PMC:1482699 / 6362-7630 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T4085 0-3 CD denotes Two
T4087 4-9 NN denotes speed
T4088 10-18 JJ denotes congenic
T4086 19-25 NNS denotes panels
T4090 26-30 VBD denotes were
T4089 31-38 VBN denotes created
T4091 38-40 , denotes ,
T4092 40-43 DT denotes the
T4093 44-49 JJ denotes first
T4095 50-65 RB denotes comprehensively
T4094 66-75 VBN denotes dissected
T4096 76-80 NN denotes MMU2
T4097 81-86 IN denotes while
T4099 87-90 DT denotes the
T4100 91-97 JJ denotes second
T4098 98-106 VBN denotes isolated
T4101 107-110 NN denotes QTL
T4102 111-113 IN denotes on
T4103 114-117 NN denotes MMU
T4104 117-118 CD denotes 1
T4105 118-120 , denotes ,
T4106 120-121 CD denotes 5
T4107 121-123 , denotes ,
T4108 123-124 CD denotes 8
T4109 124-126 , denotes ,
T4110 126-127 CD denotes 9
T4111 127-129 , denotes ,
T4112 129-131 CD denotes 11
T4113 132-135 CC denotes and
T4114 136-138 CD denotes 17
T4115 139-140 -LRB- denotes (
T4116 140-145 NN denotes Table
T4117 146-147 CD denotes 1
T4118 147-148 -RRB- denotes )
T4119 148-149 . denotes .
T4120 149-309 sentence denotes The MMU2 panel consisted of eight congenic strains developed by introgressing four overlapping donor regions onto both B6 and HG genetic backgrounds (Table 1).
T4121 150-153 DT denotes The
T4123 154-158 NN denotes MMU2
T4122 159-164 NN denotes panel
T4124 165-174 VBD denotes consisted
T4125 175-177 IN denotes of
T4126 178-183 CD denotes eight
T4128 184-192 JJ denotes congenic
T4127 193-200 NNS denotes strains
T4129 201-210 VBN denotes developed
T4130 211-213 IN denotes by
T4131 214-227 VBG denotes introgressing
T4132 228-232 CD denotes four
T4134 233-244 VBG denotes overlapping
T4135 245-250 NN denotes donor
T4133 251-258 NNS denotes regions
T4136 259-263 IN denotes onto
T4137 264-268 CC denotes both
T4138 269-271 NN denotes B6
T4140 272-275 CC denotes and
T4141 276-278 NN denotes HG
T4142 279-286 JJ denotes genetic
T4139 287-298 NNS denotes backgrounds
T4143 299-300 -LRB- denotes (
T4144 300-305 NN denotes Table
T4145 306-307 CD denotes 1
T4146 307-308 -RRB- denotes )
T4147 308-309 . denotes .
T4148 309-428 sentence denotes Single donor regions bred onto an HG background were created to isolate the remaining QTL on MMU1, 5, 8, 9, 11 and 17.
T4149 310-316 JJ denotes Single
T4151 317-322 NN denotes donor
T4150 323-330 NNS denotes regions
T4153 331-335 VBN denotes bred
T4154 336-340 IN denotes onto
T4155 341-343 DT denotes an
T4157 344-346 NN denotes HG
T4156 347-357 NN denotes background
T4158 358-362 VBD denotes were
T4152 363-370 VBN denotes created
T4159 371-373 TO denotes to
T4160 374-381 VB denotes isolate
T4161 382-385 DT denotes the
T4163 386-395 VBG denotes remaining
T4162 396-399 NN denotes QTL
T4164 400-402 IN denotes on
T4165 403-406 NN denotes MMU
T4166 406-407 CD denotes 1
T4167 407-409 , denotes ,
T4168 409-410 CD denotes 5
T4169 410-412 , denotes ,
T4170 412-413 CD denotes 8
T4171 413-415 , denotes ,
T4172 415-416 CD denotes 9
T4173 416-418 , denotes ,
T4174 418-420 CD denotes 11
T4175 421-424 CC denotes and
T4176 425-427 CD denotes 17
T4177 427-428 . denotes .
T4178 428-624 sentence denotes Implementation of a speed congenic approach using marker-assisted breeding with 79 genome-wide microsatellite markers accelerated production of all strains [5,6] (Additional File 1 and Figure 1).
T4179 429-443 NN denotes Implementation
T4181 444-446 IN denotes of
T4182 447-448 DT denotes a
T4184 449-454 NN denotes speed
T4185 455-463 JJ denotes congenic
T4183 464-472 NN denotes approach
T4186 473-478 VBG denotes using
T4187 479-485 NN denotes marker
T4189 485-486 HYPH denotes -
T4188 486-494 VBN denotes assisted
T4190 495-503 NN denotes breeding
T4191 504-508 IN denotes with
T4192 509-511 CD denotes 79
T4194 512-518 NN denotes genome
T4196 518-519 HYPH denotes -
T4195 519-523 JJ denotes wide
T4197 524-538 NN denotes microsatellite
T4193 539-546 NNS denotes markers
T4180 547-558 VBD denotes accelerated
T4198 559-569 NN denotes production
T4199 570-572 IN denotes of
T4200 573-576 DT denotes all
T4201 577-584 NNS denotes strains
T4202 585-586 -LRB- denotes [
T4204 586-587 CD denotes 5
T4205 587-588 , denotes ,
T4203 588-589 CD denotes 6
T4206 589-590 -RRB- denotes ]
T4207 591-592 -LRB- denotes (
T4209 592-602 JJ denotes Additional
T4208 603-607 NN denotes File
T4210 608-609 CD denotes 1
T4211 610-613 CC denotes and
T4212 614-620 NN denotes Figure
T4213 621-622 CD denotes 1
T4214 622-623 -RRB- denotes )
T4215 623-624 . denotes .
T4216 624-711 sentence denotes Strain abbreviations and genomic region isolated by each strain are listed in Table 1.
T4217 625-631 NN denotes Strain
T4218 632-645 NNS denotes abbreviations
T4220 646-649 CC denotes and
T4221 650-657 JJ denotes genomic
T4222 658-664 NN denotes region
T4223 665-673 VBN denotes isolated
T4224 674-676 IN denotes by
T4225 677-681 DT denotes each
T4226 682-688 NN denotes strain
T4227 689-692 VBP denotes are
T4219 693-699 VBN denotes listed
T4228 700-702 IN denotes in
T4229 703-708 NN denotes Table
T4230 709-710 CD denotes 1
T4231 710-711 . denotes .
T4232 711-955 sentence denotes In addition to both congenic panels, two control strains homozygous B6 (B6.CASTC; B6C) or HG (HG.CASTC; HGC) for all genome-wide markers genotyped were developed from the same cross (see Methods) and served as the basis for strain comparisons.
T4233 712-714 IN denotes In
T4235 715-723 NN denotes addition
T4236 724-726 IN denotes to
T4237 727-731 CC denotes both
T4239 732-740 JJ denotes congenic
T4238 741-747 NNS denotes panels
T4240 747-749 , denotes ,
T4241 749-752 CD denotes two
T4243 753-760 NN denotes control
T4242 761-768 NNS denotes strains
T4244 769-779 JJ denotes homozygous
T4245 780-782 NN denotes B6
T4246 783-784 -LRB- denotes (
T4247 784-792 NN denotes B6.CASTC
T4249 792-793 : denotes ;
T4248 794-797 NN denotes B6C
T4250 797-798 -RRB- denotes )
T4251 799-801 CC denotes or
T4252 802-804 NN denotes HG
T4253 805-806 -LRB- denotes (
T4254 806-814 NN denotes HG.CASTC
T4256 814-815 : denotes ;
T4255 816-819 NN denotes HGC
T4257 819-820 -RRB- denotes )
T4258 821-824 IN denotes for
T4259 825-828 DT denotes all
T4261 829-835 NN denotes genome
T4263 835-836 HYPH denotes -
T4262 836-840 JJ denotes wide
T4260 841-848 NNS denotes markers
T4264 849-858 VBN denotes genotyped
T4265 859-863 VBD denotes were
T4234 864-873 VBN denotes developed
T4266 874-878 IN denotes from
T4267 879-882 DT denotes the
T4269 883-887 JJ denotes same
T4268 888-893 NN denotes cross
T4270 894-895 -LRB- denotes (
T4271 895-898 VB denotes see
T4272 899-906 NNS denotes Methods
T4273 906-907 -RRB- denotes )
T4274 908-911 CC denotes and
T4275 912-918 VBD denotes served
T4276 919-921 IN denotes as
T4277 922-925 DT denotes the
T4278 926-931 NN denotes basis
T4279 932-935 IN denotes for
T4280 936-942 NN denotes strain
T4281 943-954 NNS denotes comparisons
T4282 954-955 . denotes .
T4283 955-1057 sentence denotes After stabilizing each congenic, 12 of 14 were phenotypically characterized for growth and adiposity.
T4284 956-961 IN denotes After
T4286 962-973 VBG denotes stabilizing
T4287 974-978 DT denotes each
T4288 979-987 JJ denotes congenic
T4289 987-989 , denotes ,
T4290 989-991 CD denotes 12
T4292 992-994 IN denotes of
T4291 995-997 CD denotes 14
T4293 998-1002 VBD denotes were
T4294 1003-1017 RB denotes phenotypically
T4285 1018-1031 VBN denotes characterized
T4295 1032-1035 IN denotes for
T4296 1036-1042 NN denotes growth
T4297 1043-1046 CC denotes and
T4298 1047-1056 NN denotes adiposity
T4299 1056-1057 . denotes .
T4300 1057-1135 sentence denotes The HG2D and HG5 strains were not characterized due to reproductive problems.
T4301 1058-1061 DT denotes The
T4303 1062-1066 NN denotes HG2D
T4304 1067-1070 CC denotes and
T4305 1071-1074 NN denotes HG5
T4302 1075-1082 NNS denotes strains
T4307 1083-1087 VBD denotes were
T4308 1088-1091 RB denotes not
T4306 1092-1105 VBN denotes characterized
T4309 1106-1109 IN denotes due
T4310 1110-1112 IN denotes to
T4311 1113-1125 JJ denotes reproductive
T4312 1126-1134 NNS denotes problems
T4313 1134-1135 . denotes .
T4314 1135-1268 sentence denotes The recombinant end points for all strains were refined using microsatellite markers flanking each donor region (Additional File 2).
T4315 1136-1139 DT denotes The
T4317 1140-1151 JJ denotes recombinant
T4318 1152-1155 NN denotes end
T4316 1156-1162 NNS denotes points
T4320 1163-1166 IN denotes for
T4321 1167-1170 DT denotes all
T4322 1171-1178 NNS denotes strains
T4323 1179-1183 VBD denotes were
T4319 1184-1191 VBN denotes refined
T4324 1192-1197 VBG denotes using
T4325 1198-1212 NN denotes microsatellite
T4326 1213-1220 NNS denotes markers
T4327 1221-1229 VBG denotes flanking
T4328 1230-1234 DT denotes each
T4330 1235-1240 NN denotes donor
T4329 1241-1247 NN denotes region
T4331 1248-1249 -LRB- denotes (
T4333 1249-1259 JJ denotes Additional
T4332 1260-1264 NN denotes File
T4334 1265-1266 CD denotes 2
T4335 1266-1267 -RRB- denotes )
T4336 1267-1268 . denotes .
R1135 T4085 T4086 nummod Two,panels
R1136 T4086 T4089 nsubjpass panels,created
R1137 T4087 T4088 npadvmod speed,congenic
R1138 T4088 T4086 amod congenic,panels
R1139 T4090 T4089 auxpass were,created
R1140 T4091 T4089 punct ", ",created
R1141 T4092 T4093 det the,first
R1142 T4093 T4094 nsubj first,dissected
R1143 T4094 T4089 advcl dissected,created
R1144 T4095 T4094 advmod comprehensively,dissected
R1145 T4096 T4094 dobj MMU2,dissected
R1146 T4097 T4098 mark while,isolated
R1147 T4098 T4094 advcl isolated,dissected
R1148 T4099 T4100 det the,second
R1149 T4100 T4098 nsubj second,isolated
R1150 T4101 T4098 dobj QTL,isolated
R1151 T4102 T4098 prep on,isolated
R1152 T4103 T4104 nmod MMU,1
R1153 T4104 T4102 pobj 1,on
R1154 T4105 T4104 punct ", ",1
R1155 T4106 T4104 conj 5,1
R1156 T4107 T4106 punct ", ",5
R1157 T4108 T4106 conj 8,5
R1158 T4109 T4108 punct ", ",8
R1159 T4110 T4108 conj 9,8
R1160 T4111 T4110 punct ", ",9
R1161 T4112 T4110 conj 11,9
R1162 T4113 T4112 cc and,11
R1163 T4114 T4112 conj 17,11
R1164 T4115 T4116 punct (,Table
R1165 T4116 T4098 parataxis Table,isolated
R1166 T4117 T4116 nummod 1,Table
R1167 T4118 T4116 punct ),Table
R1168 T4119 T4089 punct .,created
R1169 T4121 T4122 det The,panel
R1170 T4122 T4124 nsubj panel,consisted
R1171 T4123 T4122 compound MMU2,panel
R1172 T4125 T4124 prep of,consisted
R1173 T4126 T4127 nummod eight,strains
R1174 T4127 T4125 pobj strains,of
R1175 T4128 T4127 amod congenic,strains
R1176 T4129 T4127 acl developed,strains
R1177 T4130 T4129 prep by,developed
R1178 T4131 T4130 pcomp introgressing,by
R1179 T4132 T4133 nummod four,regions
R1180 T4133 T4131 dobj regions,introgressing
R1181 T4134 T4133 amod overlapping,regions
R1182 T4135 T4133 compound donor,regions
R1183 T4136 T4131 prep onto,introgressing
R1184 T4137 T4138 preconj both,B6
R1185 T4138 T4139 nmod B6,backgrounds
R1186 T4139 T4136 pobj backgrounds,onto
R1187 T4140 T4138 cc and,B6
R1188 T4141 T4138 conj HG,B6
R1189 T4142 T4139 amod genetic,backgrounds
R1190 T4143 T4144 punct (,Table
R1191 T4144 T4129 parataxis Table,developed
R1192 T4145 T4144 nummod 1,Table
R1193 T4146 T4144 punct ),Table
R1194 T4147 T4124 punct .,consisted
R1195 T4149 T4150 amod Single,regions
R1196 T4150 T4152 nsubjpass regions,created
R1197 T4151 T4150 compound donor,regions
R1198 T4153 T4150 acl bred,regions
R1199 T4154 T4153 prep onto,bred
R1200 T4155 T4156 det an,background
R1201 T4156 T4154 pobj background,onto
R1202 T4157 T4156 compound HG,background
R1203 T4158 T4152 auxpass were,created
R1204 T4159 T4160 aux to,isolate
R1205 T4160 T4152 advcl isolate,created
R1206 T4161 T4162 det the,QTL
R1207 T4162 T4160 dobj QTL,isolate
R1208 T4163 T4162 amod remaining,QTL
R1209 T4164 T4162 prep on,QTL
R1210 T4165 T4166 nmod MMU,1
R1211 T4166 T4164 pobj 1,on
R1212 T4167 T4166 punct ", ",1
R1213 T4168 T4166 conj 5,1
R1214 T4169 T4168 punct ", ",5
R1215 T4170 T4168 conj 8,5
R1216 T4171 T4170 punct ", ",8
R1217 T4172 T4170 conj 9,8
R1218 T4173 T4172 punct ", ",9
R1219 T4174 T4172 conj 11,9
R1220 T4175 T4174 cc and,11
R1221 T4176 T4174 conj 17,11
R1222 T4177 T4152 punct .,created
R1223 T4179 T4180 nsubj Implementation,accelerated
R1224 T4181 T4179 prep of,Implementation
R1225 T4182 T4183 det a,approach
R1226 T4183 T4181 pobj approach,of
R1227 T4184 T4185 npadvmod speed,congenic
R1228 T4185 T4183 amod congenic,approach
R1229 T4186 T4179 acl using,Implementation
R1230 T4187 T4188 npadvmod marker,assisted
R1231 T4188 T4190 amod assisted,breeding
R1232 T4189 T4188 punct -,assisted
R1233 T4190 T4186 dobj breeding,using
R1234 T4191 T4186 prep with,using
R1235 T4192 T4193 nummod 79,markers
R1236 T4193 T4191 pobj markers,with
R1237 T4194 T4195 npadvmod genome,wide
R1238 T4195 T4193 amod wide,markers
R1239 T4196 T4195 punct -,wide
R1240 T4197 T4193 compound microsatellite,markers
R1241 T4198 T4180 dobj production,accelerated
R1242 T4199 T4198 prep of,production
R1243 T4200 T4201 det all,strains
R1244 T4201 T4199 pobj strains,of
R1245 T4202 T4203 punct [,6
R1246 T4203 T4180 parataxis 6,accelerated
R1247 T4204 T4203 nummod 5,6
R1248 T4205 T4203 punct ",",6
R1249 T4206 T4203 punct ],6
R1250 T4207 T4208 punct (,File
R1251 T4208 T4180 parataxis File,accelerated
R1252 T4209 T4208 amod Additional,File
R1253 T4210 T4208 nummod 1,File
R1254 T4211 T4208 cc and,File
R1255 T4212 T4208 conj Figure,File
R1256 T4213 T4212 nummod 1,Figure
R1257 T4214 T4208 punct ),File
R1258 T4215 T4180 punct .,accelerated
R1259 T4217 T4218 compound Strain,abbreviations
R1260 T4218 T4219 nsubjpass abbreviations,listed
R1261 T4220 T4218 cc and,abbreviations
R1262 T4221 T4222 amod genomic,region
R1263 T4222 T4218 conj region,abbreviations
R1264 T4223 T4222 acl isolated,region
R1265 T4224 T4223 prep by,isolated
R1266 T4225 T4226 det each,strain
R1267 T4226 T4224 pobj strain,by
R1268 T4227 T4219 auxpass are,listed
R1269 T4228 T4219 prep in,listed
R1270 T4229 T4228 pobj Table,in
R1271 T4230 T4229 nummod 1,Table
R1272 T4231 T4219 punct .,listed
R1273 T4233 T4234 prep In,developed
R1274 T4235 T4233 pobj addition,In
R1275 T4236 T4235 prep to,addition
R1276 T4237 T4238 preconj both,panels
R1277 T4238 T4236 pobj panels,to
R1278 T4239 T4238 amod congenic,panels
R1279 T4240 T4234 punct ", ",developed
R1280 T4241 T4242 nummod two,strains
R1281 T4242 T4234 nsubjpass strains,developed
R1282 T4243 T4242 compound control,strains
R1283 T4244 T4245 amod homozygous,B6
R1284 T4245 T4242 appos B6,strains
R1285 T4246 T4245 punct (,B6
R1286 T4247 T4248 nmod B6.CASTC,B6C
R1287 T4248 T4245 appos B6C,B6
R1288 T4249 T4248 punct ;,B6C
R1289 T4250 T4245 punct ),B6
R1290 T4251 T4245 cc or,B6
R1291 T4252 T4245 conj HG,B6
R1292 T4253 T4252 punct (,HG
R1293 T4254 T4255 nmod HG.CASTC,HGC
R1294 T4255 T4252 appos HGC,HG
R1295 T4256 T4255 punct ;,HGC
R1296 T4257 T4245 punct ),B6
R1297 T4258 T4245 prep for,B6
R1298 T4259 T4260 det all,markers
R1299 T4260 T4258 pobj markers,for
R1300 T4261 T4262 npadvmod genome,wide
R1301 T4262 T4260 amod wide,markers
R1302 T4263 T4262 punct -,wide
R1303 T4264 T4242 acl genotyped,strains
R1304 T4265 T4234 auxpass were,developed
R1305 T4266 T4234 prep from,developed
R1306 T4267 T4268 det the,cross
R1307 T4268 T4266 pobj cross,from
R1308 T4269 T4268 amod same,cross
R1309 T4270 T4234 punct (,developed
R1310 T4271 T4234 xcomp see,developed
R1311 T4272 T4271 dobj Methods,see
R1312 T4273 T4234 punct ),developed
R1313 T4274 T4234 cc and,developed
R1314 T4275 T4234 conj served,developed
R1315 T4276 T4275 prep as,served
R1316 T4277 T4278 det the,basis
R1317 T4278 T4276 pobj basis,as
R1318 T4279 T4278 prep for,basis
R1319 T4280 T4281 compound strain,comparisons
R1320 T4281 T4279 pobj comparisons,for
R1321 T4282 T4234 punct .,developed
R1322 T4284 T4285 prep After,characterized
R1323 T4286 T4284 pcomp stabilizing,After
R1324 T4287 T4288 det each,congenic
R1325 T4288 T4286 dobj congenic,stabilizing
R1326 T4289 T4285 punct ", ",characterized
R1327 T4290 T4291 quantmod 12,14
R1328 T4291 T4285 nsubjpass 14,characterized
R1329 T4292 T4291 quantmod of,14
R1330 T4293 T4285 auxpass were,characterized
R1331 T4294 T4285 advmod phenotypically,characterized
R1332 T4295 T4285 prep for,characterized
R1333 T4296 T4295 pobj growth,for
R1334 T4297 T4296 cc and,growth
R1335 T4298 T4296 conj adiposity,growth
R1336 T4299 T4285 punct .,characterized
R1337 T4301 T4302 det The,strains
R1338 T4302 T4306 nsubjpass strains,characterized
R1339 T4303 T4302 nmod HG2D,strains
R1340 T4304 T4303 cc and,HG2D
R1341 T4305 T4303 conj HG5,HG2D
R1342 T4307 T4306 auxpass were,characterized
R1343 T4308 T4306 neg not,characterized
R1344 T4309 T4306 prep due,characterized
R1345 T4310 T4309 pcomp to,due
R1346 T4311 T4312 amod reproductive,problems
R1347 T4312 T4309 pobj problems,due
R1348 T4313 T4306 punct .,characterized
R1349 T4315 T4316 det The,points
R1350 T4316 T4319 nsubjpass points,refined
R1351 T4317 T4316 amod recombinant,points
R1352 T4318 T4316 compound end,points
R1353 T4320 T4316 prep for,points
R1354 T4321 T4322 det all,strains
R1355 T4322 T4320 pobj strains,for
R1356 T4323 T4319 auxpass were,refined
R1357 T4324 T4319 advcl using,refined
R1358 T4325 T4326 compound microsatellite,markers
R1359 T4326 T4324 dobj markers,using
R1360 T4327 T4326 acl flanking,markers
R1361 T4328 T4329 det each,region
R1362 T4329 T4327 dobj region,flanking
R1363 T4330 T4329 compound donor,region
R1364 T4331 T4332 punct (,File
R1365 T4332 T4319 parataxis File,refined
R1366 T4333 T4332 amod Additional,File
R1367 T4334 T4332 nummod 2,File
R1368 T4335 T4332 punct ),File
R1369 T4336 T4319 punct .,refined