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PMC:1166548 / 9764-10655 JSONTXT 4 Projects

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Id Subject Object Predicate Lexical cue
T2560 0-891 sentence denotes Figure 2 Effect of genetic background on inflammatory gene expression in CF mouse small intestine. RNA expression levels were determined by quantitative real-time RT-PCR using gene-specific primers. Data are expressed relative to GAPDH mRNA, which does not vary between wild type and CF mice. Data are means ± SEM. (*) CF vs wild type on the B6 background, P < 0.005; (+) CF on the mixed background vs CF on the B6 background, P < 0.05 by ANOVA with a post-hoc Tukey's test. There were no significant differences for any of the 6 genes comparing: wild type B6 mice vs wild type mixed background; or CF mice on the mixed background vs wild type on either background. There were 8–11 samples analyzed per group for each gene. Because of the gender differences in body weight, the gene expression data were analyzed by gender but there was no significant difference between females and males.
T6751 11-17 NN denotes Effect
T6752 18-20 IN denotes of
T6753 21-28 JJ denotes genetic
T6754 29-39 NN denotes background
T6755 40-42 IN denotes on
T6756 43-55 JJ denotes inflammatory
T6758 56-60 NN denotes gene
T6757 61-71 NN denotes expression
T6759 72-74 IN denotes in
T6760 75-77 NN denotes CF
T6761 78-83 NN denotes mouse
T6763 84-89 JJ denotes small
T6762 90-99 NN denotes intestine
T6764 99-100 . denotes .
T6765 100-200 sentence denotes RNA expression levels were determined by quantitative real-time RT-PCR using gene-specific primers.
T6766 101-104 NN denotes RNA
T6768 105-115 NN denotes expression
T6767 116-122 NNS denotes levels
T6770 123-127 VBD denotes were
T6769 128-138 VBN denotes determined
T6771 139-141 IN denotes by
T6772 142-154 JJ denotes quantitative
T6774 155-159 JJ denotes real
T6776 159-160 HYPH denotes -
T6775 160-164 NN denotes time
T6777 165-167 NN denotes RT
T6778 167-168 HYPH denotes -
T6773 168-171 NN denotes PCR
T6779 172-177 VBG denotes using
T6780 178-182 NN denotes gene
T6782 182-183 HYPH denotes -
T6781 183-191 JJ denotes specific
T6783 192-199 NNS denotes primers
T6784 199-200 . denotes .
T6785 200-294 sentence denotes Data are expressed relative to GAPDH mRNA, which does not vary between wild type and CF mice.
T6786 201-205 NNS denotes Data
T6788 206-209 VBP denotes are
T6787 210-219 VBN denotes expressed
T6789 220-228 JJ denotes relative
T6790 229-231 IN denotes to
T6791 232-237 NN denotes GAPDH
T6792 238-242 NN denotes mRNA
T6793 242-244 , denotes ,
T6794 244-249 WDT denotes which
T6796 250-254 VBZ denotes does
T6797 255-258 RB denotes not
T6795 259-263 VB denotes vary
T6798 264-271 IN denotes between
T6799 272-276 JJ denotes wild
T6800 277-281 NN denotes type
T6802 282-285 CC denotes and
T6803 286-288 NN denotes CF
T6801 289-293 NNS denotes mice
T6804 293-294 . denotes .
T6805 294-316 sentence denotes Data are means ± SEM.
T6806 295-299 NNS denotes Data
T6807 300-303 VBP denotes are
T6808 304-309 NNS denotes means
T6810 310-311 SYM denotes ±
T6809 312-315 NN denotes SEM
T6811 315-316 . denotes .
T6812 316-476 sentence denotes (*) CF vs wild type on the B6 background, P < 0.005; (+) CF on the mixed background vs CF on the B6 background, P < 0.05 by ANOVA with a post-hoc Tukey's test.
T6813 317-318 -LRB- denotes (
T6814 318-319 LS denotes *
T6816 319-320 -RRB- denotes )
T6817 321-323 NN denotes CF
T6818 324-326 CC denotes vs
T6819 327-331 JJ denotes wild
T6820 332-336 NN denotes type
T6821 337-339 IN denotes on
T6822 340-343 DT denotes the
T6824 344-346 NN denotes B6
T6823 347-357 NN denotes background
T6825 357-359 , denotes ,
T6826 359-360 NN denotes P
T6827 361-362 SYM denotes <
T6815 363-368 CD denotes 0.005
T6829 368-369 : denotes ;
T6830 370-371 -LRB- denotes (
T6831 371-372 LS denotes +
T6832 372-373 -RRB- denotes )
T6828 374-376 NN denotes CF
T6833 377-379 IN denotes on
T6834 380-383 DT denotes the
T6836 384-389 JJ denotes mixed
T6835 390-400 NN denotes background
T6837 401-403 CC denotes vs
T6838 404-406 NN denotes CF
T6839 407-409 IN denotes on
T6840 410-413 DT denotes the
T6842 414-416 NN denotes B6
T6841 417-427 NN denotes background
T6843 427-429 , denotes ,
T6844 429-430 NN denotes P
T6846 431-432 SYM denotes <
T6845 433-437 CD denotes 0.05
T6847 438-440 IN denotes by
T6848 441-446 NN denotes ANOVA
T6849 447-451 IN denotes with
T6850 452-453 DT denotes a
T6852 454-462 JJ denotes post-hoc
T6853 463-468 NNP denotes Tukey
T6854 468-470 POS denotes 's
T6851 471-475 NN denotes test
T6855 475-476 . denotes .
T6856 476-667 sentence denotes There were no significant differences for any of the 6 genes comparing: wild type B6 mice vs wild type mixed background; or CF mice on the mixed background vs wild type on either background.
T6857 477-482 EX denotes There
T6858 483-487 VBD denotes were
T6859 488-490 DT denotes no
T6861 491-502 JJ denotes significant
T6860 503-514 NNS denotes differences
T6862 515-518 IN denotes for
T6863 519-522 DT denotes any
T6864 523-525 IN denotes of
T6865 526-529 DT denotes the
T6867 530-531 CD denotes 6
T6866 532-537 NNS denotes genes
T6868 538-547 VBG denotes comparing
T6869 547-549 : denotes :
T6870 549-553 JJ denotes wild
T6871 554-558 NN denotes type
T6873 559-561 NN denotes B6
T6872 562-566 NNS denotes mice
T6874 567-569 CC denotes vs
T6875 570-574 JJ denotes wild
T6876 575-579 NN denotes type
T6878 580-585 JJ denotes mixed
T6877 586-596 NN denotes background
T6879 596-597 : denotes ;
T6880 598-600 CC denotes or
T6881 601-603 NN denotes CF
T6882 604-608 NNS denotes mice
T6883 609-611 IN denotes on
T6884 612-615 DT denotes the
T6886 616-621 JJ denotes mixed
T6885 622-632 NN denotes background
T6887 633-635 CC denotes vs
T6888 636-640 JJ denotes wild
T6889 641-645 NN denotes type
T6890 646-648 IN denotes on
T6891 649-655 DT denotes either
T6892 656-666 NN denotes background
T6893 666-667 . denotes .
T6894 667-725 sentence denotes There were 8–11 samples analyzed per group for each gene.
T6895 668-673 EX denotes There
T6896 674-678 VBD denotes were
T6897 679-680 CD denotes 8
T6899 680-681 SYM denotes –
T6898 681-683 CD denotes 11
T6900 684-691 NNS denotes samples
T6901 692-700 VBN denotes analyzed
T6902 701-704 IN denotes per
T6903 705-710 NN denotes group
T6904 711-714 IN denotes for
T6905 715-719 DT denotes each
T6906 720-724 NN denotes gene
T6907 724-725 . denotes .
T2561 726-733 IN denotes Because
T2563 734-736 IN denotes of
T2564 737-740 DT denotes the
T2566 741-747 NN denotes gender
T2565 748-759 NNS denotes differences
T2567 760-762 IN denotes in
T2568 763-767 NN denotes body
T2569 768-774 NN denotes weight
T2570 774-776 , denotes ,
T2571 776-779 DT denotes the
T2573 780-784 NN denotes gene
T2574 785-795 NN denotes expression
T2572 796-800 NNS denotes data
T2575 801-805 VBD denotes were
T2562 806-814 VBN denotes analyzed
T2576 815-817 IN denotes by
T2577 818-824 NN denotes gender
T2578 825-828 CC denotes but
T2579 829-834 EX denotes there
T2580 835-838 VBD denotes was
T2581 839-841 DT denotes no
T2583 842-853 JJ denotes significant
T2582 854-864 NN denotes difference
T2584 865-872 IN denotes between
T2585 873-880 NNS denotes females
T2586 881-884 CC denotes and
T2587 885-890 NNS denotes males
T2588 890-891 . denotes .
R1697 T2561 T2562 prep Because,analyzed
R1698 T2563 T2561 pcomp of,Because
R1699 T2564 T2565 det the,differences
R1700 T2565 T2561 pobj differences,Because
R1701 T2566 T2565 compound gender,differences
R1702 T2567 T2565 prep in,differences
R1703 T2568 T2569 compound body,weight
R1704 T2569 T2567 pobj weight,in
R1705 T2570 T2562 punct ", ",analyzed
R1706 T2571 T2572 det the,data
R1707 T2572 T2562 nsubjpass data,analyzed
R1708 T2573 T2574 compound gene,expression
R1709 T2574 T2572 compound expression,data
R1710 T2575 T2562 auxpass were,analyzed
R1711 T2576 T2562 prep by,analyzed
R1712 T2577 T2576 pobj gender,by
R1713 T2578 T2562 cc but,analyzed
R1714 T2579 T2580 expl there,was
R1715 T2580 T2562 conj was,analyzed
R1716 T2581 T2582 det no,difference
R1717 T2582 T2580 attr difference,was
R1718 T2583 T2582 amod significant,difference
R1719 T2584 T2582 prep between,difference
R1720 T2585 T2584 pobj females,between
R1721 T2586 T2585 cc and,females
R1722 T2587 T2585 conj males,females
R1723 T2588 T2580 punct .,was
R4516 T6752 T6751 prep of,Effect
R4517 T6753 T6754 amod genetic,background
R4518 T6754 T6752 pobj background,of
R4519 T6755 T6751 prep on,Effect
R4520 T6756 T6757 amod inflammatory,expression
R4521 T6757 T6755 pobj expression,on
R4522 T6758 T6757 compound gene,expression
R4523 T6759 T6751 prep in,Effect
R4524 T6760 T6761 nmod CF,mouse
R4525 T6761 T6762 nmod mouse,intestine
R4526 T6762 T6759 pobj intestine,in
R4527 T6763 T6762 amod small,intestine
R4528 T6764 T6751 punct .,Effect
R4529 T6766 T6767 compound RNA,levels
R4530 T6767 T6769 nsubjpass levels,determined
R4531 T6768 T6767 compound expression,levels
R4532 T6770 T6769 auxpass were,determined
R4533 T6771 T6769 prep by,determined
R4534 T6772 T6773 amod quantitative,PCR
R4535 T6773 T6771 pobj PCR,by
R4536 T6774 T6775 amod real,time
R4537 T6775 T6773 compound time,PCR
R4538 T6776 T6775 punct -,time
R4539 T6777 T6773 compound RT,PCR
R4540 T6778 T6773 punct -,PCR
R4541 T6779 T6769 advcl using,determined
R4542 T6780 T6781 npadvmod gene,specific
R4543 T6781 T6783 amod specific,primers
R4544 T6782 T6781 punct -,specific
R4545 T6783 T6779 dobj primers,using
R4546 T6784 T6769 punct .,determined
R4547 T6786 T6787 nsubjpass Data,expressed
R4548 T6788 T6787 auxpass are,expressed
R4549 T6789 T6787 advcl relative,expressed
R4550 T6790 T6789 prep to,relative
R4551 T6791 T6792 compound GAPDH,mRNA
R4552 T6792 T6790 pobj mRNA,to
R4553 T6793 T6792 punct ", ",mRNA
R4554 T6794 T6795 dep which,vary
R4555 T6795 T6792 relcl vary,mRNA
R4556 T6796 T6795 aux does,vary
R4557 T6797 T6795 neg not,vary
R4558 T6798 T6795 prep between,vary
R4559 T6799 T6800 amod wild,type
R4560 T6800 T6801 nmod type,mice
R4561 T6801 T6798 pobj mice,between
R4562 T6802 T6800 cc and,type
R4563 T6803 T6800 conj CF,type
R4564 T6804 T6787 punct .,expressed
R4565 T6806 T6807 nsubj Data,are
R4566 T6808 T6809 nmod means,SEM
R4567 T6809 T6807 attr SEM,are
R4568 T6810 T6809 punct ±,SEM
R4569 T6811 T6807 punct .,are
R4570 T6813 T6814 punct (,*
R4571 T6814 T6815 meta *,0.005
R4572 T6815 T6828 dep 0.005,CF
R4573 T6816 T6814 punct ),*
R4574 T6817 T6815 dep CF,0.005
R4575 T6818 T6817 cc vs,CF
R4576 T6819 T6820 amod wild,type
R4577 T6820 T6817 conj type,CF
R4578 T6821 T6817 prep on,CF
R4579 T6822 T6823 det the,background
R4580 T6823 T6821 pobj background,on
R4581 T6824 T6823 compound B6,background
R4582 T6825 T6815 punct ", ",0.005
R4583 T6826 T6815 nsubj P,0.005
R4584 T6827 T6815 punct <,0.005
R4585 T6829 T6828 punct ;,CF
R4586 T6830 T6831 punct (,+
R4587 T6831 T6828 meta +,CF
R4588 T6832 T6831 punct ),+
R4589 T6833 T6828 prep on,CF
R4590 T6834 T6835 det the,background
R4591 T6835 T6833 pobj background,on
R4592 T6836 T6835 amod mixed,background
R4593 T6837 T6828 cc vs,CF
R4594 T6838 T6828 conj CF,CF
R4595 T6839 T6838 prep on,CF
R4596 T6840 T6841 det the,background
R4597 T6841 T6839 pobj background,on
R4598 T6842 T6841 compound B6,background
R4599 T6843 T6828 punct ", ",CF
R4600 T6844 T6845 nsubj P,0.05
R4601 T6845 T6828 dep 0.05,CF
R4602 T6846 T6845 punct <,0.05
R4603 T6847 T6845 prep by,0.05
R4604 T6848 T6847 pobj ANOVA,by
R4605 T6849 T6845 prep with,0.05
R4606 T6850 T6851 det a,test
R4607 T6851 T6849 pobj test,with
R4608 T6852 T6851 amod post-hoc,test
R4609 T6853 T6851 poss Tukey,test
R4610 T6854 T6853 case 's,Tukey
R4611 T6855 T6828 punct .,CF
R4612 T6857 T6858 expl There,were
R4613 T6859 T6860 det no,differences
R4614 T6860 T6858 attr differences,were
R4615 T6861 T6860 amod significant,differences
R4616 T6862 T6858 prep for,were
R4617 T6863 T6862 pobj any,for
R4618 T6864 T6863 prep of,any
R4619 T6865 T6866 det the,genes
R4620 T6866 T6864 pobj genes,of
R4621 T6867 T6866 nummod 6,genes
R4622 T6868 T6866 acl comparing,genes
R4623 T6869 T6868 punct : ,comparing
R4624 T6870 T6871 amod wild,type
R4625 T6871 T6872 compound type,mice
R4626 T6872 T6868 dobj mice,comparing
R4627 T6873 T6872 compound B6,mice
R4628 T6874 T6872 cc vs,mice
R4629 T6875 T6876 amod wild,type
R4630 T6876 T6877 nmod type,background
R4631 T6877 T6872 conj background,mice
R4632 T6878 T6877 amod mixed,background
R4633 T6879 T6872 punct ;,mice
R4634 T6880 T6872 cc or,mice
R4635 T6881 T6882 compound CF,mice
R4636 T6882 T6872 conj mice,mice
R4637 T6883 T6882 prep on,mice
R4638 T6884 T6885 det the,background
R4639 T6885 T6883 pobj background,on
R4640 T6886 T6885 amod mixed,background
R4641 T6887 T6882 cc vs,mice
R4642 T6888 T6889 amod wild,type
R4643 T6889 T6882 conj type,mice
R4644 T6890 T6889 prep on,type
R4645 T6891 T6892 det either,background
R4646 T6892 T6890 pobj background,on
R4647 T6893 T6858 punct .,were
R4648 T6895 T6896 expl There,were
R4649 T6897 T6898 quantmod 8,11
R4650 T6898 T6900 nummod 11,samples
R4651 T6899 T6898 punct –,11
R4652 T6900 T6896 attr samples,were
R4653 T6901 T6900 acl analyzed,samples
R4654 T6902 T6901 prep per,analyzed
R4655 T6903 T6902 pobj group,per
R4656 T6904 T6901 prep for,analyzed
R4657 T6905 T6906 det each,gene
R4658 T6906 T6904 pobj gene,for
R4659 T6907 T6896 punct .,were