craft-sa-dev Home  

PMC:1253828 / 20935-21564 JSONTXT 4 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T6174 0-5 CD denotes Three
T6176 6-9 NN denotes MRE
T6177 10-14 NN denotes core
T6178 15-24 NN denotes consensus
T6175 25-34 NNS denotes sequences
T6180 35-39 VBD denotes were
T6179 40-45 VBN denotes found
T6181 46-48 IN denotes in
T6182 49-52 DT denotes the
T6183 53-59 NN denotes region
T6184 60-68 RB denotes upstream
T6185 69-71 IN denotes of
T6186 72-75 DT denotes the
T6188 76-81 NN denotes mouse
T6189 82-87 NN denotes Sepw1
T6190 88-101 NN denotes transcription
T6187 102-107 NN denotes start
T6191 108-109 -LRB- denotes (
T6193 109-115 NN denotes Figure
T6192 116-118 NN denotes 2c
T6194 118-119 -RRB- denotes )
T6195 119-120 . denotes .
T6196 120-293 sentence denotes Two of them in opposite orientation overlap almost completely proximal to the transcription start (MRE1, −40 bp), the third one is located further upstream (MRE2, −527 bp).
T6197 121-124 CD denotes Two
T6199 125-127 IN denotes of
T6200 128-132 PRP denotes them
T6201 133-135 IN denotes in
T6202 136-144 JJ denotes opposite
T6203 145-156 NN denotes orientation
T6198 157-164 VBP denotes overlap
T6205 165-171 RB denotes almost
T6206 172-182 RB denotes completely
T6207 183-191 RB denotes proximal
T6208 192-194 IN denotes to
T6209 195-198 DT denotes the
T6211 199-212 NN denotes transcription
T6210 213-218 NN denotes start
T6212 219-220 -LRB- denotes (
T6214 220-224 NN denotes MRE1
T6215 224-226 , denotes ,
T6216 226-227 SYM denotes −
T6217 227-229 CD denotes 40
T6213 230-232 NN denotes bp
T6218 232-233 -RRB- denotes )
T6219 233-235 , denotes ,
T6220 235-238 DT denotes the
T6222 239-244 JJ denotes third
T6221 245-248 NN denotes one
T6223 249-251 VBZ denotes is
T6204 252-259 VBN denotes located
T6224 260-267 RB denotes further
T6225 268-276 RB denotes upstream
T6226 277-278 -LRB- denotes (
T6228 278-282 NN denotes MRE2
T6229 282-284 , denotes ,
T6230 284-285 SYM denotes −
T6231 285-288 CD denotes 527
T6227 289-291 NN denotes bp
T6232 291-292 -RRB- denotes )
T6233 292-293 . denotes .
T6234 293-454 sentence denotes Specific binding of MTF-1 to Sepw1 MRE1 but not MRE2 oligonucleotide was observed in EMSA with liver protein extract from an Mtf1loxP control mouse (Figure 2d).
T6235 294-302 JJ denotes Specific
T6236 303-310 NN denotes binding
T6238 311-313 IN denotes of
T6239 314-317 NN denotes MTF
T6240 317-318 HYPH denotes -
T6241 318-319 CD denotes 1
T6242 320-322 IN denotes to
T6243 323-328 NN denotes Sepw1
T6245 329-333 NN denotes MRE1
T6246 334-337 CC denotes but
T6247 338-341 RB denotes not
T6248 342-346 NN denotes MRE2
T6244 347-362 NN denotes oligonucleotide
T6249 363-366 VBD denotes was
T6237 367-375 VBN denotes observed
T6250 376-378 IN denotes in
T6251 379-383 NN denotes EMSA
T6252 384-388 IN denotes with
T6253 389-394 NN denotes liver
T6254 395-402 NN denotes protein
T6255 403-410 NN denotes extract
T6256 411-415 IN denotes from
T6257 416-418 DT denotes an
T6259 419-427 NN denotes Mtf1loxP
T6260 428-435 NN denotes control
T6258 436-441 NN denotes mouse
T6261 442-443 -LRB- denotes (
T6263 443-449 NN denotes Figure
T6262 450-452 NN denotes 2d
T6264 452-453 -RRB- denotes )
T6265 453-454 . denotes .
T6266 454-629 sentence denotes As a control, no binding to MRE1 was detected with extract from a pI–pC-induced Mtf1Mx-cre mouse, confirming that the bandshift was indeed dependent on the presence of MTF-1.
T6267 455-457 IN denotes As
T6269 458-459 DT denotes a
T6270 460-467 NN denotes control
T6271 467-469 , denotes ,
T6272 469-471 DT denotes no
T6273 472-479 NN denotes binding
T6274 480-482 IN denotes to
T6275 483-487 NN denotes MRE1
T6276 488-491 VBD denotes was
T6268 492-500 VBN denotes detected
T6277 501-505 IN denotes with
T6278 506-513 NN denotes extract
T6279 514-518 IN denotes from
T6280 519-520 DT denotes a
T6282 521-523 NN denotes pI
T6284 523-524 HYPH denotes –
T6283 524-526 NN denotes pC
T6286 526-527 HYPH denotes -
T6285 527-534 VBN denotes induced
T6287 535-541 NN denotes Mtf1Mx
T6289 541-542 HYPH denotes -
T6288 542-545 NN denotes cre
T6281 546-551 NN denotes mouse
T6290 551-553 , denotes ,
T6291 553-563 VBG denotes confirming
T6292 564-568 IN denotes that
T6294 569-572 DT denotes the
T6295 573-582 NN denotes bandshift
T6293 583-586 VBD denotes was
T6296 587-593 RB denotes indeed
T6297 594-603 JJ denotes dependent
T6298 604-606 IN denotes on
T6299 607-610 DT denotes the
T6300 611-619 NN denotes presence
T6301 620-622 IN denotes of
T6302 623-626 NN denotes MTF
T6303 626-627 HYPH denotes -
T6304 627-628 CD denotes 1
T6305 628-629 . denotes .
R4078 T6174 T6175 nummod Three,sequences
R4079 T6175 T6179 nsubjpass sequences,found
R4080 T6176 T6175 compound MRE,sequences
R4081 T6177 T6178 compound core,consensus
R4082 T6178 T6175 compound consensus,sequences
R4083 T6180 T6179 auxpass were,found
R4084 T6181 T6179 prep in,found
R4085 T6182 T6183 det the,region
R4086 T6183 T6181 pobj region,in
R4087 T6184 T6183 advmod upstream,region
R4088 T6185 T6184 prep of,upstream
R4089 T6186 T6187 det the,start
R4090 T6187 T6185 pobj start,of
R4091 T6188 T6189 compound mouse,Sepw1
R4092 T6189 T6187 compound Sepw1,start
R4093 T6190 T6187 compound transcription,start
R4094 T6191 T6192 punct (,2c
R4095 T6192 T6179 parataxis 2c,found
R4096 T6193 T6192 compound Figure,2c
R4097 T6194 T6192 punct ),2c
R4098 T6195 T6179 punct .,found
R4099 T6197 T6198 nsubj Two,overlap
R4100 T6198 T6204 ccomp overlap,located
R4101 T6199 T6197 prep of,Two
R4102 T6200 T6199 pobj them,of
R4103 T6201 T6197 prep in,Two
R4104 T6202 T6203 amod opposite,orientation
R4105 T6203 T6201 pobj orientation,in
R4106 T6205 T6206 advmod almost,completely
R4107 T6206 T6207 advmod completely,proximal
R4108 T6207 T6198 advmod proximal,overlap
R4109 T6208 T6207 prep to,proximal
R4110 T6209 T6210 det the,start
R4111 T6210 T6208 pobj start,to
R4112 T6211 T6210 compound transcription,start
R4113 T6212 T6213 punct (,bp
R4114 T6213 T6198 parataxis bp,overlap
R4115 T6214 T6213 dep MRE1,bp
R4116 T6215 T6213 punct ", ",bp
R4117 T6216 T6217 punct −,40
R4118 T6217 T6213 nummod 40,bp
R4119 T6218 T6213 punct ),bp
R4120 T6219 T6204 punct ", ",located
R4121 T6220 T6221 det the,one
R4122 T6221 T6204 nsubjpass one,located
R4123 T6222 T6221 amod third,one
R4124 T6223 T6204 auxpass is,located
R4125 T6224 T6225 advmod further,upstream
R4126 T6225 T6204 advmod upstream,located
R4127 T6226 T6227 punct (,bp
R4128 T6227 T6204 parataxis bp,located
R4129 T6228 T6227 dep MRE2,bp
R4130 T6229 T6227 punct ", ",bp
R4131 T6230 T6231 punct −,527
R4132 T6231 T6227 nummod 527,bp
R4133 T6232 T6227 punct ),bp
R4134 T6233 T6204 punct .,located
R4135 T6235 T6236 amod Specific,binding
R4136 T6236 T6237 nsubjpass binding,observed
R4137 T6238 T6236 prep of,binding
R4138 T6239 T6238 pobj MTF,of
R4139 T6240 T6239 punct -,MTF
R4140 T6241 T6239 nummod 1,MTF
R4141 T6242 T6236 prep to,binding
R4142 T6243 T6244 nmod Sepw1,oligonucleotide
R4143 T6244 T6242 pobj oligonucleotide,to
R4144 T6245 T6244 nmod MRE1,oligonucleotide
R4145 T6246 T6245 cc but,MRE1
R4146 T6247 T6246 neg not,but
R4147 T6248 T6245 conj MRE2,MRE1
R4148 T6249 T6237 auxpass was,observed
R4149 T6250 T6237 prep in,observed
R4150 T6251 T6250 pobj EMSA,in
R4151 T6252 T6251 prep with,EMSA
R4152 T6253 T6254 compound liver,protein
R4153 T6254 T6255 compound protein,extract
R4154 T6255 T6252 pobj extract,with
R4155 T6256 T6255 prep from,extract
R4156 T6257 T6258 det an,mouse
R4157 T6258 T6256 pobj mouse,from
R4158 T6259 T6258 compound Mtf1loxP,mouse
R4159 T6260 T6258 compound control,mouse
R4160 T6261 T6262 punct (,2d
R4161 T6262 T6237 parataxis 2d,observed
R4162 T6263 T6262 compound Figure,2d
R4163 T6264 T6262 punct ),2d
R4164 T6265 T6237 punct .,observed
R4165 T6267 T6268 prep As,detected
R4166 T6269 T6270 det a,control
R4167 T6270 T6267 pobj control,As
R4168 T6271 T6268 punct ", ",detected
R4169 T6272 T6273 det no,binding
R4170 T6273 T6268 nsubjpass binding,detected
R4171 T6274 T6273 prep to,binding
R4172 T6275 T6274 pobj MRE1,to
R4173 T6276 T6268 auxpass was,detected
R4174 T6277 T6268 prep with,detected
R4175 T6278 T6277 pobj extract,with
R4176 T6279 T6278 prep from,extract
R4177 T6280 T6281 det a,mouse
R4178 T6281 T6279 pobj mouse,from
R4179 T6282 T6283 compound pI,pC
R4180 T6283 T6285 npadvmod pC,induced
R4181 T6284 T6283 punct –,pC
R4182 T6285 T6281 amod induced,mouse
R4183 T6286 T6285 punct -,induced
R4184 T6287 T6288 compound Mtf1Mx,cre
R4185 T6288 T6281 compound cre,mouse
R4186 T6289 T6288 punct -,cre
R4187 T6290 T6268 punct ", ",detected
R4188 T6291 T6268 advcl confirming,detected
R4189 T6292 T6293 mark that,was
R4190 T6293 T6291 ccomp was,confirming
R4191 T6294 T6295 det the,bandshift
R4192 T6295 T6293 nsubj bandshift,was
R4193 T6296 T6293 advmod indeed,was
R4194 T6297 T6293 acomp dependent,was
R4195 T6298 T6297 prep on,dependent
R4196 T6299 T6300 det the,presence
R4197 T6300 T6298 pobj presence,on
R4198 T6301 T6300 prep of,presence
R4199 T6302 T6301 pobj MTF,of
R4200 T6303 T6302 punct -,MTF
R4201 T6304 T6302 nummod 1,MTF
R4202 T6305 T6268 punct .,detected