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PMC:1860061 / 9692-10334 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE Lectin_function

Id Subject Object Predicate Lexical cue
T5731 0-12 JJ denotes Hierarchical
T5733 13-17 NN denotes gene
T5732 18-28 NN denotes clustering
T5735 29-32 VBD denotes was
T5734 33-42 VBN denotes performed
T5736 43-47 IN denotes with
T5737 48-53 NN denotes dCHIP
T5738 54-56 TO denotes to
T5739 57-69 VB denotes characterise
T5740 70-73 DT denotes the
T5742 74-78 NN denotes gene
T5743 79-89 NN denotes expression
T5741 90-98 NNS denotes patterns
T5744 99-105 IN denotes during
T5745 106-109 NN denotes CIA
T5746 109-110 . denotes .
T5747 110-352 sentence denotes The default clustering algorithm of genes was as follows: the distance between two genes is defined as 1 – r, where r is the Pearson correlation coefficient between the standardised expression values of the two genes across the samples used.
T5748 111-114 DT denotes The
T5750 115-122 NN denotes default
T5751 123-133 NN denotes clustering
T5749 134-143 NN denotes algorithm
T5753 144-146 IN denotes of
T5754 147-152 NNS denotes genes
T5752 153-156 VBD denotes was
T5756 157-159 IN denotes as
T5757 160-167 VBZ denotes follows
T5758 167-169 : denotes :
T5759 169-172 DT denotes the
T5760 173-181 NN denotes distance
T5761 182-189 IN denotes between
T5762 190-193 CD denotes two
T5763 194-199 NNS denotes genes
T5764 200-202 VBZ denotes is
T5755 203-210 VBN denotes defined
T5765 211-213 IN denotes as
T5766 214-215 CD denotes 1
T5768 216-217 HYPH denotes –
T5767 218-219 NN denotes r
T5769 219-221 , denotes ,
T5770 221-226 WRB denotes where
T5772 227-228 NN denotes r
T5771 229-231 VBZ denotes is
T5773 232-235 DT denotes the
T5775 236-243 NNP denotes Pearson
T5776 244-255 NN denotes correlation
T5774 256-267 NN denotes coefficient
T5777 268-275 IN denotes between
T5778 276-279 DT denotes the
T5780 280-292 VBN denotes standardised
T5781 293-303 NN denotes expression
T5779 304-310 NNS denotes values
T5782 311-313 IN denotes of
T5783 314-317 DT denotes the
T5785 318-321 CD denotes two
T5784 322-327 NNS denotes genes
T5786 328-334 IN denotes across
T5787 335-338 DT denotes the
T5788 339-346 NNS denotes samples
T5789 347-351 VBN denotes used
T5790 351-352 . denotes .
T5791 352-524 sentence denotes To characterise the functional relationship between differentially expressed genes, Gene Ontology (GO) term classification incorporated in DNA-Chip Analyzer was performed.
T5792 353-355 TO denotes To
T5793 356-368 VB denotes characterise
T5795 369-372 DT denotes the
T5797 373-383 JJ denotes functional
T5796 384-396 NN denotes relationship
T5798 397-404 IN denotes between
T5799 405-419 RB denotes differentially
T5801 420-429 VBN denotes expressed
T5800 430-435 NNS denotes genes
T5802 435-437 , denotes ,
T5803 437-441 NN denotes Gene
T5804 442-450 NN denotes Ontology
T5806 451-452 -LRB- denotes (
T5807 452-454 NN denotes GO
T5808 454-455 -RRB- denotes )
T5809 456-460 NN denotes term
T5805 461-475 NN denotes classification
T5810 476-488 VBN denotes incorporated
T5811 489-491 IN denotes in
T5812 492-495 NNP denotes DNA
T5814 495-496 HYPH denotes -
T5813 496-500 NNP denotes Chip
T5815 501-509 NNP denotes Analyzer
T5816 510-513 VBD denotes was
T5794 514-523 VBN denotes performed
T5817 523-524 . denotes .
T5818 524-642 sentence denotes The significant level for a function cluster was set at P < 0.005, and the minimum size of a cluster was three genes.
T5819 525-528 DT denotes The
T5821 529-540 JJ denotes significant
T5820 541-546 NN denotes level
T5823 547-550 IN denotes for
T5824 551-552 DT denotes a
T5826 553-561 NN denotes function
T5825 562-569 NN denotes cluster
T5827 570-573 VBD denotes was
T5822 574-577 VBN denotes set
T5828 578-580 IN denotes at
T5829 581-582 NN denotes P
T5830 583-584 SYM denotes <
T5831 585-590 CD denotes 0.005
T5832 590-592 , denotes ,
T5833 592-595 CC denotes and
T5834 596-599 DT denotes the
T5836 600-607 JJ denotes minimum
T5835 608-612 NN denotes size
T5838 613-615 IN denotes of
T5839 616-617 DT denotes a
T5840 618-625 NN denotes cluster
T5837 626-629 VBD denotes was
T5841 630-635 CD denotes three
T5842 636-641 NNS denotes genes
T5843 641-642 . denotes .
R1714 T5731 T5732 amod Hierarchical,clustering
R1715 T5732 T5734 nsubjpass clustering,performed
R1716 T5733 T5732 compound gene,clustering
R1717 T5735 T5734 auxpass was,performed
R1718 T5736 T5734 prep with,performed
R1719 T5737 T5736 pobj dCHIP,with
R1720 T5738 T5739 aux to,characterise
R1721 T5739 T5734 advcl characterise,performed
R1722 T5740 T5741 det the,patterns
R1723 T5741 T5739 dobj patterns,characterise
R1724 T5742 T5743 compound gene,expression
R1725 T5743 T5741 compound expression,patterns
R1726 T5744 T5741 prep during,patterns
R1727 T5745 T5744 pobj CIA,during
R1728 T5746 T5734 punct .,performed
R1729 T5748 T5749 det The,algorithm
R1730 T5749 T5752 nsubj algorithm,was
R1731 T5750 T5749 compound default,algorithm
R1732 T5751 T5749 compound clustering,algorithm
R1733 T5752 T5755 ccomp was,defined
R1734 T5753 T5749 prep of,algorithm
R1735 T5754 T5753 pobj genes,of
R1736 T5756 T5757 mark as,follows
R1737 T5757 T5752 advcl follows,was
R1738 T5758 T5755 punct : ,defined
R1739 T5759 T5760 det the,distance
R1740 T5760 T5755 nsubjpass distance,defined
R1741 T5761 T5760 prep between,distance
R1742 T5762 T5763 nummod two,genes
R1743 T5763 T5761 pobj genes,between
R1744 T5764 T5755 auxpass is,defined
R1745 T5765 T5755 prep as,defined
R1746 T5766 T5767 nummod 1,r
R1747 T5767 T5765 pobj r,as
R1748 T5768 T5767 punct –,r
R1749 T5769 T5767 punct ", ",r
R1750 T5770 T5771 advmod where,is
R1751 T5771 T5767 relcl is,r
R1752 T5772 T5771 nsubj r,is
R1753 T5773 T5774 det the,coefficient
R1754 T5774 T5771 attr coefficient,is
R1755 T5775 T5774 compound Pearson,coefficient
R1756 T5776 T5774 compound correlation,coefficient
R1757 T5777 T5774 prep between,coefficient
R1758 T5778 T5779 det the,values
R1759 T5779 T5777 pobj values,between
R1760 T5780 T5779 amod standardised,values
R1761 T5781 T5779 compound expression,values
R1762 T5782 T5779 prep of,values
R1763 T5783 T5784 det the,genes
R1764 T5784 T5782 pobj genes,of
R1765 T5785 T5784 nummod two,genes
R1766 T5786 T5784 prep across,genes
R1767 T5787 T5788 det the,samples
R1768 T5788 T5786 pobj samples,across
R1769 T5789 T5788 acl used,samples
R1770 T5790 T5755 punct .,defined
R1771 T5792 T5793 aux To,characterise
R1772 T5793 T5794 advcl characterise,performed
R1773 T5795 T5796 det the,relationship
R1774 T5796 T5793 dobj relationship,characterise
R1775 T5797 T5796 amod functional,relationship
R1776 T5798 T5796 prep between,relationship
R1777 T5799 T5800 advmod differentially,genes
R1778 T5800 T5798 pobj genes,between
R1779 T5801 T5800 amod expressed,genes
R1780 T5802 T5794 punct ", ",performed
R1781 T5803 T5804 nmod Gene,Ontology
R1782 T5804 T5805 nmod Ontology,classification
R1783 T5805 T5794 nsubjpass classification,performed
R1784 T5806 T5804 punct (,Ontology
R1785 T5807 T5804 appos GO,Ontology
R1786 T5808 T5805 punct ),classification
R1787 T5809 T5805 compound term,classification
R1788 T5810 T5805 acl incorporated,classification
R1789 T5811 T5810 prep in,incorporated
R1790 T5812 T5813 compound DNA,Chip
R1791 T5813 T5815 compound Chip,Analyzer
R1792 T5814 T5813 punct -,Chip
R1793 T5815 T5811 pobj Analyzer,in
R1794 T5816 T5794 auxpass was,performed
R1795 T5817 T5794 punct .,performed
R1796 T5819 T5820 det The,level
R1797 T5820 T5822 nsubjpass level,set
R1798 T5821 T5820 amod significant,level
R1799 T5823 T5820 prep for,level
R1800 T5824 T5825 det a,cluster
R1801 T5825 T5823 pobj cluster,for
R1802 T5826 T5825 compound function,cluster
R1803 T5827 T5822 auxpass was,set
R1804 T5828 T5822 prep at,set
R1805 T5829 T5828 pobj P,at
R1806 T5830 T5831 punct <,0.005
R1807 T5831 T5829 amod 0.005,P
R1808 T5832 T5822 punct ", ",set
R1809 T5833 T5822 cc and,set
R1810 T5834 T5835 det the,size
R1811 T5835 T5837 nsubj size,was
R1812 T5836 T5835 amod minimum,size
R1813 T5837 T5822 conj was,set
R1814 T5838 T5835 prep of,size
R1815 T5839 T5840 det a,cluster
R1816 T5840 T5838 pobj cluster,of
R1817 T5841 T5842 nummod three,genes
R1818 T5842 T5837 attr genes,was
R1819 T5843 T5837 punct .,was