| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T8299 |
0-16 |
NN |
denotes |
Characterisation |
| T8300 |
17-19 |
IN |
denotes |
of |
| T8301 |
20-23 |
DT |
denotes |
the |
| T8303 |
24-28 |
NN |
denotes |
PAX6 |
| T8304 |
29-30 |
NN |
denotes |
C |
| T8306 |
30-31 |
HYPH |
denotes |
- |
| T8305 |
31-39 |
JJ |
denotes |
terminal |
| T8302 |
40-47 |
NN |
denotes |
peptide |
| T8307 |
47-48 |
. |
denotes |
. |
| T8308 |
48-131 |
sentence |
denotes |
(a) CLUSTAL alignment of the terminal 42 amino acids of PAX6 from diverse species. |
| T8309 |
49-50 |
-LRB- |
denotes |
( |
| T8310 |
50-51 |
LS |
denotes |
a |
| T8312 |
51-52 |
-RRB- |
denotes |
) |
| T8313 |
53-60 |
NNP |
denotes |
CLUSTAL |
| T8311 |
61-70 |
NN |
denotes |
alignment |
| T8314 |
71-73 |
IN |
denotes |
of |
| T8315 |
74-77 |
DT |
denotes |
the |
| T8317 |
78-86 |
JJ |
denotes |
terminal |
| T8318 |
87-89 |
CD |
denotes |
42 |
| T8319 |
90-95 |
NN |
denotes |
amino |
| T8316 |
96-101 |
NNS |
denotes |
acids |
| T8320 |
102-104 |
IN |
denotes |
of |
| T8321 |
105-109 |
NN |
denotes |
PAX6 |
| T8322 |
110-114 |
IN |
denotes |
from |
| T8323 |
115-122 |
JJ |
denotes |
diverse |
| T8324 |
123-130 |
NNS |
denotes |
species |
| T8325 |
130-131 |
. |
denotes |
. |
| T8326 |
131-260 |
sentence |
denotes |
(*) indicates invariant residues, (:) indicates highly similar substitutions and (.) indicates moderately similar substitutions. |
| T8327 |
132-133 |
-LRB- |
denotes |
( |
| T8329 |
133-134 |
SYM |
denotes |
* |
| T8330 |
134-135 |
-RRB- |
denotes |
) |
| T8328 |
136-145 |
VBZ |
denotes |
indicates |
| T8332 |
146-155 |
JJ |
denotes |
invariant |
| T8333 |
156-164 |
NNS |
denotes |
residues |
| T8334 |
164-166 |
, |
denotes |
, |
| T8335 |
166-167 |
-LRB- |
denotes |
( |
| T8336 |
167-168 |
SYM |
denotes |
: |
| T8337 |
168-169 |
-RRB- |
denotes |
) |
| T8331 |
170-179 |
VBZ |
denotes |
indicates |
| T8338 |
180-186 |
RB |
denotes |
highly |
| T8339 |
187-194 |
JJ |
denotes |
similar |
| T8340 |
195-208 |
NNS |
denotes |
substitutions |
| T8341 |
209-212 |
CC |
denotes |
and |
| T8342 |
213-214 |
-LRB- |
denotes |
( |
| T8344 |
214-215 |
SYM |
denotes |
. |
| T8345 |
215-216 |
-RRB- |
denotes |
) |
| T8343 |
217-226 |
VBZ |
denotes |
indicates |
| T8346 |
227-237 |
RB |
denotes |
moderately |
| T8347 |
238-245 |
JJ |
denotes |
similar |
| T8348 |
246-259 |
NNS |
denotes |
substitutions |
| T8349 |
259-260 |
. |
denotes |
. |
| T8350 |
260-400 |
sentence |
denotes |
(b) Secondary structure analysis of the highly conserved terminal 28 amino acids predicts a single beta sheet (arrow) in the SVPVQ peptide. |
| T8351 |
261-262 |
-LRB- |
denotes |
( |
| T8352 |
262-263 |
LS |
denotes |
b |
| T8354 |
263-264 |
-RRB- |
denotes |
) |
| T8355 |
265-274 |
JJ |
denotes |
Secondary |
| T8357 |
275-284 |
NN |
denotes |
structure |
| T8356 |
285-293 |
NN |
denotes |
analysis |
| T8358 |
294-296 |
IN |
denotes |
of |
| T8359 |
297-300 |
DT |
denotes |
the |
| T8361 |
301-307 |
RB |
denotes |
highly |
| T8362 |
308-317 |
JJ |
denotes |
conserved |
| T8363 |
318-326 |
JJ |
denotes |
terminal |
| T8364 |
327-329 |
CD |
denotes |
28 |
| T8365 |
330-335 |
NN |
denotes |
amino |
| T8360 |
336-341 |
NNS |
denotes |
acids |
| T8353 |
342-350 |
VBZ |
denotes |
predicts |
| T8366 |
351-352 |
DT |
denotes |
a |
| T8368 |
353-359 |
JJ |
denotes |
single |
| T8369 |
360-364 |
NN |
denotes |
beta |
| T8367 |
365-370 |
NN |
denotes |
sheet |
| T8370 |
371-372 |
-LRB- |
denotes |
( |
| T8371 |
372-377 |
NN |
denotes |
arrow |
| T8372 |
377-378 |
-RRB- |
denotes |
) |
| T8373 |
379-381 |
IN |
denotes |
in |
| T8374 |
382-385 |
DT |
denotes |
the |
| T8376 |
386-391 |
NN |
denotes |
SVPVQ |
| T8375 |
392-399 |
NN |
denotes |
peptide |
| T8377 |
399-400 |
. |
denotes |
. |
| T8378 |
400-492 |
sentence |
denotes |
(c) When 4 residues are added in the N-terminal direction, 2 beta sheets are now predicted. |
| T8379 |
401-402 |
-LRB- |
denotes |
( |
| T8380 |
402-403 |
LS |
denotes |
c |
| T8382 |
403-404 |
-RRB- |
denotes |
) |
| T8383 |
405-409 |
WRB |
denotes |
When |
| T8385 |
410-411 |
CD |
denotes |
4 |
| T8386 |
412-420 |
NNS |
denotes |
residues |
| T8387 |
421-424 |
VBP |
denotes |
are |
| T8384 |
425-430 |
VBN |
denotes |
added |
| T8388 |
431-433 |
IN |
denotes |
in |
| T8389 |
434-437 |
DT |
denotes |
the |
| T8391 |
438-439 |
NN |
denotes |
N |
| T8393 |
439-440 |
HYPH |
denotes |
- |
| T8392 |
440-448 |
JJ |
denotes |
terminal |
| T8390 |
449-458 |
NN |
denotes |
direction |
| T8394 |
458-460 |
, |
denotes |
, |
| T8395 |
460-461 |
CD |
denotes |
2 |
| T8397 |
462-466 |
NN |
denotes |
beta |
| T8396 |
467-473 |
NNS |
denotes |
sheets |
| T8398 |
474-477 |
VBP |
denotes |
are |
| T8399 |
478-481 |
RB |
denotes |
now |
| T8381 |
482-491 |
VBN |
denotes |
predicted |
| T8400 |
491-492 |
. |
denotes |
. |
| R5301 |
T8300 |
T8299 |
prep |
of,Characterisation |
| R5302 |
T8301 |
T8302 |
det |
the,peptide |
| R5303 |
T8302 |
T8300 |
pobj |
peptide,of |
| R5304 |
T8303 |
T8302 |
nmod |
PAX6,peptide |
| R5305 |
T8304 |
T8305 |
npadvmod |
C,terminal |
| R5306 |
T8305 |
T8302 |
amod |
terminal,peptide |
| R5307 |
T8306 |
T8305 |
punct |
-,terminal |
| R5308 |
T8307 |
T8299 |
punct |
.,Characterisation |
| R5309 |
T8309 |
T8310 |
punct |
(,a |
| R5310 |
T8310 |
T8311 |
meta |
a,alignment |
| R5311 |
T8312 |
T8310 |
punct |
),a |
| R5312 |
T8313 |
T8311 |
compound |
CLUSTAL,alignment |
| R5313 |
T8314 |
T8311 |
prep |
of,alignment |
| R5314 |
T8315 |
T8316 |
det |
the,acids |
| R5315 |
T8316 |
T8314 |
pobj |
acids,of |
| R5316 |
T8317 |
T8316 |
amod |
terminal,acids |
| R5317 |
T8318 |
T8316 |
nummod |
42,acids |
| R5318 |
T8319 |
T8316 |
compound |
amino,acids |
| R5319 |
T8320 |
T8316 |
prep |
of,acids |
| R5320 |
T8321 |
T8320 |
pobj |
PAX6,of |
| R5321 |
T8322 |
T8316 |
prep |
from,acids |
| R5322 |
T8323 |
T8324 |
amod |
diverse,species |
| R5323 |
T8324 |
T8322 |
pobj |
species,from |
| R5324 |
T8325 |
T8311 |
punct |
.,alignment |
| R5325 |
T8327 |
T8328 |
punct |
(,indicates |
| R5326 |
T8328 |
T8331 |
ccomp |
indicates,indicates |
| R5327 |
T8329 |
T8328 |
nsubj |
*,indicates |
| R5328 |
T8330 |
T8328 |
punct |
),indicates |
| R5329 |
T8332 |
T8333 |
amod |
invariant,residues |
| R5330 |
T8333 |
T8328 |
dobj |
residues,indicates |
| R5331 |
T8334 |
T8328 |
punct |
", ",indicates |
| R5332 |
T8335 |
T8328 |
punct |
(,indicates |
| R5333 |
T8336 |
T8331 |
nsubj |
:,indicates |
| R5334 |
T8337 |
T8331 |
punct |
),indicates |
| R5335 |
T8338 |
T8339 |
advmod |
highly,similar |
| R5336 |
T8339 |
T8340 |
amod |
similar,substitutions |
| R5337 |
T8340 |
T8331 |
dobj |
substitutions,indicates |
| R5338 |
T8341 |
T8331 |
cc |
and,indicates |
| R5339 |
T8342 |
T8343 |
punct |
(,indicates |
| R5340 |
T8343 |
T8331 |
conj |
indicates,indicates |
| R5341 |
T8344 |
T8343 |
nsubj |
.,indicates |
| R5342 |
T8345 |
T8343 |
punct |
),indicates |
| R5343 |
T8346 |
T8347 |
advmod |
moderately,similar |
| R5344 |
T8347 |
T8348 |
amod |
similar,substitutions |
| R5345 |
T8348 |
T8343 |
dobj |
substitutions,indicates |
| R5346 |
T8349 |
T8343 |
punct |
.,indicates |
| R5347 |
T8351 |
T8352 |
punct |
(,b |
| R5348 |
T8352 |
T8353 |
meta |
b,predicts |
| R5349 |
T8354 |
T8352 |
punct |
),b |
| R5350 |
T8355 |
T8356 |
amod |
Secondary,analysis |
| R5351 |
T8356 |
T8353 |
nsubj |
analysis,predicts |
| R5352 |
T8357 |
T8356 |
compound |
structure,analysis |
| R5353 |
T8358 |
T8356 |
prep |
of,analysis |
| R5354 |
T8359 |
T8360 |
det |
the,acids |
| R5355 |
T8360 |
T8358 |
pobj |
acids,of |
| R5356 |
T8361 |
T8362 |
advmod |
highly,conserved |
| R5357 |
T8362 |
T8360 |
amod |
conserved,acids |
| R5358 |
T8363 |
T8360 |
amod |
terminal,acids |
| R5359 |
T8364 |
T8360 |
nummod |
28,acids |
| R5360 |
T8365 |
T8360 |
compound |
amino,acids |
| R5361 |
T8366 |
T8367 |
det |
a,sheet |
| R5362 |
T8367 |
T8353 |
dobj |
sheet,predicts |
| R5363 |
T8368 |
T8367 |
amod |
single,sheet |
| R5364 |
T8369 |
T8367 |
compound |
beta,sheet |
| R5365 |
T8370 |
T8371 |
punct |
(,arrow |
| R5366 |
T8371 |
T8367 |
parataxis |
arrow,sheet |
| R5367 |
T8372 |
T8371 |
punct |
),arrow |
| R5368 |
T8373 |
T8353 |
prep |
in,predicts |
| R5369 |
T8374 |
T8375 |
det |
the,peptide |
| R5370 |
T8375 |
T8373 |
pobj |
peptide,in |
| R5371 |
T8376 |
T8375 |
compound |
SVPVQ,peptide |
| R5372 |
T8377 |
T8353 |
punct |
.,predicts |
| R5373 |
T8379 |
T8380 |
punct |
(,c |
| R5374 |
T8380 |
T8381 |
meta |
c,predicted |
| R5375 |
T8382 |
T8380 |
punct |
),c |
| R5376 |
T8383 |
T8384 |
advmod |
When,added |
| R5377 |
T8384 |
T8381 |
advcl |
added,predicted |
| R5378 |
T8385 |
T8386 |
nummod |
4,residues |
| R5379 |
T8386 |
T8384 |
nsubjpass |
residues,added |
| R5380 |
T8387 |
T8384 |
auxpass |
are,added |
| R5381 |
T8388 |
T8384 |
prep |
in,added |
| R5382 |
T8389 |
T8390 |
det |
the,direction |
| R5383 |
T8390 |
T8388 |
pobj |
direction,in |
| R5384 |
T8391 |
T8392 |
npadvmod |
N,terminal |
| R5385 |
T8392 |
T8390 |
amod |
terminal,direction |
| R5386 |
T8393 |
T8392 |
punct |
-,terminal |
| R5387 |
T8394 |
T8381 |
punct |
", ",predicted |
| R5388 |
T8395 |
T8396 |
nummod |
2,sheets |
| R5389 |
T8396 |
T8381 |
nsubjpass |
sheets,predicted |
| R5390 |
T8397 |
T8396 |
compound |
beta,sheets |
| R5391 |
T8398 |
T8381 |
auxpass |
are,predicted |
| R5392 |
T8399 |
T8381 |
advmod |
now,predicted |
| R5393 |
T8400 |
T8381 |
punct |
.,predicted |
