PMC:1584416 / 3184-4506 JSONTXT 5 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T781 0-3 NN denotes XPD
T782 4-11 VBZ denotes encodes
T783 12-15 CD denotes one
T784 16-18 IN denotes of
T785 19-22 DT denotes the
T787 23-26 CD denotes two
T788 27-35 NN denotes helicase
T786 36-46 NNS denotes components
T789 47-49 IN denotes of
T790 50-55 JJ denotes basal
T792 56-69 NN denotes transcription
T793 69-70 HYPH denotes /
T794 70-73 NN denotes DNA
T795 74-80 NN denotes repair
T796 81-87 NN denotes factor
T791 88-91 NN denotes IIH
T797 92-93 -LRB- denotes (
T798 93-98 NN denotes TFIIH
T799 98-99 -RRB- denotes )
T800 99-101 , denotes ,
T801 101-102 DT denotes a
T803 103-106 CD denotes ten
T805 106-107 HYPH denotes -
T804 107-114 NN denotes subunit
T806 114-116 , denotes ,
T807 116-131 JJ denotes multifunctional
T802 132-139 NN denotes complex
T808 140-144 WDT denotes that
T809 145-147 VBZ denotes is
T810 148-157 JJ denotes essential
T811 158-161 IN denotes for
T812 162-170 JJ denotes multiple
T813 171-180 NNS denotes processes
T814 180-182 , denotes ,
T815 182-191 VBG denotes including
T816 192-197 JJ denotes basal
T818 198-211 NN denotes transcription
T817 212-222 NN denotes initiation
T819 223-226 CC denotes and
T820 227-230 NN denotes DNA
T822 231-237 NN denotes damage
T821 238-244 NN denotes repair
T823 245-248 IN denotes via
T824 249-252 DT denotes the
T826 253-263 NN denotes nucleotide
T828 264-272 NN denotes excision
T827 273-279 NN denotes repair
T829 280-281 -LRB- denotes (
T830 281-284 NN denotes NER
T831 284-285 -RRB- denotes )
T825 286-293 NN denotes pathway
T832 294-295 -LRB- denotes [
T834 295-296 CD denotes 6
T835 296-297 , denotes ,
T833 297-298 CD denotes 7
T836 298-299 -RRB- denotes ]
T837 299-300 . denotes .
T838 300-530 sentence denotes Alterations in XPD resulting in defective TFIIH function are associated with UV-sensitive, multisystem disorders including xeroderma pigmentosum (XP), XP combined with Cockayne syndrome (CS), and trichothiodystrophy (TTD) [8–10].
T839 301-312 NNS denotes Alterations
T841 313-315 IN denotes in
T842 316-319 NN denotes XPD
T843 320-329 VBG denotes resulting
T844 330-332 IN denotes in
T845 333-342 JJ denotes defective
T847 343-348 NN denotes TFIIH
T846 349-357 NN denotes function
T848 358-361 VBP denotes are
T840 362-372 VBN denotes associated
T849 373-377 IN denotes with
T850 378-380 NN denotes UV
T852 380-381 HYPH denotes -
T851 381-390 JJ denotes sensitive
T854 390-392 , denotes ,
T855 392-403 JJ denotes multisystem
T853 404-413 NNS denotes disorders
T856 414-423 VBG denotes including
T857 424-433 NN denotes xeroderma
T858 434-445 NN denotes pigmentosum
T859 446-447 -LRB- denotes (
T860 447-449 NN denotes XP
T861 449-450 -RRB- denotes )
T862 450-452 , denotes ,
T863 452-454 NN denotes XP
T864 455-463 VBN denotes combined
T865 464-468 IN denotes with
T866 469-477 NN denotes Cockayne
T867 478-486 NN denotes syndrome
T868 487-488 -LRB- denotes (
T869 488-490 NN denotes CS
T870 490-491 -RRB- denotes )
T871 491-493 , denotes ,
T872 493-496 CC denotes and
T873 497-516 NN denotes trichothiodystrophy
T874 517-518 -LRB- denotes (
T875 518-521 NN denotes TTD
T876 521-522 -RRB- denotes )
T877 523-524 -LRB- denotes [
T878 524-525 CD denotes 8
T879 525-526 SYM denotes
T880 526-528 CD denotes 10
T881 528-529 -RRB- denotes ]
T882 529-530 . denotes .
T883 530-642 sentence denotes XP is marked by sun-induced pigmentation anomalies and a greater than 1,000-fold elevation in skin cancer risk.
T884 531-533 NN denotes XP
T886 534-536 VBZ denotes is
T885 537-543 VBN denotes marked
T887 544-546 IN denotes by
T888 547-550 NN denotes sun
T890 550-551 HYPH denotes -
T889 551-558 VBN denotes induced
T892 559-571 NN denotes pigmentation
T891 572-581 NNS denotes anomalies
T893 582-585 CC denotes and
T894 586-587 DT denotes a
T896 588-595 JJR denotes greater
T898 596-600 IN denotes than
T897 601-606 CD denotes 1,000
T900 606-607 HYPH denotes -
T899 607-611 RB denotes fold
T895 612-621 NN denotes elevation
T901 622-624 IN denotes in
T902 625-629 NN denotes skin
T903 630-636 NN denotes cancer
T904 637-641 NN denotes risk
T905 641-642 . denotes .
T906 642-732 sentence denotes Severe cases can also present with growth retardation and primary neurodegeneration [11].
T907 643-649 JJ denotes Severe
T908 650-655 NNS denotes cases
T910 656-659 MD denotes can
T911 660-664 RB denotes also
T909 665-672 VB denotes present
T912 673-677 IN denotes with
T913 678-684 NN denotes growth
T914 685-696 NN denotes retardation
T915 697-700 CC denotes and
T916 701-708 JJ denotes primary
T917 709-726 NN denotes neurodegeneration
T918 727-728 -LRB- denotes [
T919 728-730 CD denotes 11
T920 730-731 -RRB- denotes ]
T921 731-732 . denotes .
T922 732-967 sentence denotes CS and TTD, on the other hand, are segmental progeroid disorders characterised by progressive post-natal growth failure and primary demyelination resulting in severe neurodysfunction, but without a clear cancer predisposition [12–15].
T923 733-735 NN denotes CS
T925 736-739 CC denotes and
T926 740-743 NN denotes TTD
T927 743-745 , denotes ,
T928 745-747 IN denotes on
T929 748-751 DT denotes the
T931 752-757 JJ denotes other
T930 758-762 NN denotes hand
T932 762-764 , denotes ,
T924 764-767 VBP denotes are
T933 768-777 JJ denotes segmental
T935 778-787 JJ denotes progeroid
T934 788-797 NNS denotes disorders
T936 798-811 VBN denotes characterised
T937 812-814 IN denotes by
T938 815-826 JJ denotes progressive
T940 827-837 JJ denotes post-natal
T941 838-844 NN denotes growth
T939 845-852 NN denotes failure
T942 853-856 CC denotes and
T943 857-864 JJ denotes primary
T944 865-878 NN denotes demyelination
T945 879-888 VBG denotes resulting
T946 889-891 IN denotes in
T947 892-898 JJ denotes severe
T948 899-915 NN denotes neurodysfunction
T949 915-917 , denotes ,
T950 917-920 CC denotes but
T951 921-928 IN denotes without
T952 929-930 DT denotes a
T954 931-936 JJ denotes clear
T955 937-943 NN denotes cancer
T953 944-958 NN denotes predisposition
T956 959-960 -LRB- denotes [
T957 960-962 CD denotes 12
T958 962-963 SYM denotes
T959 963-965 CD denotes 15
T960 965-966 -RRB- denotes ]
T961 966-967 . denotes .
T962 967-1155 sentence denotes Patients with TTD additionally display hallmark sulphur-deficient brittle hair and nails and scaling skin [13], resulting from a basal transcription defect in specific cell types [16,17].
T963 968-976 NNS denotes Patients
T965 977-981 IN denotes with
T966 982-985 NN denotes TTD
T967 986-998 RB denotes additionally
T964 999-1006 VBP denotes display
T968 1007-1015 NN denotes hallmark
T970 1016-1023 NN denotes sulphur
T972 1023-1024 HYPH denotes -
T971 1024-1033 JJ denotes deficient
T973 1034-1041 JJ denotes brittle
T969 1042-1046 NN denotes hair
T974 1047-1050 CC denotes and
T975 1051-1056 NNS denotes nails
T976 1057-1060 CC denotes and
T977 1061-1068 JJ denotes scaling
T978 1069-1073 NN denotes skin
T979 1074-1075 -LRB- denotes [
T980 1075-1077 CD denotes 13
T981 1077-1078 -RRB- denotes ]
T982 1078-1080 , denotes ,
T983 1080-1089 VBG denotes resulting
T984 1090-1094 IN denotes from
T985 1095-1096 DT denotes a
T987 1097-1102 JJ denotes basal
T988 1103-1116 NN denotes transcription
T986 1117-1123 NN denotes defect
T989 1124-1126 IN denotes in
T990 1127-1135 JJ denotes specific
T992 1136-1140 NN denotes cell
T991 1141-1146 NNS denotes types
T993 1147-1148 -LRB- denotes [
T995 1148-1150 CD denotes 16
T996 1150-1151 , denotes ,
T994 1151-1153 CD denotes 17
T997 1153-1154 -RRB- denotes ]
T998 1154-1155 . denotes .
T999 1155-1321 sentence denotes A related disorder with the cancer predisposition of XP combined with the neurodevelopmental complications of CS (XPCS), although rare, has also been described [18].
T1000 1156-1157 DT denotes A
T1002 1158-1165 JJ denotes related
T1001 1166-1174 NN denotes disorder
T1004 1175-1179 IN denotes with
T1005 1180-1183 DT denotes the
T1007 1184-1190 NN denotes cancer
T1006 1191-1205 NN denotes predisposition
T1008 1206-1208 IN denotes of
T1009 1209-1211 NN denotes XP
T1010 1212-1220 VBN denotes combined
T1011 1221-1225 IN denotes with
T1012 1226-1229 DT denotes the
T1014 1230-1248 JJ denotes neurodevelopmental
T1013 1249-1262 NNS denotes complications
T1015 1263-1265 IN denotes of
T1016 1266-1268 NN denotes CS
T1017 1269-1270 -LRB- denotes (
T1018 1270-1274 NN denotes XPCS
T1019 1274-1275 -RRB- denotes )
T1020 1275-1277 , denotes ,
T1021 1277-1285 IN denotes although
T1022 1286-1290 JJ denotes rare
T1023 1290-1292 , denotes ,
T1024 1292-1295 VBZ denotes has
T1025 1296-1300 RB denotes also
T1026 1301-1305 VBN denotes been
T1003 1306-1315 VBN denotes described
T1027 1316-1317 -LRB- denotes [
T1028 1317-1319 CD denotes 18
T1029 1319-1320 -RRB- denotes ]
T1030 1320-1321 . denotes .
R450 T781 T782 nsubj XPD,encodes
R451 T783 T782 dobj one,encodes
R452 T784 T783 prep of,one
R453 T785 T786 det the,components
R454 T786 T784 pobj components,of
R455 T787 T786 nummod two,components
R456 T788 T786 compound helicase,components
R457 T789 T786 prep of,components
R458 T790 T791 amod basal,IIH
R459 T791 T789 pobj IIH,of
R460 T792 T791 nmod transcription,IIH
R461 T793 T792 punct /,transcription
R462 T794 T795 compound DNA,repair
R463 T795 T792 appos repair,transcription
R464 T796 T791 compound factor,IIH
R465 T797 T791 punct (,IIH
R466 T798 T791 appos TFIIH,IIH
R467 T799 T783 punct ),one
R468 T800 T783 punct ", ",one
R469 T801 T802 det a,complex
R470 T802 T783 appos complex,one
R471 T803 T804 nummod ten,subunit
R472 T804 T802 nmod subunit,complex
R473 T805 T804 punct -,subunit
R474 T806 T802 punct ", ",complex
R475 T807 T802 amod multifunctional,complex
R476 T808 T809 dep that,is
R477 T809 T802 relcl is,complex
R478 T810 T809 acomp essential,is
R479 T811 T810 prep for,essential
R480 T812 T813 amod multiple,processes
R481 T813 T811 pobj processes,for
R482 T814 T813 punct ", ",processes
R483 T815 T813 prep including,processes
R484 T816 T817 amod basal,initiation
R485 T817 T815 pobj initiation,including
R486 T818 T817 compound transcription,initiation
R487 T819 T817 cc and,initiation
R488 T820 T821 compound DNA,repair
R489 T821 T817 conj repair,initiation
R490 T822 T821 compound damage,repair
R491 T823 T821 prep via,repair
R492 T824 T825 det the,pathway
R493 T825 T823 pobj pathway,via
R494 T826 T827 nmod nucleotide,repair
R495 T827 T825 nmod repair,pathway
R496 T828 T827 nmod excision,repair
R497 T829 T827 punct (,repair
R498 T830 T827 appos NER,repair
R499 T831 T825 punct ),pathway
R500 T832 T833 punct [,7
R501 T833 T783 parataxis 7,one
R502 T834 T833 nummod 6,7
R503 T835 T833 punct ",",7
R504 T836 T833 punct ],7
R505 T837 T782 punct .,encodes
R506 T839 T840 nsubjpass Alterations,associated
R507 T841 T839 prep in,Alterations
R508 T842 T841 pobj XPD,in
R509 T843 T839 acl resulting,Alterations
R510 T844 T843 prep in,resulting
R511 T845 T846 amod defective,function
R512 T846 T844 pobj function,in
R513 T847 T846 compound TFIIH,function
R514 T848 T840 auxpass are,associated
R515 T849 T840 prep with,associated
R516 T850 T851 npadvmod UV,sensitive
R517 T851 T853 amod sensitive,disorders
R518 T852 T851 punct -,sensitive
R519 T853 T849 pobj disorders,with
R520 T854 T853 punct ", ",disorders
R521 T855 T853 amod multisystem,disorders
R522 T856 T853 prep including,disorders
R523 T857 T858 compound xeroderma,pigmentosum
R524 T858 T856 pobj pigmentosum,including
R525 T859 T858 punct (,pigmentosum
R526 T860 T858 appos XP,pigmentosum
R527 T861 T858 punct ),pigmentosum
R528 T862 T858 punct ", ",pigmentosum
R529 T863 T858 conj XP,pigmentosum
R530 T864 T863 acl combined,XP
R531 T865 T864 prep with,combined
R532 T866 T867 compound Cockayne,syndrome
R533 T867 T865 pobj syndrome,with
R534 T868 T867 punct (,syndrome
R535 T869 T867 appos CS,syndrome
R536 T870 T863 punct ),XP
R537 T871 T863 punct ", ",XP
R538 T872 T863 cc and,XP
R539 T873 T863 conj trichothiodystrophy,XP
R540 T874 T873 punct (,trichothiodystrophy
R541 T875 T873 appos TTD,trichothiodystrophy
R542 T876 T840 punct ),associated
R543 T877 T878 punct [,8
R544 T878 T840 parataxis 8,associated
R545 T879 T880 punct –,10
R546 T880 T878 prep 10,8
R547 T881 T878 punct ],8
R548 T882 T840 punct .,associated
R549 T884 T885 nsubjpass XP,marked
R550 T886 T885 auxpass is,marked
R551 T887 T885 agent by,marked
R552 T888 T889 npadvmod sun,induced
R553 T889 T891 amod induced,anomalies
R554 T890 T889 punct -,induced
R555 T891 T887 pobj anomalies,by
R556 T892 T891 compound pigmentation,anomalies
R557 T893 T891 cc and,anomalies
R558 T894 T895 det a,elevation
R559 T895 T891 conj elevation,anomalies
R560 T896 T897 amod greater,"1,000"
R561 T897 T899 quantmod "1,000",fold
R562 T898 T897 quantmod than,"1,000"
R563 T899 T895 nummod fold,elevation
R564 T900 T899 punct -,fold
R565 T901 T895 prep in,elevation
R566 T902 T903 compound skin,cancer
R567 T903 T904 compound cancer,risk
R568 T904 T901 pobj risk,in
R569 T905 T885 punct .,marked
R570 T907 T908 amod Severe,cases
R571 T908 T909 nsubj cases,present
R572 T910 T909 aux can,present
R573 T911 T909 advmod also,present
R574 T912 T909 prep with,present
R575 T913 T914 compound growth,retardation
R576 T914 T912 pobj retardation,with
R577 T915 T914 cc and,retardation
R578 T916 T917 amod primary,neurodegeneration
R579 T917 T914 conj neurodegeneration,retardation
R580 T918 T919 punct [,11
R581 T919 T909 parataxis 11,present
R582 T920 T919 punct ],11
R583 T921 T909 punct .,present
R584 T923 T924 nsubj CS,are
R585 T925 T923 cc and,CS
R586 T926 T923 conj TTD,CS
R587 T927 T924 punct ", ",are
R588 T928 T924 prep on,are
R589 T929 T930 det the,hand
R590 T930 T928 pobj hand,on
R591 T931 T930 amod other,hand
R592 T932 T924 punct ", ",are
R593 T933 T934 amod segmental,disorders
R594 T934 T924 attr disorders,are
R595 T935 T934 amod progeroid,disorders
R596 T936 T934 acl characterised,disorders
R597 T937 T936 agent by,characterised
R598 T938 T939 amod progressive,failure
R599 T939 T937 pobj failure,by
R600 T940 T939 amod post-natal,failure
R601 T941 T939 compound growth,failure
R602 T942 T939 cc and,failure
R603 T943 T944 amod primary,demyelination
R604 T944 T939 conj demyelination,failure
R605 T945 T944 acl resulting,demyelination
R606 T946 T945 prep in,resulting
R607 T947 T948 amod severe,neurodysfunction
R608 T948 T946 pobj neurodysfunction,in
R609 T949 T924 punct ", ",are
R610 T950 T951 cc but,without
R611 T951 T924 prep without,are
R612 T952 T953 det a,predisposition
R613 T953 T951 pobj predisposition,without
R614 T954 T953 amod clear,predisposition
R615 T955 T953 compound cancer,predisposition
R616 T956 T957 punct [,12
R617 T957 T924 parataxis 12,are
R618 T958 T959 punct –,15
R619 T959 T957 prep 15,12
R620 T960 T957 punct ],12
R621 T961 T924 punct .,are
R622 T963 T964 nsubj Patients,display
R623 T965 T963 prep with,Patients
R624 T966 T965 pobj TTD,with
R625 T967 T964 advmod additionally,display
R626 T968 T969 nmod hallmark,hair
R627 T969 T964 dobj hair,display
R628 T970 T971 npadvmod sulphur,deficient
R629 T971 T969 amod deficient,hair
R630 T972 T971 punct -,deficient
R631 T973 T969 amod brittle,hair
R632 T974 T969 cc and,hair
R633 T975 T969 conj nails,hair
R634 T976 T969 cc and,hair
R635 T977 T978 amod scaling,skin
R636 T978 T969 conj skin,hair
R637 T979 T980 punct [,13
R638 T980 T969 parataxis 13,hair
R639 T981 T980 punct ],13
R640 T982 T969 punct ", ",hair
R641 T983 T969 acl resulting,hair
R642 T984 T983 prep from,resulting
R643 T985 T986 det a,defect
R644 T986 T984 pobj defect,from
R645 T987 T986 amod basal,defect
R646 T988 T986 compound transcription,defect
R647 T989 T986 prep in,defect
R648 T990 T991 amod specific,types
R649 T991 T989 pobj types,in
R650 T992 T991 compound cell,types
R651 T993 T994 punct [,17
R652 T994 T964 parataxis 17,display
R653 T995 T994 nummod 16,17
R654 T996 T994 punct ",",17
R655 T997 T994 punct ],17
R656 T998 T964 punct .,display
R657 T1000 T1001 det A,disorder
R658 T1001 T1003 nsubjpass disorder,described
R659 T1002 T1001 amod related,disorder
R660 T1004 T1001 prep with,disorder
R661 T1005 T1006 det the,predisposition
R662 T1006 T1004 pobj predisposition,with
R663 T1007 T1006 compound cancer,predisposition
R664 T1008 T1006 prep of,predisposition
R665 T1009 T1008 pobj XP,of
R666 T1010 T1006 acl combined,predisposition
R667 T1011 T1010 prep with,combined
R668 T1012 T1013 det the,complications
R669 T1013 T1011 pobj complications,with
R670 T1014 T1013 amod neurodevelopmental,complications
R671 T1015 T1013 prep of,complications
R672 T1016 T1015 pobj CS,of
R673 T1017 T1018 punct (,XPCS
R674 T1018 T1016 parataxis XPCS,CS
R675 T1019 T1018 punct ),XPCS
R676 T1020 T1003 punct ", ",described
R677 T1021 T1022 mark although,rare
R678 T1022 T1003 advcl rare,described
R679 T1023 T1003 punct ", ",described
R680 T1024 T1003 aux has,described
R681 T1025 T1003 advmod also,described
R682 T1026 T1003 auxpass been,described
R683 T1027 T1028 punct [,18
R684 T1028 T1003 parataxis 18,described
R685 T1029 T1028 punct ],18
R686 T1030 T1003 punct .,described