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PMC:1310620 / 8380-9542 JSONTXT 4 Projects

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Id Subject Object Predicate Lexical cue
T2162 0-11 JJ denotes Statistical
T2163 12-20 NN denotes analysis
T2164 20-292 sentence denotes More than 6,000 transcript abundance measurements were conducted in multiple experiments over two years to assess the six transcription factors and sixteen antioxidant and DNA repair genes in NBEC samples from 49 individuals (24 non-BC individuals and 25 BC individuals).
T2165 21-25 JJR denotes More
T2167 26-30 IN denotes than
T2166 31-36 CD denotes 6,000
T2169 37-47 NN denotes transcript
T2170 48-57 NN denotes abundance
T2168 58-70 NNS denotes measurements
T2172 71-75 VBD denotes were
T2171 76-85 VBN denotes conducted
T2173 86-88 IN denotes in
T2174 89-97 JJ denotes multiple
T2175 98-109 NNS denotes experiments
T2176 110-114 IN denotes over
T2177 115-118 CD denotes two
T2178 119-124 NNS denotes years
T2179 125-127 TO denotes to
T2180 128-134 VB denotes assess
T2181 135-138 DT denotes the
T2183 139-142 CD denotes six
T2184 143-156 NN denotes transcription
T2182 157-164 NNS denotes factors
T2185 165-168 CC denotes and
T2186 169-176 CD denotes sixteen
T2188 177-188 NN denotes antioxidant
T2189 189-192 CC denotes and
T2190 193-196 NN denotes DNA
T2191 197-203 NN denotes repair
T2187 204-209 NNS denotes genes
T2192 210-212 IN denotes in
T2193 213-217 NN denotes NBEC
T2194 218-225 NNS denotes samples
T2195 226-230 IN denotes from
T2196 231-233 CD denotes 49
T2197 234-245 NNS denotes individuals
T2198 246-247 -LRB- denotes (
T2200 247-249 CD denotes 24
T2201 250-256 JJ denotes non-BC
T2199 257-268 NNS denotes individuals
T2202 269-272 CC denotes and
T2203 273-275 CD denotes 25
T2205 276-278 NN denotes BC
T2204 279-290 NNS denotes individuals
T2206 290-291 -RRB- denotes )
T2207 291-292 . denotes .
T2208 292-472 sentence denotes Correlation of each of the six transcription factors with each of the antioxidant or DNA repair genes was determined by Pearson's correlation following logarithmic transformation.
T2209 293-304 NN denotes Correlation
T2211 305-307 IN denotes of
T2212 308-312 DT denotes each
T2213 313-315 IN denotes of
T2214 316-319 DT denotes the
T2216 320-323 CD denotes six
T2217 324-337 NN denotes transcription
T2215 338-345 NNS denotes factors
T2218 346-350 IN denotes with
T2219 351-355 DT denotes each
T2220 356-358 IN denotes of
T2221 359-362 DT denotes the
T2223 363-374 NN denotes antioxidant
T2224 375-377 CC denotes or
T2225 378-381 NN denotes DNA
T2226 382-388 NN denotes repair
T2222 389-394 NNS denotes genes
T2227 395-398 VBD denotes was
T2210 399-409 VBN denotes determined
T2228 410-412 IN denotes by
T2229 413-420 NNP denotes Pearson
T2231 420-422 POS denotes 's
T2230 423-434 NN denotes correlation
T2232 435-444 VBG denotes following
T2233 445-456 JJ denotes logarithmic
T2234 457-471 NN denotes transformation
T2235 471-472 . denotes .
T2236 472-592 sentence denotes The transformation was necessary due to the wide biological variation in expression of each gene among the individuals.
T2237 473-476 DT denotes The
T2238 477-491 NN denotes transformation
T2239 492-495 VBD denotes was
T2240 496-505 JJ denotes necessary
T2241 506-509 IN denotes due
T2242 510-512 IN denotes to
T2243 513-516 DT denotes the
T2245 517-521 JJ denotes wide
T2246 522-532 JJ denotes biological
T2244 533-542 NN denotes variation
T2247 543-545 IN denotes in
T2248 546-556 NN denotes expression
T2249 557-559 IN denotes of
T2250 560-564 DT denotes each
T2251 565-569 NN denotes gene
T2252 570-575 IN denotes among
T2253 576-579 DT denotes the
T2254 580-591 NNS denotes individuals
T2255 591-592 . denotes .
T2256 592-801 sentence denotes Significance level was defined as p < 0.01 following Bonferroni adjustment for multiple comparison, specifically comparison of each of six transcription factors to each of the antioxidant or DNA repair genes.
T2257 593-605 NN denotes Significance
T2258 606-611 NN denotes level
T2260 612-615 VBD denotes was
T2259 616-623 VBN denotes defined
T2261 624-626 IN denotes as
T2262 627-628 NN denotes p
T2263 629-630 SYM denotes <
T2264 631-635 CD denotes 0.01
T2265 636-645 VBG denotes following
T2266 646-656 NNP denotes Bonferroni
T2267 657-667 NN denotes adjustment
T2268 668-671 IN denotes for
T2269 672-680 JJ denotes multiple
T2270 681-691 NN denotes comparison
T2271 691-693 , denotes ,
T2272 693-705 RB denotes specifically
T2273 706-716 NN denotes comparison
T2274 717-719 IN denotes of
T2275 720-724 DT denotes each
T2276 725-727 IN denotes of
T2277 728-731 CD denotes six
T2279 732-745 NN denotes transcription
T2278 746-753 NNS denotes factors
T2280 754-756 IN denotes to
T2281 757-761 DT denotes each
T2282 762-764 IN denotes of
T2283 765-768 DT denotes the
T2285 769-780 NN denotes antioxidant
T2286 781-783 CC denotes or
T2287 784-787 NN denotes DNA
T2288 788-794 NN denotes repair
T2284 795-800 NNS denotes genes
T2289 800-801 . denotes .
T2290 801-931 sentence denotes Comparison for significant differences between pairs of correlation coefficients was done by Fisher's Z-transformation test [16].
T2291 802-812 NN denotes Comparison
T2293 813-816 IN denotes for
T2294 817-828 JJ denotes significant
T2295 829-840 NNS denotes differences
T2296 841-848 IN denotes between
T2297 849-854 NNS denotes pairs
T2298 855-857 IN denotes of
T2299 858-869 NN denotes correlation
T2300 870-882 NNS denotes coefficients
T2301 883-886 VBD denotes was
T2292 887-891 VBN denotes done
T2302 892-894 IN denotes by
T2303 895-901 NNP denotes Fisher
T2305 901-903 POS denotes 's
T2306 904-905 NN denotes Z
T2308 905-906 HYPH denotes -
T2307 906-920 NN denotes transformation
T2304 921-925 NN denotes test
T2309 926-927 -LRB- denotes [
T2310 927-929 CD denotes 16
T2311 929-930 -RRB- denotes ]
T2312 930-931 . denotes .
T2313 931-1162 sentence denotes Analysis of the relationship between virtually-multiplexed transcript abundance data for each gene with age was assessed by Pearson's correlation, with gender by t-test, and with smoking history by ANOVA followed by Duncan's test.
T2314 932-940 NN denotes Analysis
T2316 941-943 IN denotes of
T2317 944-947 DT denotes the
T2318 948-960 NN denotes relationship
T2319 961-968 IN denotes between
T2320 969-978 RB denotes virtually
T2322 978-979 HYPH denotes -
T2321 979-990 VBN denotes multiplexed
T2324 991-1001 NN denotes transcript
T2325 1002-1011 NN denotes abundance
T2323 1012-1016 NNS denotes data
T2326 1017-1020 IN denotes for
T2327 1021-1025 DT denotes each
T2328 1026-1030 NN denotes gene
T2329 1031-1035 IN denotes with
T2330 1036-1039 NN denotes age
T2331 1040-1043 VBD denotes was
T2315 1044-1052 VBN denotes assessed
T2332 1053-1055 IN denotes by
T2333 1056-1063 NNP denotes Pearson
T2335 1063-1065 POS denotes 's
T2334 1066-1077 NN denotes correlation
T2336 1077-1079 , denotes ,
T2337 1079-1083 IN denotes with
T2338 1084-1090 NN denotes gender
T2339 1091-1093 IN denotes by
T2340 1094-1095 NN denotes t
T2342 1095-1096 HYPH denotes -
T2341 1096-1100 NN denotes test
T2343 1100-1102 , denotes ,
T2344 1102-1105 CC denotes and
T2345 1106-1110 IN denotes with
T2346 1111-1118 NN denotes smoking
T2347 1119-1126 NN denotes history
T2348 1127-1129 IN denotes by
T2349 1130-1135 NN denotes ANOVA
T2350 1136-1144 VBN denotes followed
T2351 1145-1147 IN denotes by
T2352 1148-1154 NNP denotes Duncan
T2354 1154-1156 POS denotes 's
T2353 1157-1161 NN denotes test
T2355 1161-1162 . denotes .
R1396 T2162 T2163 amod Statistical,analysis
R1397 T2165 T2166 amod More,"6,000"
R1398 T2166 T2168 nummod "6,000",measurements
R1399 T2167 T2166 quantmod than,"6,000"
R1400 T2168 T2171 nsubjpass measurements,conducted
R1401 T2169 T2170 compound transcript,abundance
R1402 T2170 T2168 compound abundance,measurements
R1403 T2172 T2171 auxpass were,conducted
R1404 T2173 T2171 prep in,conducted
R1405 T2174 T2175 amod multiple,experiments
R1406 T2175 T2173 pobj experiments,in
R1407 T2176 T2171 prep over,conducted
R1408 T2177 T2178 nummod two,years
R1409 T2178 T2176 pobj years,over
R1410 T2179 T2180 aux to,assess
R1411 T2180 T2171 advcl assess,conducted
R1412 T2181 T2182 det the,factors
R1413 T2182 T2180 dobj factors,assess
R1414 T2183 T2182 nummod six,factors
R1415 T2184 T2182 compound transcription,factors
R1416 T2185 T2182 cc and,factors
R1417 T2186 T2187 nummod sixteen,genes
R1418 T2187 T2182 conj genes,factors
R1419 T2188 T2187 nmod antioxidant,genes
R1420 T2189 T2188 cc and,antioxidant
R1421 T2190 T2191 compound DNA,repair
R1422 T2191 T2188 conj repair,antioxidant
R1423 T2192 T2180 prep in,assess
R1424 T2193 T2194 compound NBEC,samples
R1425 T2194 T2192 pobj samples,in
R1426 T2195 T2194 prep from,samples
R1427 T2196 T2197 nummod 49,individuals
R1428 T2197 T2195 pobj individuals,from
R1429 T2198 T2199 punct (,individuals
R1430 T2199 T2197 parataxis individuals,individuals
R1431 T2200 T2199 nummod 24,individuals
R1432 T2201 T2199 amod non-BC,individuals
R1433 T2202 T2199 cc and,individuals
R1434 T2203 T2204 nummod 25,individuals
R1435 T2204 T2199 conj individuals,individuals
R1436 T2205 T2204 compound BC,individuals
R1437 T2206 T2199 punct ),individuals
R1438 T2207 T2171 punct .,conducted
R1439 T2209 T2210 nsubjpass Correlation,determined
R1440 T2211 T2209 prep of,Correlation
R1441 T2212 T2211 pobj each,of
R1442 T2213 T2212 prep of,each
R1443 T2214 T2215 det the,factors
R1444 T2215 T2213 pobj factors,of
R1445 T2216 T2215 nummod six,factors
R1446 T2217 T2215 compound transcription,factors
R1447 T2218 T2209 prep with,Correlation
R1448 T2219 T2218 pobj each,with
R1449 T2220 T2219 prep of,each
R1450 T2221 T2222 det the,genes
R1451 T2222 T2220 pobj genes,of
R1452 T2223 T2222 nmod antioxidant,genes
R1453 T2224 T2223 cc or,antioxidant
R1454 T2225 T2226 compound DNA,repair
R1455 T2226 T2223 conj repair,antioxidant
R1456 T2227 T2210 auxpass was,determined
R1457 T2228 T2210 prep by,determined
R1458 T2229 T2230 poss Pearson,correlation
R1459 T2230 T2228 pobj correlation,by
R1460 T2231 T2229 case 's,Pearson
R1461 T2232 T2230 prep following,correlation
R1462 T2233 T2234 amod logarithmic,transformation
R1463 T2234 T2232 pobj transformation,following
R1464 T2235 T2210 punct .,determined
R1465 T2237 T2238 det The,transformation
R1466 T2238 T2239 nsubj transformation,was
R1467 T2240 T2239 acomp necessary,was
R1468 T2241 T2239 prep due,was
R1469 T2242 T2241 pcomp to,due
R1470 T2243 T2244 det the,variation
R1471 T2244 T2241 pobj variation,due
R1472 T2245 T2244 amod wide,variation
R1473 T2246 T2244 amod biological,variation
R1474 T2247 T2244 prep in,variation
R1475 T2248 T2247 pobj expression,in
R1476 T2249 T2248 prep of,expression
R1477 T2250 T2251 det each,gene
R1478 T2251 T2249 pobj gene,of
R1479 T2252 T2244 prep among,variation
R1480 T2253 T2254 det the,individuals
R1481 T2254 T2252 pobj individuals,among
R1482 T2255 T2239 punct .,was
R1483 T2257 T2258 compound Significance,level
R1484 T2258 T2259 nsubjpass level,defined
R1485 T2260 T2259 auxpass was,defined
R1486 T2261 T2259 prep as,defined
R1487 T2262 T2261 pobj p,as
R1488 T2263 T2264 punct <,0.01
R1489 T2264 T2262 amod 0.01,p
R1490 T2265 T2259 prep following,defined
R1491 T2266 T2267 compound Bonferroni,adjustment
R1492 T2267 T2265 pobj adjustment,following
R1493 T2268 T2267 prep for,adjustment
R1494 T2269 T2270 amod multiple,comparison
R1495 T2270 T2268 pobj comparison,for
R1496 T2271 T2270 punct ", ",comparison
R1497 T2272 T2273 advmod specifically,comparison
R1498 T2273 T2270 appos comparison,comparison
R1499 T2274 T2273 prep of,comparison
R1500 T2275 T2274 pobj each,of
R1501 T2276 T2275 prep of,each
R1502 T2277 T2278 nummod six,factors
R1503 T2278 T2276 pobj factors,of
R1504 T2279 T2278 compound transcription,factors
R1505 T2280 T2273 prep to,comparison
R1506 T2281 T2280 pobj each,to
R1507 T2282 T2281 prep of,each
R1508 T2283 T2284 det the,genes
R1509 T2284 T2282 pobj genes,of
R1510 T2285 T2284 nmod antioxidant,genes
R1511 T2286 T2285 cc or,antioxidant
R1512 T2287 T2288 compound DNA,repair
R1513 T2288 T2285 conj repair,antioxidant
R1514 T2289 T2259 punct .,defined
R1515 T2291 T2292 nsubjpass Comparison,done
R1516 T2293 T2291 prep for,Comparison
R1517 T2294 T2295 amod significant,differences
R1518 T2295 T2293 pobj differences,for
R1519 T2296 T2291 prep between,Comparison
R1520 T2297 T2296 pobj pairs,between
R1521 T2298 T2297 prep of,pairs
R1522 T2299 T2300 compound correlation,coefficients
R1523 T2300 T2298 pobj coefficients,of
R1524 T2301 T2292 auxpass was,done
R1525 T2302 T2292 prep by,done
R1526 T2303 T2304 poss Fisher,test
R1527 T2304 T2302 pobj test,by
R1528 T2305 T2303 case 's,Fisher
R1529 T2306 T2307 compound Z,transformation
R1530 T2307 T2304 compound transformation,test
R1531 T2308 T2307 punct -,transformation
R1532 T2309 T2310 punct [,16
R1533 T2310 T2292 parataxis 16,done
R1534 T2311 T2310 punct ],16
R1535 T2312 T2292 punct .,done
R1536 T2314 T2315 nsubjpass Analysis,assessed
R1537 T2316 T2314 prep of,Analysis
R1538 T2317 T2318 det the,relationship
R1539 T2318 T2316 pobj relationship,of
R1540 T2319 T2318 prep between,relationship
R1541 T2320 T2321 advmod virtually,multiplexed
R1542 T2321 T2323 amod multiplexed,data
R1543 T2322 T2321 punct -,multiplexed
R1544 T2323 T2319 pobj data,between
R1545 T2324 T2325 compound transcript,abundance
R1546 T2325 T2323 compound abundance,data
R1547 T2326 T2318 prep for,relationship
R1548 T2327 T2328 det each,gene
R1549 T2328 T2326 pobj gene,for
R1550 T2329 T2318 prep with,relationship
R1551 T2330 T2329 pobj age,with
R1552 T2331 T2315 auxpass was,assessed
R1553 T2332 T2315 prep by,assessed
R1554 T2333 T2334 poss Pearson,correlation
R1555 T2334 T2332 pobj correlation,by
R1556 T2335 T2333 case 's,Pearson
R1557 T2336 T2315 punct ", ",assessed
R1558 T2337 T2315 prep with,assessed
R1559 T2338 T2337 pobj gender,with
R1560 T2339 T2338 prep by,gender
R1561 T2340 T2341 compound t,test
R1562 T2341 T2339 pobj test,by
R1563 T2342 T2341 punct -,test
R1564 T2343 T2337 punct ", ",with
R1565 T2344 T2337 cc and,with
R1566 T2345 T2337 conj with,with
R1567 T2346 T2347 compound smoking,history
R1568 T2347 T2345 pobj history,with
R1569 T2348 T2347 prep by,history
R1570 T2349 T2348 pobj ANOVA,by
R1571 T2350 T2349 acl followed,ANOVA
R1572 T2351 T2350 agent by,followed
R1573 T2352 T2353 poss Duncan,test
R1574 T2353 T2351 pobj test,by
R1575 T2354 T2352 case 's,Duncan
R1576 T2355 T2315 punct .,assessed