Id |
Subject |
Object |
Predicate |
Lexical cue |
T1535 |
0-9 |
NN |
denotes |
Transgene |
T1536 |
10-22 |
NN |
denotes |
Construction |
T1537 |
22-422 |
sentence |
denotes |
We created a tetracycline-responsive chimeric mouse/human APP695Swedish/Indiana (swe/ind) vector by replacing the promoter region of the moPrP.XhoI vector (also known as pPrPpE1/E2,3sal [15]) with the tetracycline-responsive promoter of pTetSplice (Life Technologies, Rockville, Maryland, United States), and then ligating mouse APP with a humanized Aβ domain (mo/huAPP695) cDNA into the new vector. |
T1538 |
23-25 |
PRP |
denotes |
We |
T1539 |
26-33 |
VBD |
denotes |
created |
T1540 |
34-35 |
DT |
denotes |
a |
T1542 |
36-48 |
NN |
denotes |
tetracycline |
T1544 |
48-49 |
HYPH |
denotes |
- |
T1543 |
49-59 |
JJ |
denotes |
responsive |
T1545 |
60-68 |
JJ |
denotes |
chimeric |
T1546 |
69-74 |
NN |
denotes |
mouse |
T1547 |
74-75 |
HYPH |
denotes |
/ |
T1548 |
75-80 |
JJ |
denotes |
human |
T1549 |
81-94 |
NN |
denotes |
APP695Swedish |
T1551 |
94-95 |
HYPH |
denotes |
/ |
T1550 |
95-102 |
NNP |
denotes |
Indiana |
T1552 |
103-104 |
-LRB- |
denotes |
( |
T1553 |
104-107 |
NN |
denotes |
swe |
T1555 |
107-108 |
HYPH |
denotes |
/ |
T1554 |
108-111 |
NN |
denotes |
ind |
T1556 |
111-112 |
-RRB- |
denotes |
) |
T1541 |
113-119 |
NN |
denotes |
vector |
T1557 |
120-122 |
IN |
denotes |
by |
T1558 |
123-132 |
VBG |
denotes |
replacing |
T1559 |
133-136 |
DT |
denotes |
the |
T1561 |
137-145 |
NN |
denotes |
promoter |
T1560 |
146-152 |
NN |
denotes |
region |
T1562 |
153-155 |
IN |
denotes |
of |
T1563 |
156-159 |
DT |
denotes |
the |
T1565 |
160-170 |
NN |
denotes |
moPrP.XhoI |
T1564 |
171-177 |
NN |
denotes |
vector |
T1566 |
178-179 |
-LRB- |
denotes |
( |
T1568 |
179-183 |
RB |
denotes |
also |
T1567 |
184-189 |
VBN |
denotes |
known |
T1569 |
190-192 |
IN |
denotes |
as |
T1570 |
193-200 |
NN |
denotes |
pPrPpE1 |
T1572 |
200-201 |
HYPH |
denotes |
/ |
T1573 |
201-203 |
NN |
denotes |
E2 |
T1574 |
203-204 |
, |
denotes |
, |
T1571 |
204-208 |
NN |
denotes |
3sal |
T1575 |
209-210 |
-LRB- |
denotes |
[ |
T1576 |
210-212 |
CD |
denotes |
15 |
T1577 |
212-213 |
-RRB- |
denotes |
] |
T1578 |
213-214 |
-RRB- |
denotes |
) |
T1579 |
215-219 |
IN |
denotes |
with |
T1580 |
220-223 |
DT |
denotes |
the |
T1582 |
224-236 |
NN |
denotes |
tetracycline |
T1584 |
236-237 |
HYPH |
denotes |
- |
T1583 |
237-247 |
JJ |
denotes |
responsive |
T1581 |
248-256 |
NN |
denotes |
promoter |
T1585 |
257-259 |
IN |
denotes |
of |
T1586 |
260-270 |
NN |
denotes |
pTetSplice |
T1587 |
271-272 |
-LRB- |
denotes |
( |
T1589 |
272-276 |
NNP |
denotes |
Life |
T1588 |
277-289 |
NNP |
denotes |
Technologies |
T1590 |
289-291 |
, |
denotes |
, |
T1591 |
291-300 |
NNP |
denotes |
Rockville |
T1592 |
300-302 |
, |
denotes |
, |
T1593 |
302-310 |
NNP |
denotes |
Maryland |
T1594 |
310-312 |
, |
denotes |
, |
T1595 |
312-318 |
NNP |
denotes |
United |
T1596 |
319-325 |
NNP |
denotes |
States |
T1597 |
325-326 |
-RRB- |
denotes |
) |
T1598 |
326-328 |
, |
denotes |
, |
T1599 |
328-331 |
CC |
denotes |
and |
T1600 |
332-336 |
RB |
denotes |
then |
T1601 |
337-345 |
VBG |
denotes |
ligating |
T1602 |
346-351 |
NN |
denotes |
mouse |
T1603 |
352-355 |
NN |
denotes |
APP |
T1604 |
356-360 |
IN |
denotes |
with |
T1605 |
361-362 |
DT |
denotes |
a |
T1607 |
363-372 |
JJ |
denotes |
humanized |
T1608 |
373-375 |
NN |
denotes |
Aβ |
T1606 |
376-382 |
NN |
denotes |
domain |
T1610 |
383-384 |
-LRB- |
denotes |
( |
T1611 |
384-386 |
NN |
denotes |
mo |
T1613 |
386-387 |
HYPH |
denotes |
/ |
T1612 |
387-395 |
NN |
denotes |
huAPP695 |
T1614 |
395-396 |
-RRB- |
denotes |
) |
T1609 |
397-401 |
NN |
denotes |
cDNA |
T1615 |
402-406 |
IN |
denotes |
into |
T1616 |
407-410 |
DT |
denotes |
the |
T1618 |
411-414 |
JJ |
denotes |
new |
T1617 |
415-421 |
NN |
denotes |
vector |
T1619 |
421-422 |
. |
denotes |
. |
T1620 |
422-792 |
sentence |
denotes |
We began by cloning the tetracycline-responsive promoter (bp 6–481) from pTetSplice by PCR using primers that added external BamHI and NotI sites to the 5′ end and a BamHI site to the 3′ end, while destroying XhoI and BamHI sites within the promoter (forward: GCC GGA TCC GCG GCC GCC GTC GAG TTT ACC ACT CCC TAT C; reverse: GCC GGA TCC ACT CTA GAA GAT CCC CGG GTA CCG). |
T1621 |
423-425 |
PRP |
denotes |
We |
T1622 |
426-431 |
VBD |
denotes |
began |
T1623 |
432-434 |
IN |
denotes |
by |
T1624 |
435-442 |
VBG |
denotes |
cloning |
T1625 |
443-446 |
DT |
denotes |
the |
T1627 |
447-459 |
NN |
denotes |
tetracycline |
T1629 |
459-460 |
HYPH |
denotes |
- |
T1628 |
460-470 |
JJ |
denotes |
responsive |
T1626 |
471-479 |
NN |
denotes |
promoter |
T1630 |
480-481 |
-LRB- |
denotes |
( |
T1632 |
481-483 |
NN |
denotes |
bp |
T1631 |
484-485 |
CD |
denotes |
6 |
T1633 |
485-486 |
SYM |
denotes |
– |
T1634 |
486-489 |
CD |
denotes |
481 |
T1635 |
489-490 |
-RRB- |
denotes |
) |
T1636 |
491-495 |
IN |
denotes |
from |
T1637 |
496-506 |
NN |
denotes |
pTetSplice |
T1638 |
507-509 |
IN |
denotes |
by |
T1639 |
510-513 |
NN |
denotes |
PCR |
T1640 |
514-519 |
VBG |
denotes |
using |
T1641 |
520-527 |
NNS |
denotes |
primers |
T1642 |
528-532 |
WDT |
denotes |
that |
T1643 |
533-538 |
VBD |
denotes |
added |
T1644 |
539-547 |
JJ |
denotes |
external |
T1646 |
548-553 |
NN |
denotes |
BamHI |
T1647 |
554-557 |
CC |
denotes |
and |
T1648 |
558-562 |
NN |
denotes |
NotI |
T1645 |
563-568 |
NNS |
denotes |
sites |
T1649 |
569-571 |
IN |
denotes |
to |
T1650 |
572-575 |
DT |
denotes |
the |
T1652 |
576-577 |
CD |
denotes |
5 |
T1653 |
577-578 |
SYM |
denotes |
′ |
T1651 |
579-582 |
NN |
denotes |
end |
T1654 |
583-586 |
CC |
denotes |
and |
T1655 |
587-588 |
DT |
denotes |
a |
T1657 |
589-594 |
NN |
denotes |
BamHI |
T1656 |
595-599 |
NN |
denotes |
site |
T1658 |
600-602 |
IN |
denotes |
to |
T1659 |
603-606 |
DT |
denotes |
the |
T1661 |
607-608 |
CD |
denotes |
3 |
T1662 |
608-609 |
SYM |
denotes |
′ |
T1660 |
610-613 |
NN |
denotes |
end |
T1663 |
613-615 |
, |
denotes |
, |
T1664 |
615-620 |
IN |
denotes |
while |
T1665 |
621-631 |
VBG |
denotes |
destroying |
T1666 |
632-636 |
NN |
denotes |
XhoI |
T1668 |
637-640 |
CC |
denotes |
and |
T1669 |
641-646 |
NN |
denotes |
BamHI |
T1667 |
647-652 |
NNS |
denotes |
sites |
T1670 |
653-659 |
IN |
denotes |
within |
T1671 |
660-663 |
DT |
denotes |
the |
T1672 |
664-672 |
NN |
denotes |
promoter |
T1673 |
673-674 |
-LRB- |
denotes |
( |
T1675 |
674-681 |
NN |
denotes |
forward |
T1677 |
681-683 |
: |
denotes |
: |
T1678 |
683-686 |
NN |
denotes |
GCC |
T1679 |
687-690 |
NN |
denotes |
GGA |
T1680 |
691-694 |
NN |
denotes |
TCC |
T1681 |
695-698 |
NN |
denotes |
GCG |
T1682 |
699-702 |
NN |
denotes |
GCC |
T1683 |
703-706 |
NN |
denotes |
GCC |
T1684 |
707-710 |
NN |
denotes |
GTC |
T1685 |
711-714 |
NN |
denotes |
GAG |
T1686 |
715-718 |
NN |
denotes |
TTT |
T1687 |
719-722 |
NN |
denotes |
ACC |
T1688 |
723-726 |
NN |
denotes |
ACT |
T1689 |
727-730 |
NN |
denotes |
CCC |
T1690 |
731-734 |
NN |
denotes |
TAT |
T1676 |
735-736 |
NN |
denotes |
C |
T1691 |
736-737 |
: |
denotes |
; |
T1692 |
738-745 |
NN |
denotes |
reverse |
T1693 |
745-747 |
: |
denotes |
: |
T1694 |
747-750 |
NN |
denotes |
GCC |
T1695 |
751-754 |
NN |
denotes |
GGA |
T1696 |
755-758 |
NN |
denotes |
TCC |
T1697 |
759-762 |
NN |
denotes |
ACT |
T1698 |
763-766 |
NN |
denotes |
CTA |
T1699 |
767-770 |
NN |
denotes |
GAA |
T1700 |
771-774 |
NN |
denotes |
GAT |
T1701 |
775-778 |
NN |
denotes |
CCC |
T1702 |
779-782 |
NN |
denotes |
CGG |
T1703 |
783-786 |
NN |
denotes |
GTA |
T1674 |
787-790 |
NN |
denotes |
CCG |
T1704 |
790-791 |
-RRB- |
denotes |
) |
T1705 |
791-792 |
. |
denotes |
. |
T1706 |
792-1058 |
sentence |
denotes |
We then isolated the moPrP.XhoI intron by amplification with primers that added an external BamHI site to the 5′ end of exon 1 and ran through the Asp718 site of exon 2 (forward: GCC GGA TCC GAT CAG CAG ACC GAT TCT GG; reverse: GCC GGT ACC ACT AGG AAG GCA GAA TGC). |
T1707 |
793-795 |
PRP |
denotes |
We |
T1709 |
796-800 |
RB |
denotes |
then |
T1708 |
801-809 |
VBD |
denotes |
isolated |
T1710 |
810-813 |
DT |
denotes |
the |
T1712 |
814-824 |
NN |
denotes |
moPrP.XhoI |
T1711 |
825-831 |
NN |
denotes |
intron |
T1713 |
832-834 |
IN |
denotes |
by |
T1714 |
835-848 |
NN |
denotes |
amplification |
T1715 |
849-853 |
IN |
denotes |
with |
T1716 |
854-861 |
NNS |
denotes |
primers |
T1717 |
862-866 |
WDT |
denotes |
that |
T1718 |
867-872 |
VBD |
denotes |
added |
T1719 |
873-875 |
DT |
denotes |
an |
T1721 |
876-884 |
JJ |
denotes |
external |
T1722 |
885-890 |
NN |
denotes |
BamHI |
T1720 |
891-895 |
NN |
denotes |
site |
T1723 |
896-898 |
IN |
denotes |
to |
T1724 |
899-902 |
DT |
denotes |
the |
T1726 |
903-904 |
CD |
denotes |
5 |
T1727 |
904-905 |
SYM |
denotes |
′ |
T1725 |
906-909 |
NN |
denotes |
end |
T1728 |
910-912 |
IN |
denotes |
of |
T1729 |
913-917 |
NN |
denotes |
exon |
T1730 |
918-919 |
CD |
denotes |
1 |
T1731 |
920-923 |
CC |
denotes |
and |
T1732 |
924-927 |
VBD |
denotes |
ran |
T1733 |
928-935 |
IN |
denotes |
through |
T1734 |
936-939 |
DT |
denotes |
the |
T1736 |
940-946 |
NN |
denotes |
Asp718 |
T1735 |
947-951 |
NN |
denotes |
site |
T1737 |
952-954 |
IN |
denotes |
of |
T1738 |
955-959 |
NN |
denotes |
exon |
T1739 |
960-961 |
CD |
denotes |
2 |
T1740 |
962-963 |
-LRB- |
denotes |
( |
T1742 |
963-970 |
NN |
denotes |
forward |
T1744 |
970-972 |
: |
denotes |
: |
T1745 |
972-975 |
NN |
denotes |
GCC |
T1746 |
976-979 |
NN |
denotes |
GGA |
T1747 |
980-983 |
NN |
denotes |
TCC |
T1748 |
984-987 |
NN |
denotes |
GAT |
T1749 |
988-991 |
NN |
denotes |
CAG |
T1750 |
992-995 |
NN |
denotes |
CAG |
T1751 |
996-999 |
NN |
denotes |
ACC |
T1752 |
1000-1003 |
NN |
denotes |
GAT |
T1753 |
1004-1007 |
NN |
denotes |
TCT |
T1743 |
1008-1010 |
NN |
denotes |
GG |
T1754 |
1010-1011 |
: |
denotes |
; |
T1755 |
1012-1019 |
NN |
denotes |
reverse |
T1756 |
1019-1021 |
: |
denotes |
: |
T1757 |
1021-1024 |
NN |
denotes |
GCC |
T1758 |
1025-1028 |
NN |
denotes |
GGT |
T1759 |
1029-1032 |
NN |
denotes |
ACC |
T1760 |
1033-1036 |
NN |
denotes |
ACT |
T1761 |
1037-1040 |
NN |
denotes |
AGG |
T1762 |
1041-1044 |
NN |
denotes |
AAG |
T1763 |
1045-1048 |
NN |
denotes |
GCA |
T1764 |
1049-1052 |
NN |
denotes |
GAA |
T1741 |
1053-1056 |
NN |
denotes |
TGC |
T1765 |
1056-1057 |
-RRB- |
denotes |
) |
T1766 |
1057-1058 |
. |
denotes |
. |
T1767 |
1058-1409 |
sentence |
denotes |
This 2-kb intron fragment was cloned into a TA cloning vector (Invitrogen, Carlsbad, California, United States), then excised by Asp718 digestion and ligated to the 6.8-kb Asp718 fragment of moPrP.XhoI containing exon 2, exon 3, the 3′ UTR, and pBluescript to generate an intermediate vector with all three exons and a central intron but no promoter. |
T1768 |
1059-1063 |
DT |
denotes |
This |
T1770 |
1064-1065 |
CD |
denotes |
2 |
T1772 |
1065-1066 |
HYPH |
denotes |
- |
T1771 |
1066-1068 |
NN |
denotes |
kb |
T1773 |
1069-1075 |
NN |
denotes |
intron |
T1769 |
1076-1084 |
NN |
denotes |
fragment |
T1775 |
1085-1088 |
VBD |
denotes |
was |
T1774 |
1089-1095 |
VBN |
denotes |
cloned |
T1776 |
1096-1100 |
IN |
denotes |
into |
T1777 |
1101-1102 |
DT |
denotes |
a |
T1779 |
1103-1105 |
NN |
denotes |
TA |
T1780 |
1106-1113 |
NN |
denotes |
cloning |
T1778 |
1114-1120 |
NN |
denotes |
vector |
T1781 |
1121-1122 |
-LRB- |
denotes |
( |
T1782 |
1122-1132 |
NNP |
denotes |
Invitrogen |
T1783 |
1132-1134 |
, |
denotes |
, |
T1784 |
1134-1142 |
NNP |
denotes |
Carlsbad |
T1785 |
1142-1144 |
, |
denotes |
, |
T1786 |
1144-1154 |
NNP |
denotes |
California |
T1787 |
1154-1156 |
, |
denotes |
, |
T1788 |
1156-1162 |
NNP |
denotes |
United |
T1789 |
1163-1169 |
NNP |
denotes |
States |
T1790 |
1169-1170 |
-RRB- |
denotes |
) |
T1791 |
1170-1172 |
, |
denotes |
, |
T1792 |
1172-1176 |
RB |
denotes |
then |
T1793 |
1177-1184 |
VBN |
denotes |
excised |
T1794 |
1185-1187 |
IN |
denotes |
by |
T1795 |
1188-1194 |
NN |
denotes |
Asp718 |
T1796 |
1195-1204 |
NN |
denotes |
digestion |
T1797 |
1205-1208 |
CC |
denotes |
and |
T1798 |
1209-1216 |
VBN |
denotes |
ligated |
T1799 |
1217-1219 |
IN |
denotes |
to |
T1800 |
1220-1223 |
DT |
denotes |
the |
T1802 |
1224-1227 |
CD |
denotes |
6.8 |
T1804 |
1227-1228 |
HYPH |
denotes |
- |
T1803 |
1228-1230 |
NN |
denotes |
kb |
T1805 |
1231-1237 |
NN |
denotes |
Asp718 |
T1801 |
1238-1246 |
NN |
denotes |
fragment |
T1806 |
1247-1249 |
IN |
denotes |
of |
T1807 |
1250-1260 |
NN |
denotes |
moPrP.XhoI |
T1808 |
1261-1271 |
VBG |
denotes |
containing |
T1809 |
1272-1276 |
NN |
denotes |
exon |
T1810 |
1277-1278 |
CD |
denotes |
2 |
T1811 |
1278-1280 |
, |
denotes |
, |
T1812 |
1280-1284 |
NN |
denotes |
exon |
T1813 |
1285-1286 |
CD |
denotes |
3 |
T1814 |
1286-1288 |
, |
denotes |
, |
T1815 |
1288-1291 |
DT |
denotes |
the |
T1817 |
1292-1293 |
CD |
denotes |
3 |
T1818 |
1293-1294 |
SYM |
denotes |
′ |
T1816 |
1295-1298 |
NN |
denotes |
UTR |
T1819 |
1298-1300 |
, |
denotes |
, |
T1820 |
1300-1303 |
CC |
denotes |
and |
T1821 |
1304-1315 |
NN |
denotes |
pBluescript |
T1822 |
1316-1318 |
TO |
denotes |
to |
T1823 |
1319-1327 |
VB |
denotes |
generate |
T1824 |
1328-1330 |
DT |
denotes |
an |
T1826 |
1331-1343 |
JJ |
denotes |
intermediate |
T1825 |
1344-1350 |
NN |
denotes |
vector |
T1827 |
1351-1355 |
IN |
denotes |
with |
T1828 |
1356-1359 |
DT |
denotes |
all |
T1830 |
1360-1365 |
CD |
denotes |
three |
T1829 |
1366-1371 |
NNS |
denotes |
exons |
T1831 |
1372-1375 |
CC |
denotes |
and |
T1832 |
1376-1377 |
DT |
denotes |
a |
T1834 |
1378-1385 |
JJ |
denotes |
central |
T1833 |
1386-1392 |
NN |
denotes |
intron |
T1835 |
1393-1396 |
CC |
denotes |
but |
T1836 |
1397-1399 |
DT |
denotes |
no |
T1837 |
1400-1408 |
NN |
denotes |
promoter |
T1838 |
1408-1409 |
. |
denotes |
. |
T1839 |
1409-1564 |
sentence |
denotes |
This vector was then opened at the BamHI site introduced by the intron cloning primer, and ligated to the 0.5-kb BamHI-cut tetracycline promoter fragment. |
T1840 |
1410-1414 |
DT |
denotes |
This |
T1841 |
1415-1421 |
NN |
denotes |
vector |
T1843 |
1422-1425 |
VBD |
denotes |
was |
T1844 |
1426-1430 |
RB |
denotes |
then |
T1842 |
1431-1437 |
VBN |
denotes |
opened |
T1845 |
1438-1440 |
IN |
denotes |
at |
T1846 |
1441-1444 |
DT |
denotes |
the |
T1848 |
1445-1450 |
NN |
denotes |
BamHI |
T1847 |
1451-1455 |
NN |
denotes |
site |
T1849 |
1456-1466 |
VBN |
denotes |
introduced |
T1850 |
1467-1469 |
IN |
denotes |
by |
T1851 |
1470-1473 |
DT |
denotes |
the |
T1853 |
1474-1480 |
NN |
denotes |
intron |
T1854 |
1481-1488 |
NN |
denotes |
cloning |
T1852 |
1489-1495 |
NN |
denotes |
primer |
T1855 |
1495-1497 |
, |
denotes |
, |
T1856 |
1497-1500 |
CC |
denotes |
and |
T1857 |
1501-1508 |
VBN |
denotes |
ligated |
T1858 |
1509-1511 |
IN |
denotes |
to |
T1859 |
1512-1515 |
DT |
denotes |
the |
T1861 |
1516-1519 |
CD |
denotes |
0.5 |
T1863 |
1519-1520 |
HYPH |
denotes |
- |
T1862 |
1520-1522 |
NN |
denotes |
kb |
T1864 |
1523-1528 |
NN |
denotes |
BamHI |
T1866 |
1528-1529 |
HYPH |
denotes |
- |
T1865 |
1529-1532 |
NN |
denotes |
cut |
T1867 |
1533-1545 |
NN |
denotes |
tetracycline |
T1868 |
1546-1554 |
NN |
denotes |
promoter |
T1860 |
1555-1563 |
NN |
denotes |
fragment |
T1869 |
1563-1564 |
. |
denotes |
. |
T1870 |
1564-1780 |
sentence |
denotes |
This ligation generated a 9.3-kb vector encoding the tetracycline promoter from pTetSplice with two exons, one intron, and the original 3′ UTR of the moPrP.XhoI vector, all carried in the pBluescript cloning vector. |
T1871 |
1565-1569 |
DT |
denotes |
This |
T1872 |
1570-1578 |
NN |
denotes |
ligation |
T1873 |
1579-1588 |
VBD |
denotes |
generated |
T1874 |
1589-1590 |
DT |
denotes |
a |
T1876 |
1591-1594 |
CD |
denotes |
9.3 |
T1878 |
1594-1595 |
HYPH |
denotes |
- |
T1877 |
1595-1597 |
NN |
denotes |
kb |
T1875 |
1598-1604 |
NN |
denotes |
vector |
T1879 |
1605-1613 |
VBG |
denotes |
encoding |
T1880 |
1614-1617 |
DT |
denotes |
the |
T1882 |
1618-1630 |
NN |
denotes |
tetracycline |
T1881 |
1631-1639 |
NN |
denotes |
promoter |
T1883 |
1640-1644 |
IN |
denotes |
from |
T1884 |
1645-1655 |
NN |
denotes |
pTetSplice |
T1885 |
1656-1660 |
IN |
denotes |
with |
T1886 |
1661-1664 |
CD |
denotes |
two |
T1887 |
1665-1670 |
NNS |
denotes |
exons |
T1888 |
1670-1672 |
, |
denotes |
, |
T1889 |
1672-1675 |
CD |
denotes |
one |
T1890 |
1676-1682 |
NN |
denotes |
intron |
T1891 |
1682-1684 |
, |
denotes |
, |
T1892 |
1684-1687 |
CC |
denotes |
and |
T1893 |
1688-1691 |
DT |
denotes |
the |
T1895 |
1692-1700 |
JJ |
denotes |
original |
T1896 |
1701-1702 |
CD |
denotes |
3 |
T1897 |
1702-1703 |
SYM |
denotes |
′ |
T1894 |
1704-1707 |
NN |
denotes |
UTR |
T1898 |
1708-1710 |
IN |
denotes |
of |
T1899 |
1711-1714 |
DT |
denotes |
the |
T1901 |
1715-1725 |
NN |
denotes |
moPrP.XhoI |
T1900 |
1726-1732 |
NN |
denotes |
vector |
T1902 |
1732-1734 |
, |
denotes |
, |
T1903 |
1734-1737 |
RB |
denotes |
all |
T1904 |
1738-1745 |
VBN |
denotes |
carried |
T1905 |
1746-1748 |
IN |
denotes |
in |
T1906 |
1749-1752 |
DT |
denotes |
the |
T1908 |
1753-1764 |
NNP |
denotes |
pBluescript |
T1909 |
1765-1772 |
NN |
denotes |
cloning |
T1907 |
1773-1779 |
NN |
denotes |
vector |
T1910 |
1779-1780 |
. |
denotes |
. |
T1911 |
1780-2230 |
sentence |
denotes |
We incorporated the Swedish (KM570/571NL) and Indiana (V617F) mutations into the mo/huAPP695 cDNA (in BS-KS) by PCR using a four-primer strategy: first, two partially overlapping products were generated in separate reactions using primers that encode the desired mutations (Swedish forward: GGA GAT CTC TGA AGT GAA TCT GGA TGC AGA ATT CCG/Indiana reverse: GGG TGA TGA AAA TCA CGG TTG C; Indiana forward: CAA CCG TGA TTT TCA TCA CCC TGG/M13 reverse). |
T1912 |
1781-1783 |
PRP |
denotes |
We |
T1913 |
1784-1796 |
VBD |
denotes |
incorporated |
T1915 |
1797-1800 |
DT |
denotes |
the |
T1917 |
1801-1808 |
NNP |
denotes |
Swedish |
T1918 |
1809-1810 |
-LRB- |
denotes |
( |
T1920 |
1810-1815 |
NN |
denotes |
KM570 |
T1921 |
1815-1816 |
HYPH |
denotes |
/ |
T1919 |
1816-1821 |
NN |
denotes |
571NL |
T1922 |
1821-1822 |
-RRB- |
denotes |
) |
T1923 |
1823-1826 |
CC |
denotes |
and |
T1924 |
1827-1834 |
NNP |
denotes |
Indiana |
T1925 |
1835-1836 |
-LRB- |
denotes |
( |
T1926 |
1836-1841 |
NN |
denotes |
V617F |
T1927 |
1841-1842 |
-RRB- |
denotes |
) |
T1916 |
1843-1852 |
NNS |
denotes |
mutations |
T1928 |
1853-1857 |
IN |
denotes |
into |
T1929 |
1858-1861 |
DT |
denotes |
the |
T1931 |
1862-1864 |
NN |
denotes |
mo |
T1933 |
1864-1865 |
HYPH |
denotes |
/ |
T1932 |
1865-1873 |
NN |
denotes |
huAPP695 |
T1930 |
1874-1878 |
NN |
denotes |
cDNA |
T1934 |
1879-1880 |
-LRB- |
denotes |
( |
T1935 |
1880-1882 |
IN |
denotes |
in |
T1936 |
1883-1885 |
NN |
denotes |
BS |
T1938 |
1885-1886 |
HYPH |
denotes |
- |
T1937 |
1886-1888 |
NN |
denotes |
KS |
T1939 |
1888-1889 |
-RRB- |
denotes |
) |
T1940 |
1890-1892 |
IN |
denotes |
by |
T1941 |
1893-1896 |
NN |
denotes |
PCR |
T1942 |
1897-1902 |
VBG |
denotes |
using |
T1943 |
1903-1904 |
DT |
denotes |
a |
T1945 |
1905-1909 |
CD |
denotes |
four |
T1947 |
1909-1910 |
HYPH |
denotes |
- |
T1946 |
1910-1916 |
NN |
denotes |
primer |
T1944 |
1917-1925 |
NN |
denotes |
strategy |
T1948 |
1925-1927 |
: |
denotes |
: |
T1949 |
1927-1932 |
RB |
denotes |
first |
T1950 |
1932-1934 |
, |
denotes |
, |
T1951 |
1934-1937 |
CD |
denotes |
two |
T1953 |
1938-1947 |
RB |
denotes |
partially |
T1954 |
1948-1959 |
VBG |
denotes |
overlapping |
T1952 |
1960-1968 |
NNS |
denotes |
products |
T1955 |
1969-1973 |
VBD |
denotes |
were |
T1914 |
1974-1983 |
VBN |
denotes |
generated |
T1956 |
1984-1986 |
IN |
denotes |
in |
T1957 |
1987-1995 |
JJ |
denotes |
separate |
T1958 |
1996-2005 |
NNS |
denotes |
reactions |
T1959 |
2006-2011 |
VBG |
denotes |
using |
T1960 |
2012-2019 |
NNS |
denotes |
primers |
T1961 |
2020-2024 |
WDT |
denotes |
that |
T1962 |
2025-2031 |
VBP |
denotes |
encode |
T1963 |
2032-2035 |
DT |
denotes |
the |
T1965 |
2036-2043 |
VBN |
denotes |
desired |
T1964 |
2044-2053 |
NNS |
denotes |
mutations |
T1966 |
2054-2055 |
-LRB- |
denotes |
( |
T1968 |
2055-2062 |
NNP |
denotes |
Swedish |
T1969 |
2063-2070 |
NN |
denotes |
forward |
T1971 |
2070-2072 |
: |
denotes |
: |
T1972 |
2072-2075 |
NN |
denotes |
GGA |
T1973 |
2076-2079 |
NN |
denotes |
GAT |
T1974 |
2080-2083 |
NN |
denotes |
CTC |
T1975 |
2084-2087 |
NN |
denotes |
TGA |
T1976 |
2088-2091 |
NN |
denotes |
AGT |
T1977 |
2092-2095 |
NN |
denotes |
GAA |
T1978 |
2096-2099 |
NN |
denotes |
TCT |
T1979 |
2100-2103 |
NNP |
denotes |
GGA |
T1980 |
2104-2107 |
NNP |
denotes |
TGC |
T1981 |
2108-2111 |
NNP |
denotes |
AGA |
T1982 |
2112-2115 |
NNP |
denotes |
ATT |
T1970 |
2116-2119 |
NN |
denotes |
CCG |
T1984 |
2119-2120 |
HYPH |
denotes |
/ |
T1985 |
2120-2127 |
NNP |
denotes |
Indiana |
T1986 |
2128-2135 |
NN |
denotes |
reverse |
T1987 |
2135-2137 |
: |
denotes |
: |
T1988 |
2137-2140 |
NN |
denotes |
GGG |
T1989 |
2141-2144 |
NN |
denotes |
TGA |
T1990 |
2145-2148 |
NN |
denotes |
TGA |
T1991 |
2149-2152 |
NN |
denotes |
AAA |
T1992 |
2153-2156 |
NN |
denotes |
TCA |
T1993 |
2157-2160 |
NN |
denotes |
CGG |
T1994 |
2161-2164 |
NN |
denotes |
TTG |
T1983 |
2165-2166 |
NN |
denotes |
C |
T1995 |
2166-2167 |
: |
denotes |
; |
T1996 |
2168-2175 |
NNP |
denotes |
Indiana |
T1997 |
2176-2183 |
NN |
denotes |
forward |
T1998 |
2183-2185 |
: |
denotes |
: |
T1999 |
2185-2188 |
NN |
denotes |
CAA |
T2000 |
2189-2192 |
NN |
denotes |
CCG |
T2001 |
2193-2196 |
NN |
denotes |
TGA |
T2002 |
2197-2200 |
NN |
denotes |
TTT |
T2003 |
2201-2204 |
NN |
denotes |
TCA |
T2004 |
2205-2208 |
NN |
denotes |
TCA |
T2005 |
2209-2212 |
NN |
denotes |
CCC |
T2006 |
2213-2216 |
NN |
denotes |
TGG |
T2007 |
2216-2217 |
HYPH |
denotes |
/ |
T1967 |
2217-2220 |
NN |
denotes |
M13 |
T2008 |
2221-2228 |
RB |
denotes |
reverse |
T2009 |
2228-2229 |
-RRB- |
denotes |
) |
T2010 |
2229-2230 |
. |
denotes |
. |
T2011 |
2230-2354 |
sentence |
denotes |
The two PCR products were ligated, digested with BglII and ApaI and cloned back into the original mo/huAPP695-BS-KS vector. |
T2012 |
2231-2234 |
DT |
denotes |
The |
T2014 |
2235-2238 |
CD |
denotes |
two |
T2015 |
2239-2242 |
NN |
denotes |
PCR |
T2013 |
2243-2251 |
NNS |
denotes |
products |
T2017 |
2252-2256 |
VBD |
denotes |
were |
T2016 |
2257-2264 |
VBN |
denotes |
ligated |
T2018 |
2264-2266 |
, |
denotes |
, |
T2019 |
2266-2274 |
VBN |
denotes |
digested |
T2020 |
2275-2279 |
IN |
denotes |
with |
T2021 |
2280-2285 |
NN |
denotes |
BglII |
T2022 |
2286-2289 |
CC |
denotes |
and |
T2023 |
2290-2294 |
NN |
denotes |
ApaI |
T2024 |
2295-2298 |
CC |
denotes |
and |
T2025 |
2299-2305 |
VBN |
denotes |
cloned |
T2026 |
2306-2310 |
RB |
denotes |
back |
T2027 |
2311-2315 |
IN |
denotes |
into |
T2028 |
2316-2319 |
DT |
denotes |
the |
T2030 |
2320-2328 |
JJ |
denotes |
original |
T2031 |
2329-2331 |
NN |
denotes |
mo |
T2033 |
2331-2332 |
HYPH |
denotes |
/ |
T2034 |
2332-2340 |
NN |
denotes |
huAPP695 |
T2035 |
2340-2341 |
HYPH |
denotes |
- |
T2036 |
2341-2343 |
NN |
denotes |
BS |
T2037 |
2343-2344 |
HYPH |
denotes |
- |
T2032 |
2344-2346 |
NN |
denotes |
KS |
T2029 |
2347-2353 |
NN |
denotes |
vector |
T2038 |
2353-2354 |
. |
denotes |
. |
T2039 |
2354-2481 |
sentence |
denotes |
Finally, the new APP695swe/ind was subcloned into the XhoI site of the moPrP-tetP vector from above to complete the construct. |
T2040 |
2355-2362 |
RB |
denotes |
Finally |
T2042 |
2362-2364 |
, |
denotes |
, |
T2043 |
2364-2367 |
DT |
denotes |
the |
T2045 |
2368-2371 |
JJ |
denotes |
new |
T2046 |
2372-2381 |
NN |
denotes |
APP695swe |
T2047 |
2381-2382 |
HYPH |
denotes |
/ |
T2044 |
2382-2385 |
NN |
denotes |
ind |
T2048 |
2386-2389 |
VBD |
denotes |
was |
T2041 |
2390-2399 |
VBN |
denotes |
subcloned |
T2049 |
2400-2404 |
IN |
denotes |
into |
T2050 |
2405-2408 |
DT |
denotes |
the |
T2052 |
2409-2413 |
NN |
denotes |
XhoI |
T2051 |
2414-2418 |
NN |
denotes |
site |
T2053 |
2419-2421 |
IN |
denotes |
of |
T2054 |
2422-2425 |
DT |
denotes |
the |
T2056 |
2426-2431 |
NN |
denotes |
moPrP |
T2058 |
2431-2432 |
HYPH |
denotes |
- |
T2057 |
2432-2436 |
NN |
denotes |
tetP |
T2055 |
2437-2443 |
NN |
denotes |
vector |
T2059 |
2444-2448 |
IN |
denotes |
from |
T2060 |
2449-2454 |
RB |
denotes |
above |
T2061 |
2455-2457 |
TO |
denotes |
to |
T2062 |
2458-2466 |
VB |
denotes |
complete |
T2063 |
2467-2470 |
DT |
denotes |
the |
T2064 |
2471-2480 |
NN |
denotes |
construct |
T2065 |
2480-2481 |
. |
denotes |
. |
R1000 |
T1625 |
T1626 |
det |
the,promoter |
R1001 |
T1626 |
T1624 |
dobj |
promoter,cloning |
R1002 |
T1627 |
T1628 |
npadvmod |
tetracycline,responsive |
R1003 |
T1628 |
T1626 |
amod |
responsive,promoter |
R1004 |
T1629 |
T1628 |
punct |
-,responsive |
R1005 |
T1630 |
T1631 |
punct |
(,6 |
R1006 |
T1631 |
T1626 |
parataxis |
6,promoter |
R1007 |
T1632 |
T1631 |
nmod |
bp,6 |
R1008 |
T1633 |
T1634 |
punct |
–,481 |
R1009 |
T1634 |
T1631 |
prep |
481,6 |
R1010 |
T1635 |
T1631 |
punct |
),6 |
R1011 |
T1636 |
T1624 |
prep |
from,cloning |
R1012 |
T1637 |
T1636 |
pobj |
pTetSplice,from |
R1013 |
T1638 |
T1637 |
prep |
by,pTetSplice |
R1014 |
T1639 |
T1638 |
pobj |
PCR,by |
R1015 |
T1640 |
T1639 |
acl |
using,PCR |
R1016 |
T1641 |
T1640 |
dobj |
primers,using |
R1017 |
T1642 |
T1643 |
dep |
that,added |
R1018 |
T1643 |
T1641 |
relcl |
added,primers |
R1019 |
T1644 |
T1645 |
amod |
external,sites |
R1020 |
T1645 |
T1643 |
dobj |
sites,added |
R1021 |
T1646 |
T1645 |
nmod |
BamHI,sites |
R1022 |
T1647 |
T1646 |
cc |
and,BamHI |
R1023 |
T1648 |
T1646 |
conj |
NotI,BamHI |
R1024 |
T1649 |
T1643 |
prep |
to,added |
R1025 |
T1650 |
T1651 |
det |
the,end |
R1026 |
T1651 |
T1649 |
pobj |
end,to |
R1027 |
T1652 |
T1651 |
nummod |
5,end |
R1028 |
T1653 |
T1652 |
punct |
′,5 |
R1029 |
T1654 |
T1643 |
cc |
and,added |
R1030 |
T1655 |
T1656 |
det |
a,site |
R1031 |
T1656 |
T1643 |
conj |
site,added |
R1032 |
T1657 |
T1656 |
compound |
BamHI,site |
R1033 |
T1658 |
T1656 |
prep |
to,site |
R1034 |
T1659 |
T1660 |
det |
the,end |
R1035 |
T1660 |
T1658 |
pobj |
end,to |
R1036 |
T1661 |
T1660 |
nummod |
3,end |
R1037 |
T1662 |
T1661 |
punct |
′,3 |
R1038 |
T1663 |
T1622 |
punct |
", ",began |
R1039 |
T1664 |
T1665 |
mark |
while,destroying |
R1040 |
T1665 |
T1622 |
advcl |
destroying,began |
R1041 |
T1666 |
T1667 |
nmod |
XhoI,sites |
R1042 |
T1667 |
T1665 |
dobj |
sites,destroying |
R1043 |
T1668 |
T1666 |
cc |
and,XhoI |
R1044 |
T1669 |
T1666 |
conj |
BamHI,XhoI |
R1045 |
T1670 |
T1667 |
prep |
within,sites |
R1046 |
T1671 |
T1672 |
det |
the,promoter |
R1047 |
T1672 |
T1670 |
pobj |
promoter,within |
R1048 |
T1673 |
T1674 |
punct |
(,CCG |
R1049 |
T1674 |
T1665 |
parataxis |
CCG,destroying |
R1050 |
T1675 |
T1676 |
dep |
forward,C |
R1051 |
T1676 |
T1674 |
dep |
C,CCG |
R1052 |
T1677 |
T1676 |
punct |
: ,C |
R1053 |
T1678 |
T1676 |
compound |
GCC,C |
R1054 |
T1679 |
T1676 |
compound |
GGA,C |
R1055 |
T1680 |
T1676 |
compound |
TCC,C |
R1056 |
T1681 |
T1676 |
compound |
GCG,C |
R1057 |
T1682 |
T1676 |
compound |
GCC,C |
R1058 |
T1683 |
T1676 |
compound |
GCC,C |
R1059 |
T1684 |
T1676 |
compound |
GTC,C |
R1060 |
T1685 |
T1676 |
compound |
GAG,C |
R1061 |
T1686 |
T1676 |
compound |
TTT,C |
R1062 |
T1687 |
T1676 |
compound |
ACC,C |
R1063 |
T1688 |
T1676 |
compound |
ACT,C |
R1064 |
T1689 |
T1676 |
compound |
CCC,C |
R1065 |
T1690 |
T1676 |
compound |
TAT,C |
R1066 |
T1691 |
T1674 |
punct |
;,CCG |
R1067 |
T1692 |
T1674 |
dep |
reverse,CCG |
R1068 |
T1693 |
T1674 |
punct |
: ,CCG |
R1069 |
T1694 |
T1674 |
compound |
GCC,CCG |
R1070 |
T1695 |
T1674 |
compound |
GGA,CCG |
R1071 |
T1696 |
T1674 |
compound |
TCC,CCG |
R1072 |
T1697 |
T1674 |
compound |
ACT,CCG |
R1073 |
T1698 |
T1674 |
compound |
CTA,CCG |
R1074 |
T1699 |
T1674 |
compound |
GAA,CCG |
R1075 |
T1700 |
T1674 |
compound |
GAT,CCG |
R1076 |
T1701 |
T1674 |
compound |
CCC,CCG |
R1077 |
T1702 |
T1674 |
compound |
CGG,CCG |
R1078 |
T1703 |
T1674 |
compound |
GTA,CCG |
R1079 |
T1704 |
T1674 |
punct |
),CCG |
R1080 |
T1705 |
T1622 |
punct |
.,began |
R1081 |
T1707 |
T1708 |
nsubj |
We,isolated |
R1082 |
T1709 |
T1708 |
advmod |
then,isolated |
R1083 |
T1710 |
T1711 |
det |
the,intron |
R1084 |
T1711 |
T1708 |
dobj |
intron,isolated |
R1085 |
T1712 |
T1711 |
compound |
moPrP.XhoI,intron |
R1086 |
T1713 |
T1708 |
prep |
by,isolated |
R1087 |
T1714 |
T1713 |
pobj |
amplification,by |
R1088 |
T1715 |
T1714 |
prep |
with,amplification |
R1089 |
T1716 |
T1715 |
pobj |
primers,with |
R1090 |
T1717 |
T1718 |
dep |
that,added |
R1091 |
T1718 |
T1716 |
relcl |
added,primers |
R1092 |
T1719 |
T1720 |
det |
an,site |
R1093 |
T1720 |
T1718 |
dobj |
site,added |
R1094 |
T1721 |
T1720 |
amod |
external,site |
R1095 |
T1722 |
T1720 |
compound |
BamHI,site |
R1096 |
T1723 |
T1718 |
prep |
to,added |
R1097 |
T1724 |
T1725 |
det |
the,end |
R1098 |
T1725 |
T1723 |
pobj |
end,to |
R1099 |
T1726 |
T1725 |
nummod |
5,end |
R1100 |
T1727 |
T1726 |
punct |
′,5 |
R1101 |
T1728 |
T1725 |
prep |
of,end |
R1102 |
T1729 |
T1728 |
pobj |
exon,of |
R1103 |
T1730 |
T1729 |
nummod |
1,exon |
R1104 |
T1731 |
T1718 |
cc |
and,added |
R1105 |
T1732 |
T1718 |
conj |
ran,added |
R1106 |
T1733 |
T1732 |
prep |
through,ran |
R1107 |
T1734 |
T1735 |
det |
the,site |
R1108 |
T1735 |
T1733 |
pobj |
site,through |
R1109 |
T1736 |
T1735 |
compound |
Asp718,site |
R1110 |
T1737 |
T1735 |
prep |
of,site |
R1111 |
T1738 |
T1737 |
pobj |
exon,of |
R1112 |
T1739 |
T1738 |
nummod |
2,exon |
R1113 |
T1740 |
T1741 |
punct |
(,TGC |
R1114 |
T1741 |
T1735 |
parataxis |
TGC,site |
R1115 |
T1742 |
T1743 |
dep |
forward,GG |
R1116 |
T1743 |
T1741 |
dep |
GG,TGC |
R1117 |
T1744 |
T1743 |
punct |
: ,GG |
R1118 |
T1745 |
T1743 |
compound |
GCC,GG |
R1119 |
T1746 |
T1743 |
compound |
GGA,GG |
R1120 |
T1747 |
T1743 |
compound |
TCC,GG |
R1121 |
T1748 |
T1743 |
compound |
GAT,GG |
R1122 |
T1749 |
T1743 |
compound |
CAG,GG |
R1123 |
T1750 |
T1743 |
compound |
CAG,GG |
R1124 |
T1751 |
T1743 |
compound |
ACC,GG |
R1125 |
T1752 |
T1743 |
compound |
GAT,GG |
R1126 |
T1753 |
T1743 |
compound |
TCT,GG |
R1127 |
T1754 |
T1741 |
punct |
;,TGC |
R1128 |
T1755 |
T1741 |
dep |
reverse,TGC |
R1129 |
T1756 |
T1741 |
punct |
: ,TGC |
R1130 |
T1757 |
T1741 |
compound |
GCC,TGC |
R1131 |
T1758 |
T1741 |
compound |
GGT,TGC |
R1132 |
T1759 |
T1741 |
compound |
ACC,TGC |
R1133 |
T1760 |
T1741 |
compound |
ACT,TGC |
R1134 |
T1761 |
T1741 |
compound |
AGG,TGC |
R1135 |
T1762 |
T1741 |
compound |
AAG,TGC |
R1136 |
T1763 |
T1741 |
compound |
GCA,TGC |
R1137 |
T1764 |
T1741 |
compound |
GAA,TGC |
R1138 |
T1765 |
T1741 |
punct |
),TGC |
R1139 |
T1766 |
T1708 |
punct |
.,isolated |
R1140 |
T1768 |
T1769 |
det |
This,fragment |
R1141 |
T1769 |
T1774 |
nsubj |
fragment,cloned |
R1142 |
T1770 |
T1771 |
nummod |
2,kb |
R1143 |
T1771 |
T1769 |
compound |
kb,fragment |
R1144 |
T1772 |
T1771 |
punct |
-,kb |
R1145 |
T1773 |
T1769 |
compound |
intron,fragment |
R1146 |
T1775 |
T1774 |
aux |
was,cloned |
R1147 |
T1776 |
T1774 |
prep |
into,cloned |
R1148 |
T1777 |
T1778 |
det |
a,vector |
R1149 |
T1778 |
T1776 |
pobj |
vector,into |
R1150 |
T1779 |
T1780 |
compound |
TA,cloning |
R1151 |
T1780 |
T1778 |
compound |
cloning,vector |
R1152 |
T1781 |
T1782 |
punct |
(,Invitrogen |
R1153 |
T1782 |
T1778 |
parataxis |
Invitrogen,vector |
R1154 |
T1783 |
T1782 |
punct |
", ",Invitrogen |
R1155 |
T1784 |
T1782 |
npadvmod |
Carlsbad,Invitrogen |
R1156 |
T1785 |
T1782 |
punct |
", ",Invitrogen |
R1157 |
T1786 |
T1782 |
npadvmod |
California,Invitrogen |
R1158 |
T1787 |
T1782 |
punct |
", ",Invitrogen |
R1159 |
T1788 |
T1789 |
compound |
United,States |
R1160 |
T1789 |
T1782 |
npadvmod |
States,Invitrogen |
R1161 |
T1790 |
T1782 |
punct |
),Invitrogen |
R1162 |
T1791 |
T1774 |
punct |
", ",cloned |
R1163 |
T1792 |
T1793 |
advmod |
then,excised |
R1164 |
T1793 |
T1774 |
conj |
excised,cloned |
R1165 |
T1794 |
T1793 |
prep |
by,excised |
R1166 |
T1795 |
T1796 |
compound |
Asp718,digestion |
R1167 |
T1796 |
T1794 |
pobj |
digestion,by |
R1168 |
T1797 |
T1793 |
cc |
and,excised |
R1169 |
T1798 |
T1793 |
conj |
ligated,excised |
R1170 |
T1799 |
T1798 |
prep |
to,ligated |
R1171 |
T1800 |
T1801 |
det |
the,fragment |
R1172 |
T1801 |
T1799 |
pobj |
fragment,to |
R1173 |
T1802 |
T1803 |
nummod |
6.8,kb |
R1174 |
T1803 |
T1801 |
compound |
kb,fragment |
R1175 |
T1804 |
T1803 |
punct |
-,kb |
R1176 |
T1805 |
T1801 |
compound |
Asp718,fragment |
R1177 |
T1806 |
T1801 |
prep |
of,fragment |
R1178 |
T1807 |
T1806 |
pobj |
moPrP.XhoI,of |
R1179 |
T1808 |
T1801 |
acl |
containing,fragment |
R1180 |
T1809 |
T1808 |
dobj |
exon,containing |
R1181 |
T1810 |
T1809 |
nummod |
2,exon |
R1182 |
T1811 |
T1809 |
punct |
", ",exon |
R1183 |
T1812 |
T1809 |
conj |
exon,exon |
R1184 |
T1813 |
T1812 |
nummod |
3,exon |
R1185 |
T1814 |
T1812 |
punct |
", ",exon |
R1186 |
T1815 |
T1816 |
det |
the,UTR |
R1187 |
T1816 |
T1812 |
conj |
UTR,exon |
R1188 |
T1817 |
T1816 |
nummod |
3,UTR |
R1189 |
T1818 |
T1817 |
punct |
′,3 |
R1190 |
T1819 |
T1816 |
punct |
", ",UTR |
R1191 |
T1820 |
T1816 |
cc |
and,UTR |
R1192 |
T1821 |
T1816 |
conj |
pBluescript,UTR |
R1193 |
T1822 |
T1823 |
aux |
to,generate |
R1194 |
T1823 |
T1774 |
advcl |
generate,cloned |
R1195 |
T1824 |
T1825 |
det |
an,vector |
R1196 |
T1825 |
T1823 |
dobj |
vector,generate |
R1197 |
T1826 |
T1825 |
amod |
intermediate,vector |
R1198 |
T1827 |
T1823 |
prep |
with,generate |
R1199 |
T1828 |
T1829 |
det |
all,exons |
R1200 |
T1829 |
T1827 |
pobj |
exons,with |
R1201 |
T1830 |
T1829 |
nummod |
three,exons |
R1202 |
T1831 |
T1829 |
cc |
and,exons |
R1203 |
T1832 |
T1833 |
det |
a,intron |
R1204 |
T1833 |
T1829 |
conj |
intron,exons |
R1205 |
T1834 |
T1833 |
amod |
central,intron |
R1206 |
T1835 |
T1829 |
cc |
but,exons |
R1207 |
T1836 |
T1837 |
det |
no,promoter |
R1208 |
T1837 |
T1829 |
conj |
promoter,exons |
R1209 |
T1838 |
T1774 |
punct |
.,cloned |
R1210 |
T1840 |
T1841 |
det |
This,vector |
R1211 |
T1841 |
T1842 |
nsubjpass |
vector,opened |
R1212 |
T1843 |
T1842 |
auxpass |
was,opened |
R1213 |
T1844 |
T1842 |
advmod |
then,opened |
R1214 |
T1845 |
T1842 |
prep |
at,opened |
R1215 |
T1846 |
T1847 |
det |
the,site |
R1216 |
T1847 |
T1845 |
pobj |
site,at |
R1217 |
T1848 |
T1847 |
compound |
BamHI,site |
R1218 |
T1849 |
T1847 |
acl |
introduced,site |
R1219 |
T1850 |
T1849 |
agent |
by,introduced |
R1220 |
T1851 |
T1852 |
det |
the,primer |
R1221 |
T1852 |
T1850 |
pobj |
primer,by |
R1222 |
T1853 |
T1852 |
compound |
intron,primer |
R1223 |
T1854 |
T1852 |
compound |
cloning,primer |
R1224 |
T1855 |
T1842 |
punct |
", ",opened |
R1225 |
T1856 |
T1842 |
cc |
and,opened |
R1226 |
T1857 |
T1842 |
conj |
ligated,opened |
R1227 |
T1858 |
T1857 |
prep |
to,ligated |
R1228 |
T1859 |
T1860 |
det |
the,fragment |
R1229 |
T1860 |
T1858 |
pobj |
fragment,to |
R1230 |
T1861 |
T1862 |
nummod |
0.5,kb |
R1231 |
T1862 |
T1860 |
compound |
kb,fragment |
R1232 |
T1863 |
T1862 |
punct |
-,kb |
R1233 |
T1864 |
T1865 |
compound |
BamHI,cut |
R1234 |
T1865 |
T1860 |
compound |
cut,fragment |
R1235 |
T1866 |
T1865 |
punct |
-,cut |
R1236 |
T1867 |
T1868 |
compound |
tetracycline,promoter |
R1237 |
T1868 |
T1860 |
compound |
promoter,fragment |
R1238 |
T1869 |
T1842 |
punct |
.,opened |
R1239 |
T1871 |
T1872 |
det |
This,ligation |
R1240 |
T1872 |
T1873 |
nsubj |
ligation,generated |
R1241 |
T1874 |
T1875 |
det |
a,vector |
R1242 |
T1875 |
T1873 |
dobj |
vector,generated |
R1243 |
T1876 |
T1877 |
nummod |
9.3,kb |
R1244 |
T1877 |
T1875 |
compound |
kb,vector |
R1245 |
T1878 |
T1877 |
punct |
-,kb |
R1246 |
T1879 |
T1875 |
acl |
encoding,vector |
R1247 |
T1880 |
T1881 |
det |
the,promoter |
R1248 |
T1881 |
T1879 |
dobj |
promoter,encoding |
R1249 |
T1882 |
T1881 |
compound |
tetracycline,promoter |
R1250 |
T1883 |
T1881 |
prep |
from,promoter |
R1251 |
T1884 |
T1883 |
pobj |
pTetSplice,from |
R1252 |
T1885 |
T1879 |
prep |
with,encoding |
R1253 |
T1886 |
T1887 |
nummod |
two,exons |
R1254 |
T1887 |
T1885 |
pobj |
exons,with |
R1255 |
T1888 |
T1887 |
punct |
", ",exons |
R1256 |
T1889 |
T1890 |
nummod |
one,intron |
R1257 |
T1890 |
T1887 |
conj |
intron,exons |
R1258 |
T1891 |
T1890 |
punct |
", ",intron |
R1259 |
T1892 |
T1890 |
cc |
and,intron |
R1260 |
T1893 |
T1894 |
det |
the,UTR |
R1261 |
T1894 |
T1890 |
conj |
UTR,intron |
R1262 |
T1895 |
T1894 |
amod |
original,UTR |
R1263 |
T1896 |
T1894 |
nummod |
3,UTR |
R1264 |
T1897 |
T1896 |
punct |
′,3 |
R1265 |
T1898 |
T1894 |
prep |
of,UTR |
R1266 |
T1899 |
T1900 |
det |
the,vector |
R1267 |
T1900 |
T1898 |
pobj |
vector,of |
R1268 |
T1901 |
T1900 |
compound |
moPrP.XhoI,vector |
R1269 |
T1902 |
T1887 |
punct |
", ",exons |
R1270 |
T1903 |
T1904 |
advmod |
all,carried |
R1271 |
T1904 |
T1887 |
acl |
carried,exons |
R1272 |
T1905 |
T1904 |
prep |
in,carried |
R1273 |
T1906 |
T1907 |
det |
the,vector |
R1274 |
T1907 |
T1905 |
pobj |
vector,in |
R1275 |
T1908 |
T1909 |
compound |
pBluescript,cloning |
R1276 |
T1909 |
T1907 |
compound |
cloning,vector |
R1277 |
T1910 |
T1873 |
punct |
.,generated |
R1278 |
T1912 |
T1913 |
nsubj |
We,incorporated |
R1279 |
T1913 |
T1914 |
ccomp |
incorporated,generated |
R1280 |
T1915 |
T1916 |
det |
the,mutations |
R1281 |
T1916 |
T1913 |
dobj |
mutations,incorporated |
R1282 |
T1917 |
T1916 |
amod |
Swedish,mutations |
R1283 |
T1918 |
T1919 |
punct |
(,571NL |
R1284 |
T1919 |
T1917 |
parataxis |
571NL,Swedish |
R1285 |
T1920 |
T1919 |
compound |
KM570,571NL |
R1286 |
T1921 |
T1919 |
punct |
/,571NL |
R1287 |
T1922 |
T1919 |
punct |
),571NL |
R1288 |
T1923 |
T1917 |
cc |
and,Swedish |
R1289 |
T1924 |
T1917 |
conj |
Indiana,Swedish |
R1290 |
T1925 |
T1926 |
punct |
(,V617F |
R1291 |
T1926 |
T1924 |
parataxis |
V617F,Indiana |
R1292 |
T1927 |
T1926 |
punct |
),V617F |
R1293 |
T1928 |
T1913 |
prep |
into,incorporated |
R1294 |
T1929 |
T1930 |
det |
the,cDNA |
R1295 |
T1930 |
T1928 |
pobj |
cDNA,into |
R1296 |
T1931 |
T1932 |
compound |
mo,huAPP695 |
R1297 |
T1932 |
T1930 |
compound |
huAPP695,cDNA |
R1298 |
T1933 |
T1932 |
punct |
/,huAPP695 |
R1299 |
T1934 |
T1930 |
punct |
(,cDNA |
R1300 |
T1935 |
T1930 |
prep |
in,cDNA |
R1301 |
T1936 |
T1937 |
compound |
BS,KS |
R1302 |
T1937 |
T1935 |
pobj |
KS,in |
R1303 |
T1938 |
T1937 |
punct |
-,KS |
R1304 |
T1939 |
T1913 |
punct |
),incorporated |
R1305 |
T1940 |
T1913 |
prep |
by,incorporated |
R1306 |
T1941 |
T1940 |
pobj |
PCR,by |
R1307 |
T1942 |
T1913 |
advcl |
using,incorporated |
R1308 |
T1943 |
T1944 |
det |
a,strategy |
R1309 |
T1944 |
T1942 |
dobj |
strategy,using |
R1310 |
T1945 |
T1946 |
nummod |
four,primer |
R1311 |
T1946 |
T1944 |
compound |
primer,strategy |
R1312 |
T1947 |
T1946 |
punct |
-,primer |
R1313 |
T1948 |
T1914 |
punct |
: ,generated |
R1314 |
T1949 |
T1914 |
advmod |
first,generated |
R1315 |
T1950 |
T1914 |
punct |
", ",generated |
R1316 |
T1951 |
T1952 |
nummod |
two,products |
R1317 |
T1952 |
T1914 |
nsubjpass |
products,generated |
R1318 |
T1953 |
T1954 |
advmod |
partially,overlapping |
R1319 |
T1954 |
T1952 |
amod |
overlapping,products |
R1320 |
T1955 |
T1914 |
auxpass |
were,generated |
R1321 |
T1956 |
T1914 |
prep |
in,generated |
R1322 |
T1957 |
T1958 |
amod |
separate,reactions |
R1323 |
T1958 |
T1956 |
pobj |
reactions,in |
R1324 |
T1959 |
T1914 |
advcl |
using,generated |
R1325 |
T1960 |
T1959 |
dobj |
primers,using |
R1326 |
T1961 |
T1962 |
dep |
that,encode |
R1327 |
T1962 |
T1960 |
relcl |
encode,primers |
R1328 |
T1963 |
T1964 |
det |
the,mutations |
R1329 |
T1964 |
T1962 |
dobj |
mutations,encode |
R1330 |
T1965 |
T1964 |
amod |
desired,mutations |
R1331 |
T1966 |
T1967 |
punct |
(,M13 |
R1332 |
T1967 |
T1962 |
parataxis |
M13,encode |
R1333 |
T1968 |
T1969 |
compound |
Swedish,forward |
R1334 |
T1969 |
T1970 |
dep |
forward,CCG |
R1335 |
T1970 |
T1983 |
dep |
CCG,C |
R1336 |
T1971 |
T1970 |
punct |
: ,CCG |
R1337 |
T1972 |
T1970 |
compound |
GGA,CCG |
R1338 |
T1973 |
T1970 |
compound |
GAT,CCG |
R1339 |
T1974 |
T1970 |
compound |
CTC,CCG |
R1340 |
T1975 |
T1970 |
compound |
TGA,CCG |
R1341 |
T1976 |
T1970 |
compound |
AGT,CCG |
R1342 |
T1977 |
T1970 |
compound |
GAA,CCG |
R1343 |
T1978 |
T1970 |
compound |
TCT,CCG |
R1344 |
T1979 |
T1970 |
compound |
GGA,CCG |
R1345 |
T1980 |
T1970 |
compound |
TGC,CCG |
R1346 |
T1981 |
T1970 |
compound |
AGA,CCG |
R1347 |
T1982 |
T1970 |
compound |
ATT,CCG |
R1348 |
T1983 |
T1967 |
dep |
C,M13 |
R1349 |
T1984 |
T1983 |
punct |
/,C |
R1350 |
T1985 |
T1986 |
compound |
Indiana,reverse |
R1351 |
T1986 |
T1983 |
dep |
reverse,C |
R1352 |
T1987 |
T1983 |
punct |
: ,C |
R1353 |
T1988 |
T1983 |
compound |
GGG,C |
R1354 |
T1989 |
T1983 |
compound |
TGA,C |
R1355 |
T1990 |
T1983 |
compound |
TGA,C |
R1356 |
T1991 |
T1983 |
compound |
AAA,C |
R1357 |
T1992 |
T1983 |
compound |
TCA,C |
R1358 |
T1993 |
T1983 |
compound |
CGG,C |
R1359 |
T1994 |
T1983 |
compound |
TTG,C |
R1360 |
T1995 |
T1967 |
punct |
;,M13 |
R1361 |
T1996 |
T1997 |
compound |
Indiana,forward |
R1362 |
T1997 |
T1967 |
dep |
forward,M13 |
R1363 |
T1998 |
T1967 |
punct |
: ,M13 |
R1364 |
T1999 |
T1967 |
compound |
CAA,M13 |
R1365 |
T2000 |
T1967 |
compound |
CCG,M13 |
R1366 |
T2001 |
T1967 |
compound |
TGA,M13 |
R1367 |
T2002 |
T1967 |
compound |
TTT,M13 |
R1368 |
T2003 |
T1967 |
compound |
TCA,M13 |
R1369 |
T2004 |
T1967 |
compound |
TCA,M13 |
R1370 |
T2005 |
T1967 |
compound |
CCC,M13 |
R1371 |
T2006 |
T1967 |
compound |
TGG,M13 |
R1372 |
T2007 |
T1967 |
punct |
/,M13 |
R1373 |
T2008 |
T1967 |
advmod |
reverse,M13 |
R1374 |
T2009 |
T1967 |
punct |
),M13 |
R1375 |
T2010 |
T1914 |
punct |
.,generated |
R1376 |
T2012 |
T2013 |
det |
The,products |
R1377 |
T2013 |
T2016 |
nsubjpass |
products,ligated |
R1378 |
T2014 |
T2013 |
nummod |
two,products |
R1379 |
T2015 |
T2013 |
compound |
PCR,products |
R1380 |
T2017 |
T2016 |
auxpass |
were,ligated |
R1381 |
T2018 |
T2016 |
punct |
", ",ligated |
R1382 |
T2019 |
T2016 |
dep |
digested,ligated |
R1383 |
T2020 |
T2016 |
prep |
with,ligated |
R1384 |
T2021 |
T2020 |
pobj |
BglII,with |
R1385 |
T2022 |
T2021 |
cc |
and,BglII |
R1386 |
T2023 |
T2021 |
conj |
ApaI,BglII |
R1387 |
T2024 |
T2016 |
cc |
and,ligated |
R1388 |
T2025 |
T2016 |
conj |
cloned,ligated |
R1389 |
T2026 |
T2025 |
advmod |
back,cloned |
R1390 |
T2027 |
T2025 |
prep |
into,cloned |
R1391 |
T2028 |
T2029 |
det |
the,vector |
R1392 |
T2029 |
T2027 |
pobj |
vector,into |
R1393 |
T2030 |
T2029 |
amod |
original,vector |
R1394 |
T2031 |
T2032 |
compound |
mo,KS |
R1395 |
T2032 |
T2029 |
compound |
KS,vector |
R1396 |
T2033 |
T2032 |
punct |
/,KS |
R1397 |
T2034 |
T2032 |
compound |
huAPP695,KS |
R1398 |
T2035 |
T2032 |
punct |
-,KS |
R1399 |
T2036 |
T2032 |
compound |
BS,KS |
R1400 |
T2037 |
T2032 |
punct |
-,KS |
R1401 |
T2038 |
T2016 |
punct |
.,ligated |
R1402 |
T2040 |
T2041 |
advmod |
Finally,subcloned |
R1403 |
T2042 |
T2041 |
punct |
", ",subcloned |
R1404 |
T2043 |
T2044 |
det |
the,ind |
R1405 |
T2044 |
T2041 |
nsubjpass |
ind,subcloned |
R1406 |
T2045 |
T2044 |
amod |
new,ind |
R1407 |
T2046 |
T2044 |
compound |
APP695swe,ind |
R1408 |
T2047 |
T2044 |
punct |
/,ind |
R1409 |
T2048 |
T2041 |
auxpass |
was,subcloned |
R1410 |
T2049 |
T2041 |
prep |
into,subcloned |
R1411 |
T2050 |
T2051 |
det |
the,site |
R1412 |
T2051 |
T2049 |
pobj |
site,into |
R1413 |
T2052 |
T2051 |
compound |
XhoI,site |
R1414 |
T2053 |
T2051 |
prep |
of,site |
R1415 |
T2054 |
T2055 |
det |
the,vector |
R1416 |
T2055 |
T2053 |
pobj |
vector,of |
R1417 |
T2056 |
T2057 |
compound |
moPrP,tetP |
R1418 |
T2057 |
T2055 |
compound |
tetP,vector |
R1419 |
T2058 |
T2057 |
punct |
-,tetP |
R1420 |
T2059 |
T2041 |
prep |
from,subcloned |
R1421 |
T2060 |
T2059 |
pcomp |
above,from |
R1422 |
T2061 |
T2062 |
aux |
to,complete |
R1423 |
T2062 |
T2041 |
advcl |
complete,subcloned |
R1424 |
T2063 |
T2064 |
det |
the,construct |
R1425 |
T2064 |
T2062 |
dobj |
construct,complete |
R1426 |
T2065 |
T2041 |
punct |
.,subcloned |
R915 |
T1535 |
T1536 |
compound |
Transgene,Construction |
R916 |
T1538 |
T1539 |
nsubj |
We,created |
R917 |
T1540 |
T1541 |
det |
a,vector |
R918 |
T1541 |
T1539 |
dobj |
vector,created |
R919 |
T1542 |
T1543 |
npadvmod |
tetracycline,responsive |
R920 |
T1543 |
T1541 |
amod |
responsive,vector |
R921 |
T1544 |
T1543 |
punct |
-,responsive |
R922 |
T1545 |
T1541 |
amod |
chimeric,vector |
R923 |
T1546 |
T1541 |
nmod |
mouse,vector |
R924 |
T1547 |
T1546 |
punct |
/,mouse |
R925 |
T1548 |
T1546 |
amod |
human,mouse |
R926 |
T1549 |
T1550 |
nmod |
APP695Swedish,Indiana |
R927 |
T1550 |
T1541 |
nmod |
Indiana,vector |
R928 |
T1551 |
T1550 |
punct |
/,Indiana |
R929 |
T1552 |
T1550 |
punct |
(,Indiana |
R930 |
T1553 |
T1554 |
compound |
swe,ind |
R931 |
T1554 |
T1550 |
appos |
ind,Indiana |
R932 |
T1555 |
T1554 |
punct |
/,ind |
R933 |
T1556 |
T1541 |
punct |
),vector |
R934 |
T1557 |
T1539 |
prep |
by,created |
R935 |
T1558 |
T1557 |
pcomp |
replacing,by |
R936 |
T1559 |
T1560 |
det |
the,region |
R937 |
T1560 |
T1558 |
dobj |
region,replacing |
R938 |
T1561 |
T1560 |
compound |
promoter,region |
R939 |
T1562 |
T1560 |
prep |
of,region |
R940 |
T1563 |
T1564 |
det |
the,vector |
R941 |
T1564 |
T1562 |
pobj |
vector,of |
R942 |
T1565 |
T1564 |
compound |
moPrP.XhoI,vector |
R943 |
T1566 |
T1567 |
punct |
(,known |
R944 |
T1567 |
T1558 |
parataxis |
known,replacing |
R945 |
T1568 |
T1567 |
advmod |
also,known |
R946 |
T1569 |
T1567 |
prep |
as,known |
R947 |
T1570 |
T1571 |
nmod |
pPrPpE1,3sal |
R948 |
T1571 |
T1569 |
pobj |
3sal,as |
R949 |
T1572 |
T1571 |
punct |
/,3sal |
R950 |
T1573 |
T1571 |
nmod |
E2,3sal |
R951 |
T1574 |
T1571 |
punct |
",",3sal |
R952 |
T1575 |
T1576 |
punct |
[,15 |
R953 |
T1576 |
T1567 |
parataxis |
15,known |
R954 |
T1577 |
T1576 |
punct |
],15 |
R955 |
T1578 |
T1567 |
punct |
),known |
R956 |
T1579 |
T1558 |
prep |
with,replacing |
R957 |
T1580 |
T1581 |
det |
the,promoter |
R958 |
T1581 |
T1579 |
pobj |
promoter,with |
R959 |
T1582 |
T1583 |
npadvmod |
tetracycline,responsive |
R960 |
T1583 |
T1581 |
amod |
responsive,promoter |
R961 |
T1584 |
T1583 |
punct |
-,responsive |
R962 |
T1585 |
T1581 |
prep |
of,promoter |
R963 |
T1586 |
T1585 |
pobj |
pTetSplice,of |
R964 |
T1587 |
T1588 |
punct |
(,Technologies |
R965 |
T1588 |
T1586 |
parataxis |
Technologies,pTetSplice |
R966 |
T1589 |
T1588 |
compound |
Life,Technologies |
R967 |
T1590 |
T1588 |
punct |
", ",Technologies |
R968 |
T1591 |
T1588 |
npadvmod |
Rockville,Technologies |
R969 |
T1592 |
T1588 |
punct |
", ",Technologies |
R970 |
T1593 |
T1588 |
npadvmod |
Maryland,Technologies |
R971 |
T1594 |
T1588 |
punct |
", ",Technologies |
R972 |
T1595 |
T1596 |
compound |
United,States |
R973 |
T1596 |
T1588 |
npadvmod |
States,Technologies |
R974 |
T1597 |
T1588 |
punct |
),Technologies |
R975 |
T1598 |
T1558 |
punct |
", ",replacing |
R976 |
T1599 |
T1558 |
cc |
and,replacing |
R977 |
T1600 |
T1601 |
advmod |
then,ligating |
R978 |
T1601 |
T1558 |
conj |
ligating,replacing |
R979 |
T1602 |
T1603 |
compound |
mouse,APP |
R980 |
T1603 |
T1601 |
dobj |
APP,ligating |
R981 |
T1604 |
T1601 |
prep |
with,ligating |
R982 |
T1605 |
T1606 |
det |
a,domain |
R983 |
T1606 |
T1609 |
nmod |
domain,cDNA |
R984 |
T1607 |
T1606 |
amod |
humanized,domain |
R985 |
T1608 |
T1606 |
nmod |
Aβ,domain |
R986 |
T1609 |
T1604 |
pobj |
cDNA,with |
R987 |
T1610 |
T1606 |
punct |
(,domain |
R988 |
T1611 |
T1612 |
compound |
mo,huAPP695 |
R989 |
T1612 |
T1606 |
appos |
huAPP695,domain |
R990 |
T1613 |
T1612 |
punct |
/,huAPP695 |
R991 |
T1614 |
T1609 |
punct |
),cDNA |
R992 |
T1615 |
T1601 |
prep |
into,ligating |
R993 |
T1616 |
T1617 |
det |
the,vector |
R994 |
T1617 |
T1615 |
pobj |
vector,into |
R995 |
T1618 |
T1617 |
amod |
new,vector |
R996 |
T1619 |
T1539 |
punct |
.,created |
R997 |
T1621 |
T1622 |
nsubj |
We,began |
R998 |
T1623 |
T1622 |
prep |
by,began |
R999 |
T1624 |
T1623 |
pcomp |
cloning,by |