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PMC:1482699 / 6328-7630 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T4080 0-5 NN denotes Speed
T4081 6-14 JJ denotes congenic
T4082 15-21 NN denotes strain
T4083 22-33 NN denotes development
T4084 33-183 sentence denotes Two speed congenic panels were created, the first comprehensively dissected MMU2 while the second isolated QTL on MMU1, 5, 8, 9, 11 and 17 (Table 1).
T4085 34-37 CD denotes Two
T4087 38-43 NN denotes speed
T4088 44-52 JJ denotes congenic
T4086 53-59 NNS denotes panels
T4090 60-64 VBD denotes were
T4089 65-72 VBN denotes created
T4091 72-74 , denotes ,
T4092 74-77 DT denotes the
T4093 78-83 JJ denotes first
T4095 84-99 RB denotes comprehensively
T4094 100-109 VBN denotes dissected
T4096 110-114 NN denotes MMU2
T4097 115-120 IN denotes while
T4099 121-124 DT denotes the
T4100 125-131 JJ denotes second
T4098 132-140 VBN denotes isolated
T4101 141-144 NN denotes QTL
T4102 145-147 IN denotes on
T4103 148-151 NN denotes MMU
T4104 151-152 CD denotes 1
T4105 152-154 , denotes ,
T4106 154-155 CD denotes 5
T4107 155-157 , denotes ,
T4108 157-158 CD denotes 8
T4109 158-160 , denotes ,
T4110 160-161 CD denotes 9
T4111 161-163 , denotes ,
T4112 163-165 CD denotes 11
T4113 166-169 CC denotes and
T4114 170-172 CD denotes 17
T4115 173-174 -LRB- denotes (
T4116 174-179 NN denotes Table
T4117 180-181 CD denotes 1
T4118 181-182 -RRB- denotes )
T4119 182-183 . denotes .
T4120 183-343 sentence denotes The MMU2 panel consisted of eight congenic strains developed by introgressing four overlapping donor regions onto both B6 and HG genetic backgrounds (Table 1).
T4121 184-187 DT denotes The
T4123 188-192 NN denotes MMU2
T4122 193-198 NN denotes panel
T4124 199-208 VBD denotes consisted
T4125 209-211 IN denotes of
T4126 212-217 CD denotes eight
T4128 218-226 JJ denotes congenic
T4127 227-234 NNS denotes strains
T4129 235-244 VBN denotes developed
T4130 245-247 IN denotes by
T4131 248-261 VBG denotes introgressing
T4132 262-266 CD denotes four
T4134 267-278 VBG denotes overlapping
T4135 279-284 NN denotes donor
T4133 285-292 NNS denotes regions
T4136 293-297 IN denotes onto
T4137 298-302 CC denotes both
T4138 303-305 NN denotes B6
T4140 306-309 CC denotes and
T4141 310-312 NN denotes HG
T4142 313-320 JJ denotes genetic
T4139 321-332 NNS denotes backgrounds
T4143 333-334 -LRB- denotes (
T4144 334-339 NN denotes Table
T4145 340-341 CD denotes 1
T4146 341-342 -RRB- denotes )
T4147 342-343 . denotes .
T4148 343-462 sentence denotes Single donor regions bred onto an HG background were created to isolate the remaining QTL on MMU1, 5, 8, 9, 11 and 17.
T4149 344-350 JJ denotes Single
T4151 351-356 NN denotes donor
T4150 357-364 NNS denotes regions
T4153 365-369 VBN denotes bred
T4154 370-374 IN denotes onto
T4155 375-377 DT denotes an
T4157 378-380 NN denotes HG
T4156 381-391 NN denotes background
T4158 392-396 VBD denotes were
T4152 397-404 VBN denotes created
T4159 405-407 TO denotes to
T4160 408-415 VB denotes isolate
T4161 416-419 DT denotes the
T4163 420-429 VBG denotes remaining
T4162 430-433 NN denotes QTL
T4164 434-436 IN denotes on
T4165 437-440 NN denotes MMU
T4166 440-441 CD denotes 1
T4167 441-443 , denotes ,
T4168 443-444 CD denotes 5
T4169 444-446 , denotes ,
T4170 446-447 CD denotes 8
T4171 447-449 , denotes ,
T4172 449-450 CD denotes 9
T4173 450-452 , denotes ,
T4174 452-454 CD denotes 11
T4175 455-458 CC denotes and
T4176 459-461 CD denotes 17
T4177 461-462 . denotes .
T4178 462-658 sentence denotes Implementation of a speed congenic approach using marker-assisted breeding with 79 genome-wide microsatellite markers accelerated production of all strains [5,6] (Additional File 1 and Figure 1).
T4179 463-477 NN denotes Implementation
T4181 478-480 IN denotes of
T4182 481-482 DT denotes a
T4184 483-488 NN denotes speed
T4185 489-497 JJ denotes congenic
T4183 498-506 NN denotes approach
T4186 507-512 VBG denotes using
T4187 513-519 NN denotes marker
T4189 519-520 HYPH denotes -
T4188 520-528 VBN denotes assisted
T4190 529-537 NN denotes breeding
T4191 538-542 IN denotes with
T4192 543-545 CD denotes 79
T4194 546-552 NN denotes genome
T4196 552-553 HYPH denotes -
T4195 553-557 JJ denotes wide
T4197 558-572 NN denotes microsatellite
T4193 573-580 NNS denotes markers
T4180 581-592 VBD denotes accelerated
T4198 593-603 NN denotes production
T4199 604-606 IN denotes of
T4200 607-610 DT denotes all
T4201 611-618 NNS denotes strains
T4202 619-620 -LRB- denotes [
T4204 620-621 CD denotes 5
T4205 621-622 , denotes ,
T4203 622-623 CD denotes 6
T4206 623-624 -RRB- denotes ]
T4207 625-626 -LRB- denotes (
T4209 626-636 JJ denotes Additional
T4208 637-641 NN denotes File
T4210 642-643 CD denotes 1
T4211 644-647 CC denotes and
T4212 648-654 NN denotes Figure
T4213 655-656 CD denotes 1
T4214 656-657 -RRB- denotes )
T4215 657-658 . denotes .
T4216 658-745 sentence denotes Strain abbreviations and genomic region isolated by each strain are listed in Table 1.
T4217 659-665 NN denotes Strain
T4218 666-679 NNS denotes abbreviations
T4220 680-683 CC denotes and
T4221 684-691 JJ denotes genomic
T4222 692-698 NN denotes region
T4223 699-707 VBN denotes isolated
T4224 708-710 IN denotes by
T4225 711-715 DT denotes each
T4226 716-722 NN denotes strain
T4227 723-726 VBP denotes are
T4219 727-733 VBN denotes listed
T4228 734-736 IN denotes in
T4229 737-742 NN denotes Table
T4230 743-744 CD denotes 1
T4231 744-745 . denotes .
T4232 745-989 sentence denotes In addition to both congenic panels, two control strains homozygous B6 (B6.CASTC; B6C) or HG (HG.CASTC; HGC) for all genome-wide markers genotyped were developed from the same cross (see Methods) and served as the basis for strain comparisons.
T4233 746-748 IN denotes In
T4235 749-757 NN denotes addition
T4236 758-760 IN denotes to
T4237 761-765 CC denotes both
T4239 766-774 JJ denotes congenic
T4238 775-781 NNS denotes panels
T4240 781-783 , denotes ,
T4241 783-786 CD denotes two
T4243 787-794 NN denotes control
T4242 795-802 NNS denotes strains
T4244 803-813 JJ denotes homozygous
T4245 814-816 NN denotes B6
T4246 817-818 -LRB- denotes (
T4247 818-826 NN denotes B6.CASTC
T4249 826-827 : denotes ;
T4248 828-831 NN denotes B6C
T4250 831-832 -RRB- denotes )
T4251 833-835 CC denotes or
T4252 836-838 NN denotes HG
T4253 839-840 -LRB- denotes (
T4254 840-848 NN denotes HG.CASTC
T4256 848-849 : denotes ;
T4255 850-853 NN denotes HGC
T4257 853-854 -RRB- denotes )
T4258 855-858 IN denotes for
T4259 859-862 DT denotes all
T4261 863-869 NN denotes genome
T4263 869-870 HYPH denotes -
T4262 870-874 JJ denotes wide
T4260 875-882 NNS denotes markers
T4264 883-892 VBN denotes genotyped
T4265 893-897 VBD denotes were
T4234 898-907 VBN denotes developed
T4266 908-912 IN denotes from
T4267 913-916 DT denotes the
T4269 917-921 JJ denotes same
T4268 922-927 NN denotes cross
T4270 928-929 -LRB- denotes (
T4271 929-932 VB denotes see
T4272 933-940 NNS denotes Methods
T4273 940-941 -RRB- denotes )
T4274 942-945 CC denotes and
T4275 946-952 VBD denotes served
T4276 953-955 IN denotes as
T4277 956-959 DT denotes the
T4278 960-965 NN denotes basis
T4279 966-969 IN denotes for
T4280 970-976 NN denotes strain
T4281 977-988 NNS denotes comparisons
T4282 988-989 . denotes .
T4283 989-1091 sentence denotes After stabilizing each congenic, 12 of 14 were phenotypically characterized for growth and adiposity.
T4284 990-995 IN denotes After
T4286 996-1007 VBG denotes stabilizing
T4287 1008-1012 DT denotes each
T4288 1013-1021 JJ denotes congenic
T4289 1021-1023 , denotes ,
T4290 1023-1025 CD denotes 12
T4292 1026-1028 IN denotes of
T4291 1029-1031 CD denotes 14
T4293 1032-1036 VBD denotes were
T4294 1037-1051 RB denotes phenotypically
T4285 1052-1065 VBN denotes characterized
T4295 1066-1069 IN denotes for
T4296 1070-1076 NN denotes growth
T4297 1077-1080 CC denotes and
T4298 1081-1090 NN denotes adiposity
T4299 1090-1091 . denotes .
T4300 1091-1169 sentence denotes The HG2D and HG5 strains were not characterized due to reproductive problems.
T4301 1092-1095 DT denotes The
T4303 1096-1100 NN denotes HG2D
T4304 1101-1104 CC denotes and
T4305 1105-1108 NN denotes HG5
T4302 1109-1116 NNS denotes strains
T4307 1117-1121 VBD denotes were
T4308 1122-1125 RB denotes not
T4306 1126-1139 VBN denotes characterized
T4309 1140-1143 IN denotes due
T4310 1144-1146 IN denotes to
T4311 1147-1159 JJ denotes reproductive
T4312 1160-1168 NNS denotes problems
T4313 1168-1169 . denotes .
T4314 1169-1302 sentence denotes The recombinant end points for all strains were refined using microsatellite markers flanking each donor region (Additional File 2).
T4315 1170-1173 DT denotes The
T4317 1174-1185 JJ denotes recombinant
T4318 1186-1189 NN denotes end
T4316 1190-1196 NNS denotes points
T4320 1197-1200 IN denotes for
T4321 1201-1204 DT denotes all
T4322 1205-1212 NNS denotes strains
T4323 1213-1217 VBD denotes were
T4319 1218-1225 VBN denotes refined
T4324 1226-1231 VBG denotes using
T4325 1232-1246 NN denotes microsatellite
T4326 1247-1254 NNS denotes markers
T4327 1255-1263 VBG denotes flanking
T4328 1264-1268 DT denotes each
T4330 1269-1274 NN denotes donor
T4329 1275-1281 NN denotes region
T4331 1282-1283 -LRB- denotes (
T4333 1283-1293 JJ denotes Additional
T4332 1294-1298 NN denotes File
T4334 1299-1300 CD denotes 2
T4335 1300-1301 -RRB- denotes )
T4336 1301-1302 . denotes .
R1132 T4080 T4081 npadvmod Speed,congenic
R1133 T4081 T4082 amod congenic,strain
R1134 T4082 T4083 compound strain,development
R1135 T4085 T4086 nummod Two,panels
R1136 T4086 T4089 nsubjpass panels,created
R1137 T4087 T4088 npadvmod speed,congenic
R1138 T4088 T4086 amod congenic,panels
R1139 T4090 T4089 auxpass were,created
R1140 T4091 T4089 punct ", ",created
R1141 T4092 T4093 det the,first
R1142 T4093 T4094 nsubj first,dissected
R1143 T4094 T4089 advcl dissected,created
R1144 T4095 T4094 advmod comprehensively,dissected
R1145 T4096 T4094 dobj MMU2,dissected
R1146 T4097 T4098 mark while,isolated
R1147 T4098 T4094 advcl isolated,dissected
R1148 T4099 T4100 det the,second
R1149 T4100 T4098 nsubj second,isolated
R1150 T4101 T4098 dobj QTL,isolated
R1151 T4102 T4098 prep on,isolated
R1152 T4103 T4104 nmod MMU,1
R1153 T4104 T4102 pobj 1,on
R1154 T4105 T4104 punct ", ",1
R1155 T4106 T4104 conj 5,1
R1156 T4107 T4106 punct ", ",5
R1157 T4108 T4106 conj 8,5
R1158 T4109 T4108 punct ", ",8
R1159 T4110 T4108 conj 9,8
R1160 T4111 T4110 punct ", ",9
R1161 T4112 T4110 conj 11,9
R1162 T4113 T4112 cc and,11
R1163 T4114 T4112 conj 17,11
R1164 T4115 T4116 punct (,Table
R1165 T4116 T4098 parataxis Table,isolated
R1166 T4117 T4116 nummod 1,Table
R1167 T4118 T4116 punct ),Table
R1168 T4119 T4089 punct .,created
R1169 T4121 T4122 det The,panel
R1170 T4122 T4124 nsubj panel,consisted
R1171 T4123 T4122 compound MMU2,panel
R1172 T4125 T4124 prep of,consisted
R1173 T4126 T4127 nummod eight,strains
R1174 T4127 T4125 pobj strains,of
R1175 T4128 T4127 amod congenic,strains
R1176 T4129 T4127 acl developed,strains
R1177 T4130 T4129 prep by,developed
R1178 T4131 T4130 pcomp introgressing,by
R1179 T4132 T4133 nummod four,regions
R1180 T4133 T4131 dobj regions,introgressing
R1181 T4134 T4133 amod overlapping,regions
R1182 T4135 T4133 compound donor,regions
R1183 T4136 T4131 prep onto,introgressing
R1184 T4137 T4138 preconj both,B6
R1185 T4138 T4139 nmod B6,backgrounds
R1186 T4139 T4136 pobj backgrounds,onto
R1187 T4140 T4138 cc and,B6
R1188 T4141 T4138 conj HG,B6
R1189 T4142 T4139 amod genetic,backgrounds
R1190 T4143 T4144 punct (,Table
R1191 T4144 T4129 parataxis Table,developed
R1192 T4145 T4144 nummod 1,Table
R1193 T4146 T4144 punct ),Table
R1194 T4147 T4124 punct .,consisted
R1195 T4149 T4150 amod Single,regions
R1196 T4150 T4152 nsubjpass regions,created
R1197 T4151 T4150 compound donor,regions
R1198 T4153 T4150 acl bred,regions
R1199 T4154 T4153 prep onto,bred
R1200 T4155 T4156 det an,background
R1201 T4156 T4154 pobj background,onto
R1202 T4157 T4156 compound HG,background
R1203 T4158 T4152 auxpass were,created
R1204 T4159 T4160 aux to,isolate
R1205 T4160 T4152 advcl isolate,created
R1206 T4161 T4162 det the,QTL
R1207 T4162 T4160 dobj QTL,isolate
R1208 T4163 T4162 amod remaining,QTL
R1209 T4164 T4162 prep on,QTL
R1210 T4165 T4166 nmod MMU,1
R1211 T4166 T4164 pobj 1,on
R1212 T4167 T4166 punct ", ",1
R1213 T4168 T4166 conj 5,1
R1214 T4169 T4168 punct ", ",5
R1215 T4170 T4168 conj 8,5
R1216 T4171 T4170 punct ", ",8
R1217 T4172 T4170 conj 9,8
R1218 T4173 T4172 punct ", ",9
R1219 T4174 T4172 conj 11,9
R1220 T4175 T4174 cc and,11
R1221 T4176 T4174 conj 17,11
R1222 T4177 T4152 punct .,created
R1223 T4179 T4180 nsubj Implementation,accelerated
R1224 T4181 T4179 prep of,Implementation
R1225 T4182 T4183 det a,approach
R1226 T4183 T4181 pobj approach,of
R1227 T4184 T4185 npadvmod speed,congenic
R1228 T4185 T4183 amod congenic,approach
R1229 T4186 T4179 acl using,Implementation
R1230 T4187 T4188 npadvmod marker,assisted
R1231 T4188 T4190 amod assisted,breeding
R1232 T4189 T4188 punct -,assisted
R1233 T4190 T4186 dobj breeding,using
R1234 T4191 T4186 prep with,using
R1235 T4192 T4193 nummod 79,markers
R1236 T4193 T4191 pobj markers,with
R1237 T4194 T4195 npadvmod genome,wide
R1238 T4195 T4193 amod wide,markers
R1239 T4196 T4195 punct -,wide
R1240 T4197 T4193 compound microsatellite,markers
R1241 T4198 T4180 dobj production,accelerated
R1242 T4199 T4198 prep of,production
R1243 T4200 T4201 det all,strains
R1244 T4201 T4199 pobj strains,of
R1245 T4202 T4203 punct [,6
R1246 T4203 T4180 parataxis 6,accelerated
R1247 T4204 T4203 nummod 5,6
R1248 T4205 T4203 punct ",",6
R1249 T4206 T4203 punct ],6
R1250 T4207 T4208 punct (,File
R1251 T4208 T4180 parataxis File,accelerated
R1252 T4209 T4208 amod Additional,File
R1253 T4210 T4208 nummod 1,File
R1254 T4211 T4208 cc and,File
R1255 T4212 T4208 conj Figure,File
R1256 T4213 T4212 nummod 1,Figure
R1257 T4214 T4208 punct ),File
R1258 T4215 T4180 punct .,accelerated
R1259 T4217 T4218 compound Strain,abbreviations
R1260 T4218 T4219 nsubjpass abbreviations,listed
R1261 T4220 T4218 cc and,abbreviations
R1262 T4221 T4222 amod genomic,region
R1263 T4222 T4218 conj region,abbreviations
R1264 T4223 T4222 acl isolated,region
R1265 T4224 T4223 prep by,isolated
R1266 T4225 T4226 det each,strain
R1267 T4226 T4224 pobj strain,by
R1268 T4227 T4219 auxpass are,listed
R1269 T4228 T4219 prep in,listed
R1270 T4229 T4228 pobj Table,in
R1271 T4230 T4229 nummod 1,Table
R1272 T4231 T4219 punct .,listed
R1273 T4233 T4234 prep In,developed
R1274 T4235 T4233 pobj addition,In
R1275 T4236 T4235 prep to,addition
R1276 T4237 T4238 preconj both,panels
R1277 T4238 T4236 pobj panels,to
R1278 T4239 T4238 amod congenic,panels
R1279 T4240 T4234 punct ", ",developed
R1280 T4241 T4242 nummod two,strains
R1281 T4242 T4234 nsubjpass strains,developed
R1282 T4243 T4242 compound control,strains
R1283 T4244 T4245 amod homozygous,B6
R1284 T4245 T4242 appos B6,strains
R1285 T4246 T4245 punct (,B6
R1286 T4247 T4248 nmod B6.CASTC,B6C
R1287 T4248 T4245 appos B6C,B6
R1288 T4249 T4248 punct ;,B6C
R1289 T4250 T4245 punct ),B6
R1290 T4251 T4245 cc or,B6
R1291 T4252 T4245 conj HG,B6
R1292 T4253 T4252 punct (,HG
R1293 T4254 T4255 nmod HG.CASTC,HGC
R1294 T4255 T4252 appos HGC,HG
R1295 T4256 T4255 punct ;,HGC
R1296 T4257 T4245 punct ),B6
R1297 T4258 T4245 prep for,B6
R1298 T4259 T4260 det all,markers
R1299 T4260 T4258 pobj markers,for
R1300 T4261 T4262 npadvmod genome,wide
R1301 T4262 T4260 amod wide,markers
R1302 T4263 T4262 punct -,wide
R1303 T4264 T4242 acl genotyped,strains
R1304 T4265 T4234 auxpass were,developed
R1305 T4266 T4234 prep from,developed
R1306 T4267 T4268 det the,cross
R1307 T4268 T4266 pobj cross,from
R1308 T4269 T4268 amod same,cross
R1309 T4270 T4234 punct (,developed
R1310 T4271 T4234 xcomp see,developed
R1311 T4272 T4271 dobj Methods,see
R1312 T4273 T4234 punct ),developed
R1313 T4274 T4234 cc and,developed
R1314 T4275 T4234 conj served,developed
R1315 T4276 T4275 prep as,served
R1316 T4277 T4278 det the,basis
R1317 T4278 T4276 pobj basis,as
R1318 T4279 T4278 prep for,basis
R1319 T4280 T4281 compound strain,comparisons
R1320 T4281 T4279 pobj comparisons,for
R1321 T4282 T4234 punct .,developed
R1322 T4284 T4285 prep After,characterized
R1323 T4286 T4284 pcomp stabilizing,After
R1324 T4287 T4288 det each,congenic
R1325 T4288 T4286 dobj congenic,stabilizing
R1326 T4289 T4285 punct ", ",characterized
R1327 T4290 T4291 quantmod 12,14
R1328 T4291 T4285 nsubjpass 14,characterized
R1329 T4292 T4291 quantmod of,14
R1330 T4293 T4285 auxpass were,characterized
R1331 T4294 T4285 advmod phenotypically,characterized
R1332 T4295 T4285 prep for,characterized
R1333 T4296 T4295 pobj growth,for
R1334 T4297 T4296 cc and,growth
R1335 T4298 T4296 conj adiposity,growth
R1336 T4299 T4285 punct .,characterized
R1337 T4301 T4302 det The,strains
R1338 T4302 T4306 nsubjpass strains,characterized
R1339 T4303 T4302 nmod HG2D,strains
R1340 T4304 T4303 cc and,HG2D
R1341 T4305 T4303 conj HG5,HG2D
R1342 T4307 T4306 auxpass were,characterized
R1343 T4308 T4306 neg not,characterized
R1344 T4309 T4306 prep due,characterized
R1345 T4310 T4309 pcomp to,due
R1346 T4311 T4312 amod reproductive,problems
R1347 T4312 T4309 pobj problems,due
R1348 T4313 T4306 punct .,characterized
R1349 T4315 T4316 det The,points
R1350 T4316 T4319 nsubjpass points,refined
R1351 T4317 T4316 amod recombinant,points
R1352 T4318 T4316 compound end,points
R1353 T4320 T4316 prep for,points
R1354 T4321 T4322 det all,strains
R1355 T4322 T4320 pobj strains,for
R1356 T4323 T4319 auxpass were,refined
R1357 T4324 T4319 advcl using,refined
R1358 T4325 T4326 compound microsatellite,markers
R1359 T4326 T4324 dobj markers,using
R1360 T4327 T4326 acl flanking,markers
R1361 T4328 T4329 det each,region
R1362 T4329 T4327 dobj region,flanking
R1363 T4330 T4329 compound donor,region
R1364 T4331 T4332 punct (,File
R1365 T4332 T4319 parataxis File,refined
R1366 T4333 T4332 amod Additional,File
R1367 T4334 T4332 nummod 2,File
R1368 T4335 T4332 punct ),File
R1369 T4336 T4319 punct .,refined