PMC:1626108 / 45226-47624 JSONTXT 5 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T8888 0-6 NN denotes Retina
T8889 7-18 NNS denotes dissections
T8891 18-20 , denotes ,
T8892 20-26 JJ denotes radial
T8893 27-39 NNS denotes cryosections
T8894 40-41 -LRB- denotes (
T8896 41-42 SYM denotes ~
T8897 42-43 CD denotes 6
T8895 44-46 NNS denotes μm
T8898 46-47 -RRB- denotes )
T8899 47-49 , denotes ,
T8900 49-52 CC denotes and
T8901 53-73 NN denotes immunohistochemistry
T8902 74-84 NNS denotes procedures
T8903 85-89 VBD denotes were
T8890 90-97 VBN denotes carried
T8904 98-101 RP denotes out
T8905 102-104 IN denotes as
T8906 105-114 VBN denotes described
T8907 115-124 RB denotes elsewhere
T8908 125-126 -LRB- denotes [
T8909 126-128 CD denotes 19
T8910 128-129 -RRB- denotes ]
T8911 129-130 . denotes .
T8912 130-275 sentence denotes Brains from 3- to 5-mo-old C57Bl/6 mice were fixed overnight in 2% paraformaldehyde, infused with 30% sucrose, and processed for cryosectioning.
T8913 131-137 NNS denotes Brains
T8915 138-142 IN denotes from
T8916 143-144 CD denotes 3
T8918 144-145 HYPH denotes -
T8919 146-148 IN denotes to
T8917 149-150 CD denotes 5
T8921 150-151 HYPH denotes -
T8920 151-153 NN denotes mo
T8923 153-154 HYPH denotes -
T8922 154-157 JJ denotes old
T8925 158-163 NN denotes C57Bl
T8926 163-164 HYPH denotes /
T8927 164-165 CD denotes 6
T8924 166-170 NNS denotes mice
T8928 171-175 VBD denotes were
T8914 176-181 VBN denotes fixed
T8929 182-191 RB denotes overnight
T8930 192-194 IN denotes in
T8931 195-196 CD denotes 2
T8932 196-197 NN denotes %
T8933 198-214 NN denotes paraformaldehyde
T8934 214-216 , denotes ,
T8935 216-223 VBN denotes infused
T8936 224-228 IN denotes with
T8937 229-231 CD denotes 30
T8938 231-232 NN denotes %
T8939 233-240 NN denotes sucrose
T8940 240-242 , denotes ,
T8941 242-245 CC denotes and
T8942 246-255 VBN denotes processed
T8943 256-259 IN denotes for
T8944 260-274 VBG denotes cryosectioning
T8945 274-275 . denotes .
T8946 275-353 sentence denotes Primary brain neurons and glial cells were prepared from the cerebral cortex.
T8947 276-283 JJ denotes Primary
T8949 284-289 NN denotes brain
T8948 290-297 NNS denotes neurons
T8951 298-301 CC denotes and
T8952 302-307 JJ denotes glial
T8953 308-313 NNS denotes cells
T8954 314-318 VBD denotes were
T8950 319-327 VBN denotes prepared
T8955 328-332 IN denotes from
T8956 333-336 DT denotes the
T8958 337-345 JJ denotes cerebral
T8957 346-352 NN denotes cortex
T8959 352-353 . denotes .
T8960 353-425 sentence denotes This was macerated in the Hank's Balanced Salt solution and triturated.
T8961 354-358 DT denotes This
T8963 359-362 VBD denotes was
T8962 363-372 VBN denotes macerated
T8964 373-375 IN denotes in
T8965 376-379 DT denotes the
T8967 380-384 NNP denotes Hank
T8969 384-386 POS denotes 's
T8970 387-395 NNP denotes Balanced
T8968 396-400 NNP denotes Salt
T8966 401-409 NN denotes solution
T8971 410-413 CC denotes and
T8972 414-424 VBN denotes triturated
T8973 424-425 . denotes .
T8974 425-662 sentence denotes Primary cells were cultured in DMEM (GIBCO, San Diego, California, United States) and collagen-coated 35-mm glass bottom culture dishes (MatTek Corporation, Ashland, Maine) at 5% CO2/37 °C for ~2 d and processed for immunocytochemistry.
T8975 426-433 JJ denotes Primary
T8976 434-439 NNS denotes cells
T8978 440-444 VBD denotes were
T8977 445-453 VBN denotes cultured
T8979 454-456 IN denotes in
T8980 457-461 NN denotes DMEM
T8981 462-463 -LRB- denotes (
T8982 463-468 NNP denotes GIBCO
T8983 468-470 , denotes ,
T8984 470-473 NNP denotes San
T8985 474-479 NNP denotes Diego
T8986 479-481 , denotes ,
T8987 481-491 NNP denotes California
T8988 491-493 , denotes ,
T8989 493-499 NNP denotes United
T8990 500-506 NNP denotes States
T8991 506-507 -RRB- denotes )
T8992 508-511 CC denotes and
T8993 512-520 NN denotes collagen
T8995 520-521 HYPH denotes -
T8994 521-527 VBN denotes coated
T8997 528-530 CD denotes 35
T8999 530-531 HYPH denotes -
T8998 531-533 NN denotes mm
T9000 534-539 NN denotes glass
T9001 540-546 NN denotes bottom
T9002 547-554 NN denotes culture
T8996 555-561 NNS denotes dishes
T9003 562-563 -LRB- denotes (
T9005 563-569 NNP denotes MatTek
T9004 570-581 NNP denotes Corporation
T9006 581-583 , denotes ,
T9007 583-590 NNP denotes Ashland
T9008 590-592 , denotes ,
T9009 592-597 NNP denotes Maine
T9010 597-598 -RRB- denotes )
T9011 599-601 IN denotes at
T9012 602-603 CD denotes 5
T9013 603-604 NN denotes %
T9014 605-608 NN denotes CO2
T9015 608-609 HYPH denotes /
T9016 609-611 CD denotes 37
T9017 612-614 NN denotes °C
T9018 615-618 IN denotes for
T9019 619-620 SYM denotes ~
T9020 620-621 CD denotes 2
T9021 622-623 NNS denotes d
T9022 624-627 CC denotes and
T9023 628-637 VBN denotes processed
T9024 638-641 IN denotes for
T9025 642-661 NN denotes immunocytochemistry
T9026 661-662 . denotes .
T9027 662-724 sentence denotes Primary antibodies were used at concentrations ~2.5–10 μg/ml.
T9028 663-670 JJ denotes Primary
T9029 671-681 NNS denotes antibodies
T9031 682-686 VBD denotes were
T9030 687-691 VBN denotes used
T9032 692-694 IN denotes at
T9033 695-709 NNS denotes concentrations
T9034 710-711 SYM denotes ~
T9036 711-714 CD denotes 2.5
T9037 714-715 SYM denotes
T9035 715-717 CD denotes 10
T9038 718-720 NN denotes μg
T9039 720-721 SYM denotes /
T9040 721-723 NN denotes ml
T9041 723-724 . denotes .
T9042 724-853 sentence denotes Alexa 488- and Alexa 594-conjugated secondary antibodies (2.5 μg/ml) (Molecular Probes) were used for visualization of proteins.
T9043 725-730 NNP denotes Alexa
T9045 731-734 CD denotes 488
T9046 734-735 HYPH denotes -
T9047 736-739 CC denotes and
T9048 740-745 NNP denotes Alexa
T9049 746-749 JJ denotes 594
T9050 749-750 HYPH denotes -
T9044 750-760 JJ denotes conjugated
T9052 761-770 JJ denotes secondary
T9051 771-781 NNS denotes antibodies
T9054 782-783 -LRB- denotes (
T9056 783-786 CD denotes 2.5
T9055 787-789 NNS denotes μg
T9057 789-790 SYM denotes /
T9058 790-792 NN denotes ml
T9059 792-793 -RRB- denotes )
T9060 794-795 -LRB- denotes (
T9062 795-804 NNP denotes Molecular
T9061 805-811 NNP denotes Probes
T9063 811-812 -RRB- denotes )
T9064 813-817 VBD denotes were
T9053 818-822 VBN denotes used
T9065 823-826 IN denotes for
T9066 827-840 NN denotes visualization
T9067 841-843 IN denotes of
T9068 844-852 NN denotes proteins
T9069 852-853 . denotes .
T9070 853-948 sentence denotes Crossover of fluorescent probes, background, and autofluorescence were found to be negligible.
T9071 854-863 NN denotes Crossover
T9073 864-866 IN denotes of
T9074 867-878 JJ denotes fluorescent
T9075 879-885 NNS denotes probes
T9076 885-887 , denotes ,
T9077 887-897 NN denotes background
T9078 897-899 , denotes ,
T9079 899-902 CC denotes and
T9080 903-919 NN denotes autofluorescence
T9081 920-924 VBD denotes were
T9072 925-930 VBN denotes found
T9082 931-933 TO denotes to
T9083 934-936 VB denotes be
T9084 937-947 JJ denotes negligible
T9085 947-948 . denotes .
T9086 948-1186 sentence denotes Visualization of specimens and localization of proteins were carried out by wide-field epifluorescence microscopy on Nikon (Tokyo, Japan) E600 upright and TE2000U inverted research microscopes equipped with similar Apochromat objectives.
T9087 949-962 NN denotes Visualization
T9089 963-965 IN denotes of
T9090 966-975 NNS denotes specimens
T9091 976-979 CC denotes and
T9092 980-992 NN denotes localization
T9093 993-995 IN denotes of
T9094 996-1004 NN denotes proteins
T9095 1005-1009 VBD denotes were
T9088 1010-1017 VBN denotes carried
T9096 1018-1021 RP denotes out
T9097 1022-1024 IN denotes by
T9098 1025-1029 JJ denotes wide
T9100 1029-1030 HYPH denotes -
T9099 1030-1035 NN denotes field
T9102 1036-1051 NN denotes epifluorescence
T9101 1052-1062 NN denotes microscopy
T9103 1063-1065 IN denotes on
T9104 1066-1071 NNP denotes Nikon
T9106 1072-1073 -LRB- denotes (
T9107 1073-1078 NNP denotes Tokyo
T9108 1078-1080 , denotes ,
T9109 1080-1085 NNP denotes Japan
T9110 1085-1086 -RRB- denotes )
T9111 1087-1091 NN denotes E600
T9105 1092-1099 NN denotes upright
T9112 1100-1103 CC denotes and
T9113 1104-1111 NN denotes TE2000U
T9115 1112-1120 VBN denotes inverted
T9116 1121-1129 NN denotes research
T9114 1130-1141 NNS denotes microscopes
T9117 1142-1150 VBN denotes equipped
T9118 1151-1155 IN denotes with
T9119 1156-1163 JJ denotes similar
T9121 1164-1174 NN denotes Apochromat
T9120 1175-1185 NNS denotes objectives
T9122 1185-1186 . denotes .
T9123 1186-1393 sentence denotes Images with the Nikon E600 were acquired with a SPOT-RT digital camera coupled to the microscope and driven by SPOT Imaging v4.0 software (Diagnostic Instruments, Sterling Heights, Michigan, United States).
T9124 1187-1193 NNS denotes Images
T9126 1194-1198 IN denotes with
T9127 1199-1202 DT denotes the
T9129 1203-1208 NNP denotes Nikon
T9128 1209-1213 NN denotes E600
T9130 1214-1218 VBD denotes were
T9125 1219-1227 VBN denotes acquired
T9131 1228-1232 IN denotes with
T9132 1233-1234 DT denotes a
T9134 1235-1239 NN denotes SPOT
T9136 1239-1240 HYPH denotes -
T9135 1240-1242 NN denotes RT
T9137 1243-1250 JJ denotes digital
T9133 1251-1257 NN denotes camera
T9138 1258-1265 VBN denotes coupled
T9139 1266-1268 IN denotes to
T9140 1269-1272 DT denotes the
T9141 1273-1283 NN denotes microscope
T9142 1284-1287 CC denotes and
T9143 1288-1294 VBN denotes driven
T9144 1295-1297 IN denotes by
T9145 1298-1302 NN denotes SPOT
T9147 1303-1310 NN denotes Imaging
T9146 1311-1315 NN denotes v4.0
T9148 1316-1324 NN denotes software
T9149 1325-1326 -LRB- denotes (
T9151 1326-1336 NNP denotes Diagnostic
T9150 1337-1348 NNPS denotes Instruments
T9152 1348-1350 , denotes ,
T9153 1350-1358 NNP denotes Sterling
T9154 1359-1366 NNP denotes Heights
T9155 1366-1368 , denotes ,
T9156 1368-1376 NNP denotes Michigan
T9157 1376-1378 , denotes ,
T9158 1378-1384 NNP denotes United
T9159 1385-1391 NNP denotes States
T9160 1391-1392 -RRB- denotes )
T9161 1392-1393 . denotes .
T9162 1393-1505 sentence denotes All images were captured at nonsaturating integration levels, 12-bit mono black/white, and then pseudo-colored.
T9163 1394-1397 DT denotes All
T9164 1398-1404 NNS denotes images
T9166 1405-1409 VBD denotes were
T9165 1410-1418 VBN denotes captured
T9167 1419-1421 IN denotes at
T9168 1422-1435 NN denotes nonsaturating
T9170 1436-1447 NN denotes integration
T9169 1448-1454 NNS denotes levels
T9171 1454-1456 , denotes ,
T9172 1456-1458 CD denotes 12
T9174 1458-1459 HYPH denotes -
T9173 1459-1462 JJ denotes bit
T9176 1463-1467 NN denotes mono
T9177 1468-1473 JJ denotes black
T9178 1473-1474 HYPH denotes /
T9175 1474-1479 JJ denotes white
T9179 1479-1481 , denotes ,
T9180 1481-1484 CC denotes and
T9181 1485-1489 RB denotes then
T9182 1490-1504 VBN denotes pseudo-colored
T9183 1504-1505 . denotes .
T9184 1505-1901 sentence denotes Protein colocalization analysis was carried out on the Nikon TE2000U microscope equipped with appropriate excitation and emission filter wheels, cube filters, 100 W mercury light source, Nomarski/DIC, and Plan Apochromat optics (100×, 60×, and 40× oil objectives with NA of 1.4, 40 ×LWD, and 20 ×LWD objectives and encoded motorized Z-Stage (Prior Scientific, Rockland, Maryland, United States).
T9185 1506-1513 NN denotes Protein
T9186 1514-1528 NN denotes colocalization
T9187 1529-1537 NN denotes analysis
T9189 1538-1541 VBD denotes was
T9188 1542-1549 VBN denotes carried
T9190 1550-1553 RP denotes out
T9191 1554-1556 IN denotes on
T9192 1557-1560 DT denotes the
T9194 1561-1566 NNP denotes Nikon
T9195 1567-1574 NN denotes TE2000U
T9193 1575-1585 NN denotes microscope
T9196 1586-1594 VBN denotes equipped
T9197 1595-1599 IN denotes with
T9198 1600-1611 JJ denotes appropriate
T9200 1612-1622 NN denotes excitation
T9201 1623-1626 CC denotes and
T9202 1627-1635 NN denotes emission
T9203 1636-1642 NN denotes filter
T9199 1643-1649 NNS denotes wheels
T9204 1649-1651 , denotes ,
T9205 1651-1655 NN denotes cube
T9206 1656-1663 NNS denotes filters
T9207 1663-1665 , denotes ,
T9208 1665-1668 CD denotes 100
T9209 1669-1670 NNP denotes W
T9211 1671-1678 NN denotes mercury
T9212 1679-1684 NN denotes light
T9210 1685-1691 NN denotes source
T9213 1691-1693 , denotes ,
T9214 1693-1701 NNP denotes Nomarski
T9216 1701-1702 HYPH denotes /
T9215 1702-1705 NNP denotes DIC
T9218 1705-1707 , denotes ,
T9219 1707-1710 CC denotes and
T9220 1711-1715 NNP denotes Plan
T9221 1716-1726 NNP denotes Apochromat
T9217 1727-1733 NNS denotes optics
T9222 1734-1735 -LRB- denotes (
T9223 1735-1738 CD denotes 100
T9225 1738-1739 SYM denotes ×
T9226 1739-1741 , denotes ,
T9227 1741-1743 CD denotes 60
T9228 1743-1744 SYM denotes ×
T9229 1744-1746 , denotes ,
T9230 1746-1749 CC denotes and
T9231 1750-1752 CD denotes 40
T9232 1752-1753 SYM denotes ×
T9233 1754-1757 NN denotes oil
T9224 1758-1768 NNS denotes objectives
T9234 1769-1773 IN denotes with
T9235 1774-1776 NN denotes NA
T9236 1777-1779 IN denotes of
T9237 1780-1783 CD denotes 1.4
T9238 1783-1785 , denotes ,
T9239 1785-1787 CD denotes 40
T9241 1788-1789 SYM denotes ×
T9240 1789-1792 NN denotes LWD
T9243 1792-1794 , denotes ,
T9244 1794-1797 CC denotes and
T9245 1798-1800 CD denotes 20
T9247 1801-1802 SYM denotes ×
T9246 1802-1805 NN denotes LWD
T9242 1806-1816 NNS denotes objectives
T9248 1817-1820 CC denotes and
T9249 1821-1828 VBN denotes encoded
T9251 1829-1838 VBN denotes motorized
T9252 1839-1840 NNP denotes Z
T9253 1840-1841 HYPH denotes -
T9250 1841-1846 NNP denotes Stage
T9254 1847-1848 -LRB- denotes (
T9256 1848-1853 NNP denotes Prior
T9255 1854-1864 NNP denotes Scientific
T9257 1864-1866 , denotes ,
T9258 1866-1874 NNP denotes Rockland
T9259 1874-1876 , denotes ,
T9260 1876-1884 NNP denotes Maryland
T9261 1884-1886 , denotes ,
T9262 1886-1892 NNP denotes United
T9263 1893-1899 NNP denotes States
T9264 1899-1900 -RRB- denotes )
T9265 1900-1901 . denotes .
T9266 1901-2053 sentence denotes Images with the inverted Nikon TE2000U microscope were obtained using a CCD camera (CoolSNAP HQ; Roper Scientific, Trenton, New Jersey, United States).
T9267 1902-1908 NNS denotes Images
T9269 1909-1913 IN denotes with
T9270 1914-1917 DT denotes the
T9272 1918-1926 VBN denotes inverted
T9273 1927-1932 NNP denotes Nikon
T9274 1933-1940 NN denotes TE2000U
T9271 1941-1951 NN denotes microscope
T9275 1952-1956 VBD denotes were
T9268 1957-1965 VBN denotes obtained
T9276 1966-1971 VBG denotes using
T9277 1972-1973 DT denotes a
T9279 1974-1977 NN denotes CCD
T9278 1978-1984 NN denotes camera
T9280 1985-1986 -LRB- denotes (
T9281 1986-1994 NNP denotes CoolSNAP
T9282 1995-1997 NNP denotes HQ
T9283 1997-1998 : denotes ;
T9285 1999-2004 NNP denotes Roper
T9284 2005-2015 NNP denotes Scientific
T9286 2015-2017 , denotes ,
T9287 2017-2024 NNP denotes Trenton
T9288 2024-2026 , denotes ,
T9289 2026-2029 NNP denotes New
T9290 2030-2036 NNP denotes Jersey
T9291 2036-2038 , denotes ,
T9292 2038-2044 NNP denotes United
T9293 2045-2051 NNP denotes States
T9294 2051-2052 -RRB- denotes )
T9295 2052-2053 . denotes .
T9296 2053-2209 sentence denotes Images acquired under identical acquisition parameters were analyzed using Metamorph Software v6.2 (Universal Imaging, Glendale, Wisconsin, United States).
T9297 2054-2060 NNS denotes Images
T9299 2061-2069 VBN denotes acquired
T9300 2070-2075 IN denotes under
T9301 2076-2085 JJ denotes identical
T9303 2086-2097 NN denotes acquisition
T9302 2098-2108 NNS denotes parameters
T9304 2109-2113 VBD denotes were
T9298 2114-2122 VBN denotes analyzed
T9305 2123-2128 VBG denotes using
T9306 2129-2138 NNP denotes Metamorph
T9308 2139-2147 NNP denotes Software
T9307 2148-2152 NN denotes v6.2
T9309 2153-2154 -LRB- denotes (
T9311 2154-2163 NNP denotes Universal
T9310 2164-2171 NNP denotes Imaging
T9312 2171-2173 , denotes ,
T9313 2173-2181 NNP denotes Glendale
T9314 2181-2183 , denotes ,
T9315 2183-2192 NNP denotes Wisconsin
T9316 2192-2194 , denotes ,
T9317 2194-2200 NNP denotes United
T9318 2201-2207 NNP denotes States
T9319 2207-2208 -RRB- denotes )
T9320 2208-2209 . denotes .
T9321 2209-2398 sentence denotes Whenever applicable, serial optical Z-stacks (20–30 focal planes at 100-nm intervals) were captured and computationally processed by 3-D blind deconvolution methods with the same software.
T9322 2210-2218 RB denotes Whenever
T9323 2219-2229 JJ denotes applicable
T9325 2229-2231 , denotes ,
T9326 2231-2237 JJ denotes serial
T9328 2238-2245 JJ denotes optical
T9329 2246-2247 NN denotes Z
T9330 2247-2248 HYPH denotes -
T9327 2248-2254 NNS denotes stacks
T9331 2255-2256 -LRB- denotes (
T9332 2256-2258 CD denotes 20
T9334 2258-2259 SYM denotes
T9333 2259-2261 CD denotes 30
T9336 2262-2267 JJ denotes focal
T9335 2268-2274 NNS denotes planes
T9337 2275-2277 IN denotes at
T9338 2278-2281 CD denotes 100
T9340 2281-2282 HYPH denotes -
T9339 2282-2284 NN denotes nm
T9341 2285-2294 NNS denotes intervals
T9342 2294-2295 -RRB- denotes )
T9343 2296-2300 VBD denotes were
T9324 2301-2309 VBN denotes captured
T9344 2310-2313 CC denotes and
T9345 2314-2329 RB denotes computationally
T9346 2330-2339 VBN denotes processed
T9347 2340-2342 IN denotes by
T9348 2343-2344 CD denotes 3
T9350 2344-2345 HYPH denotes -
T9349 2345-2346 NN denotes D
T9352 2347-2352 JJ denotes blind
T9353 2353-2366 NN denotes deconvolution
T9351 2367-2374 NNS denotes methods
T9354 2375-2379 IN denotes with
T9355 2380-2383 DT denotes the
T9357 2384-2388 JJ denotes same
T9356 2389-2397 NN denotes software
T9358 2397-2398 . denotes .
R5837 T8888 T8889 compound Retina,dissections
R5838 T8889 T8890 nsubjpass dissections,carried
R5839 T8891 T8889 punct ", ",dissections
R5840 T8892 T8893 amod radial,cryosections
R5841 T8893 T8889 conj cryosections,dissections
R5842 T8894 T8895 punct (,μm
R5843 T8895 T8893 parataxis μm,cryosections
R5844 T8896 T8897 punct ~,6
R5845 T8897 T8895 nummod 6,μm
R5846 T8898 T8895 punct ),μm
R5847 T8899 T8893 punct ", ",cryosections
R5848 T8900 T8893 cc and,cryosections
R5849 T8901 T8902 compound immunohistochemistry,procedures
R5850 T8902 T8893 conj procedures,cryosections
R5851 T8903 T8890 auxpass were,carried
R5852 T8904 T8890 prt out,carried
R5853 T8905 T8906 mark as,described
R5854 T8906 T8890 advcl described,carried
R5855 T8907 T8906 advmod elsewhere,described
R5856 T8908 T8909 punct [,19
R5857 T8909 T8906 parataxis 19,described
R5858 T8910 T8909 punct ],19
R5859 T8911 T8890 punct .,carried
R5860 T8913 T8914 nsubjpass Brains,fixed
R5861 T8915 T8913 prep from,Brains
R5862 T8916 T8917 quantmod 3,5
R5863 T8917 T8920 nummod 5,mo
R5864 T8918 T8917 punct -,5
R5865 T8919 T8917 quantmod to,5
R5866 T8920 T8922 npadvmod mo,old
R5867 T8921 T8920 punct -,mo
R5868 T8922 T8924 amod old,mice
R5869 T8923 T8922 punct -,old
R5870 T8924 T8915 pobj mice,from
R5871 T8925 T8924 nmod C57Bl,mice
R5872 T8926 T8925 punct /,C57Bl
R5873 T8927 T8925 nummod 6,C57Bl
R5874 T8928 T8914 auxpass were,fixed
R5875 T8929 T8914 advmod overnight,fixed
R5876 T8930 T8914 prep in,fixed
R5877 T8931 T8932 nummod 2,%
R5878 T8932 T8933 compound %,paraformaldehyde
R5879 T8933 T8930 pobj paraformaldehyde,in
R5880 T8934 T8914 punct ", ",fixed
R5881 T8935 T8914 conj infused,fixed
R5882 T8936 T8935 prep with,infused
R5883 T8937 T8938 nummod 30,%
R5884 T8938 T8939 compound %,sucrose
R5885 T8939 T8936 pobj sucrose,with
R5886 T8940 T8935 punct ", ",infused
R5887 T8941 T8935 cc and,infused
R5888 T8942 T8935 conj processed,infused
R5889 T8943 T8942 prep for,processed
R5890 T8944 T8943 pobj cryosectioning,for
R5891 T8945 T8914 punct .,fixed
R5892 T8947 T8948 amod Primary,neurons
R5893 T8948 T8950 nsubjpass neurons,prepared
R5894 T8949 T8948 compound brain,neurons
R5895 T8951 T8948 cc and,neurons
R5896 T8952 T8953 amod glial,cells
R5897 T8953 T8948 conj cells,neurons
R5898 T8954 T8950 auxpass were,prepared
R5899 T8955 T8950 prep from,prepared
R5900 T8956 T8957 det the,cortex
R5901 T8957 T8955 pobj cortex,from
R5902 T8958 T8957 amod cerebral,cortex
R5903 T8959 T8950 punct .,prepared
R5904 T8961 T8962 nsubjpass This,macerated
R5905 T8963 T8962 auxpass was,macerated
R5906 T8964 T8962 prep in,macerated
R5907 T8965 T8966 det the,solution
R5908 T8966 T8964 pobj solution,in
R5909 T8967 T8968 poss Hank,Salt
R5910 T8968 T8966 compound Salt,solution
R5911 T8969 T8967 case 's,Hank
R5912 T8970 T8968 compound Balanced,Salt
R5913 T8971 T8962 cc and,macerated
R5914 T8972 T8962 conj triturated,macerated
R5915 T8973 T8962 punct .,macerated
R5916 T8975 T8976 amod Primary,cells
R5917 T8976 T8977 nsubjpass cells,cultured
R5918 T8978 T8977 auxpass were,cultured
R5919 T8979 T8977 prep in,cultured
R5920 T8980 T8979 pobj DMEM,in
R5921 T8981 T8982 punct (,GIBCO
R5922 T8982 T8980 parataxis GIBCO,DMEM
R5923 T8983 T8982 punct ", ",GIBCO
R5924 T8984 T8985 compound San,Diego
R5925 T8985 T8982 npadvmod Diego,GIBCO
R5926 T8986 T8982 punct ", ",GIBCO
R5927 T8987 T8982 npadvmod California,GIBCO
R5928 T8988 T8982 punct ", ",GIBCO
R5929 T8989 T8990 compound United,States
R5930 T8990 T8982 npadvmod States,GIBCO
R5931 T8991 T8982 punct ),GIBCO
R5932 T8992 T8980 cc and,DMEM
R5933 T8993 T8994 npadvmod collagen,coated
R5934 T8994 T8996 amod coated,dishes
R5935 T8995 T8994 punct -,coated
R5936 T8996 T8980 conj dishes,DMEM
R5937 T8997 T8998 nummod 35,mm
R5938 T8998 T8996 compound mm,dishes
R5939 T8999 T8998 punct -,mm
R5940 T9000 T9001 compound glass,bottom
R5941 T9001 T8996 compound bottom,dishes
R5942 T9002 T8996 compound culture,dishes
R5943 T9003 T9004 punct (,Corporation
R5944 T9004 T8996 parataxis Corporation,dishes
R5945 T9005 T9004 compound MatTek,Corporation
R5946 T9006 T9004 punct ", ",Corporation
R5947 T9007 T9004 npadvmod Ashland,Corporation
R5948 T9008 T9004 punct ", ",Corporation
R5949 T9009 T9004 npadvmod Maine,Corporation
R5950 T9010 T9004 punct ),Corporation
R5951 T9011 T8977 prep at,cultured
R5952 T9012 T9013 nummod 5,%
R5953 T9013 T9014 compound %,CO2
R5954 T9014 T9011 pobj CO2,at
R5955 T9015 T9014 punct /,CO2
R5956 T9016 T9017 nummod 37,°C
R5957 T9017 T9014 appos °C,CO2
R5958 T9018 T8977 prep for,cultured
R5959 T9019 T9020 punct ~,2
R5960 T9020 T9021 nummod 2,d
R5961 T9021 T9018 pobj d,for
R5962 T9022 T8977 cc and,cultured
R5963 T9023 T8977 conj processed,cultured
R5964 T9024 T9023 prep for,processed
R5965 T9025 T9024 pobj immunocytochemistry,for
R5966 T9026 T8977 punct .,cultured
R5967 T9028 T9029 amod Primary,antibodies
R5968 T9029 T9030 nsubjpass antibodies,used
R5969 T9031 T9030 auxpass were,used
R5970 T9032 T9030 prep at,used
R5971 T9033 T9032 pobj concentrations,at
R5972 T9034 T9035 punct ~,10
R5973 T9035 T9038 nummod 10,μg
R5974 T9036 T9035 quantmod 2.5,10
R5975 T9037 T9035 punct –,10
R5976 T9038 T9033 npadvmod μg,concentrations
R5977 T9039 T9040 punct /,ml
R5978 T9040 T9038 prep ml,μg
R5979 T9041 T9030 punct .,used
R5980 T9043 T9044 npadvmod Alexa,conjugated
R5981 T9044 T9051 amod conjugated,antibodies
R5982 T9045 T9043 nummod 488,Alexa
R5983 T9046 T9043 punct -,Alexa
R5984 T9047 T9043 cc and,Alexa
R5985 T9048 T9043 conj Alexa,Alexa
R5986 T9049 T9048 amod 594,Alexa
R5987 T9050 T9044 punct -,conjugated
R5988 T9051 T9053 nsubjpass antibodies,used
R5989 T9052 T9051 amod secondary,antibodies
R5990 T9054 T9055 punct (,μg
R5991 T9055 T9051 parataxis μg,antibodies
R5992 T9056 T9055 nummod 2.5,μg
R5993 T9057 T9058 punct /,ml
R5994 T9058 T9055 prep ml,μg
R5995 T9059 T9055 punct ),μg
R5996 T9060 T9061 punct (,Probes
R5997 T9061 T9051 parataxis Probes,antibodies
R5998 T9062 T9061 compound Molecular,Probes
R5999 T9063 T9061 punct ),Probes
R6000 T9064 T9053 auxpass were,used
R6001 T9065 T9053 prep for,used
R6002 T9066 T9065 pobj visualization,for
R6003 T9067 T9066 prep of,visualization
R6004 T9068 T9067 pobj proteins,of
R6005 T9069 T9053 punct .,used
R6006 T9071 T9072 nsubjpass Crossover,found
R6007 T9073 T9071 prep of,Crossover
R6008 T9074 T9075 amod fluorescent,probes
R6009 T9075 T9073 pobj probes,of
R6010 T9076 T9075 punct ", ",probes
R6011 T9077 T9075 conj background,probes
R6012 T9078 T9077 punct ", ",background
R6013 T9079 T9077 cc and,background
R6014 T9080 T9077 conj autofluorescence,background
R6015 T9081 T9072 auxpass were,found
R6016 T9082 T9083 aux to,be
R6017 T9083 T9072 xcomp be,found
R6018 T9084 T9083 acomp negligible,be
R6019 T9085 T9072 punct .,found
R6020 T9087 T9088 nsubjpass Visualization,carried
R6021 T9089 T9087 prep of,Visualization
R6022 T9090 T9089 pobj specimens,of
R6023 T9091 T9087 cc and,Visualization
R6024 T9092 T9087 conj localization,Visualization
R6025 T9093 T9092 prep of,localization
R6026 T9094 T9093 pobj proteins,of
R6027 T9095 T9088 auxpass were,carried
R6028 T9096 T9088 prt out,carried
R6029 T9097 T9088 prep by,carried
R6030 T9098 T9099 amod wide,field
R6031 T9099 T9101 compound field,microscopy
R6032 T9100 T9099 punct -,field
R6033 T9101 T9097 pobj microscopy,by
R6034 T9102 T9101 compound epifluorescence,microscopy
R6035 T9103 T9088 prep on,carried
R6036 T9104 T9105 nmod Nikon,upright
R6037 T9105 T9103 pobj upright,on
R6038 T9106 T9107 punct (,Tokyo
R6039 T9107 T9104 parataxis Tokyo,Nikon
R6040 T9108 T9107 punct ", ",Tokyo
R6041 T9109 T9107 npadvmod Japan,Tokyo
R6042 T9110 T9107 punct ),Tokyo
R6043 T9111 T9105 compound E600,upright
R6044 T9112 T9105 cc and,upright
R6045 T9113 T9114 nmod TE2000U,microscopes
R6046 T9114 T9105 conj microscopes,upright
R6047 T9115 T9113 amod inverted,TE2000U
R6048 T9116 T9114 compound research,microscopes
R6049 T9117 T9105 acl equipped,upright
R6050 T9118 T9117 prep with,equipped
R6051 T9119 T9120 amod similar,objectives
R6052 T9120 T9118 pobj objectives,with
R6053 T9121 T9120 compound Apochromat,objectives
R6054 T9122 T9088 punct .,carried
R6055 T9124 T9125 nsubjpass Images,acquired
R6056 T9126 T9124 prep with,Images
R6057 T9127 T9128 det the,E600
R6058 T9128 T9126 pobj E600,with
R6059 T9129 T9128 compound Nikon,E600
R6060 T9130 T9125 auxpass were,acquired
R6061 T9131 T9125 prep with,acquired
R6062 T9132 T9133 det a,camera
R6063 T9133 T9131 pobj camera,with
R6064 T9134 T9135 nmod SPOT,RT
R6065 T9135 T9133 nmod RT,camera
R6066 T9136 T9135 punct -,RT
R6067 T9137 T9133 amod digital,camera
R6068 T9138 T9133 acl coupled,camera
R6069 T9139 T9138 prep to,coupled
R6070 T9140 T9141 det the,microscope
R6071 T9141 T9139 pobj microscope,to
R6072 T9142 T9138 cc and,coupled
R6073 T9143 T9138 conj driven,coupled
R6074 T9144 T9143 agent by,driven
R6075 T9145 T9146 compound SPOT,v4.0
R6076 T9146 T9148 compound v4.0,software
R6077 T9147 T9146 compound Imaging,v4.0
R6078 T9148 T9144 pobj software,by
R6079 T9149 T9150 punct (,Instruments
R6080 T9150 T9148 parataxis Instruments,software
R6081 T9151 T9150 compound Diagnostic,Instruments
R6082 T9152 T9150 punct ", ",Instruments
R6083 T9153 T9154 compound Sterling,Heights
R6084 T9154 T9150 npadvmod Heights,Instruments
R6085 T9155 T9150 punct ", ",Instruments
R6086 T9156 T9150 npadvmod Michigan,Instruments
R6087 T9157 T9150 punct ", ",Instruments
R6088 T9158 T9159 compound United,States
R6089 T9159 T9150 npadvmod States,Instruments
R6090 T9160 T9150 punct ),Instruments
R6091 T9161 T9125 punct .,acquired
R6092 T9163 T9164 det All,images
R6093 T9164 T9165 nsubjpass images,captured
R6094 T9166 T9165 auxpass were,captured
R6095 T9167 T9165 prep at,captured
R6096 T9168 T9169 compound nonsaturating,levels
R6097 T9169 T9167 pobj levels,at
R6098 T9170 T9169 compound integration,levels
R6099 T9171 T9169 punct ", ",levels
R6100 T9172 T9173 nummod 12,bit
R6101 T9173 T9175 nmod bit,white
R6102 T9174 T9173 punct -,bit
R6103 T9175 T9169 appos white,levels
R6104 T9176 T9175 nmod mono,white
R6105 T9177 T9175 amod black,white
R6106 T9178 T9175 punct /,white
R6107 T9179 T9165 punct ", ",captured
R6108 T9180 T9165 cc and,captured
R6109 T9181 T9182 advmod then,pseudo-colored
R6110 T9182 T9165 conj pseudo-colored,captured
R6111 T9183 T9165 punct .,captured
R6112 T9185 T9186 compound Protein,colocalization
R6113 T9186 T9187 compound colocalization,analysis
R6114 T9187 T9188 nsubjpass analysis,carried
R6115 T9189 T9188 auxpass was,carried
R6116 T9190 T9188 prt out,carried
R6117 T9191 T9188 prep on,carried
R6118 T9192 T9193 det the,microscope
R6119 T9193 T9191 pobj microscope,on
R6120 T9194 T9195 compound Nikon,TE2000U
R6121 T9195 T9193 compound TE2000U,microscope
R6122 T9196 T9193 acl equipped,microscope
R6123 T9197 T9196 prep with,equipped
R6124 T9198 T9199 amod appropriate,wheels
R6125 T9199 T9197 pobj wheels,with
R6126 T9200 T9199 nmod excitation,wheels
R6127 T9201 T9200 cc and,excitation
R6128 T9202 T9200 conj emission,excitation
R6129 T9203 T9199 compound filter,wheels
R6130 T9204 T9199 punct ", ",wheels
R6131 T9205 T9206 compound cube,filters
R6132 T9206 T9199 appos filters,wheels
R6133 T9207 T9199 punct ", ",wheels
R6134 T9208 T9209 nummod 100,W
R6135 T9209 T9210 compound W,source
R6136 T9210 T9199 appos source,wheels
R6137 T9211 T9210 compound mercury,source
R6138 T9212 T9210 compound light,source
R6139 T9213 T9199 punct ", ",wheels
R6140 T9214 T9215 nmod Nomarski,DIC
R6141 T9215 T9217 nmod DIC,optics
R6142 T9216 T9215 punct /,DIC
R6143 T9217 T9199 appos optics,wheels
R6144 T9218 T9215 punct ", ",DIC
R6145 T9219 T9215 cc and,DIC
R6146 T9220 T9221 compound Plan,Apochromat
R6147 T9221 T9215 conj Apochromat,DIC
R6148 T9222 T9217 punct (,optics
R6149 T9223 T9224 nummod 100,objectives
R6150 T9224 T9217 appos objectives,optics
R6151 T9225 T9223 punct ×,100
R6152 T9226 T9223 punct ", ",100
R6153 T9227 T9223 conj 60,100
R6154 T9228 T9227 punct ×,60
R6155 T9229 T9227 punct ", ",60
R6156 T9230 T9227 cc and,60
R6157 T9231 T9227 conj 40,60
R6158 T9232 T9231 punct ×,40
R6159 T9233 T9224 compound oil,objectives
R6160 T9234 T9224 prep with,objectives
R6161 T9235 T9234 pobj NA,with
R6162 T9236 T9235 prep of,NA
R6163 T9237 T9236 pobj 1.4,of
R6164 T9238 T9224 punct ", ",objectives
R6165 T9239 T9240 nummod 40,LWD
R6166 T9240 T9242 nmod LWD,objectives
R6167 T9241 T9239 punct ×,40
R6168 T9242 T9224 conj objectives,objectives
R6169 T9243 T9240 punct ", ",LWD
R6170 T9244 T9240 cc and,LWD
R6171 T9245 T9246 nummod 20,LWD
R6172 T9246 T9240 conj LWD,LWD
R6173 T9247 T9245 punct ×,20
R6174 T9248 T9242 cc and,objectives
R6175 T9249 T9250 amod encoded,Stage
R6176 T9250 T9242 conj Stage,objectives
R6177 T9251 T9250 amod motorized,Stage
R6178 T9252 T9250 compound Z,Stage
R6179 T9253 T9250 punct -,Stage
R6180 T9254 T9255 punct (,Scientific
R6181 T9255 T9250 parataxis Scientific,Stage
R6182 T9256 T9255 compound Prior,Scientific
R6183 T9257 T9255 punct ", ",Scientific
R6184 T9258 T9255 npadvmod Rockland,Scientific
R6185 T9259 T9255 punct ", ",Scientific
R6186 T9260 T9255 npadvmod Maryland,Scientific
R6187 T9261 T9255 punct ", ",Scientific
R6188 T9262 T9263 compound United,States
R6189 T9263 T9255 npadvmod States,Scientific
R6190 T9264 T9255 punct ),Scientific
R6191 T9265 T9188 punct .,carried
R6192 T9267 T9268 nsubjpass Images,obtained
R6193 T9269 T9267 prep with,Images
R6194 T9270 T9271 det the,microscope
R6195 T9271 T9269 pobj microscope,with
R6196 T9272 T9271 amod inverted,microscope
R6197 T9273 T9274 compound Nikon,TE2000U
R6198 T9274 T9271 compound TE2000U,microscope
R6199 T9275 T9268 auxpass were,obtained
R6200 T9276 T9268 advcl using,obtained
R6201 T9277 T9278 det a,camera
R6202 T9278 T9276 dobj camera,using
R6203 T9279 T9278 compound CCD,camera
R6204 T9280 T9278 punct (,camera
R6205 T9281 T9282 compound CoolSNAP,HQ
R6206 T9282 T9278 appos HQ,camera
R6207 T9283 T9284 punct ;,Scientific
R6208 T9284 T9278 parataxis Scientific,camera
R6209 T9285 T9284 compound Roper,Scientific
R6210 T9286 T9284 punct ", ",Scientific
R6211 T9287 T9284 npadvmod Trenton,Scientific
R6212 T9288 T9284 punct ", ",Scientific
R6213 T9289 T9290 compound New,Jersey
R6214 T9290 T9284 npadvmod Jersey,Scientific
R6215 T9291 T9284 punct ", ",Scientific
R6216 T9292 T9293 compound United,States
R6217 T9293 T9284 npadvmod States,Scientific
R6218 T9294 T9284 punct ),Scientific
R6219 T9295 T9268 punct .,obtained
R6220 T9297 T9298 nsubjpass Images,analyzed
R6221 T9299 T9297 acl acquired,Images
R6222 T9300 T9299 prep under,acquired
R6223 T9301 T9302 amod identical,parameters
R6224 T9302 T9300 pobj parameters,under
R6225 T9303 T9302 compound acquisition,parameters
R6226 T9304 T9298 auxpass were,analyzed
R6227 T9305 T9298 advcl using,analyzed
R6228 T9306 T9307 compound Metamorph,v6.2
R6229 T9307 T9305 dobj v6.2,using
R6230 T9308 T9307 compound Software,v6.2
R6231 T9309 T9310 punct (,Imaging
R6232 T9310 T9307 parataxis Imaging,v6.2
R6233 T9311 T9310 compound Universal,Imaging
R6234 T9312 T9310 punct ", ",Imaging
R6235 T9313 T9310 npadvmod Glendale,Imaging
R6236 T9314 T9310 punct ", ",Imaging
R6237 T9315 T9310 npadvmod Wisconsin,Imaging
R6238 T9316 T9310 punct ", ",Imaging
R6239 T9317 T9318 compound United,States
R6240 T9318 T9310 npadvmod States,Imaging
R6241 T9319 T9310 punct ),Imaging
R6242 T9320 T9298 punct .,analyzed
R6243 T9322 T9323 advmod Whenever,applicable
R6244 T9323 T9324 advcl applicable,captured
R6245 T9325 T9324 punct ", ",captured
R6246 T9326 T9327 amod serial,stacks
R6247 T9327 T9324 nsubjpass stacks,captured
R6248 T9328 T9327 amod optical,stacks
R6249 T9329 T9327 compound Z,stacks
R6250 T9330 T9327 punct -,stacks
R6251 T9331 T9327 punct (,stacks
R6252 T9332 T9333 quantmod 20,30
R6253 T9333 T9335 nummod 30,planes
R6254 T9334 T9333 punct –,30
R6255 T9335 T9327 appos planes,stacks
R6256 T9336 T9335 amod focal,planes
R6257 T9337 T9335 prep at,planes
R6258 T9338 T9339 nummod 100,nm
R6259 T9339 T9341 compound nm,intervals
R6260 T9340 T9339 punct -,nm
R6261 T9341 T9337 pobj intervals,at
R6262 T9342 T9324 punct ),captured
R6263 T9343 T9324 auxpass were,captured
R6264 T9344 T9324 cc and,captured
R6265 T9345 T9346 advmod computationally,processed
R6266 T9346 T9324 conj processed,captured
R6267 T9347 T9346 prep by,processed
R6268 T9348 T9349 nummod 3,D
R6269 T9349 T9351 nmod D,methods
R6270 T9350 T9349 punct -,D
R6271 T9351 T9347 pobj methods,by
R6272 T9352 T9351 amod blind,methods
R6273 T9353 T9351 compound deconvolution,methods
R6274 T9354 T9346 prep with,processed
R6275 T9355 T9356 det the,software
R6276 T9356 T9354 pobj software,with
R6277 T9357 T9356 amod same,software
R6278 T9358 T9324 punct .,captured