Id |
Subject |
Object |
Predicate |
Lexical cue |
T2973 |
0-4 |
RB |
denotes |
Here |
T2975 |
5-7 |
PRP |
denotes |
we |
T2974 |
8-14 |
VBP |
denotes |
report |
T2976 |
15-17 |
DT |
denotes |
an |
T2977 |
18-26 |
NN |
denotes |
approach |
T2978 |
27-31 |
WDT |
denotes |
that |
T2979 |
32-39 |
VBZ |
denotes |
enables |
T2980 |
40-46 |
RB |
denotes |
highly |
T2981 |
47-56 |
JJ |
denotes |
efficient |
T2982 |
57-66 |
NN |
denotes |
targeting |
T2983 |
67-69 |
IN |
denotes |
at |
T2984 |
70-73 |
DT |
denotes |
the |
T2986 |
74-77 |
NN |
denotes |
p53 |
T2985 |
78-83 |
NN |
denotes |
locus |
T2987 |
84-86 |
IN |
denotes |
in |
T2988 |
87-91 |
CC |
denotes |
both |
T2990 |
92-94 |
NN |
denotes |
ES |
T2989 |
95-100 |
NNS |
denotes |
cells |
T2991 |
101-104 |
CC |
denotes |
and |
T2992 |
105-116 |
NNS |
denotes |
fibroblasts |
T2993 |
116-117 |
. |
denotes |
. |
T2994 |
117-413 |
sentence |
denotes |
Recombinase-Mediated Cassette Exchange (RMCE) approaches were developed to improve targeting efficiency using a two-step process: the gene of interest is first replaced by a selection cassette flanked by recombinase target sites (e.g. loxP sites for Cre recombinase, to create a ‘floxed’ locus). |
T2995 |
118-129 |
NN |
denotes |
Recombinase |
T2997 |
129-130 |
HYPH |
denotes |
- |
T2996 |
130-138 |
JJ |
denotes |
Mediated |
T2999 |
139-147 |
NNP |
denotes |
Cassette |
T2998 |
148-156 |
NNP |
denotes |
Exchange |
T3001 |
157-158 |
-LRB- |
denotes |
( |
T3002 |
158-162 |
NN |
denotes |
RMCE |
T3003 |
162-163 |
-RRB- |
denotes |
) |
T3000 |
164-174 |
NNS |
denotes |
approaches |
T3005 |
175-179 |
VBD |
denotes |
were |
T3004 |
180-189 |
VBN |
denotes |
developed |
T3007 |
190-192 |
TO |
denotes |
to |
T3008 |
193-200 |
VB |
denotes |
improve |
T3009 |
201-210 |
VBG |
denotes |
targeting |
T3010 |
211-221 |
NN |
denotes |
efficiency |
T3011 |
222-227 |
VBG |
denotes |
using |
T3012 |
228-229 |
DT |
denotes |
a |
T3014 |
230-233 |
CD |
denotes |
two |
T3016 |
233-234 |
HYPH |
denotes |
- |
T3015 |
234-238 |
NN |
denotes |
step |
T3013 |
239-246 |
NN |
denotes |
process |
T3017 |
246-248 |
: |
denotes |
: |
T3018 |
248-251 |
DT |
denotes |
the |
T3019 |
252-256 |
NN |
denotes |
gene |
T3020 |
257-259 |
IN |
denotes |
of |
T3021 |
260-268 |
NN |
denotes |
interest |
T3022 |
269-271 |
VBZ |
denotes |
is |
T3023 |
272-277 |
RB |
denotes |
first |
T3006 |
278-286 |
VBN |
denotes |
replaced |
T3024 |
287-289 |
IN |
denotes |
by |
T3025 |
290-291 |
DT |
denotes |
a |
T3027 |
292-301 |
NN |
denotes |
selection |
T3026 |
302-310 |
NN |
denotes |
cassette |
T3028 |
311-318 |
VBN |
denotes |
flanked |
T3029 |
319-321 |
IN |
denotes |
by |
T3030 |
322-333 |
NN |
denotes |
recombinase |
T3032 |
334-340 |
NN |
denotes |
target |
T3031 |
341-346 |
NNS |
denotes |
sites |
T3033 |
347-348 |
-LRB- |
denotes |
( |
T3035 |
348-352 |
FW |
denotes |
e.g. |
T3036 |
353-357 |
NN |
denotes |
loxP |
T3034 |
358-363 |
NNS |
denotes |
sites |
T3037 |
364-367 |
IN |
denotes |
for |
T3038 |
368-371 |
NN |
denotes |
Cre |
T3039 |
372-383 |
NN |
denotes |
recombinase |
T3040 |
383-385 |
, |
denotes |
, |
T3041 |
385-387 |
TO |
denotes |
to |
T3042 |
388-394 |
VB |
denotes |
create |
T3043 |
395-396 |
DT |
denotes |
a |
T3045 |
397-398 |
`` |
denotes |
‘ |
T3046 |
398-404 |
JJ |
denotes |
floxed |
T3047 |
404-405 |
'' |
denotes |
’ |
T3044 |
406-411 |
NN |
denotes |
locus |
T3048 |
411-412 |
-RRB- |
denotes |
) |
T3049 |
412-413 |
. |
denotes |
. |
T3050 |
413-573 |
sentence |
denotes |
Then, Cre-mediated recombination in the presence of a cassette containing a floxed mutant allele removes the resident sequence and inserts the mutant gene (7). |
T3051 |
414-418 |
RB |
denotes |
Then |
T3053 |
418-420 |
, |
denotes |
, |
T3054 |
420-423 |
NN |
denotes |
Cre |
T3056 |
423-424 |
HYPH |
denotes |
- |
T3055 |
424-432 |
JJ |
denotes |
mediated |
T3057 |
433-446 |
NN |
denotes |
recombination |
T3058 |
447-449 |
IN |
denotes |
in |
T3059 |
450-453 |
DT |
denotes |
the |
T3060 |
454-462 |
NN |
denotes |
presence |
T3061 |
463-465 |
IN |
denotes |
of |
T3062 |
466-467 |
DT |
denotes |
a |
T3063 |
468-476 |
NN |
denotes |
cassette |
T3064 |
477-487 |
VBG |
denotes |
containing |
T3065 |
488-489 |
DT |
denotes |
a |
T3067 |
490-496 |
VBN |
denotes |
floxed |
T3068 |
497-503 |
JJ |
denotes |
mutant |
T3066 |
504-510 |
NN |
denotes |
allele |
T3052 |
511-518 |
VBZ |
denotes |
removes |
T3069 |
519-522 |
DT |
denotes |
the |
T3071 |
523-531 |
JJ |
denotes |
resident |
T3070 |
532-540 |
NN |
denotes |
sequence |
T3072 |
541-544 |
CC |
denotes |
and |
T3073 |
545-552 |
VBZ |
denotes |
inserts |
T3074 |
553-556 |
DT |
denotes |
the |
T3076 |
557-563 |
JJ |
denotes |
mutant |
T3075 |
564-568 |
NN |
denotes |
gene |
T3077 |
569-570 |
-LRB- |
denotes |
( |
T3078 |
570-571 |
CD |
denotes |
7 |
T3079 |
571-572 |
-RRB- |
denotes |
) |
T3080 |
572-573 |
. |
denotes |
. |
T3081 |
573-682 |
sentence |
denotes |
Previously, technical difficulties have prevented RMCE from being applied routinely to generate mutant mice. |
T3082 |
574-584 |
RB |
denotes |
Previously |
T3084 |
584-586 |
, |
denotes |
, |
T3085 |
586-595 |
JJ |
denotes |
technical |
T3086 |
596-608 |
NNS |
denotes |
difficulties |
T3087 |
609-613 |
VBD |
denotes |
have |
T3083 |
614-623 |
VBN |
denotes |
prevented |
T3088 |
624-628 |
NN |
denotes |
RMCE |
T3089 |
629-633 |
IN |
denotes |
from |
T3090 |
634-639 |
VBG |
denotes |
being |
T3091 |
640-647 |
VBN |
denotes |
applied |
T3092 |
648-657 |
RB |
denotes |
routinely |
T3093 |
658-660 |
TO |
denotes |
to |
T3094 |
661-669 |
VB |
denotes |
generate |
T3095 |
670-676 |
JJ |
denotes |
mutant |
T3096 |
677-681 |
NNS |
denotes |
mice |
T3097 |
681-682 |
. |
denotes |
. |
T3098 |
682-828 |
sentence |
denotes |
For example, exchanges using cassettes with directly repeated loxP sites were inefficient because excisions dominated the intended exchanges (8). |
T3099 |
683-686 |
IN |
denotes |
For |
T3101 |
687-694 |
NN |
denotes |
example |
T3102 |
694-696 |
, |
denotes |
, |
T3103 |
696-705 |
NNS |
denotes |
exchanges |
T3104 |
706-711 |
VBG |
denotes |
using |
T3105 |
712-721 |
NNS |
denotes |
cassettes |
T3106 |
722-726 |
IN |
denotes |
with |
T3107 |
727-735 |
RB |
denotes |
directly |
T3108 |
736-744 |
VBN |
denotes |
repeated |
T3110 |
745-749 |
NN |
denotes |
loxP |
T3109 |
750-755 |
NNS |
denotes |
sites |
T3100 |
756-760 |
VBD |
denotes |
were |
T3111 |
761-772 |
JJ |
denotes |
inefficient |
T3112 |
773-780 |
IN |
denotes |
because |
T3114 |
781-790 |
NNS |
denotes |
excisions |
T3113 |
791-800 |
VBD |
denotes |
dominated |
T3115 |
801-804 |
DT |
denotes |
the |
T3117 |
805-813 |
VBN |
denotes |
intended |
T3116 |
814-823 |
NNS |
denotes |
exchanges |
T3118 |
824-825 |
-LRB- |
denotes |
( |
T3119 |
825-826 |
CD |
denotes |
8 |
T3120 |
826-827 |
-RRB- |
denotes |
) |
T3121 |
827-828 |
. |
denotes |
. |
T3122 |
828-1096 |
sentence |
denotes |
loxP sites with different sequences were generated to overcome this problem, but these sites also underwent intramolecular recombination, making RMCE efficient only if the replacement cassette contained a marker enabling selection of the desired recombinant (7,9–12). |
T3123 |
829-833 |
NN |
denotes |
loxP |
T3124 |
834-839 |
NNS |
denotes |
sites |
T3126 |
840-844 |
IN |
denotes |
with |
T3127 |
845-854 |
JJ |
denotes |
different |
T3128 |
855-864 |
NNS |
denotes |
sequences |
T3129 |
865-869 |
VBD |
denotes |
were |
T3125 |
870-879 |
VBN |
denotes |
generated |
T3130 |
880-882 |
TO |
denotes |
to |
T3131 |
883-891 |
VB |
denotes |
overcome |
T3132 |
892-896 |
DT |
denotes |
this |
T3133 |
897-904 |
NN |
denotes |
problem |
T3134 |
904-906 |
, |
denotes |
, |
T3135 |
906-909 |
CC |
denotes |
but |
T3136 |
910-915 |
DT |
denotes |
these |
T3137 |
916-921 |
NNS |
denotes |
sites |
T3139 |
922-926 |
RB |
denotes |
also |
T3138 |
927-936 |
VBD |
denotes |
underwent |
T3140 |
937-951 |
JJ |
denotes |
intramolecular |
T3141 |
952-965 |
NN |
denotes |
recombination |
T3142 |
965-967 |
, |
denotes |
, |
T3143 |
967-973 |
VBG |
denotes |
making |
T3144 |
974-978 |
NN |
denotes |
RMCE |
T3145 |
979-988 |
JJ |
denotes |
efficient |
T3146 |
989-993 |
RB |
denotes |
only |
T3148 |
994-996 |
IN |
denotes |
if |
T3149 |
997-1000 |
DT |
denotes |
the |
T3151 |
1001-1012 |
NN |
denotes |
replacement |
T3150 |
1013-1021 |
NN |
denotes |
cassette |
T3147 |
1022-1031 |
VBD |
denotes |
contained |
T3152 |
1032-1033 |
DT |
denotes |
a |
T3153 |
1034-1040 |
NN |
denotes |
marker |
T3154 |
1041-1049 |
VBG |
denotes |
enabling |
T3155 |
1050-1059 |
NN |
denotes |
selection |
T3156 |
1060-1062 |
IN |
denotes |
of |
T3157 |
1063-1066 |
DT |
denotes |
the |
T3159 |
1067-1074 |
VBN |
denotes |
desired |
T3158 |
1075-1086 |
JJ |
denotes |
recombinant |
T3160 |
1087-1088 |
-LRB- |
denotes |
( |
T3161 |
1088-1089 |
CD |
denotes |
7 |
T3162 |
1089-1090 |
, |
denotes |
, |
T3163 |
1090-1091 |
CD |
denotes |
9 |
T3164 |
1091-1092 |
SYM |
denotes |
– |
T3165 |
1092-1094 |
CD |
denotes |
12 |
T3166 |
1094-1095 |
-RRB- |
denotes |
) |
T3167 |
1095-1096 |
. |
denotes |
. |
T3168 |
1096-1252 |
sentence |
denotes |
However, interference resulting from expression of the selection marker and the endogenous gene (13) necessitates strategies to remove the selectable gene. |
T3169 |
1097-1104 |
RB |
denotes |
However |
T3171 |
1104-1106 |
, |
denotes |
, |
T3172 |
1106-1118 |
NN |
denotes |
interference |
T3173 |
1119-1128 |
VBG |
denotes |
resulting |
T3174 |
1129-1133 |
IN |
denotes |
from |
T3175 |
1134-1144 |
NN |
denotes |
expression |
T3176 |
1145-1147 |
IN |
denotes |
of |
T3177 |
1148-1151 |
DT |
denotes |
the |
T3179 |
1152-1161 |
NN |
denotes |
selection |
T3178 |
1162-1168 |
NN |
denotes |
marker |
T3180 |
1169-1172 |
CC |
denotes |
and |
T3181 |
1173-1176 |
DT |
denotes |
the |
T3183 |
1177-1187 |
JJ |
denotes |
endogenous |
T3182 |
1188-1192 |
NN |
denotes |
gene |
T3184 |
1193-1194 |
-LRB- |
denotes |
( |
T3185 |
1194-1196 |
CD |
denotes |
13 |
T3186 |
1196-1197 |
-RRB- |
denotes |
) |
T3170 |
1198-1210 |
VBZ |
denotes |
necessitates |
T3187 |
1211-1221 |
NNS |
denotes |
strategies |
T3188 |
1222-1224 |
TO |
denotes |
to |
T3189 |
1225-1231 |
VB |
denotes |
remove |
T3190 |
1232-1235 |
DT |
denotes |
the |
T3192 |
1236-1246 |
JJ |
denotes |
selectable |
T3191 |
1247-1251 |
NN |
denotes |
gene |
T3193 |
1251-1252 |
. |
denotes |
. |
T3194 |
1252-1596 |
sentence |
denotes |
Together, previous studies indicate that an optimal RMCE requires (i) inverted heterologous loxP sites diverging by at least 2 nt to maximize the efficiency of exchange and (ii) an expression cassette enabling both positive selection to identify the initial recombinant and then negative selection to obtain a ‘marker-free’ mutant allele (14). |
T3195 |
1253-1261 |
RB |
denotes |
Together |
T3197 |
1261-1263 |
, |
denotes |
, |
T3198 |
1263-1271 |
JJ |
denotes |
previous |
T3199 |
1272-1279 |
NNS |
denotes |
studies |
T3196 |
1280-1288 |
VBP |
denotes |
indicate |
T3200 |
1289-1293 |
IN |
denotes |
that |
T3202 |
1294-1296 |
DT |
denotes |
an |
T3204 |
1297-1304 |
JJ |
denotes |
optimal |
T3203 |
1305-1309 |
NN |
denotes |
RMCE |
T3201 |
1310-1318 |
VBZ |
denotes |
requires |
T3205 |
1319-1320 |
-LRB- |
denotes |
( |
T3206 |
1320-1321 |
LS |
denotes |
i |
T3208 |
1321-1322 |
-RRB- |
denotes |
) |
T3209 |
1323-1331 |
VBN |
denotes |
inverted |
T3210 |
1332-1344 |
JJ |
denotes |
heterologous |
T3211 |
1345-1349 |
NN |
denotes |
loxP |
T3207 |
1350-1355 |
NNS |
denotes |
sites |
T3212 |
1356-1365 |
VBG |
denotes |
diverging |
T3213 |
1366-1368 |
IN |
denotes |
by |
T3214 |
1369-1371 |
RB |
denotes |
at |
T3216 |
1372-1377 |
RBS |
denotes |
least |
T3215 |
1378-1379 |
CD |
denotes |
2 |
T3217 |
1380-1382 |
NN |
denotes |
nt |
T3218 |
1383-1385 |
TO |
denotes |
to |
T3219 |
1386-1394 |
VB |
denotes |
maximize |
T3220 |
1395-1398 |
DT |
denotes |
the |
T3221 |
1399-1409 |
NN |
denotes |
efficiency |
T3222 |
1410-1412 |
IN |
denotes |
of |
T3223 |
1413-1421 |
NN |
denotes |
exchange |
T3224 |
1422-1425 |
CC |
denotes |
and |
T3225 |
1426-1427 |
-LRB- |
denotes |
( |
T3226 |
1427-1429 |
LS |
denotes |
ii |
T3228 |
1429-1430 |
-RRB- |
denotes |
) |
T3229 |
1431-1433 |
DT |
denotes |
an |
T3230 |
1434-1444 |
NN |
denotes |
expression |
T3227 |
1445-1453 |
NN |
denotes |
cassette |
T3231 |
1454-1462 |
VBG |
denotes |
enabling |
T3232 |
1463-1467 |
CC |
denotes |
both |
T3234 |
1468-1476 |
JJ |
denotes |
positive |
T3233 |
1477-1486 |
NN |
denotes |
selection |
T3235 |
1487-1489 |
TO |
denotes |
to |
T3236 |
1490-1498 |
VB |
denotes |
identify |
T3237 |
1499-1502 |
DT |
denotes |
the |
T3239 |
1503-1510 |
JJ |
denotes |
initial |
T3238 |
1511-1522 |
JJ |
denotes |
recombinant |
T3240 |
1523-1526 |
CC |
denotes |
and |
T3241 |
1527-1531 |
RB |
denotes |
then |
T3243 |
1532-1540 |
JJ |
denotes |
negative |
T3242 |
1541-1550 |
NN |
denotes |
selection |
T3244 |
1551-1553 |
TO |
denotes |
to |
T3245 |
1554-1560 |
VB |
denotes |
obtain |
T3246 |
1561-1562 |
DT |
denotes |
a |
T3248 |
1563-1564 |
`` |
denotes |
‘ |
T3250 |
1564-1570 |
NN |
denotes |
marker |
T3251 |
1570-1571 |
HYPH |
denotes |
- |
T3249 |
1571-1575 |
JJ |
denotes |
free |
T3252 |
1575-1576 |
'' |
denotes |
’ |
T3253 |
1577-1583 |
JJ |
denotes |
mutant |
T3247 |
1584-1590 |
NN |
denotes |
allele |
T3254 |
1591-1592 |
-LRB- |
denotes |
( |
T3255 |
1592-1594 |
CD |
denotes |
14 |
T3256 |
1594-1595 |
-RRB- |
denotes |
) |
T3257 |
1595-1596 |
. |
denotes |
. |
R543 |
T3013 |
T3011 |
dobj |
process,using |
R545 |
T3014 |
T3015 |
nummod |
two,step |
R546 |
T3015 |
T3013 |
compound |
step,process |
R547 |
T3016 |
T3015 |
punct |
-,step |
R549 |
T3017 |
T3006 |
punct |
: ,replaced |
R550 |
T3018 |
T3019 |
det |
the,gene |
R552 |
T3019 |
T3006 |
nsubjpass |
gene,replaced |
R553 |
T3020 |
T3019 |
prep |
of,gene |
R554 |
T3021 |
T3020 |
pobj |
interest,of |
R556 |
T3022 |
T3006 |
auxpass |
is,replaced |
R557 |
T3023 |
T3006 |
advmod |
first,replaced |
R558 |
T3024 |
T3006 |
agent |
by,replaced |
R560 |
T3025 |
T3026 |
det |
a,cassette |
R561 |
T3026 |
T3024 |
pobj |
cassette,by |
R562 |
T3027 |
T3026 |
compound |
selection,cassette |
R563 |
T3028 |
T3026 |
acl |
flanked,cassette |
R564 |
T3029 |
T3028 |
agent |
by,flanked |
R565 |
T3030 |
T3031 |
compound |
recombinase,sites |
R567 |
T3031 |
T3029 |
pobj |
sites,by |
R568 |
T3032 |
T3031 |
compound |
target,sites |
R569 |
T3033 |
T3034 |
punct |
(,sites |
R571 |
T3034 |
T3031 |
parataxis |
sites,sites |
R572 |
T3035 |
T3034 |
advmod |
e.g.,sites |
R573 |
T3036 |
T3034 |
compound |
loxP,sites |
R575 |
T3037 |
T3034 |
prep |
for,sites |
R576 |
T3038 |
T3039 |
compound |
Cre,recombinase |
R577 |
T3039 |
T3037 |
pobj |
recombinase,for |
R579 |
T3040 |
T3034 |
punct |
", ",sites |
R581 |
T3041 |
T3042 |
aux |
to,create |
R582 |
T3042 |
T3034 |
advcl |
create,sites |
R584 |
T3043 |
T3044 |
det |
a,locus |
R585 |
T3044 |
T3042 |
dobj |
locus,create |
R586 |
T3045 |
T3044 |
punct |
‘,locus |
R588 |
T3046 |
T3044 |
amod |
floxed,locus |
R589 |
T3047 |
T3044 |
punct |
’,locus |
R590 |
T3048 |
T3034 |
punct |
),sites |
R591 |
T3049 |
T3006 |
punct |
.,replaced |
R593 |
T3051 |
T3052 |
advmod |
Then,removes |
R594 |
T3053 |
T3052 |
punct |
", ",removes |
R597 |
T3054 |
T3055 |
npadvmod |
Cre,mediated |
R598 |
T3055 |
T3057 |
amod |
mediated,recombination |
R599 |
T3056 |
T3055 |
punct |
-,mediated |
R601 |
T3057 |
T3052 |
nsubj |
recombination,removes |
R602 |
T3058 |
T3057 |
prep |
in,recombination |
R603 |
T3059 |
T3060 |
det |
the,presence |
R605 |
T3060 |
T3058 |
pobj |
presence,in |
R606 |
T3061 |
T3060 |
prep |
of,presence |
R607 |
T3062 |
T3063 |
det |
a,cassette |
R609 |
T3063 |
T3061 |
pobj |
cassette,of |
R610 |
T3064 |
T3063 |
acl |
containing,cassette |
R612 |
T3065 |
T3066 |
det |
a,allele |
R613 |
T3066 |
T3064 |
dobj |
allele,containing |
R614 |
T3067 |
T3066 |
amod |
floxed,allele |
R615 |
T3068 |
T3066 |
amod |
mutant,allele |
R616 |
T3069 |
T3070 |
det |
the,sequence |
R617 |
T3070 |
T3052 |
dobj |
sequence,removes |
R619 |
T3071 |
T3070 |
amod |
resident,sequence |
R620 |
T3072 |
T3052 |
cc |
and,removes |
R621 |
T3073 |
T3052 |
conj |
inserts,removes |
R622 |
T3074 |
T3075 |
det |
the,gene |
R624 |
T3075 |
T3073 |
dobj |
gene,inserts |
R625 |
T3076 |
T3075 |
amod |
mutant,gene |
R626 |
T3077 |
T3078 |
punct |
(,7 |
R628 |
T3078 |
T3073 |
parataxis |
7,inserts |
R629 |
T3079 |
T3078 |
punct |
),7 |
R630 |
T3080 |
T3052 |
punct |
.,removes |
R632 |
T3082 |
T3083 |
advmod |
Previously,prevented |
R635 |
T3084 |
T3083 |
punct |
", ",prevented |
R636 |
T3085 |
T3086 |
amod |
technical,difficulties |
R637 |
T3086 |
T3083 |
nsubj |
difficulties,prevented |
R638 |
T3087 |
T3083 |
aux |
have,prevented |
R640 |
T3088 |
T3083 |
dobj |
RMCE,prevented |
R641 |
T3089 |
T3083 |
prep |
from,prevented |
R642 |
T3090 |
T3091 |
auxpass |
being,applied |
R644 |
T3091 |
T3089 |
pcomp |
applied,from |
R645 |
T3092 |
T3091 |
advmod |
routinely,applied |
R646 |
T3093 |
T3094 |
aux |
to,generate |
R648 |
T3094 |
T3091 |
advcl |
generate,applied |
R649 |
T3095 |
T3096 |
amod |
mutant,mice |
R650 |
T3096 |
T3094 |
dobj |
mice,generate |
R652 |
T3097 |
T3083 |
punct |
.,prevented |
R654 |
T3099 |
T3100 |
prep |
For,were |
R655 |
T3101 |
T3099 |
pobj |
example,For |
R657 |
T3102 |
T3100 |
punct |
", ",were |
R658 |
T3103 |
T3100 |
nsubj |
exchanges,were |
R659 |
T3104 |
T3103 |
acl |
using,exchanges |
R661 |
T3105 |
T3104 |
dobj |
cassettes,using |
R662 |
T3106 |
T3104 |
prep |
with,using |
R663 |
T3107 |
T3108 |
advmod |
directly,repeated |
R665 |
T3108 |
T3109 |
amod |
repeated,sites |
R666 |
T3109 |
T3106 |
pobj |
sites,with |
R667 |
T3110 |
T3109 |
compound |
loxP,sites |
R668 |
T3111 |
T3100 |
acomp |
inefficient,were |
R669 |
T3112 |
T3113 |
mark |
because,dominated |
R670 |
T3113 |
T3100 |
advcl |
dominated,were |
R672 |
T3114 |
T3113 |
nsubj |
excisions,dominated |
R673 |
T3115 |
T3116 |
det |
the,exchanges |
R674 |
T3116 |
T3113 |
dobj |
exchanges,dominated |
R676 |
T3117 |
T3116 |
amod |
intended,exchanges |
R677 |
T3118 |
T3119 |
punct |
(,8 |
R680 |
T3119 |
T3113 |
parataxis |
8,dominated |
R681 |
T2973 |
T2974 |
advmod |
Here,report |
R682 |
T3120 |
T3119 |
punct |
),8 |
R683 |
T3121 |
T3100 |
punct |
.,were |
R684 |
T3123 |
T3124 |
compound |
loxP,sites |
R685 |
T2975 |
T2974 |
nsubj |
we,report |
R686 |
T3124 |
T3125 |
nsubjpass |
sites,generated |
R687 |
T3126 |
T3124 |
prep |
with,sites |
R688 |
T2976 |
T2977 |
det |
an,approach |
R689 |
T3127 |
T3128 |
amod |
different,sequences |
R690 |
T3128 |
T3126 |
pobj |
sequences,with |
R691 |
T2977 |
T2974 |
dobj |
approach,report |
R692 |
T3129 |
T3125 |
auxpass |
were,generated |
R693 |
T3130 |
T3131 |
aux |
to,overcome |
R694 |
T2978 |
T2979 |
dep |
that,enables |
R695 |
T3131 |
T3125 |
advcl |
overcome,generated |
R696 |
T3132 |
T3133 |
det |
this,problem |
R697 |
T3133 |
T3131 |
dobj |
problem,overcome |
R698 |
T2979 |
T2977 |
relcl |
enables,approach |
R699 |
T3134 |
T3125 |
punct |
", ",generated |
R700 |
T3135 |
T3125 |
cc |
but,generated |
R701 |
T3136 |
T3137 |
det |
these,sites |
R702 |
T2980 |
T2981 |
advmod |
highly,efficient |
R703 |
T3137 |
T3138 |
nsubj |
sites,underwent |
R704 |
T3138 |
T3125 |
conj |
underwent,generated |
R705 |
T3139 |
T3138 |
advmod |
also,underwent |
R706 |
T2981 |
T2982 |
amod |
efficient,targeting |
R707 |
T2982 |
T2979 |
dobj |
targeting,enables |
R708 |
T3140 |
T3141 |
amod |
intramolecular,recombination |
R709 |
T3141 |
T3138 |
dobj |
recombination,underwent |
R710 |
T2983 |
T2979 |
prep |
at,enables |
R711 |
T3142 |
T3138 |
punct |
", ",underwent |
R712 |
T3143 |
T3138 |
advcl |
making,underwent |
R713 |
T2984 |
T2985 |
det |
the,locus |
R714 |
T3144 |
T3145 |
nsubj |
RMCE,efficient |
R715 |
T3145 |
T3143 |
ccomp |
efficient,making |
R716 |
T3146 |
T3147 |
advmod |
only,contained |
R717 |
T3147 |
T3143 |
advcl |
contained,making |
R718 |
T3148 |
T3147 |
mark |
if,contained |
R719 |
T2985 |
T2983 |
pobj |
locus,at |
R720 |
T3149 |
T3150 |
det |
the,cassette |
R721 |
T3150 |
T3147 |
nsubj |
cassette,contained |
R722 |
T3151 |
T3150 |
compound |
replacement,cassette |
R723 |
T3152 |
T3153 |
det |
a,marker |
R724 |
T2986 |
T2985 |
compound |
p53,locus |
R725 |
T3153 |
T3147 |
dobj |
marker,contained |
R726 |
T3154 |
T3153 |
acl |
enabling,marker |
R727 |
T2987 |
T2979 |
prep |
in,enables |
R728 |
T3155 |
T3154 |
dobj |
selection,enabling |
R729 |
T3156 |
T3155 |
prep |
of,selection |
R730 |
T3157 |
T3158 |
det |
the,recombinant |
R731 |
T3158 |
T3156 |
pobj |
recombinant,of |
R732 |
T2988 |
T2989 |
preconj |
both,cells |
R733 |
T3159 |
T3158 |
amod |
desired,recombinant |
R734 |
T3160 |
T3161 |
punct |
(,7 |
R735 |
T2989 |
T2987 |
pobj |
cells,in |
R736 |
T3161 |
T3147 |
parataxis |
7,contained |
R737 |
T3162 |
T3161 |
punct |
",",7 |
R738 |
T3163 |
T3161 |
appos |
9,7 |
R739 |
T2990 |
T2989 |
compound |
ES,cells |
R740 |
T3164 |
T3165 |
punct |
–,12 |
R741 |
T3165 |
T3163 |
prep |
12,9 |
R742 |
T2991 |
T2989 |
cc |
and,cells |
R743 |
T3166 |
T3161 |
punct |
),7 |
R744 |
T3167 |
T3138 |
punct |
.,underwent |
R745 |
T2992 |
T2989 |
conj |
fibroblasts,cells |
R746 |
T3169 |
T3170 |
advmod |
However,necessitates |
R747 |
T3171 |
T3170 |
punct |
", ",necessitates |
R748 |
T3172 |
T3170 |
nsubj |
interference,necessitates |
R749 |
T2993 |
T2974 |
punct |
.,report |
R750 |
T3173 |
T3172 |
acl |
resulting,interference |
R751 |
T3174 |
T3173 |
prep |
from,resulting |
R752 |
T2995 |
T2996 |
npadvmod |
Recombinase,Mediated |
R753 |
T3175 |
T3174 |
pobj |
expression,from |
R754 |
T3176 |
T3175 |
prep |
of,expression |
R755 |
T3177 |
T3178 |
det |
the,marker |
R756 |
T3178 |
T3176 |
pobj |
marker,of |
R757 |
T2996 |
T2998 |
amod |
Mediated,Exchange |
R758 |
T3179 |
T3178 |
compound |
selection,marker |
R759 |
T3180 |
T3178 |
cc |
and,marker |
R760 |
T3181 |
T3182 |
det |
the,gene |
R761 |
T2997 |
T2996 |
punct |
-,Mediated |
R762 |
T3182 |
T3178 |
conj |
gene,marker |
R763 |
T3183 |
T3182 |
amod |
endogenous,gene |
R764 |
T3184 |
T3185 |
punct |
(,13 |
R765 |
T2998 |
T3000 |
nmod |
Exchange,approaches |
R766 |
T3185 |
T3173 |
parataxis |
13,resulting |
R767 |
T3186 |
T3185 |
punct |
),13 |
R768 |
T3187 |
T3170 |
dobj |
strategies,necessitates |
R769 |
T3188 |
T3189 |
aux |
to,remove |
R770 |
T3189 |
T3187 |
advcl |
remove,strategies |
R771 |
T3190 |
T3191 |
det |
the,gene |
R772 |
T3191 |
T3189 |
dobj |
gene,remove |
R773 |
T2999 |
T2998 |
nmod |
Cassette,Exchange |
R774 |
T3192 |
T3191 |
amod |
selectable,gene |
R775 |
T3193 |
T3170 |
punct |
.,necessitates |
R776 |
T3000 |
T3004 |
nsubjpass |
approaches,developed |
R777 |
T3195 |
T3196 |
advmod |
Together,indicate |
R778 |
T3197 |
T3196 |
punct |
", ",indicate |
R779 |
T3001 |
T2998 |
punct |
(,Exchange |
R780 |
T3198 |
T3199 |
amod |
previous,studies |
R781 |
T3199 |
T3196 |
nsubj |
studies,indicate |
R782 |
T3200 |
T3201 |
mark |
that,requires |
R783 |
T3002 |
T2998 |
appos |
RMCE,Exchange |
R784 |
T3201 |
T3196 |
ccomp |
requires,indicate |
R785 |
T3202 |
T3203 |
det |
an,RMCE |
R786 |
T3003 |
T3000 |
punct |
),approaches |
R787 |
T3203 |
T3201 |
nsubj |
RMCE,requires |
R788 |
T3204 |
T3203 |
amod |
optimal,RMCE |
R789 |
T3205 |
T3206 |
punct |
(,i |
R790 |
T3004 |
T3006 |
ccomp |
developed,replaced |
R791 |
T3206 |
T3207 |
meta |
i,sites |
R792 |
T3207 |
T3201 |
dobj |
sites,requires |
R793 |
T3208 |
T3206 |
punct |
),i |
R794 |
T3005 |
T3004 |
auxpass |
were,developed |
R795 |
T3209 |
T3207 |
amod |
inverted,sites |
R796 |
T3007 |
T3008 |
aux |
to,improve |
R797 |
T3210 |
T3207 |
amod |
heterologous,sites |
R798 |
T3211 |
T3207 |
compound |
loxP,sites |
R799 |
T3212 |
T3207 |
acl |
diverging,sites |
R800 |
T3213 |
T3212 |
prep |
by,diverging |
R801 |
T3214 |
T3215 |
quantmod |
at,2 |
R802 |
T3215 |
T3217 |
nummod |
2,nt |
R803 |
T3008 |
T3004 |
advcl |
improve,developed |
R804 |
T3216 |
T3214 |
advmod |
least,at |
R805 |
T3217 |
T3213 |
pobj |
nt,by |
R806 |
T3218 |
T3219 |
aux |
to,maximize |
R807 |
T3009 |
T3010 |
amod |
targeting,efficiency |
R808 |
T3219 |
T3207 |
advcl |
maximize,sites |
R809 |
T3220 |
T3221 |
det |
the,efficiency |
R810 |
T3221 |
T3219 |
dobj |
efficiency,maximize |
R811 |
T3010 |
T3008 |
dobj |
efficiency,improve |
R812 |
T3222 |
T3221 |
prep |
of,efficiency |
R813 |
T3223 |
T3222 |
pobj |
exchange,of |
R814 |
T3011 |
T3008 |
advcl |
using,improve |
R815 |
T3012 |
T3013 |
det |
a,process |
R816 |
T3224 |
T3207 |
cc |
and,sites |
R819 |
T3225 |
T3226 |
punct |
(,ii |
R820 |
T3226 |
T3227 |
meta |
ii,cassette |
R822 |
T3227 |
T3207 |
conj |
cassette,sites |
R823 |
T3228 |
T3226 |
punct |
),ii |
R824 |
T3229 |
T3227 |
det |
an,cassette |
R825 |
T3230 |
T3227 |
compound |
expression,cassette |
R826 |
T3231 |
T3227 |
acl |
enabling,cassette |
R827 |
T3232 |
T3233 |
preconj |
both,selection |
R829 |
T3233 |
T3231 |
dobj |
selection,enabling |
R830 |
T3234 |
T3233 |
amod |
positive,selection |
R832 |
T3235 |
T3236 |
aux |
to,identify |
R833 |
T3236 |
T3231 |
advcl |
identify,enabling |
R834 |
T3237 |
T3238 |
det |
the,recombinant |
R836 |
T3238 |
T3236 |
dobj |
recombinant,identify |
R837 |
T3239 |
T3238 |
amod |
initial,recombinant |
R838 |
T3240 |
T3231 |
cc |
and,enabling |
R840 |
T3241 |
T3242 |
advmod |
then,selection |
R841 |
T3242 |
T3231 |
conj |
selection,enabling |
R842 |
T3243 |
T3242 |
amod |
negative,selection |
R843 |
T3244 |
T3245 |
aux |
to,obtain |
R845 |
T3245 |
T3242 |
advcl |
obtain,selection |
R846 |
T3246 |
T3247 |
det |
a,allele |
R847 |
T3247 |
T3245 |
dobj |
allele,obtain |
R849 |
T3248 |
T3249 |
punct |
‘,free |
R850 |
T3249 |
T3247 |
amod |
free,allele |
R852 |
T3250 |
T3249 |
npadvmod |
marker,free |
R853 |
T3251 |
T3249 |
punct |
-,free |
R854 |
T3252 |
T3249 |
punct |
’,free |
R856 |
T3253 |
T3247 |
amod |
mutant,allele |
R857 |
T3254 |
T3255 |
punct |
(,14 |
R858 |
T3255 |
T3242 |
parataxis |
14,selection |
R860 |
T3256 |
T3255 |
punct |
),14 |
R861 |
T3257 |
T3196 |
punct |
.,indicate |