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PMC:1860061 / 23861-24788 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T14430 0-9 RB denotes Therefore
T14432 9-11 , denotes ,
T14433 11-13 PRP denotes we
T14434 14-18 VBP denotes have
T14431 19-28 VBN denotes presented
T14435 29-30 DT denotes a
T14436 31-39 NN denotes strategy
T14437 40-42 TO denotes to
T14438 43-51 VB denotes identify
T14439 52-57 JJ denotes small
T14441 57-58 HYPH denotes -
T14440 58-64 NN denotes effect
T14442 65-68 NNS denotes QTL
T14443 69-72 CC denotes and
T14444 73-79 VB denotes search
T14445 80-83 IN denotes for
T14446 84-93 JJ denotes potential
T14448 94-103 NN denotes candidate
T14447 104-109 NNS denotes genes
T14449 110-116 IN denotes within
T14450 117-121 PRP denotes them
T14451 121-122 . denotes .
T14452 122-264 sentence denotes However, it is noteworthy that the low statistical threshold and small number of animals per group could lead to some false positive results.
T14453 123-130 RB denotes However
T14455 130-132 , denotes ,
T14456 132-134 PRP denotes it
T14454 135-137 VBZ denotes is
T14457 138-148 JJ denotes noteworthy
T14458 149-153 IN denotes that
T14460 154-157 DT denotes the
T14462 158-161 JJ denotes low
T14463 162-173 JJ denotes statistical
T14461 174-183 NN denotes threshold
T14464 184-187 CC denotes and
T14465 188-193 JJ denotes small
T14466 194-200 NN denotes number
T14467 201-203 IN denotes of
T14468 204-211 NNS denotes animals
T14469 212-215 IN denotes per
T14470 216-221 NN denotes group
T14471 222-227 MD denotes could
T14459 228-232 VB denotes lead
T14472 233-235 IN denotes to
T14473 236-240 DT denotes some
T14475 241-246 JJ denotes false
T14476 247-255 JJ denotes positive
T14474 256-263 NNS denotes results
T14477 263-264 . denotes .
T14478 264-401 sentence denotes On the genome level, some of the eight small-effect QTL identified using a very low threshold value (P < 0.05) could be false positives.
T14479 265-267 IN denotes On
T14481 268-271 DT denotes the
T14483 272-278 NN denotes genome
T14482 279-284 NN denotes level
T14484 284-286 , denotes ,
T14485 286-290 DT denotes some
T14486 291-293 IN denotes of
T14487 294-297 DT denotes the
T14489 298-303 CD denotes eight
T14490 304-309 JJ denotes small
T14492 309-310 HYPH denotes -
T14491 310-316 NN denotes effect
T14488 317-320 NNS denotes QTL
T14493 321-331 VBN denotes identified
T14494 332-337 VBG denotes using
T14495 338-339 DT denotes a
T14497 340-344 RB denotes very
T14498 345-348 JJ denotes low
T14499 349-358 NN denotes threshold
T14496 359-364 NN denotes value
T14500 365-366 -LRB- denotes (
T14502 366-367 NN denotes P
T14503 368-369 SYM denotes <
T14501 370-374 CD denotes 0.05
T14504 374-375 -RRB- denotes )
T14505 376-381 MD denotes could
T14480 382-384 VB denotes be
T14506 385-390 JJ denotes false
T14507 391-400 NNS denotes positives
T14508 400-401 . denotes .
T14509 401-523 sentence denotes For example, locus 4 was identified with a low P value and does not overlap with any previously identified arthritis QTL.
T14510 402-405 IN denotes For
T14512 406-413 NN denotes example
T14513 413-415 , denotes ,
T14514 415-420 NN denotes locus
T14515 421-422 CD denotes 4
T14516 423-426 VBD denotes was
T14511 427-437 VBN denotes identified
T14517 438-442 IN denotes with
T14518 443-444 DT denotes a
T14520 445-448 JJ denotes low
T14521 449-450 NN denotes P
T14519 451-456 NN denotes value
T14522 457-460 CC denotes and
T14523 461-465 VBZ denotes does
T14525 466-469 RB denotes not
T14524 470-477 VB denotes overlap
T14526 478-482 IN denotes with
T14527 483-486 DT denotes any
T14529 487-497 RB denotes previously
T14530 498-508 VBN denotes identified
T14531 509-518 NN denotes arthritis
T14528 519-522 NNS denotes QTL
T14532 522-523 . denotes .
T14533 523-718 sentence denotes On the transcriptome level, the small number of animals per group and the low threshold used to detect gene expression could also result in false positives in the differentially expressed genes.
T14534 524-526 IN denotes On
T14536 527-530 DT denotes the
T14538 531-544 NN denotes transcriptome
T14537 545-550 NN denotes level
T14539 550-552 , denotes ,
T14540 552-555 DT denotes the
T14542 556-561 JJ denotes small
T14541 562-568 NN denotes number
T14543 569-571 IN denotes of
T14544 572-579 NNS denotes animals
T14545 580-583 IN denotes per
T14546 584-589 NN denotes group
T14547 590-593 CC denotes and
T14548 594-597 DT denotes the
T14550 598-601 JJ denotes low
T14549 602-611 NN denotes threshold
T14551 612-616 VBN denotes used
T14552 617-619 TO denotes to
T14553 620-626 VB denotes detect
T14554 627-631 NN denotes gene
T14555 632-642 NN denotes expression
T14556 643-648 MD denotes could
T14557 649-653 RB denotes also
T14535 654-660 VB denotes result
T14558 661-663 IN denotes in
T14559 664-669 JJ denotes false
T14560 670-679 NNS denotes positives
T14561 680-682 IN denotes in
T14562 683-686 DT denotes the
T14564 687-701 RB denotes differentially
T14565 702-711 VBN denotes expressed
T14563 712-717 NNS denotes genes
T14566 717-718 . denotes .
T14567 718-864 sentence denotes Furthermore, the differential expression of a gene could result not only from allele difference between two strains, but also from other factors.
T14568 719-730 RB denotes Furthermore
T14570 730-732 , denotes ,
T14571 732-735 DT denotes the
T14573 736-748 JJ denotes differential
T14572 749-759 NN denotes expression
T14574 760-762 IN denotes of
T14575 763-764 DT denotes a
T14576 765-769 NN denotes gene
T14577 770-775 MD denotes could
T14569 776-782 VB denotes result
T14578 783-786 RB denotes not
T14580 787-791 RB denotes only
T14579 792-796 IN denotes from
T14581 797-803 NN denotes allele
T14582 804-814 NN denotes difference
T14583 815-822 IN denotes between
T14584 823-826 CD denotes two
T14585 827-834 NNS denotes strains
T14586 834-836 , denotes ,
T14587 836-839 CC denotes but
T14588 840-844 RB denotes also
T14589 845-849 IN denotes from
T14590 850-855 JJ denotes other
T14591 856-863 NNS denotes factors
T14592 863-864 . denotes .
T14593 864-927 sentence denotes Therefore, our findings should be confirmed in future studies.
T14594 865-874 RB denotes Therefore
T14596 874-876 , denotes ,
T14597 876-879 PRP$ denotes our
T14598 880-888 NNS denotes findings
T14599 889-895 MD denotes should
T14600 896-898 VB denotes be
T14595 899-908 VBN denotes confirmed
T14601 909-911 IN denotes in
T14602 912-918 JJ denotes future
T14603 919-926 NNS denotes studies
T14604 926-927 . denotes .
R4353 T14430 T14431 advmod Therefore,presented
R4355 T14432 T14431 punct ", ",presented
R4357 T14433 T14431 nsubj we,presented
R4358 T14434 T14431 aux have,presented
R4359 T14435 T14436 det a,strategy
R4360 T14436 T14431 dobj strategy,presented
R4362 T14437 T14438 aux to,identify
R4363 T14438 T14436 advcl identify,strategy
R4365 T14439 T14440 amod small,effect
R4367 T14440 T14442 compound effect,QTL
R4370 T14441 T14440 punct -,effect
R4372 T14442 T14438 dobj QTL,identify
R4373 T14443 T14438 cc and,identify
R4374 T14444 T14438 conj search,identify
R4376 T14445 T14444 prep for,search
R4377 T14446 T14447 amod potential,genes
R4379 T14447 T14445 pobj genes,for
R4380 T14448 T14447 compound candidate,genes
R4381 T14449 T14444 prep within,search
R4382 T14450 T14449 pobj them,within
R4384 T14451 T14431 punct .,presented
R4386 T14453 T14454 advmod However,is
R4387 T14455 T14454 punct ", ",is
R4389 T14456 T14454 nsubj it,is
R4390 T14457 T14454 acomp noteworthy,is
R4391 T14458 T14459 mark that,lead
R4392 T14459 T14454 ccomp lead,is
R4393 T14460 T14461 det the,threshold
R4394 T14461 T14459 nsubj threshold,lead
R4395 T14462 T14461 amod low,threshold
R4397 T14463 T14461 amod statistical,threshold
R4398 T14464 T14461 cc and,threshold
R4399 T14465 T14466 amod small,number
R4400 T14466 T14461 conj number,threshold
R4402 T14467 T14466 prep of,number
R4403 T14468 T14467 pobj animals,of
R4404 T14469 T14466 prep per,number
R4406 T14470 T14469 pobj group,per
R4407 T14471 T14459 aux could,lead
R4408 T14472 T14459 prep to,lead
R4410 T14473 T14474 det some,results
R4411 T14474 T14472 pobj results,to
R4412 T14475 T14476 amod false,positive
R4414 T14476 T14474 amod positive,results
R4415 T14477 T14454 punct .,is
R4417 T14479 T14480 prep On,be
R4418 T14481 T14482 det the,level
R4420 T14482 T14479 pobj level,On
R4421 T14483 T14482 compound genome,level
R4422 T14484 T14480 punct ", ",be
R4424 T14485 T14480 nsubj some,be
R4425 T14486 T14485 prep of,some
R4426 T14487 T14488 det the,QTL
R4427 T14488 T14486 pobj QTL,of
R4429 T14489 T14488 nummod eight,QTL
R4430 T14490 T14491 amod small,effect
R4431 T14491 T14488 compound effect,QTL
R4433 T14492 T14491 punct -,effect
R4434 T14493 T14488 acl identified,QTL
R4435 T14494 T14493 advcl using,identified
R4436 T14495 T14496 det a,value
R4438 T14496 T14494 dobj value,using
R4439 T14497 T14498 advmod very,low
R4440 T14498 T14496 amod low,value
R4442 T14499 T14496 compound threshold,value
R4443 T14500 T14501 punct (,0.05
R4444 T14501 T14496 parataxis 0.05,value
R4445 T14502 T14501 nsubj P,0.05
R4446 T14503 T14501 punct <,0.05
R4447 T14504 T14501 punct ),0.05
R4449 T14505 T14480 aux could,be
R4450 T14506 T14507 amod false,positives
R4451 T14507 T14480 attr positives,be
R4453 T14508 T14480 punct .,be
R4454 T14510 T14511 prep For,identified
R4456 T14512 T14510 pobj example,For
R4457 T14513 T14511 punct ", ",identified
R4459 T14514 T14511 nsubjpass locus,identified
R4460 T14515 T14514 nummod 4,locus
R4463 T14516 T14511 auxpass was,identified
R4465 T14517 T14511 prep with,identified
R4466 T14518 T14519 det a,value
R4467 T14519 T14517 pobj value,with
R4469 T14520 T14519 amod low,value
R4470 T14521 T14519 compound P,value
R4471 T14522 T14511 cc and,identified
R4473 T14523 T14524 aux does,overlap
R4474 T14524 T14511 conj overlap,identified
R4475 T14525 T14524 neg not,overlap
R4478 T14526 T14524 prep with,overlap
R4479 T14527 T14528 det any,QTL
R4481 T14528 T14526 pobj QTL,with
R4482 T14529 T14530 advmod previously,identified
R4483 T14530 T14528 amod identified,QTL
R4485 T14531 T14528 compound arthritis,QTL
R4486 T14532 T14511 punct .,identified
R4488 T14534 T14535 prep On,result
R4489 T14536 T14537 det the,level
R4491 T14537 T14534 pobj level,On
R4492 T14538 T14537 compound transcriptome,level
R4493 T14539 T14535 punct ", ",result
R4495 T14540 T14541 det the,number
R4496 T14541 T14535 nsubj number,result
R4497 T14542 T14541 amod small,number
R4498 T14543 T14541 prep of,number
R4499 T14544 T14543 pobj animals,of
R4500 T14545 T14541 prep per,number
R4501 T14546 T14545 pobj group,per
R4505 T14547 T14541 cc and,number
R4506 T14548 T14549 det the,threshold
R4507 T14549 T14541 conj threshold,number
R4509 T14550 T14549 amod low,threshold
R4510 T14551 T14549 acl used,threshold
R4511 T14552 T14553 aux to,detect
R4513 T14553 T14551 advcl detect,used
R4514 T14554 T14555 compound gene,expression
R4515 T14555 T14553 dobj expression,detect
R4517 T14556 T14535 aux could,result
R4518 T14557 T14535 advmod also,result
R4520 T14558 T14535 prep in,result
R4521 T14559 T14560 amod false,positives
R4522 T14560 T14558 pobj positives,in
R4523 T14561 T14535 prep in,result
R4525 T14562 T14563 det the,genes
R4526 T14563 T14561 pobj genes,in
R4528 T14564 T14565 advmod differentially,expressed
R4529 T14565 T14563 amod expressed,genes
R4530 T14566 T14535 punct .,result
R4532 T14568 T14569 advmod Furthermore,result
R4534 T14570 T14569 punct ", ",result
R4535 T14571 T14572 det the,expression
R4536 T14572 T14569 nsubj expression,result
R4538 T14573 T14572 amod differential,expression
R4539 T14574 T14572 prep of,expression
R4540 T14575 T14576 det a,gene
R4541 T14576 T14574 pobj gene,of
R4543 T14577 T14569 aux could,result
R4544 T14578 T14579 preconj not,from
R4545 T14579 T14569 prep from,result
R4547 T14580 T14578 advmod only,not
R4548 T14581 T14582 compound allele,difference
R4549 T14582 T14579 pobj difference,from
R4550 T14583 T14582 prep between,difference
R4551 T14584 T14585 nummod two,strains
R4552 T14585 T14583 pobj strains,between
R4553 T14586 T14579 punct ", ",from
R4554 T14587 T14579 cc but,from
R4555 T14588 T14587 advmod also,but
R4556 T14589 T14579 conj from,from
R4557 T14590 T14591 amod other,factors
R4558 T14591 T14589 pobj factors,from
R4559 T14592 T14569 punct .,result
R4560 T14594 T14595 advmod Therefore,confirmed
R4561 T14596 T14595 punct ", ",confirmed
R4562 T14597 T14598 poss our,findings
R4563 T14598 T14595 nsubjpass findings,confirmed
R4564 T14599 T14595 aux should,confirmed
R4565 T14600 T14595 auxpass be,confirmed
R4566 T14601 T14595 prep in,confirmed
R4567 T14602 T14603 amod future,studies
R4568 T14603 T14601 pobj studies,in
R4569 T14604 T14595 punct .,confirmed