PMC:1584416 / 20580-21234 4 Projects
Annnotations
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8833 | 0-1 | -LRB- | denotes | ( |
| T8834 | 1-2 | LS | denotes | D |
| T8836 | 2-3 | -RRB- | denotes | ) |
| T8837 | 4-12 | NN | denotes | Incision |
| T8839 | 12-13 | HYPH | denotes | / |
| T8838 | 13-21 | NN | denotes | excision |
| T8835 | 22-30 | NN | denotes | activity |
| T8840 | 31-33 | IN | denotes | of |
| T8841 | 34-46 | NNS | denotes | combinations |
| T8842 | 47-49 | IN | denotes | of |
| T8843 | 50-57 | VBN | denotes | altered |
| T8845 | 58-63 | NN | denotes | TFIIH |
| T8844 | 64-73 | NNS | denotes | complexes |
| T8846 | 74-76 | IN | denotes | in |
| T8847 | 77-78 | DT | denotes | a |
| T8849 | 79-92 | VBN | denotes | reconstituted |
| T8850 | 93-96 | NN | denotes | NER |
| T8848 | 97-105 | NN | denotes | reaction |
| T8851 | 105-106 | . | denotes | . |
| T8852 | 106-360 | sentence | denotes | Equal amounts of single or mixed populations of recombinant TFIIHs (containing XPD, XPB, p62, p52, His-p44, Flag-p34, cdk7, cyclin H, Mat1, and p8) were mixed with recombinant XPG, XPF/ERCC1, XPC/hHR23B, RPA, and a radiolabelled synthetic NER substrate. |
| T8853 | 107-112 | JJ | denotes | Equal |
| T8854 | 113-120 | NNS | denotes | amounts |
| T8856 | 121-123 | IN | denotes | of |
| T8857 | 124-130 | JJ | denotes | single |
| T8859 | 131-133 | CC | denotes | or |
| T8860 | 134-139 | JJ | denotes | mixed |
| T8858 | 140-151 | NNS | denotes | populations |
| T8861 | 152-154 | IN | denotes | of |
| T8862 | 155-166 | JJ | denotes | recombinant |
| T8863 | 167-173 | NNS | denotes | TFIIHs |
| T8864 | 174-175 | -LRB- | denotes | ( |
| T8865 | 175-185 | VBG | denotes | containing |
| T8866 | 186-189 | NN | denotes | XPD |
| T8867 | 189-191 | , | denotes | , |
| T8868 | 191-194 | NN | denotes | XPB |
| T8869 | 194-196 | , | denotes | , |
| T8870 | 196-199 | NN | denotes | p62 |
| T8871 | 199-201 | , | denotes | , |
| T8872 | 201-204 | NN | denotes | p52 |
| T8873 | 204-206 | , | denotes | , |
| T8874 | 206-209 | NN | denotes | His |
| T8876 | 209-210 | HYPH | denotes | - |
| T8875 | 210-213 | NN | denotes | p44 |
| T8877 | 213-215 | , | denotes | , |
| T8878 | 215-219 | NN | denotes | Flag |
| T8880 | 219-220 | HYPH | denotes | - |
| T8879 | 220-223 | NN | denotes | p34 |
| T8881 | 223-225 | , | denotes | , |
| T8882 | 225-229 | NN | denotes | cdk7 |
| T8883 | 229-231 | , | denotes | , |
| T8884 | 231-237 | NN | denotes | cyclin |
| T8885 | 238-239 | NN | denotes | H |
| T8886 | 239-241 | , | denotes | , |
| T8887 | 241-245 | NN | denotes | Mat1 |
| T8888 | 245-247 | , | denotes | , |
| T8889 | 247-250 | CC | denotes | and |
| T8890 | 251-253 | NN | denotes | p8 |
| T8891 | 253-254 | -RRB- | denotes | ) |
| T8892 | 255-259 | VBD | denotes | were |
| T8855 | 260-265 | VBN | denotes | mixed |
| T8893 | 266-270 | IN | denotes | with |
| T8894 | 271-282 | JJ | denotes | recombinant |
| T8895 | 283-286 | NN | denotes | XPG |
| T8896 | 286-288 | , | denotes | , |
| T8897 | 288-291 | NN | denotes | XPF |
| T8899 | 291-292 | HYPH | denotes | / |
| T8898 | 292-297 | NN | denotes | ERCC1 |
| T8900 | 297-299 | , | denotes | , |
| T8901 | 299-302 | NN | denotes | XPC |
| T8903 | 302-303 | HYPH | denotes | / |
| T8902 | 303-309 | NN | denotes | hHR23B |
| T8904 | 309-311 | , | denotes | , |
| T8905 | 311-314 | NN | denotes | RPA |
| T8906 | 314-316 | , | denotes | , |
| T8907 | 316-319 | CC | denotes | and |
| T8908 | 320-321 | DT | denotes | a |
| T8910 | 322-335 | VBN | denotes | radiolabelled |
| T8911 | 336-345 | JJ | denotes | synthetic |
| T8912 | 346-349 | NN | denotes | NER |
| T8909 | 350-359 | NN | denotes | substrate |
| T8913 | 359-360 | . | denotes | . |
| T8914 | 360-503 | sentence | denotes | The excision products (26–34 nucleotides in length) were visualised at nucleotide resolution on a denaturing polyacrylamide gel as indicated . |
| T8915 | 361-364 | DT | denotes | The |
| T8917 | 365-373 | NN | denotes | excision |
| T8916 | 374-382 | NNS | denotes | products |
| T8919 | 383-384 | -LRB- | denotes | ( |
| T8921 | 384-386 | CD | denotes | 26 |
| T8923 | 386-387 | SYM | denotes | – |
| T8922 | 387-389 | CD | denotes | 34 |
| T8920 | 390-401 | NNS | denotes | nucleotides |
| T8924 | 402-404 | IN | denotes | in |
| T8925 | 405-411 | NN | denotes | length |
| T8926 | 411-412 | -RRB- | denotes | ) |
| T8927 | 413-417 | VBD | denotes | were |
| T8918 | 418-428 | VBN | denotes | visualised |
| T8928 | 429-431 | IN | denotes | at |
| T8929 | 432-442 | NN | denotes | nucleotide |
| T8930 | 443-453 | NN | denotes | resolution |
| T8931 | 454-456 | IN | denotes | on |
| T8932 | 457-458 | DT | denotes | a |
| T8934 | 459-469 | VBG | denotes | denaturing |
| T8935 | 470-484 | NN | denotes | polyacrylamide |
| T8933 | 485-488 | NN | denotes | gel |
| T8936 | 489-491 | IN | denotes | as |
| T8937 | 492-501 | VBN | denotes | indicated |
| T8938 | 502-503 | . | denotes | . |
| T8939 | 503-654 | sentence | denotes | Note the weak activity corresponding to each single and combined TFIIH complex (lanes 3–8) relative to the wt (lane 1) and negative controls (lane 2). |
| T8940 | 504-508 | VB | denotes | Note |
| T8941 | 509-512 | DT | denotes | the |
| T8943 | 513-517 | JJ | denotes | weak |
| T8942 | 518-526 | NN | denotes | activity |
| T8944 | 527-540 | VBG | denotes | corresponding |
| T8945 | 541-543 | IN | denotes | to |
| T8946 | 544-548 | DT | denotes | each |
| T8948 | 549-555 | JJ | denotes | single |
| T8949 | 556-559 | CC | denotes | and |
| T8950 | 560-568 | VBN | denotes | combined |
| T8951 | 569-574 | NN | denotes | TFIIH |
| T8947 | 575-582 | NN | denotes | complex |
| T8952 | 583-584 | -LRB- | denotes | ( |
| T8954 | 584-589 | NNS | denotes | lanes |
| T8953 | 590-591 | CD | denotes | 3 |
| T8955 | 591-592 | SYM | denotes | – |
| T8956 | 592-593 | CD | denotes | 8 |
| T8957 | 593-594 | -RRB- | denotes | ) |
| T8958 | 595-603 | JJ | denotes | relative |
| T8959 | 604-606 | IN | denotes | to |
| T8960 | 607-610 | DT | denotes | the |
| T8961 | 611-613 | NN | denotes | wt |
| T8962 | 614-615 | -LRB- | denotes | ( |
| T8963 | 615-619 | NN | denotes | lane |
| T8964 | 620-621 | CD | denotes | 1 |
| T8965 | 621-622 | -RRB- | denotes | ) |
| T8966 | 623-626 | CC | denotes | and |
| T8967 | 627-635 | JJ | denotes | negative |
| T8968 | 636-644 | NNS | denotes | controls |
| T8969 | 645-646 | -LRB- | denotes | ( |
| T8970 | 646-650 | NN | denotes | lane |
| T8971 | 651-652 | CD | denotes | 2 |
| T8972 | 652-653 | -RRB- | denotes | ) |
| T8973 | 653-654 | . | denotes | . |
| R5954 | T8833 | T8834 | punct | (,D |
| R5955 | T8834 | T8835 | meta | D,activity |
| R5956 | T8836 | T8834 | punct | ),D |
| R5957 | T8837 | T8838 | compound | Incision,excision |
| R5958 | T8838 | T8835 | compound | excision,activity |
| R5959 | T8839 | T8838 | punct | /,excision |
| R5960 | T8840 | T8835 | prep | of,activity |
| R5961 | T8841 | T8840 | pobj | combinations,of |
| R5962 | T8842 | T8841 | prep | of,combinations |
| R5963 | T8843 | T8844 | amod | altered,complexes |
| R5964 | T8844 | T8842 | pobj | complexes,of |
| R5965 | T8845 | T8844 | compound | TFIIH,complexes |
| R5966 | T8846 | T8844 | prep | in,complexes |
| R5967 | T8847 | T8848 | det | a,reaction |
| R5968 | T8848 | T8846 | pobj | reaction,in |
| R5969 | T8849 | T8848 | amod | reconstituted,reaction |
| R5970 | T8850 | T8848 | compound | NER,reaction |
| R5971 | T8851 | T8835 | punct | .,activity |
| R5972 | T8853 | T8854 | amod | Equal,amounts |
| R5973 | T8854 | T8855 | nsubjpass | amounts,mixed |
| R5974 | T8856 | T8854 | prep | of,amounts |
| R5975 | T8857 | T8858 | amod | single,populations |
| R5976 | T8858 | T8856 | pobj | populations,of |
| R5977 | T8859 | T8857 | cc | or,single |
| R5978 | T8860 | T8857 | conj | mixed,single |
| R5979 | T8861 | T8858 | prep | of,populations |
| R5980 | T8862 | T8863 | amod | recombinant,TFIIHs |
| R5981 | T8863 | T8861 | pobj | TFIIHs,of |
| R5982 | T8864 | T8858 | punct | (,populations |
| R5983 | T8865 | T8858 | acl | containing,populations |
| R5984 | T8866 | T8865 | dobj | XPD,containing |
| R5985 | T8867 | T8866 | punct | ", ",XPD |
| R5986 | T8868 | T8866 | conj | XPB,XPD |
| R5987 | T8869 | T8868 | punct | ", ",XPB |
| R5988 | T8870 | T8868 | conj | p62,XPB |
| R5989 | T8871 | T8870 | punct | ", ",p62 |
| R5990 | T8872 | T8870 | conj | p52,p62 |
| R5991 | T8873 | T8872 | punct | ", ",p52 |
| R5992 | T8874 | T8875 | compound | His,p44 |
| R5993 | T8875 | T8872 | conj | p44,p52 |
| R5994 | T8876 | T8875 | punct | -,p44 |
| R5995 | T8877 | T8875 | punct | ", ",p44 |
| R5996 | T8878 | T8879 | compound | Flag,p34 |
| R5997 | T8879 | T8875 | conj | p34,p44 |
| R5998 | T8880 | T8879 | punct | -,p34 |
| R5999 | T8881 | T8879 | punct | ", ",p34 |
| R6000 | T8882 | T8879 | conj | cdk7,p34 |
| R6001 | T8883 | T8882 | punct | ", ",cdk7 |
| R6002 | T8884 | T8885 | compound | cyclin,H |
| R6003 | T8885 | T8882 | conj | H,cdk7 |
| R6004 | T8886 | T8885 | punct | ", ",H |
| R6005 | T8887 | T8885 | conj | Mat1,H |
| R6006 | T8888 | T8887 | punct | ", ",Mat1 |
| R6007 | T8889 | T8887 | cc | and,Mat1 |
| R6008 | T8890 | T8887 | conj | p8,Mat1 |
| R6009 | T8891 | T8855 | punct | ),mixed |
| R6010 | T8892 | T8855 | auxpass | were,mixed |
| R6011 | T8893 | T8855 | prep | with,mixed |
| R6012 | T8894 | T8895 | amod | recombinant,XPG |
| R6013 | T8895 | T8893 | pobj | XPG,with |
| R6014 | T8896 | T8895 | punct | ", ",XPG |
| R6015 | T8897 | T8898 | compound | XPF,ERCC1 |
| R6016 | T8898 | T8895 | appos | ERCC1,XPG |
| R6017 | T8899 | T8898 | punct | /,ERCC1 |
| R6018 | T8900 | T8895 | punct | ", ",XPG |
| R6019 | T8901 | T8902 | compound | XPC,hHR23B |
| R6020 | T8902 | T8895 | appos | hHR23B,XPG |
| R6021 | T8903 | T8902 | punct | /,hHR23B |
| R6022 | T8904 | T8895 | punct | ", ",XPG |
| R6023 | T8905 | T8895 | appos | RPA,XPG |
| R6024 | T8906 | T8895 | punct | ", ",XPG |
| R6025 | T8907 | T8895 | cc | and,XPG |
| R6026 | T8908 | T8909 | det | a,substrate |
| R6027 | T8909 | T8895 | conj | substrate,XPG |
| R6028 | T8910 | T8909 | amod | radiolabelled,substrate |
| R6029 | T8911 | T8909 | amod | synthetic,substrate |
| R6030 | T8912 | T8909 | compound | NER,substrate |
| R6031 | T8913 | T8855 | punct | .,mixed |
| R6032 | T8915 | T8916 | det | The,products |
| R6033 | T8916 | T8918 | nsubjpass | products,visualised |
| R6034 | T8917 | T8916 | compound | excision,products |
| R6035 | T8919 | T8920 | punct | (,nucleotides |
| R6036 | T8920 | T8916 | parataxis | nucleotides,products |
| R6037 | T8921 | T8922 | quantmod | 26,34 |
| R6038 | T8922 | T8920 | nummod | 34,nucleotides |
| R6039 | T8923 | T8922 | punct | –,34 |
| R6040 | T8924 | T8920 | prep | in,nucleotides |
| R6041 | T8925 | T8924 | pobj | length,in |
| R6042 | T8926 | T8920 | punct | ),nucleotides |
| R6043 | T8927 | T8918 | auxpass | were,visualised |
| R6044 | T8928 | T8918 | prep | at,visualised |
| R6045 | T8929 | T8930 | compound | nucleotide,resolution |
| R6046 | T8930 | T8928 | pobj | resolution,at |
| R6047 | T8931 | T8918 | prep | on,visualised |
| R6048 | T8932 | T8933 | det | a,gel |
| R6049 | T8933 | T8931 | pobj | gel,on |
| R6050 | T8934 | T8933 | amod | denaturing,gel |
| R6051 | T8935 | T8933 | compound | polyacrylamide,gel |
| R6052 | T8936 | T8937 | mark | as,indicated |
| R6053 | T8937 | T8918 | advcl | indicated,visualised |
| R6054 | T8938 | T8918 | punct | .,visualised |
| R6055 | T8941 | T8942 | det | the,activity |
| R6056 | T8942 | T8940 | dobj | activity,Note |
| R6057 | T8943 | T8942 | amod | weak,activity |
| R6058 | T8944 | T8942 | acl | corresponding,activity |
| R6059 | T8945 | T8944 | prep | to,corresponding |
| R6060 | T8946 | T8947 | det | each,complex |
| R6061 | T8947 | T8945 | pobj | complex,to |
| R6062 | T8948 | T8947 | amod | single,complex |
| R6063 | T8949 | T8948 | cc | and,single |
| R6064 | T8950 | T8948 | conj | combined,single |
| R6065 | T8951 | T8947 | compound | TFIIH,complex |
| R6066 | T8952 | T8953 | punct | (,3 |
| R6067 | T8953 | T8947 | parataxis | 3,complex |
| R6068 | T8954 | T8953 | nmod | lanes,3 |
| R6069 | T8955 | T8956 | punct | –,8 |
| R6070 | T8956 | T8953 | prep | 8,3 |
| R6071 | T8957 | T8953 | punct | ),3 |
| R6072 | T8958 | T8944 | advcl | relative,corresponding |
| R6073 | T8959 | T8958 | prep | to,relative |
| R6074 | T8960 | T8961 | det | the,wt |
| R6075 | T8961 | T8959 | pobj | wt,to |
| R6076 | T8962 | T8963 | punct | (,lane |
| R6077 | T8963 | T8961 | parataxis | lane,wt |
| R6078 | T8964 | T8963 | nummod | 1,lane |
| R6079 | T8965 | T8963 | punct | ),lane |
| R6080 | T8966 | T8961 | cc | and,wt |
| R6081 | T8967 | T8968 | amod | negative,controls |
| R6082 | T8968 | T8961 | conj | controls,wt |
| R6083 | T8969 | T8970 | punct | (,lane |
| R6084 | T8970 | T8968 | parataxis | lane,controls |
| R6085 | T8971 | T8970 | nummod | 2,lane |
| R6086 | T8972 | T8970 | punct | ),lane |
| R6087 | T8973 | T8940 | punct | .,Note |