |
NNS |
denotes |
sections |
T11113 |
923-927 |
VBD |
denotes |
were |
T11098 |
928-937 |
VBN |
denotes |
incubated |
T11114 |
938-942 |
IN |
denotes |
with |
T11115 |
943-954 |
JJ |
denotes |
appropriate |
T11117 |
955-964 |
JJ |
denotes |
secondary |
T11116 |
965-975 |
NNS |
denotes |
antibodies |
T11118 |
976-977 |
-LRB- |
denotes |
( |
T11120 |
977-982 |
NNP |
denotes |
Alexa |
T11121 |
983-988 |
NNP |
denotes |
Fluor |
T11122 |
989-992 |
CD |
denotes |
555 |
T11123 |
993-997 |
NN |
denotes |
goat |
T11124 |
998-1009 |
JJ |
denotes |
anti-rabbit |
T11119 |
1010-1013 |
NN |
denotes |
IgG |
T11125 |
1014-1017 |
CC |
denotes |
and |
T11126 |
1018-1023 |
NNP |
denotes |
Alexa |
T11127 |
1024-1029 |
NNP |
denotes |
Fluor |
T11129 |
1030-1033 |
CD |
denotes |
488 |
T11130 |
1034-1038 |
NN |
denotes |
goat |
T11131 |
1039-1049 |
JJ |
denotes |
anti-mouse |
T11128 |
1050-1053 |
NN |
denotes |
IgG |
T11132 |
1054-1055 |
-LRB- |
denotes |
[ |
T11133 |
1055-1065 |
NNP |
denotes |
Invitrogen |
T11134 |
1065-1067 |
, |
denotes |
, |
T11135 |
1067-1092 |
NN |
denotes |
http://www.invitrogen.com |
T11136 |
1092-1093 |
-RRB- |
denotes |
] |
T11137 |
1093-1094 |
-RRB- |
denotes |
) |
T11138 |
1095-1098 |
IN |
denotes |
for |
T11139 |
1099-1100 |
CD |
denotes |
1 |
T11140 |
1101-1102 |
NN |
denotes |
h |
T11141 |
1103-1105 |
IN |
denotes |
at |
T11142 |
1106-1110 |
NN |
denotes |
room |
T11143 |
1111-1122 |
NN |
denotes |
temperature |
T11144 |
1122-1123 |
. |
denotes |
. |
T11145 |
1123-1282 |
sentence |
denotes |
Sections were washed and mounted on glass slides in a buffered medium containing Mowiol (Calbiochem, http://www.emdbiosciences.com) as described earlier [14]. |
T11146 |
1124-1132 |
NNS |
denotes |
Sections |
T11148 |
1133-1137 |
VBD |
denotes |
were |
T11147 |
1138-1144 |
VBN |
denotes |
washed |
T11149 |
1145-1148 |
CC |
denotes |
and |
T11150 |
1149-1156 |
VBN |
denotes |
mounted |
T11151 |
1157-1159 |
IN |
denotes |
on |
T11152 |
1160-1165 |
NN |
denotes |
glass |
T11153 |
1166-1172 |
NNS |
denotes |
slides |
T11154 |
1173-1175 |
IN |
denotes |
in |
T11155 |
1176-1177 |
DT |
denotes |
a |
T11157 |
1178-1186 |
VBN |
denotes |
buffered |
T11156 |
1187-1193 |
NN |
denotes |
medium |
T11158 |
1194-1204 |
VBG |
denotes |
containing |
T11159 |
1205-1211 |
NN |
denotes |
Mowiol |
T11160 |
1212-1213 |
-LRB- |
denotes |
( |
T11161 |
1213-1223 |
NNP |
denotes |
Calbiochem |
T11162 |
1223-1225 |
, |
denotes |
, |
T11163 |
1225-1254 |
NN |
denotes |
http://www.emdbiosciences.com |
T11164 |
1254-1255 |
-RRB- |
denotes |
) |
T11165 |
1256-1258 |
IN |
denotes |
as |
T11166 |
1259-1268 |
VBN |
denotes |
described |
T11167 |
1269-1276 |
RBR |
denotes |
earlier |
T11168 |
1277-1278 |
-LRB- |
denotes |
[ |
T11169 |
1278-1280 |
CD |
denotes |
14 |
T11170 |
1280-1281 |
-RRB- |
denotes |
] |
T11171 |
1281-1282 |
. |
denotes |
. |
T11172 |
1282-1386 |
sentence |
denotes |
Sections were imaged using a laser scanning confocal microscope (LSM 510; Zeiss, http://www.zeiss.com). |
T11173 |
1283-1291 |
NNS |
denotes |
Sections |
T11175 |
1292-1296 |
VBD |
denotes |
were |
T11174 |
1297-1303 |
VBN |
denotes |
imaged |
T11176 |
1304-1309 |
VBG |
denotes |
using |
T11177 |
1310-1311 |
DT |
denotes |
a |
T11179 |
1312-1317 |
NN |
denotes |
laser |
T11180 |
1318-1326 |
VBG |
denotes |
scanning |
T11181 |
1327-1335 |
JJ |
denotes |
confocal |
T11178 |
1336-1346 |
NN |
denotes |
microscope |
T11182 |
1347-1348 |
-LRB- |
denotes |
( |
T11184 |
1348-1351 |
NN |
denotes |
LSM |
T11185 |
1352-1355 |
CD |
denotes |
510 |
T11186 |
1355-1356 |
: |
denotes |
; |
T11183 |
1357-1362 |
NNP |
denotes |
Zeiss |
T11187 |
1362-1364 |
, |
denotes |
, |
T11188 |
1364-1384 |
NN |
denotes |
http://www.zeiss.com |
T11189 |
1384-1385 |
-RRB- |
denotes |
) |
T11190 |
1385-1386 |
. |
denotes |
. |
T11191 |
1386-1545 |
sentence |
denotes |
Imaging parameters (pinhole, detector gain, laser power) were optimized, and were kept constant for the wild-type, heterozygous, and homozygous mutant brains. |
T11192 |
1387-1394 |
NN |
denotes |
Imaging |
T11193 |
1395-1405 |
NNS |
denotes |
parameters |
T11195 |
1406-1407 |
-LRB- |
denotes |
( |
T11196 |
1407-1414 |
NN |
denotes |
pinhole |
T11197 |
1414-1416 |
, |
denotes |
, |
T11198 |
1416-1424 |
NN |
denotes |
detector |
T11199 |
1425-1429 |
NN |
denotes |
gain |
T11200 |
1429-1431 |
, |
denotes |
, |
T11201 |
1431-1436 |
NN |
denotes |
laser |
T11202 |
1437-1442 |
NN |
denotes |
power |
T11203 |
1442-1443 |
-RRB- |
denotes |
) |
T11204 |
1444-1448 |
VBD |
denotes |
were |
T11194 |
1449-1458 |
VBN |
denotes |
optimized |
T11205 |
1458-1460 |
, |
denotes |
, |
T11206 |
1460-1463 |
CC |
denotes |
and |
T11207 |
1464-1468 |
VBD |
denotes |
were |
T11208 |
1469-1473 |
VBN |
denotes |
kept |
T11209 |
1474-1482 |
JJ |
denotes |
constant |
T11210 |
1483-1486 |
IN |
denotes |
for |
T11211 |
1487-1490 |
DT |
denotes |
the |
T11213 |
1491-1495 |
JJ |
denotes |
wild |
T11215 |
1495-1496 |
HYPH |
denotes |
- |
T11214 |
1496-1500 |
NN |
denotes |
type |
T11216 |
1500-1502 |
, |
denotes |
, |
T11217 |
1502-1514 |
JJ |
denotes |
heterozygous |
T11218 |
1514-1516 |
, |
denotes |
, |
T11219 |
1516-1519 |
CC |
denotes |
and |
T11220 |
1520-1530 |
JJ |
denotes |
homozygous |
T11221 |
1531-1537 |
NN |
denotes |
mutant |
T11212 |
1538-1544 |
NNS |
denotes |
brains |
T11222 |
1544-1545 |
. |
denotes |
. |
T11223 |
1545-1632 |
sentence |
denotes |
Specificity of the Itpr1 antibodies was verified by preabsorption control experiments. |
T11224 |
1546-1557 |
NN |
denotes |
Specificity |
T11226 |
1558-1560 |
IN |
denotes |
of |
T11227 |
1561-1564 |
DT |
denotes |
the |
T11229 |
1565-1570 |
NN |
denotes |
Itpr1 |
T11228 |
1571-1581 |
NNS |
denotes |
antibodies |
T11230 |
1582-1585 |
VBD |
denotes |
was |
T11225 |
1586-1594 |
VBN |
denotes |
verified |
T11231 |
1595-1597 |
IN |
denotes |
by |
T11232 |
1598-1611 |
NN |
denotes |
preabsorption |
T11234 |
1612-1619 |
NN |
denotes |
control |
T11233 |
1620-1631 |
NNS |
denotes |
experiments |
T11235 |
1631-1632 |
. |
denotes |
. |
T11236 |
1632-1712 |
sentence |
denotes |
Antibody dilutions were incubated for 24 h at 4 °C with the immunizing peptide. |
T11237 |
1633-1641 |
NN |
denotes |
Antibody |
T11238 |
1642-1651 |
NNS |
denotes |
dilutions |
T11240 |
1652-1656 |
VBD |
denotes |
were |
T11239 |
1657-1666 |
VBN |
denotes |
incubated |
T11241 |
1667-1670 |
IN |
denotes |
for |
T11242 |
1671-1673 |
CD |
denotes |
24 |
T11243 |
1674-1675 |
NN |
denotes |
h |
T11244 |
1676-1678 |
IN |
denotes |
at |
T11245 |
1679-1680 |
CD |
denotes |
4 |
T11246 |
1681-1683 |
NN |
denotes |
°C |
T11247 |
1684-1688 |
IN |
denotes |
with |
T11248 |
1689-1692 |
DT |
denotes |
the |
T11250 |
1693-1703 |
VBG |
denotes |
immunizing |
T11249 |
1704-1711 |
NN |
denotes |
peptide |
T11251 |
1711-1712 |
. |
denotes |
. |
T11252 |
1712-1809 |
sentence |
denotes |
Tissue sections were incubated with the preabsorbed antibodies and processed as described above. |
T11253 |
1713-1719 |
NN |
denotes |
Tissue |
T11254 |
1720-1728 |
NNS |
denotes |
sections |
T11256 |
1729-1733 |
VBD |
denotes |
were |
T11255 |
1734-1743 |
VBN |
denotes |
incubated |
T11257 |
1744-1748 |
IN |
denotes |
with |
T11258 |
1749-1752 |
DT |
denotes |
the |
T11260 |
1753-1764 |
VBN |
denotes |
preabsorbed |
T11259 |
1765-1775 |
NNS |
denotes |
antibodies |
T11261 |
1776-1779 |
CC |
denotes |
and |
T11262 |
1780-1789 |
VBN |
denotes |
processed |
T11263 |
1790-1792 |
IN |
denotes |
as |
T11264 |
1793-1802 |
VBN |
denotes |
described |
T11265 |
1803-1808 |
RB |
denotes |
above |
T11266 |
1808-1809 |
. |
denotes |
. |
T11267 |
1809-1882 |
sentence |
denotes |
Under these conditions, no staining above autofluorescence was detected. |
T11268 |
1810-1815 |
IN |
denotes |
Under |
T11270 |
1816-1821 |
DT |
denotes |
these |
T11271 |
1822-1832 |
NNS |
denotes |
conditions |
T11272 |
1832-1834 |
, |
denotes |
, |
T11273 |
1834-1836 |
DT |
denotes |
no |
T11274 |
1837-1845 |
NN |
denotes |
staining |
T11275 |
1846-1851 |
IN |
denotes |
above |
T11276 |
1852-1868 |
NN |
denotes |
autofluorescence |
T11277 |
1869-1872 |
VBD |
denotes |
was |
T11269 |
1873-1881 |
VBN |
denotes |
detected |
T11278 |
1881-1882 |
. |
denotes |
. |
R3036 |
T10936 |
T10935 |
punct |
.,Immunohistochemistry |
R3037 |
T10938 |
T10939 |
nsubjpass |
Brains,isolated |
R3038 |
T10940 |
T10939 |
auxpass |
were,isolated |
R3039 |
T10941 |
T10939 |
prep |
from,isolated |
R3040 |
T10942 |
T10943 |
nummod |
21,d |
R3041 |
T10943 |
T10945 |
npadvmod |
d,old |
R3042 |
T10944 |
T10943 |
punct |
-,d |
R3043 |
T10945 |
T10947 |
amod |
old,mice |
R3044 |
T10946 |
T10945 |
punct |
-,old |
R3045 |
T10947 |
T10941 |
pobj |
mice,from |
R3046 |
T10948 |
T10939 |
punct |
", ",isolated |
R3047 |
T10949 |
T10939 |
conj |
perfused,isolated |
R3048 |
T10950 |
T10949 |
prep |
with,perfused |
R3049 |
T10951 |
T10952 |
nummod |
4,% |
R3050 |
T10952 |
T10953 |
compound |
%,paraformaldehyde |
R3051 |
T10953 |
T10950 |
pobj |
paraformaldehyde,with |
R3052 |
T10954 |
T10953 |
prep |
in,paraformaldehyde |
R3053 |
T10955 |
T10954 |
pobj |
PBS,in |
R3054 |
T10956 |
T10949 |
punct |
", ",perfused |
R3055 |
T10957 |
T10949 |
cc |
and,perfused |
R3056 |
T10958 |
T10949 |
conj |
post-fixed,perfused |
R3057 |
T10959 |
T10958 |
advmod |
overnight,post-fixed |
R3058 |
T10960 |
T10958 |
prep |
in,post-fixed |
R3059 |
T10961 |
T10962 |
det |
the,fixative |
R3060 |
T10962 |
T10960 |
pobj |
fixative,in |
R3061 |
T10963 |
T10962 |
amod |
same,fixative |
R3062 |
T10964 |
T10939 |
punct |
.,isolated |
R3063 |
T10966 |
T10967 |
nsubjpass |
Brains,embedded |
R3064 |
T10968 |
T10967 |
auxpass |
were,embedded |
R3065 |
T10969 |
T10967 |
prep |
in,embedded |
R3066 |
T10970 |
T10969 |
pobj |
gelatin,in |
R3067 |
T10971 |
T10967 |
punct |
", ",embedded |
R3068 |
T10972 |
T10967 |
cc |
and,embedded |
R3069 |
T10973 |
T10974 |
nummod |
35,μm |
R3070 |
T10974 |
T10976 |
nmod |
μm,sections |
R3071 |
T10975 |
T10974 |
punct |
-,μm |
R3072 |
T10976 |
T10978 |
nsubjpass |
sections,cut |
R3073 |
T10977 |
T10976 |
amod |
sagittal,sections |
R3074 |
T10978 |
T10967 |
conj |
cut,embedded |
R3075 |
T10979 |
T10978 |
auxpass |
were,cut |
R3076 |
T10980 |
T10978 |
advcl |
using,cut |
R3077 |
T10981 |
T10982 |
det |
a,microtome |
R3078 |
T10982 |
T10980 |
dobj |
microtome,using |
R3079 |
T10983 |
T10982 |
amod |
sliding,microtome |
R3080 |
T10984 |
T10985 |
punct |
(,Associates |
R3081 |
T10985 |
T10982 |
parataxis |
Associates,microtome |
R3082 |
T10986 |
T10985 |
compound |
NeuroScience,Associates |
R3083 |
T10987 |
T10985 |
punct |
", ",Associates |
R3084 |
T10988 |
T10985 |
npadvmod |
http://www.neuroscienceassociates.com,Associates |
R3085 |
T10989 |
T10985 |
punct |
),Associates |
R3086 |
T10990 |
T10978 |
punct |
.,cut |
R3087 |
T10992 |
T10993 |
nsubjpass |
Sections,placed |
R3088 |
T10994 |
T10992 |
prep |
from,Sections |
R3089 |
T10995 |
T10996 |
amod |
wild,type |
R3090 |
T10996 |
T10998 |
nmod |
type,brains |
R3091 |
T10997 |
T10996 |
punct |
-,type |
R3092 |
T10998 |
T10994 |
pobj |
brains,from |
R3093 |
T10999 |
T10996 |
punct |
", ",type |
R3094 |
T11000 |
T10996 |
conj |
heterozygote,type |
R3095 |
T11001 |
T11000 |
punct |
", ",heterozygote |
R3096 |
T11002 |
T11000 |
cc |
and,heterozygote |
R3097 |
T11003 |
T11000 |
conj |
homozygous,heterozygote |
R3098 |
T11004 |
T10993 |
auxpass |
were,placed |
R3099 |
T11005 |
T10993 |
prep |
in,placed |
R3100 |
T11006 |
T11007 |
det |
the,template |
R3101 |
T11007 |
T11005 |
pobj |
template,in |
R3102 |
T11008 |
T11007 |
compound |
MultiBrain,template |
R3103 |
T11009 |
T10993 |
punct |
.,placed |
R3104 |
T11011 |
T11012 |
nsubjpass |
Sections,washed |
R3105 |
T11013 |
T11012 |
auxpass |
were,washed |
R3106 |
T11014 |
T11012 |
prep |
in,washed |
R3107 |
T11015 |
T11016 |
nummod |
1,PBS |
R3108 |
T11016 |
T11014 |
pobj |
PBS,in |
R3109 |
T11017 |
T11015 |
punct |
×,1 |
R3110 |
T11018 |
T11019 |
advmod |
prior,to |
R3111 |
T11019 |
T11012 |
prep |
to,washed |
R3112 |
T11020 |
T11021 |
nummod |
1,h |
R3113 |
T11021 |
T11019 |
pobj |
h,to |
R3114 |
T11022 |
T11021 |
prep |
of,h |
R3115 |
T11023 |
T11022 |
pobj |
incubation,of |
R3116 |
T11024 |
T11023 |
prep |
in,incubation |
R3117 |
T11025 |
T11026 |
compound |
block,solution |
R3118 |
T11026 |
T11024 |
pobj |
solution,in |
R3119 |
T11027 |
T11026 |
acl |
containing,solution |
R3120 |
T11028 |
T11029 |
nummod |
1,PBS |
R3121 |
T11029 |
T11027 |
dobj |
PBS,containing |
R3122 |
T11030 |
T11028 |
punct |
×,1 |
R3123 |
T11031 |
T11029 |
prep |
with,PBS |
R3124 |
T11032 |
T11033 |
nummod |
20,% |
R3125 |
T11033 |
T11034 |
nmod |
%,serum |
R3126 |
T11034 |
T11031 |
pobj |
serum,with |
R3127 |
T11035 |
T11034 |
amod |
normal,serum |
R3128 |
T11036 |
T11034 |
compound |
goat,serum |
R3129 |
T11037 |
T11034 |
cc |
and,serum |
R3130 |
T11038 |
T11039 |
nummod |
0.3,% |
R3131 |
T11039 |
T11040 |
compound |
%,X |
R3132 |
T11040 |
T11034 |
conj |
X,serum |
R3133 |
T11041 |
T11040 |
compound |
Triton,X |
R3134 |
T11042 |
T11040 |
punct |
-,X |
R3135 |
T11043 |
T11040 |
nummod |
100,X |
R3136 |
T11044 |
T11045 |
punct |
(,pH |
R3137 |
T11045 |
T11040 |
parataxis |
pH,X |
R3138 |
T11046 |
T11045 |
nummod |
7.4,pH |
R3139 |
T11047 |
T11045 |
punct |
),pH |
R3140 |
T11048 |
T11012 |
punct |
.,washed |
R3141 |
T11050 |
T11051 |
nsubjpass |
Sections,incubated |
R3142 |
T11052 |
T11051 |
auxpass |
were,incubated |
R3143 |
T11053 |
T11051 |
advmod |
overnight,incubated |
R3144 |
T11054 |
T11051 |
prep |
at,incubated |
R3145 |
T11055 |
T11056 |
nummod |
4,°C |
R3146 |
T11056 |
T11054 |
pobj |
°C,at |
R3147 |
T11057 |
T11051 |
prep |
in,incubated |
R3148 |
T11058 |
T11059 |
amod |
primary,antibodies |
R3149 |
T11059 |
T11057 |
pobj |
antibodies,in |
R3150 |
T11060 |
T11059 |
punct |
: ,antibodies |
R3151 |
T11061 |
T11062 |
nmod |
affinity,antibody |
R3152 |
T11062 |
T11059 |
appos |
antibody,antibodies |
R3153 |
T11063 |
T11062 |
amod |
purified,antibody |
R3154 |
T11064 |
T11062 |
amod |
polyclonal,antibody |
R3155 |
T11065 |
T11062 |
compound |
Itpr1,antibody |
R3156 |
T11066 |
T11067 |
punct |
(,International |
R3157 |
T11067 |
T11062 |
parataxis |
International,antibody |
R3158 |
T11068 |
T11067 |
dep |
1,International |
R3159 |
T11069 |
T11070 |
punct |
:,"2,000" |
R3160 |
T11070 |
T11068 |
prep |
"2,000",1 |
R3161 |
T11071 |
T11067 |
punct |
", ",International |
R3162 |
T11072 |
T11067 |
compound |
Chemicon,International |
R3163 |
T11073 |
T11067 |
punct |
", ",International |
R3164 |
T11074 |
T11067 |
npadvmod |
http://www.chemicon.com,International |
R3165 |
T11075 |
T11067 |
punct |
),International |
R3166 |
T11076 |
T11062 |
cc |
and,antibody |
R3167 |
T11077 |
T11078 |
amod |
monoclonal,antibody |
R3168 |
T11078 |
T11062 |
conj |
antibody,antibody |
R3169 |
T11079 |
T11078 |
amod |
anti-Calb1,antibody |
R3170 |
T11080 |
T11081 |
punct |
(,Aldrich |
R3171 |
T11081 |
T11078 |
parataxis |
Aldrich,antibody |
R3172 |
T11082 |
T11081 |
dep |
1,Aldrich |
R3173 |
T11083 |
T11084 |
punct |
:,"6,000" |
R3174 |
T11084 |
T11082 |
prep |
"6,000",1 |
R3175 |
T11085 |
T11081 |
punct |
", ",Aldrich |
R3176 |
T11086 |
T11081 |
compound |
Sigma,Aldrich |
R3177 |
T11087 |
T11081 |
punct |
-,Aldrich |
R3178 |
T11088 |
T11081 |
punct |
", ",Aldrich |
R3179 |
T11089 |
T11081 |
npadvmod |
http://www.sigmaaldrich.com,Aldrich |
R3180 |
T11090 |
T11081 |
punct |
),Aldrich |
R3181 |
T11091 |
T11062 |
acl |
diluted,antibody |
R3182 |
T11092 |
T11091 |
prep |
in,diluted |
R3183 |
T11093 |
T11094 |
compound |
carrier,solution |
R3184 |
T11094 |
T11092 |
pobj |
solution,in |
R3185 |
T11095 |
T11051 |
punct |
.,incubated |
R3186 |
T11097 |
T11098 |
prep |
Following,incubated |
R3187 |
T11099 |
T11100 |
amod |
extensive,washes |
R3188 |
T11100 |
T11097 |
pobj |
washes,Following |
R3189 |
T11101 |
T11100 |
punct |
(,washes |
R3190 |
T11102 |
T11100 |
prep |
in,washes |
R3191 |
T11103 |
T11104 |
nummod |
6.0,ml |
R3192 |
T11104 |
T11102 |
pobj |
ml,in |
R3193 |
T11105 |
T11104 |
prep |
of,ml |
R3194 |
T11106 |
T11105 |
pobj |
PBS,of |
R3195 |
T11107 |
T11108 |
punct |
", ",times |
R3196 |
T11108 |
T11100 |
parataxis |
times,washes |
R3197 |
T11109 |
T11108 |
nummod |
three,times |
R3198 |
T11110 |
T11108 |
punct |
),times |
R3199 |
T11111 |
T11098 |
punct |
", ",incubated |
R3200 |
T11112 |
T11098 |
nsubjpass |
sections,incubated |
R3201 |
T11113 |
T11098 |
auxpass |
were,incubated |
R3202 |
T11114 |
T11098 |
prep |
with,incubated |
R3203 |
T11115 |
T11116 |
amod |
appropriate,antibodies |
R3204 |
T11116 |
T11114 |
pobj |
antibodies,with |
R3205 |
T11117 |
T11116 |
amod |
secondary,antibodies |
R3206 |
T11118 |
T11119 |
punct |
(,IgG |
R3207 |
T11119 |
T11116 |
parataxis |
IgG,antibodies |
R3208 |
T11120 |
T11121 |
nmod |
Alexa,Fluor |
R3209 |
T11121 |
T11119 |
nmod |
Fluor,IgG |
R3210 |
T11122 |
T11121 |
nummod |
555,Fluor |
R3211 |
T11123 |
T11119 |
nmod |
goat,IgG |
R3212 |
T11124 |
T11119 |
amod |
anti-rabbit,IgG |
R3213 |
T11125 |
T11119 |
cc |
and,IgG |
R3214 |
T11126 |
T11127 |
nmod |
Alexa,Fluor |
R3215 |
T11127 |
T11128 |
nmod |
Fluor,IgG |
R3216 |
T11128 |
T11119 |
conj |
IgG,IgG |
R3217 |
T11129 |
T11127 |
nummod |
488,Fluor |
R3218 |
T11130 |
T11128 |
nmod |
goat,IgG |
R3219 |
T11131 |
T11128 |
amod |
anti-mouse,IgG |
R3220 |
T11132 |
T11133 |
punct |
[,Invitrogen |
R3221 |
T11133 |
T11128 |
parataxis |
Invitrogen,IgG |
R3222 |
T11134 |
T11133 |
punct |
", ",Invitrogen |
R3223 |
T11135 |
T11133 |
npadvmod |
http://www.invitrogen.com,Invitrogen |
R3224 |
T11136 |
T11133 |
punct |
],Invitrogen |
R3225 |
T11137 |
T11119 |
punct |
),IgG |
R3226 |
T11138 |
T11098 |
prep |
for,incubated |
R3227 |
T11139 |
T11140 |
nummod |
1,h |
R3228 |
T11140 |
T11138 |
pobj |
h,for |
R3229 |
T11141 |
T11098 |
prep |
at,incubated |
R3230 |
T11142 |
T11143 |
compound |
room,temperature |
R3231 |
T11143 |
T11141 |
pobj |
temperature,at |
R3232 |
T11144 |
T11098 |
punct |
.,incubated |
R3233 |
T11146 |
T11147 |
nsubjpass |
Sections,washed |
R3234 |
T11148 |
T11147 |
auxpass |
were,washed |
R3235 |
T11149 |
T11147 |
cc |
and,washed |
R3236 |
T11150 |
T11147 |
conj |
mounted,washed |
R3237 |
T11151 |
T11150 |
prep |
on,mounted |
R3238 |
T11152 |
T11153 |
compound |
glass,slides |
R3239 |
T11153 |
T11151 |
pobj |
slides,on |
R3240 |
T11154 |
T11150 |
prep |
in,mounted |
R3241 |
T11155 |
T11156 |
det |
a,medium |
R3242 |
T11156 |
T11154 |
pobj |
medium,in |
R3243 |
T11157 |
T11156 |
amod |
buffered,medium |
R3244 |
T11158 |
T11156 |
acl |
containing,medium |
R3245 |
T11159 |
T11158 |
dobj |
Mowiol,containing |
R3246 |
T11160 |
T11161 |
punct |
(,Calbiochem |
R3247 |
T11161 |
T11159 |
parataxis |
Calbiochem,Mowiol |
R3248 |
T11162 |
T11161 |
punct |
", ",Calbiochem |
R3249 |
T11163 |
T11161 |
npadvmod |
http://www.emdbiosciences.com,Calbiochem |
R3250 |
T11164 |
T11161 |
punct |
),Calbiochem |
R3251 |
T11165 |
T11166 |
mark |
as,described |
R3252 |
T11166 |
T11150 |
advcl |
described,mounted |
R3253 |
T11167 |
T11166 |
advmod |
earlier,described |
R3254 |
T11168 |
T11169 |
punct |
[,14 |
R3255 |
T11169 |
T11150 |
parataxis |
14,mounted |
R3256 |
T11170 |
T11169 |
punct |
],14 |
R3257 |
T11171 |
T11147 |
punct |
.,washed |
R3258 |
T11173 |
T11174 |
nsubjpass |
Sections,imaged |
R3259 |
T11175 |
T11174 |
auxpass |
were,imaged |
R3260 |
T11176 |
T11174 |
advcl |
using,imaged |
R3261 |
T11177 |
T11178 |
det |
a,microscope |
R3262 |
T11178 |
T11176 |
dobj |
microscope,using |
R3263 |
T11179 |
T11178 |
nmod |
laser,microscope |
R3264 |
T11180 |
T11178 |
amod |
scanning,microscope |
R3265 |
T11181 |
T11178 |
amod |
confocal,microscope |
R3266 |
T11182 |
T11183 |
punct |
(,Zeiss |
R3267 |
T11183 |
T11178 |
parataxis |
Zeiss,microscope |
R3268 |
T11184 |
T11183 |
dep |
LSM,Zeiss |
R3269 |
T11185 |
T11184 |
nummod |
510,LSM |
R3270 |
T11186 |
T11183 |
punct |
;,Zeiss |
R3271 |
T11187 |
T11183 |
punct |
", ",Zeiss |
R3272 |
T11188 |
T11183 |
npadvmod |
http://www.zeiss.com,Zeiss |
R3273 |
T11189 |
T11183 |
punct |
),Zeiss |
R3274 |
T11190 |
T11174 |
punct |
.,imaged |
R3275 |
T11192 |
T11193 |
compound |
Imaging,parameters |
R3276 |
T11193 |
T11194 |
nsubjpass |
parameters,optimized |
R3277 |
T11195 |
T11196 |
punct |
(,pinhole |
R3278 |
T11196 |
T11193 |
parataxis |
pinhole,parameters |
R3279 |
T11197 |
T11196 |
punct |
", ",pinhole |
R3280 |
T11198 |
T11199 |
compound |
detector,gain |
R3281 |
T11199 |
T11196 |
appos |
gain,pinhole |
R3282 |
T11200 |
T11196 |
punct |
", ",pinhole |
R3283 |
T11201 |
T11202 |
compound |
laser,power |
R3284 |
T11202 |
T11196 |
appos |
power,pinhole |
R3285 |
T11203 |
T11196 |
punct |
),pinhole |
R3286 |
T11204 |
T11194 |
auxpass |
were,optimized |
R3287 |
T11205 |
T11194 |
punct |
", ",optimized |
R3288 |
T11206 |
T11194 |
cc |
and,optimized |
R3289 |
T11207 |
T11208 |
auxpass |
were,kept |
R3290 |
T11208 |
T11194 |
conj |
kept,optimized |
R3291 |
T11209 |
T11208 |
oprd |
constant,kept |
R3292 |
T11210 |
T11208 |
prep |
for,kept |
R3293 |
T11211 |
T11212 |
det |
the,brains |
R3294 |
T11212 |
T11210 |
pobj |
brains,for |
R3295 |
T11213 |
T11214 |
amod |
wild,type |
R3296 |
T11214 |
T11212 |
nmod |
type,brains |
R3297 |
T11215 |
T11214 |
punct |
-,type |
R3298 |
T11216 |
T11214 |
punct |
", ",type |
R3299 |
T11217 |
T11214 |
conj |
heterozygous,type |
R3300 |
T11218 |
T11217 |
punct |
", ",heterozygous |
R3301 |
T11219 |
T11217 |
cc |
and,heterozygous |
R3302 |
T11220 |
T11217 |
conj |
homozygous,heterozygous |
R3303 |
T11221 |
T11212 |
compound |
mutant,brains |
R3304 |
T11222 |
T11194 |
punct |
.,optimized |
R3305 |
T11224 |
T11225 |
nsubjpass |
Specificity,verified |
R3306 |
T11226 |
T11224 |
prep |
of,Specificity |
R3307 |
T11227 |
T11228 |
det |
the,antibodies |
R3308 |
T11228 |
T11226 |
pobj |
antibodies,of |
R3309 |
T11229 |
T11228 |
compound |
Itpr1,antibodies |
R3310 |
T11230 |
T11225 |
auxpass |
was,verified |
R3311 |
T11231 |
T11225 |
prep |
by,verified |
R3312 |
T11232 |
T11233 |
compound |
preabsorption,experiments |
R3313 |
T11233 |
T11231 |
pobj |
experiments,by |
R3314 |
T11234 |
T11233 |
compound |
control,experiments |
R3315 |
T11235 |
T11225 |
punct |
.,verified |
R3316 |
T11237 |
T11238 |
compound |
Antibody,dilutions |
R3317 |
T11238 |
T11239 |
nsubjpass |
dilutions,incubated |
R3318 |
T11240 |
T11239 |
auxpass |
were,incubated |
R3319 |
T11241 |
T11239 |
prep |
for,incubated |
R3320 |
T11242 |
T11243 |
nummod |
24,h |
R3321 |
T11243 |
T11241 |
pobj |
h,for |
R3322 |
T11244 |
T11239 |
prep |
at,incubated |
R3323 |
T11245 |
T11246 |
nummod |
4,°C |
R3324 |
T11246 |
T11244 |
pobj |
°C,at |
R3325 |
T11247 |
T11239 |
prep |
with,incubated |
R3326 |
T11248 |
T11249 |
det |
the,peptide |
R3327 |
T11249 |
T11247 |
pobj |
peptide,with |
R3328 |
T11250 |
T11249 |
amod |
immunizing,peptide |
R3329 |
T11251 |
T11239 |
punct |
.,incubated |
R3330 |
T11253 |
T11254 |
compound |
Tissue,sections |
R3331 |
T11254 |
T11255 |
nsubjpass |
sections,incubated |
R3332 |
T11256 |
T11255 |
auxpass |
were,incubated |
R3333 |
T11257 |
T11255 |
prep |
with,incubated |
R3334 |
T11258 |
T11259 |
det |
the,antibodies |
R3335 |
T11259 |
T11257 |
pobj |
antibodies,with |
R3336 |
T11260 |
T11259 |
amod |
preabsorbed,antibodies |
R3337 |
T11261 |
T11255 |
cc |
and,incubated |
R3338 |
T11262 |
T11255 |
conj |
processed,incubated |
R3339 |
T11263 |
T11264 |
mark |
as,described |
R3340 |
T11264 |
T11262 |
advcl |
described,processed |
R3341 |
T11265 |
T11264 |
advmod |
above,described |
R3342 |
T11266 |
T11255 |
punct |
.,incubated |
R3343 |
T11268 |
T11269 |
prep |
Under,detected |
R3344 |
T11270 |
T11271 |
det |
these,conditions |
R3345 |
T11271 |
T11268 |
pobj |
conditions,Under |
R3346 |
T11272 |
T11269 |
punct |
", ",detected |
R3347 |
T11273 |
T11274 |
det |
no,staining |
R3348 |
T11274 |
T11269 |
nsubjpass |
staining,detected |
R3349 |
T11275 |
T11274 |
prep |
above,staining |
R3350 |
T11276 |
T11275 |
pobj |
autofluorescence,above |
R3351 |
T11277 |
T11269 |
auxpass |
was,detected |
R3352 |
T11278 |
T11269 |
punct |
.,detected |