PMC:1140370 / 28060-37852 JSONTXT 6 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T8790 11-14 NN denotes DNA
T8791 15-23 NN denotes helicase
T8792 24-26 VBZ denotes is
T8793 27-28 DT denotes a
T8795 29-36 JJ denotes central
T8794 37-43 NN denotes factor
T8796 44-47 IN denotes for
T8797 48-57 NN denotes operation
T8798 58-60 IN denotes of
T8799 61-72 NN denotes replication
T8800 73-78 NNS denotes forks
T8801 78-79 . denotes .
T8802 79-159 sentence denotes It also plays a crucial role in the initiation step at the replication origins.
T8803 80-82 PRP denotes It
T8805 83-87 RB denotes also
T8804 88-93 VBZ denotes plays
T8806 94-95 DT denotes a
T8808 96-103 JJ denotes crucial
T8807 104-108 NN denotes role
T8809 109-111 IN denotes in
T8810 112-115 DT denotes the
T8812 116-126 NN denotes initiation
T8811 127-131 NN denotes step
T8813 132-134 IN denotes at
T8814 135-138 DT denotes the
T8816 139-150 NN denotes replication
T8815 151-158 NNS denotes origins
T8817 158-159 . denotes .
T8818 159-357 sentence denotes Therefore, the elucidation of how the replicative helicases interact with DNA substrate and how they are activated is crucial for understanding the molecular basis of initiation of DNA replication.
T8819 160-169 RB denotes Therefore
T8821 169-171 , denotes ,
T8822 171-174 DT denotes the
T8823 175-186 NN denotes elucidation
T8824 187-189 IN denotes of
T8825 190-193 WRB denotes how
T8827 194-197 DT denotes the
T8829 198-209 JJ denotes replicative
T8828 210-219 NNS denotes helicases
T8826 220-228 VBP denotes interact
T8830 229-233 IN denotes with
T8831 234-237 NN denotes DNA
T8832 238-247 NN denotes substrate
T8833 248-251 CC denotes and
T8834 252-255 WRB denotes how
T8836 256-260 PRP denotes they
T8837 261-264 VBP denotes are
T8835 265-274 VBN denotes activated
T8820 275-277 VBZ denotes is
T8838 278-285 JJ denotes crucial
T8839 286-289 IN denotes for
T8840 290-303 VBG denotes understanding
T8841 304-307 DT denotes the
T8843 308-317 JJ denotes molecular
T8842 318-323 NN denotes basis
T8844 324-326 IN denotes of
T8845 327-337 NN denotes initiation
T8846 338-340 IN denotes of
T8847 341-344 NN denotes DNA
T8848 345-356 NN denotes replication
T8849 356-357 . denotes .
T8850 357-446 sentence denotes It is now believed that Mcm is a major component of the eukaryotic replicative helicase.
T8851 358-360 PRP denotes It
T8853 361-363 VBZ denotes is
T8854 364-367 RB denotes now
T8852 368-376 VBN denotes believed
T8855 377-381 IN denotes that
T8857 382-385 NN denotes Mcm
T8856 386-388 VBZ denotes is
T8858 389-390 DT denotes a
T8860 391-396 JJ denotes major
T8859 397-406 NN denotes component
T8861 407-409 IN denotes of
T8862 410-413 DT denotes the
T8864 414-424 JJ denotes eukaryotic
T8865 425-436 JJ denotes replicative
T8863 437-445 NN denotes helicase
T8866 445-446 . denotes .
T8867 446-611 sentence denotes In this report, we have conducted detailed analyses on binding and helicase actions of mouse Mcm4/6/7 using various substrates including fork and bubble structures.
T8868 447-449 IN denotes In
T8870 450-454 DT denotes this
T8871 455-461 NN denotes report
T8872 461-463 , denotes ,
T8873 463-465 PRP denotes we
T8874 466-470 VBP denotes have
T8869 471-480 VBN denotes conducted
T8875 481-489 JJ denotes detailed
T8876 490-498 NNS denotes analyses
T8877 499-501 IN denotes on
T8878 502-509 NN denotes binding
T8880 510-513 CC denotes and
T8881 514-522 NN denotes helicase
T8879 523-530 NNS denotes actions
T8882 531-533 IN denotes of
T8883 534-539 NN denotes mouse
T8884 540-544 NN denotes Mcm4
T8885 544-545 HYPH denotes /
T8886 545-546 CD denotes 6
T8887 546-547 HYPH denotes /
T8888 547-548 CD denotes 7
T8889 549-554 VBG denotes using
T8890 555-562 JJ denotes various
T8891 563-573 NNS denotes substrates
T8892 574-583 VBG denotes including
T8893 584-588 NN denotes fork
T8895 589-592 CC denotes and
T8896 593-599 NN denotes bubble
T8894 600-610 NNS denotes structures
T8897 610-611 . denotes .
T9088 613-618 NNS denotes Modes
T9089 619-621 IN denotes of
T9090 622-629 NN denotes binding
T9091 630-633 CC denotes and
T9092 634-644 NN denotes activation
T9093 645-647 IN denotes of
T9094 648-652 NN denotes Mcm4
T9096 652-653 HYPH denotes /
T9097 653-654 CD denotes 6
T9098 654-655 HYPH denotes /
T9099 655-656 CD denotes 7
T9095 657-665 NN denotes helicase
T9100 666-668 IN denotes on
T9101 669-670 DT denotes a
T9103 671-677 NN denotes bubble
T9102 678-687 NN denotes structure
T9104 687-794 sentence denotes Initiation of DNA replication is associated with localized melting of duplex DNA near replication origins.
T9105 688-698 NN denotes Initiation
T9107 699-701 IN denotes of
T9108 702-705 NN denotes DNA
T9109 706-717 NN denotes replication
T9110 718-720 VBZ denotes is
T9106 721-731 VBN denotes associated
T9111 732-736 IN denotes with
T9112 737-746 VBN denotes localized
T9113 747-754 NN denotes melting
T9114 755-757 IN denotes of
T9115 758-764 NN denotes duplex
T9116 765-768 NN denotes DNA
T9117 769-773 JJ denotes near
T9118 774-785 NN denotes replication
T9119 786-793 NNS denotes origins
T9120 793-794 . denotes .
T9121 794-913 sentence denotes Helicases are loaded onto replication forks through the melted region, induced by initiator binding, in bacteria (32).
T9122 795-804 NNS denotes Helicases
T9124 805-808 VBP denotes are
T9123 809-815 VBN denotes loaded
T9125 816-820 IN denotes onto
T9126 821-832 NN denotes replication
T9127 833-838 NNS denotes forks
T9128 839-846 IN denotes through
T9129 847-850 DT denotes the
T9131 851-857 VBN denotes melted
T9130 858-864 NN denotes region
T9132 864-866 , denotes ,
T9133 866-873 VBN denotes induced
T9134 874-876 IN denotes by
T9135 877-886 NN denotes initiator
T9136 887-894 NN denotes binding
T9137 894-896 , denotes ,
T9138 896-898 IN denotes in
T9139 899-907 NNS denotes bacteria
T9140 908-909 -LRB- denotes (
T9141 909-911 CD denotes 32
T9142 911-912 -RRB- denotes )
T9143 912-913 . denotes .
T9144 913-1044 sentence denotes We previously reported that Mcm4/6/7 can be loaded onto a bubble-like structure and can serve as a DNA helicase at the forks (13).
T9145 914-916 PRP denotes We
T9147 917-927 RB denotes previously
T9146 928-936 VBD denotes reported
T9148 937-941 IN denotes that
T9150 942-946 NN denotes Mcm4
T9151 946-947 HYPH denotes /
T9152 947-948 CD denotes 6
T9153 948-949 HYPH denotes /
T9154 949-950 CD denotes 7
T9155 951-954 MD denotes can
T9156 955-957 VB denotes be
T9149 958-964 VBN denotes loaded
T9157 965-969 IN denotes onto
T9158 970-971 DT denotes a
T9160 972-978 NN denotes bubble
T9162 978-979 HYPH denotes -
T9161 979-983 JJ denotes like
T9159 984-993 NN denotes structure
T9163 994-997 CC denotes and
T9164 998-1001 MD denotes can
T9165 1002-1007 VB denotes serve
T9166 1008-1010 IN denotes as
T9167 1011-1012 DT denotes a
T9169 1013-1016 NN denotes DNA
T9168 1017-1025 NN denotes helicase
T9170 1026-1028 IN denotes at
T9171 1029-1032 DT denotes the
T9172 1033-1038 NNS denotes forks
T9173 1039-1040 -LRB- denotes (
T9174 1040-1042 CD denotes 13
T9175 1042-1043 -RRB- denotes )
T9176 1043-1044 . denotes .
T9177 1044-1238 sentence denotes The ability of Mcm4/6/7 to unwind the bubble substrate but not the conventional duplex DNA (Figures 2 and 13) indicates that Mcm can be loaded through the single-stranded segment of the bubble.
T9178 1045-1048 DT denotes The
T9179 1049-1056 NN denotes ability
T9181 1057-1059 IN denotes of
T9182 1060-1064 NN denotes Mcm4
T9183 1064-1065 HYPH denotes /
T9184 1065-1066 CD denotes 6
T9185 1066-1067 HYPH denotes /
T9186 1067-1068 CD denotes 7
T9187 1069-1071 TO denotes to
T9188 1072-1078 VB denotes unwind
T9189 1079-1082 DT denotes the
T9191 1083-1089 NN denotes bubble
T9190 1090-1099 NN denotes substrate
T9192 1100-1103 CC denotes but
T9193 1104-1107 RB denotes not
T9194 1108-1111 DT denotes the
T9196 1112-1124 JJ denotes conventional
T9197 1125-1131 NN denotes duplex
T9195 1132-1135 NN denotes DNA
T9198 1136-1137 -LRB- denotes (
T9200 1137-1144 NNS denotes Figures
T9199 1145-1146 CD denotes 2
T9201 1147-1150 CC denotes and
T9202 1151-1153 CD denotes 13
T9203 1153-1154 -RRB- denotes )
T9180 1155-1164 VBZ denotes indicates
T9204 1165-1169 IN denotes that
T9206 1170-1173 NN denotes Mcm
T9207 1174-1177 MD denotes can
T9208 1178-1180 VB denotes be
T9205 1181-1187 VBN denotes loaded
T9209 1188-1195 IN denotes through
T9210 1196-1199 DT denotes the
T9212 1200-1206 JJ denotes single
T9214 1206-1207 HYPH denotes -
T9213 1207-1215 VBN denotes stranded
T9211 1216-1223 NN denotes segment
T9215 1224-1226 IN denotes of
T9216 1227-1230 DT denotes the
T9217 1231-1237 NN denotes bubble
T9218 1237-1238 . denotes .
T9219 1238-1391 sentence denotes Furthermore, the Mcm4/6/7 complex displays marked preference for thymine-rich sequences within the single-stranded segment for helicase activation (13).
T9220 1239-1250 RB denotes Furthermore
T9222 1250-1252 , denotes ,
T9223 1252-1255 DT denotes the
T9225 1256-1260 NN denotes Mcm4
T9226 1260-1261 HYPH denotes /
T9227 1261-1262 CD denotes 6
T9228 1262-1263 HYPH denotes /
T9229 1263-1264 CD denotes 7
T9224 1265-1272 NN denotes complex
T9221 1273-1281 VBZ denotes displays
T9230 1282-1288 JJ denotes marked
T9231 1289-1299 NN denotes preference
T9232 1300-1303 IN denotes for
T9233 1304-1311 NN denotes thymine
T9235 1311-1312 HYPH denotes -
T9234 1312-1316 JJ denotes rich
T9236 1317-1326 NNS denotes sequences
T9237 1327-1333 IN denotes within
T9238 1334-1337 DT denotes the
T9240 1338-1344 JJ denotes single
T9242 1344-1345 HYPH denotes -
T9241 1345-1353 VBN denotes stranded
T9239 1354-1361 NN denotes segment
T9243 1362-1365 IN denotes for
T9244 1366-1374 NN denotes helicase
T9245 1375-1385 NN denotes activation
T9246 1386-1387 -LRB- denotes (
T9247 1387-1389 CD denotes 13
T9248 1389-1390 -RRB- denotes )
T9249 1390-1391 . denotes .
T9250 1391-1699 sentence denotes The results in this report indicate that helicase action of Mcm4/6/7 on synthetic bubbles may depend on the presence of an unpaired region of sufficient length (at least 40 nt), which may permit assembly of a double-hexameric complex on the substrate DNA, similar to SV40 T-antigen protein (Figure 2A) (21).
T9251 1392-1395 DT denotes The
T9252 1396-1403 NNS denotes results
T9254 1404-1406 IN denotes in
T9255 1407-1411 DT denotes this
T9256 1412-1418 NN denotes report
T9253 1419-1427 VBP denotes indicate
T9257 1428-1432 IN denotes that
T9259 1433-1441 NN denotes helicase
T9260 1442-1448 NN denotes action
T9261 1449-1451 IN denotes of
T9262 1452-1456 NN denotes Mcm4
T9263 1456-1457 HYPH denotes /
T9264 1457-1458 CD denotes 6
T9265 1458-1459 HYPH denotes /
T9266 1459-1460 CD denotes 7
T9267 1461-1463 IN denotes on
T9268 1464-1473 JJ denotes synthetic
T9269 1474-1481 NNS denotes bubbles
T9270 1482-1485 MD denotes may
T9258 1486-1492 VB denotes depend
T9271 1493-1495 IN denotes on
T9272 1496-1499 DT denotes the
T9273 1500-1508 NN denotes presence
T9274 1509-1511 IN denotes of
T9275 1512-1514 DT denotes an
T9277 1515-1523 JJ denotes unpaired
T9276 1524-1530 NN denotes region
T9278 1531-1533 IN denotes of
T9279 1534-1544 JJ denotes sufficient
T9280 1545-1551 NN denotes length
T9281 1552-1553 -LRB- denotes (
T9283 1553-1555 RB denotes at
T9284 1556-1561 RBS denotes least
T9285 1562-1564 CD denotes 40
T9282 1565-1567 NN denotes nt
T9286 1567-1568 -RRB- denotes )
T9287 1568-1570 , denotes ,
T9288 1570-1575 WDT denotes which
T9290 1576-1579 MD denotes may
T9289 1580-1586 VB denotes permit
T9291 1587-1595 NN denotes assembly
T9292 1596-1598 IN denotes of
T9293 1599-1600 DT denotes a
T9295 1601-1607 JJ denotes double
T9297 1607-1608 HYPH denotes -
T9296 1608-1617 JJ denotes hexameric
T9294 1618-1625 NN denotes complex
T9298 1626-1628 IN denotes on
T9299 1629-1632 DT denotes the
T9301 1633-1642 NN denotes substrate
T9300 1643-1646 NN denotes DNA
T9302 1646-1648 , denotes ,
T9303 1648-1655 JJ denotes similar
T9304 1656-1658 IN denotes to
T9305 1659-1663 NN denotes SV40
T9307 1664-1665 NN denotes T
T9309 1665-1666 HYPH denotes -
T9308 1666-1673 NN denotes antigen
T9306 1674-1681 NN denotes protein
T9310 1682-1683 -LRB- denotes (
T9312 1683-1689 NN denotes Figure
T9311 1690-1692 NN denotes 2A
T9313 1692-1693 -RRB- denotes )
T9314 1694-1695 -LRB- denotes (
T9315 1695-1697 CD denotes 21
T9316 1697-1698 -RRB- denotes )
T9317 1698-1699 . denotes .
T9318 1699-1858 sentence denotes When one strand of the single-stranded segment in T-rich bubble was replaced by guanine-rich sequences, the efficiency of unwinding was significantly reduced.
T9319 1700-1704 WRB denotes When
T9321 1705-1708 CD denotes one
T9322 1709-1715 NN denotes strand
T9323 1716-1718 IN denotes of
T9324 1719-1722 DT denotes the
T9326 1723-1729 JJ denotes single
T9328 1729-1730 HYPH denotes -
T9327 1730-1738 VBN denotes stranded
T9325 1739-1746 NN denotes segment
T9329 1747-1749 IN denotes in
T9330 1750-1751 NN denotes T
T9332 1751-1752 HYPH denotes -
T9331 1752-1756 JJ denotes rich
T9333 1757-1763 NN denotes bubble
T9334 1764-1767 VBD denotes was
T9320 1768-1776 VBN denotes replaced
T9336 1777-1779 IN denotes by
T9337 1780-1787 NN denotes guanine
T9339 1787-1788 HYPH denotes -
T9338 1788-1792 JJ denotes rich
T9340 1793-1802 NNS denotes sequences
T9341 1802-1804 , denotes ,
T9342 1804-1807 DT denotes the
T9343 1808-1818 NN denotes efficiency
T9344 1819-1821 IN denotes of
T9345 1822-1831 NN denotes unwinding
T9346 1832-1835 VBD denotes was
T9347 1836-1849 RB denotes significantly
T9335 1850-1857 VBN denotes reduced
T9348 1857-1858 . denotes .
T9349 1858-2042 sentence denotes Our footprinting analyses showed that Mcm4/6/7 strongly protects 25 nt single-stranded DNA segment adjacent to each branch point and proximal to 5′ ends of both strands of the bubble.
T9350 1859-1862 PRP$ denotes Our
T9352 1863-1875 NN denotes footprinting
T9351 1876-1884 NNS denotes analyses
T9353 1885-1891 VBD denotes showed
T9354 1892-1896 IN denotes that
T9356 1897-1901 NN denotes Mcm4
T9357 1901-1902 HYPH denotes /
T9358 1902-1903 CD denotes 6
T9359 1903-1904 HYPH denotes /
T9360 1904-1905 CD denotes 7
T9361 1906-1914 RB denotes strongly
T9355 1915-1923 VBZ denotes protects
T9362 1924-1926 CD denotes 25
T9363 1927-1929 NN denotes nt
T9365 1930-1936 JJ denotes single
T9367 1936-1937 HYPH denotes -
T9366 1937-1945 VBN denotes stranded
T9368 1946-1949 NN denotes DNA
T9364 1950-1957 NN denotes segment
T9369 1958-1966 JJ denotes adjacent
T9370 1967-1969 IN denotes to
T9371 1970-1974 DT denotes each
T9373 1975-1981 NN denotes branch
T9372 1982-1987 NN denotes point
T9374 1988-1991 CC denotes and
T9375 1992-2000 JJ denotes proximal
T9376 2001-2003 IN denotes to
T9377 2004-2005 CD denotes 5
T9379 2005-2006 SYM denotes
T9378 2007-2011 NNS denotes ends
T9380 2012-2014 IN denotes of
T9381 2015-2019 DT denotes both
T9382 2020-2027 NNS denotes strands
T9383 2028-2030 IN denotes of
T9384 2031-2034 DT denotes the
T9385 2035-2041 NN denotes bubble
T9386 2041-2042 . denotes .
T9387 2042-2284 sentence denotes At each fork, one Mcm4/6/7 complex is likely to encircle the single-stranded DNA strand and two hexamers may bind symmetrically to the bubble substrate, forming a double hexameric structure on the bubble (see schematic drawing of Figure 1A).
T9388 2043-2045 IN denotes At
T9390 2046-2050 DT denotes each
T9391 2051-2055 NN denotes fork
T9392 2055-2057 , denotes ,
T9393 2057-2060 CD denotes one
T9395 2061-2065 NN denotes Mcm4
T9396 2065-2066 HYPH denotes /
T9397 2066-2067 CD denotes 6
T9398 2067-2068 HYPH denotes /
T9399 2068-2069 CD denotes 7
T9394 2070-2077 NN denotes complex
T9389 2078-2080 VBZ denotes is
T9400 2081-2087 JJ denotes likely
T9401 2088-2090 TO denotes to
T9402 2091-2099 VB denotes encircle
T9403 2100-2103 DT denotes the
T9405 2104-2110 JJ denotes single
T9407 2110-2111 HYPH denotes -
T9406 2111-2119 VBN denotes stranded
T9408 2120-2123 NN denotes DNA
T9404 2124-2130 NN denotes strand
T9409 2131-2134 CC denotes and
T9410 2135-2138 CD denotes two
T9411 2139-2147 NNS denotes hexamers
T9413 2148-2151 MD denotes may
T9412 2152-2156 VB denotes bind
T9414 2157-2170 RB denotes symmetrically
T9415 2171-2173 IN denotes to
T9416 2174-2177 DT denotes the
T9418 2178-2184 NN denotes bubble
T9417 2185-2194 NN denotes substrate
T9419 2194-2196 , denotes ,
T9420 2196-2203 VBG denotes forming
T9421 2204-2205 DT denotes a
T9423 2206-2212 JJ denotes double
T9424 2213-2222 JJ denotes hexameric
T9422 2223-2232 NN denotes structure
T9425 2233-2235 IN denotes on
T9426 2236-2239 DT denotes the
T9427 2240-2246 NN denotes bubble
T9428 2247-2248 -LRB- denotes (
T9429 2248-2251 VB denotes see
T9430 2252-2261 JJ denotes schematic
T9431 2262-2269 NN denotes drawing
T9432 2270-2272 IN denotes of
T9433 2273-2279 NN denotes Figure
T9434 2280-2282 NN denotes 1A
T9435 2282-2283 -RRB- denotes )
T9436 2283-2284 . denotes .
T9437 2284-2473 sentence denotes Efficient unwinding into both directions may require simultaneous activation of both hexamers which may sit at the center while extruding the unwound single-stranded DNA through the rings.
T9438 2285-2294 JJ denotes Efficient
T9439 2295-2304 NN denotes unwinding
T9441 2305-2309 IN denotes into
T9442 2310-2314 DT denotes both
T9443 2315-2325 NNS denotes directions
T9444 2326-2329 MD denotes may
T9440 2330-2337 VB denotes require
T9445 2338-2350 JJ denotes simultaneous
T9446 2351-2361 NN denotes activation
T9447 2362-2364 IN denotes of
T9448 2365-2369 DT denotes both
T9449 2370-2378 NNS denotes hexamers
T9450 2379-2384 WDT denotes which
T9452 2385-2388 MD denotes may
T9451 2389-2392 VB denotes sit
T9453 2393-2395 IN denotes at
T9454 2396-2399 DT denotes the
T9455 2400-2406 NN denotes center
T9456 2407-2412 IN denotes while
T9457 2413-2422 VBG denotes extruding
T9458 2423-2426 DT denotes the
T9460 2427-2434 JJ denotes unwound
T9461 2435-2441 JJ denotes single
T9463 2441-2442 HYPH denotes -
T9462 2442-2450 VBN denotes stranded
T9459 2451-2454 NN denotes DNA
T9464 2455-2462 IN denotes through
T9465 2463-2466 DT denotes the
T9466 2467-2472 NNS denotes rings
T9467 2472-2473 . denotes .
T9468 2473-2569 sentence denotes This may closely resemble the proposed modes of binding and helicase actions of T-antigen (21).
T9469 2474-2478 DT denotes This
T9471 2479-2482 MD denotes may
T9472 2483-2490 RB denotes closely
T9470 2491-2499 VB denotes resemble
T9473 2500-2503 DT denotes the
T9475 2504-2512 VBN denotes proposed
T9474 2513-2518 NNS denotes modes
T9476 2519-2521 IN denotes of
T9477 2522-2529 NN denotes binding
T9479 2530-2533 CC denotes and
T9480 2534-2542 NN denotes helicase
T9478 2543-2550 NNS denotes actions
T9481 2551-2553 IN denotes of
T9482 2554-2555 NN denotes T
T9484 2555-2556 HYPH denotes -
T9483 2556-2563 NN denotes antigen
T9485 2564-2565 -LRB- denotes (
T9486 2565-2567 CD denotes 21
T9487 2567-2568 -RRB- denotes )
T9488 2568-2569 . denotes .
T9489 2569-2947 sentence denotes Although we cannot totally exclude the possibility that one Mcm4/6/7 hexamer at each fork unwinds the duplex independently, ring-shaped structures of mouse and archea MCM, as revealed by electron microscopy, bear much similarity to the recently solved structure of the SV40 large T-antigen (4,6), and are in favor of the double-hexameric structure of mouse Mcm on a bubble DNA.
T9490 2570-2578 IN denotes Although
T9492 2579-2581 PRP denotes we
T9493 2582-2585 MD denotes can
T9494 2585-2588 RB denotes not
T9495 2589-2596 RB denotes totally
T9491 2597-2604 VB denotes exclude
T9497 2605-2608 DT denotes the
T9498 2609-2620 NN denotes possibility
T9499 2621-2625 IN denotes that
T9501 2626-2629 CD denotes one
T9503 2630-2634 NN denotes Mcm4
T9504 2634-2635 HYPH denotes /
T9505 2635-2636 CD denotes 6
T9506 2636-2637 HYPH denotes /
T9507 2637-2638 CD denotes 7
T9502 2639-2646 NN denotes hexamer
T9508 2647-2649 IN denotes at
T9509 2650-2654 DT denotes each
T9510 2655-2659 NN denotes fork
T9500 2660-2667 VBZ denotes unwinds
T9511 2668-2671 DT denotes the
T9512 2672-2678 NN denotes duplex
T9513 2679-2692 RB denotes independently
T9514 2692-2694 , denotes ,
T9515 2694-2698 NN denotes ring
T9517 2698-2699 HYPH denotes -
T9516 2699-2705 VBN denotes shaped
T9518 2706-2716 NNS denotes structures
T9519 2717-2719 IN denotes of
T9520 2720-2725 NN denotes mouse
T9522 2726-2729 CC denotes and
T9523 2730-2736 NN denotes archea
T9521 2737-2740 NN denotes MCM
T9524 2740-2742 , denotes ,
T9525 2742-2744 IN denotes as
T9526 2745-2753 VBN denotes revealed
T9527 2754-2756 IN denotes by
T9528 2757-2765 NN denotes electron
T9529 2766-2776 NN denotes microscopy
T9530 2776-2778 , denotes ,
T9496 2778-2782 VBP denotes bear
T9531 2783-2787 JJ denotes much
T9532 2788-2798 NN denotes similarity
T9533 2799-2801 IN denotes to
T9534 2802-2805 DT denotes the
T9536 2806-2814 RB denotes recently
T9537 2815-2821 VBN denotes solved
T9535 2822-2831 NN denotes structure
T9538 2832-2834 IN denotes of
T9539 2835-2838 DT denotes the
T9541 2839-2843 NN denotes SV40
T9542 2844-2849 JJ denotes large
T9543 2850-2851 NN denotes T
T9544 2851-2852 HYPH denotes -
T9540 2852-2859 NN denotes antigen
T9545 2860-2861 -LRB- denotes (
T9547 2861-2862 CD denotes 4
T9548 2862-2863 , denotes ,
T9546 2863-2864 CD denotes 6
T9549 2864-2865 -RRB- denotes )
T9550 2865-2867 , denotes ,
T9551 2867-2870 CC denotes and
T9552 2871-2874 VBP denotes are
T9553 2875-2877 IN denotes in
T9554 2878-2883 NN denotes favor
T9555 2884-2886 IN denotes of
T9556 2887-2890 DT denotes the
T9558 2891-2897 JJ denotes double
T9560 2897-2898 HYPH denotes -
T9559 2898-2907 JJ denotes hexameric
T9557 2908-2917 NN denotes structure
T9561 2918-2920 IN denotes of
T9562 2921-2926 NN denotes mouse
T9563 2927-2930 NN denotes Mcm
T9564 2931-2933 IN denotes on
T9565 2934-2935 DT denotes a
T9567 2936-2942 NN denotes bubble
T9566 2943-2946 NN denotes DNA
T9568 2946-2947 . denotes .
T9856 2949-2958 NN denotes Substrate
T9858 2959-2962 CC denotes and
T9859 2963-2971 NN denotes sequence
T9857 2972-2983 NN denotes requirement
T9860 2984-2987 IN denotes for
T9861 2988-2992 NN denotes Mcm4
T9863 2992-2993 HYPH denotes /
T9864 2993-2994 CD denotes 6
T9865 2994-2995 HYPH denotes /
T9866 2995-2996 CD denotes 7
T9867 2997-3005 NN denotes helicase
T9862 3006-3016 NN denotes activation
T9868 3016-3194 sentence denotes DNA binding assays indicate that Mcm4/6/7 binds to those substrates containing single-stranded DNA regions regardless of the presence or absence of single-stranded 3′ or 5′ end.
T9869 3017-3020 NN denotes DNA
T9870 3021-3028 NN denotes binding
T9871 3029-3035 NNS denotes assays
T9872 3036-3044 VBP denotes indicate
T9873 3045-3049 IN denotes that
T9875 3050-3054 NN denotes Mcm4
T9876 3054-3055 HYPH denotes /
T9877 3055-3056 CD denotes 6
T9878 3056-3057 HYPH denotes /
T9879 3057-3058 CD denotes 7
T9874 3059-3064 VBZ denotes binds
T9880 3065-3067 IN denotes to
T9881 3068-3073 DT denotes those
T9882 3074-3084 NNS denotes substrates
T9883 3085-3095 VBG denotes containing
T9884 3096-3102 JJ denotes single
T9886 3102-3103 HYPH denotes -
T9885 3103-3111 VBN denotes stranded
T9888 3112-3115 NN denotes DNA
T9887 3116-3123 NNS denotes regions
T9889 3124-3134 RB denotes regardless
T9890 3135-3137 IN denotes of
T9891 3138-3141 DT denotes the
T9892 3142-3150 NN denotes presence
T9893 3151-3153 CC denotes or
T9894 3154-3161 NN denotes absence
T9895 3162-3164 IN denotes of
T9896 3165-3171 JJ denotes single
T9898 3171-3172 HYPH denotes -
T9897 3172-3180 VBN denotes stranded
T9900 3181-3182 CD denotes 3
T9901 3182-3183 SYM denotes
T9902 3184-3186 CC denotes or
T9903 3187-3188 CD denotes 5
T9904 3188-3189 SYM denotes
T9899 3190-3193 NN denotes end
T9905 3193-3194 . denotes .
T9906 3194-3295 sentence denotes Unwinding of the duplex DNA depends on translocation of single-stranded DNA from 3′ to 5′ direction.
T9907 3195-3204 NN denotes Unwinding
T9909 3205-3207 IN denotes of
T9910 3208-3211 DT denotes the
T9912 3212-3218 NN denotes duplex
T9911 3219-3222 NN denotes DNA
T9908 3223-3230 VBZ denotes depends
T9913 3231-3233 IN denotes on
T9914 3234-3247 NN denotes translocation
T9915 3248-3250 IN denotes of
T9916 3251-3257 JJ denotes single
T9918 3257-3258 HYPH denotes -
T9917 3258-3266 VBN denotes stranded
T9919 3267-3270 NN denotes DNA
T9920 3271-3275 IN denotes from
T9921 3276-3277 CD denotes 3
T9922 3277-3278 SYM denotes
T9923 3279-3281 IN denotes to
T9924 3282-3283 CD denotes 5
T9925 3283-3284 SYM denotes
T9926 3285-3294 NN denotes direction
T9927 3294-3295 . denotes .
T9928 3295-3431 sentence denotes This is most clearly shown by its helicase action on A-fork[5′] and 3′-extension but not on A-fork[3′], A-fork[3′,5′] nor 5′-extension.
T9929 3296-3300 DT denotes This
T9931 3301-3303 VBZ denotes is
T9932 3304-3308 RBS denotes most
T9933 3309-3316 RB denotes clearly
T9930 3317-3322 VBN denotes shown
T9934 3323-3325 IN denotes by
T9935 3326-3329 PRP$ denotes its
T9937 3330-3338 NN denotes helicase
T9936 3339-3345 NN denotes action
T9938 3346-3348 IN denotes on
T9939 3349-3350 NN denotes A
T9941 3350-3351 HYPH denotes -
T9940 3351-3355 NN denotes fork
T9943 3355-3356 -LRB- denotes [
T9944 3356-3357 CD denotes 5
T9945 3357-3358 SYM denotes
T9946 3358-3359 -RRB- denotes ]
T9947 3360-3363 CC denotes and
T9948 3364-3365 CD denotes 3
T9949 3365-3366 SYM denotes
T9950 3366-3367 HYPH denotes -
T9942 3367-3376 NN denotes extension
T9951 3377-3380 CC denotes but
T9952 3381-3384 RB denotes not
T9953 3385-3387 IN denotes on
T9954 3388-3389 NN denotes A
T9956 3389-3390 HYPH denotes -
T9955 3390-3394 NN denotes fork
T9958 3394-3395 -LRB- denotes [
T9959 3395-3396 CD denotes 3
T9960 3396-3397 SYM denotes
T9961 3397-3398 -RRB- denotes ]
T9962 3398-3400 , denotes ,
T9963 3400-3401 NN denotes A
T9965 3401-3402 HYPH denotes -
T9964 3402-3406 NN denotes fork
T9966 3406-3407 -LRB- denotes [
T9967 3407-3408 CD denotes 3
T9968 3408-3409 SYM denotes
T9969 3409-3410 , denotes ,
T9970 3410-3411 CD denotes 5
T9971 3411-3412 SYM denotes
T9972 3412-3413 -RRB- denotes ]
T9973 3414-3417 CC denotes nor
T9974 3418-3419 CD denotes 5
T9975 3419-3420 SYM denotes
T9976 3420-3421 HYPH denotes -
T9957 3421-3430 NN denotes extension
T9977 3430-3431 . denotes .
T9978 3431-3592 sentence denotes However, it does not necessarily require 3′ end of single-stranded DNA, since Mcm4/6/7 can displace annealing oligonucleotide on a circular single-stranded DNA.
T9979 3432-3439 RB denotes However
T9981 3439-3441 , denotes ,
T9982 3441-3443 PRP denotes it
T9983 3444-3448 VBZ denotes does
T9984 3449-3452 RB denotes not
T9985 3453-3464 RB denotes necessarily
T9980 3465-3472 VB denotes require
T9986 3473-3474 CD denotes 3
T9988 3474-3475 SYM denotes
T9987 3476-3479 NN denotes end
T9989 3480-3482 IN denotes of
T9990 3483-3489 JJ denotes single
T9992 3489-3490 HYPH denotes -
T9991 3490-3498 VBN denotes stranded
T9993 3499-3502 NN denotes DNA
T9994 3502-3504 , denotes ,
T9995 3504-3509 IN denotes since
T9997 3510-3514 NN denotes Mcm4
T9998 3514-3515 HYPH denotes /
T9999 3515-3516 CD denotes 6
T10000 3516-3517 HYPH denotes /
T10001 3517-3518 CD denotes 7
T10002 3519-3522 MD denotes can
T9996 3523-3531 VB denotes displace
T10003 3532-3541 VBG denotes annealing
T10004 3542-3557 NN denotes oligonucleotide
T10005 3558-3560 IN denotes on
T10006 3561-3562 DT denotes a
T10008 3563-3571 JJ denotes circular
T10009 3572-3578 JJ denotes single
T10011 3578-3579 HYPH denotes -
T10010 3579-3587 VBN denotes stranded
T10007 3588-3591 NN denotes DNA
T10012 3591-3592 . denotes .
T10013 3592-3750 sentence denotes The ability of the mouse Mcm4/6/7 to unwind 3′-extension is shared by the archaeal Mcm helicase but not by Mcm4/6/7 from S.pombe and S.cerevisiae (14,26,27).
T10014 3593-3596 DT denotes The
T10015 3597-3604 NN denotes ability
T10017 3605-3607 IN denotes of
T10018 3608-3611 DT denotes the
T10020 3612-3617 NN denotes mouse
T10019 3618-3622 NN denotes Mcm4
T10021 3622-3623 HYPH denotes /
T10022 3623-3624 CD denotes 6
T10023 3624-3625 HYPH denotes /
T10024 3625-3626 CD denotes 7
T10025 3627-3629 TO denotes to
T10026 3630-3636 VB denotes unwind
T10027 3637-3638 CD denotes 3
T10029 3638-3639 SYM denotes
T10030 3639-3640 HYPH denotes -
T10028 3640-3649 NN denotes extension
T10031 3650-3652 VBZ denotes is
T10016 3653-3659 VBN denotes shared
T10032 3660-3662 IN denotes by
T10033 3663-3666 DT denotes the
T10035 3667-3675 JJ denotes archaeal
T10036 3676-3679 NN denotes Mcm
T10034 3680-3688 NN denotes helicase
T10037 3689-3692 CC denotes but
T10038 3693-3696 RB denotes not
T10039 3697-3699 IN denotes by
T10040 3700-3704 NN denotes Mcm4
T10041 3704-3705 HYPH denotes /
T10042 3705-3706 CD denotes 6
T10043 3706-3707 HYPH denotes /
T10044 3707-3708 CD denotes 7
T10045 3709-3713 IN denotes from
T10046 3714-3721 NNP denotes S.pombe
T10047 3722-3725 CC denotes and
T10048 3726-3738 NNP denotes S.cerevisiae
T10049 3739-3740 -LRB- denotes (
T10051 3740-3742 CD denotes 14
T10052 3742-3743 , denotes ,
T10053 3743-3745 CD denotes 26
T10054 3745-3746 , denotes ,
T10050 3746-3748 CD denotes 27
T10055 3748-3749 -RRB- denotes )
T10056 3749-3750 . denotes .
T10057 3750-3899 sentence denotes The archaeal Mcm can unwind A-fork[3′] but eukaryotic Mcm4/6/7 cannot, since the former binds to double-stranded DNA but the latter does not (5,27).
T10058 3751-3754 DT denotes The
T10060 3755-3763 JJ denotes archaeal
T10059 3764-3767 NN denotes Mcm
T10062 3768-3771 MD denotes can
T10061 3772-3778 VB denotes unwind
T10063 3779-3780 NN denotes A
T10065 3780-3781 HYPH denotes -
T10064 3781-3785 NN denotes fork
T10066 3785-3786 -LRB- denotes [
T10067 3786-3787 CD denotes 3
T10068 3787-3788 SYM denotes
T10069 3788-3789 -RRB- denotes ]
T10070 3790-3793 CC denotes but
T10071 3794-3804 JJ denotes eukaryotic
T10072 3805-3809 NN denotes Mcm4
T10074 3809-3810 HYPH denotes /
T10075 3810-3811 CD denotes 6
T10076 3811-3812 HYPH denotes /
T10077 3812-3813 CD denotes 7
T10073 3814-3817 MD denotes can
T10078 3817-3820 RB denotes not
T10079 3820-3822 , denotes ,
T10080 3822-3827 IN denotes since
T10082 3828-3831 DT denotes the
T10083 3832-3838 NN denotes former
T10081 3839-3844 VBZ denotes binds
T10084 3845-3847 IN denotes to
T10085 3848-3854 JJ denotes double
T10087 3854-3855 HYPH denotes -
T10086 3855-3863 VBN denotes stranded
T10088 3864-3867 NN denotes DNA
T10089 3868-3871 CC denotes but
T10090 3872-3875 DT denotes the
T10091 3876-3882 JJ denotes latter
T10093 3883-3887 VBZ denotes does
T10094 3888-3891 RB denotes not
T10095 3892-3893 -LRB- denotes (
T10096 3893-3894 CD denotes 5
T10097 3894-3895 , denotes ,
T10092 3895-3897 CD denotes 27
T10098 3897-3898 -RRB- denotes )
T10099 3898-3899 . denotes .
T10100 3899-4029 sentence denotes While yeast Mcm helicases can translocate on duplex DNA, such activity was not observed with mammalian Mcm4/6/7 (data not shown).
T10101 3900-3905 IN denotes While
T10103 3906-3911 NN denotes yeast
T10104 3912-3915 NN denotes Mcm
T10105 3916-3925 NNS denotes helicases
T10106 3926-3929 MD denotes can
T10102 3930-3941 VB denotes translocate
T10108 3942-3944 IN denotes on
T10109 3945-3951 NN denotes duplex
T10110 3952-3955 NN denotes DNA
T10111 3955-3957 , denotes ,
T10112 3957-3961 JJ denotes such
T10113 3962-3970 NN denotes activity
T10114 3971-3974 VBD denotes was
T10115 3975-3978 RB denotes not
T10107 3979-3987 VBN denotes observed
T10116 3988-3992 IN denotes with
T10117 3993-4002 JJ denotes mammalian
T10118 4003-4007 NN denotes Mcm4
T10119 4007-4008 HYPH denotes /
T10120 4008-4009 CD denotes 6
T10121 4009-4010 HYPH denotes /
T10122 4010-4011 CD denotes 7
T10123 4012-4013 -LRB- denotes (
T10125 4013-4017 NNS denotes data
T10126 4018-4021 RB denotes not
T10124 4022-4027 VBN denotes shown
T10127 4027-4028 -RRB- denotes )
T10128 4028-4029 . denotes .
T10129 4029-4366 sentence denotes Occurrence of AT-rich sequences, with asymmetric distribution of adenine and thymine, near the replication origins, lead us to propose that Mcm may play a role in selection of initiation sites of mammalian DNA replication, and prompted us to examine the ability of sequences from human replication origins to activate Mcm4/6/7 helicase.
T10130 4030-4040 NN denotes Occurrence
T10132 4041-4043 IN denotes of
T10133 4044-4046 NN denotes AT
T10135 4046-4047 HYPH denotes -
T10134 4047-4051 JJ denotes rich
T10136 4052-4061 NNS denotes sequences
T10137 4061-4063 , denotes ,
T10138 4063-4067 IN denotes with
T10139 4068-4078 JJ denotes asymmetric
T10140 4079-4091 NN denotes distribution
T10141 4092-4094 IN denotes of
T10142 4095-4102 NN denotes adenine
T10143 4103-4106 CC denotes and
T10144 4107-4114 NN denotes thymine
T10145 4114-4116 , denotes ,
T10146 4116-4120 IN denotes near
T10147 4121-4124 DT denotes the
T10149 4125-4136 NN denotes replication
T10148 4137-4144 NNS denotes origins
T10150 4144-4146 , denotes ,
T10131 4146-4150 VBP denotes lead
T10151 4151-4153 PRP denotes us
T10152 4154-4156 TO denotes to
T10153 4157-4164 VB denotes propose
T10154 4165-4169 IN denotes that
T10156 4170-4173 NNP denotes Mcm
T10157 4174-4177 MD denotes may
T10155 4178-4182 VB denotes play
T10158 4183-4184 DT denotes a
T10159 4185-4189 NN denotes role
T10160 4190-4192 IN denotes in
T10161 4193-4202 NN denotes selection
T10162 4203-4205 IN denotes of
T10163 4206-4216 NN denotes initiation
T10164 4217-4222 NNS denotes sites
T10165 4223-4225 IN denotes of
T10166 4226-4235 JJ denotes mammalian
T10167 4236-4239 NN denotes DNA
T10168 4240-4251 NN denotes replication
T10169 4251-4253 , denotes ,
T10170 4253-4256 CC denotes and
T10171 4257-4265 VBD denotes prompted
T10172 4266-4268 PRP denotes us
T10173 4269-4271 TO denotes to
T10174 4272-4279 VB denotes examine
T10175 4280-4283 DT denotes the
T10176 4284-4291 NN denotes ability
T10177 4292-4294 IN denotes of
T10178 4295-4304 NNS denotes sequences
T10179 4305-4309 IN denotes from
T10180 4310-4315 JJ denotes human
T10182 4316-4327 NN denotes replication
T10181 4328-4335 NNS denotes origins
T10183 4336-4338 TO denotes to
T10184 4339-4347 VB denotes activate
T10185 4348-4352 NN denotes Mcm4
T10187 4352-4353 HYPH denotes /
T10188 4353-4354 CD denotes 6
T10189 4354-4355 HYPH denotes /
T10190 4355-4356 CD denotes 7
T10186 4357-4365 NN denotes helicase
T10191 4365-4366 . denotes .
T10192 4366-4455 sentence denotes Both lamin-B2 and c-myc origins served as efficient activator for Mcm helicase in vitro.
T10193 4367-4371 CC denotes Both
T10195 4372-4377 NN denotes lamin
T10196 4377-4378 HYPH denotes -
T10194 4378-4380 NN denotes B2
T10198 4381-4384 CC denotes and
T10199 4385-4386 NN denotes c
T10201 4386-4387 HYPH denotes -
T10200 4387-4390 NN denotes myc
T10197 4391-4398 NNS denotes origins
T10202 4399-4405 VBD denotes served
T10203 4406-4408 IN denotes as
T10204 4409-4418 JJ denotes efficient
T10205 4419-4428 NN denotes activator
T10206 4429-4432 IN denotes for
T10207 4433-4436 NN denotes Mcm
T10208 4437-4445 NN denotes helicase
T10209 4446-4448 FW denotes in
T10210 4449-4454 FW denotes vitro
T10211 4454-4455 . denotes .
T10212 4455-4584 sentence denotes Consistent with it, site-specific loading of Mcm in the DNA replication initiation zone of the c-myc was recently reported (33).
T10213 4456-4466 JJ denotes Consistent
T10215 4467-4471 IN denotes with
T10216 4472-4474 PRP denotes it
T10217 4474-4476 , denotes ,
T10218 4476-4480 NN denotes site
T10220 4480-4481 HYPH denotes -
T10219 4481-4489 JJ denotes specific
T10221 4490-4497 NN denotes loading
T10222 4498-4500 IN denotes of
T10223 4501-4504 NN denotes Mcm
T10224 4505-4507 IN denotes in
T10225 4508-4511 DT denotes the
T10227 4512-4515 NN denotes DNA
T10229 4516-4527 NN denotes replication
T10228 4528-4538 NN denotes initiation
T10226 4539-4543 NN denotes zone
T10230 4544-4546 IN denotes of
T10231 4547-4550 DT denotes the
T10233 4551-4552 NN denotes c
T10234 4552-4553 HYPH denotes -
T10232 4553-4556 NN denotes myc
T10235 4557-4560 VBD denotes was
T10236 4561-4569 RB denotes recently
T10214 4570-4578 VBN denotes reported
T10237 4579-4580 -LRB- denotes (
T10238 4580-4582 CD denotes 33
T10239 4582-4583 -RRB- denotes )
T10240 4583-4584 . denotes .
T10241 4584-4702 sentence denotes We have examined in detail the effect of sequence context of the single-stranded DNA on the helicase activity of Mcm.
T10242 4585-4587 PRP denotes We
T10244 4588-4592 VBP denotes have
T10243 4593-4601 VBN denotes examined
T10245 4602-4604 IN denotes in
T10246 4605-4611 NN denotes detail
T10247 4612-4615 DT denotes the
T10248 4616-4622 NN denotes effect
T10249 4623-4625 IN denotes of
T10250 4626-4634 NN denotes sequence
T10251 4635-4642 NN denotes context
T10252 4643-4645 IN denotes of
T10253 4646-4649 DT denotes the
T10255 4650-4656 JJ denotes single
T10257 4656-4657 HYPH denotes -
T10256 4657-4665 VBN denotes stranded
T10254 4666-4669 NN denotes DNA
T10258 4670-4672 IN denotes on
T10259 4673-4676 DT denotes the
T10261 4677-4685 NN denotes helicase
T10260 4686-4694 NN denotes activity
T10262 4695-4697 IN denotes of
T10263 4698-4701 NN denotes Mcm
T10264 4701-4702 . denotes .
T10265 4702-4800 sentence denotes The results indicate that thymine content of 50% is sufficient for the maximum helicase activity.
T10266 4703-4706 DT denotes The
T10267 4707-4714 NNS denotes results
T10268 4715-4723 VBP denotes indicate
T10269 4724-4728 IN denotes that
T10271 4729-4736 NN denotes thymine
T10272 4737-4744 NN denotes content
T10273 4745-4747 IN denotes of
T10274 4748-4750 CD denotes 50
T10275 4750-4751 NN denotes %
T10270 4752-4754 VBZ denotes is
T10276 4755-4765 JJ denotes sufficient
T10277 4766-4769 IN denotes for
T10278 4770-4773 DT denotes the
T10280 4774-4781 JJ denotes maximum
T10281 4782-4790 NN denotes helicase
T10279 4791-4799 NN denotes activity
T10282 4799-4800 . denotes .
T10283 4800-4906 sentence denotes The efficiency of displacement decreased as the thymine content of the 3′-tail dropped to 33% (Figure 6).
T10284 4801-4804 DT denotes The
T10285 4805-4815 NN denotes efficiency
T10287 4816-4818 IN denotes of
T10288 4819-4831 NN denotes displacement
T10286 4832-4841 VBD denotes decreased
T10289 4842-4844 IN denotes as
T10291 4845-4848 DT denotes the
T10293 4849-4856 NN denotes thymine
T10292 4857-4864 NN denotes content
T10294 4865-4867 IN denotes of
T10295 4868-4871 DT denotes the
T10297 4872-4873 CD denotes 3
T10298 4873-4874 SYM denotes
T10299 4874-4875 HYPH denotes -
T10296 4875-4879 NN denotes tail
T10290 4880-4887 VBD denotes dropped
T10300 4888-4890 IN denotes to
T10301 4891-4893 CD denotes 33
T10302 4893-4894 NN denotes %
T10303 4895-4896 -LRB- denotes (
T10304 4896-4902 NN denotes Figure
T10305 4903-4904 CD denotes 6
T10306 4904-4905 -RRB- denotes )
T10307 4905-4906 . denotes .
T10308 4906-5050 sentence denotes The stretches of thymine residues may not be necessarily required, since repeats of TC dinucleotides served as a potent activator for Mcm4/6/7.
T10309 4907-4910 DT denotes The
T10310 4911-4920 NNS denotes stretches
T10312 4921-4923 IN denotes of
T10313 4924-4931 NN denotes thymine
T10314 4932-4940 NNS denotes residues
T10315 4941-4944 MD denotes may
T10316 4945-4948 RB denotes not
T10317 4949-4951 VB denotes be
T10318 4952-4963 RB denotes necessarily
T10311 4964-4972 VBN denotes required
T10319 4972-4974 , denotes ,
T10320 4974-4979 IN denotes since
T10322 4980-4987 NNS denotes repeats
T10323 4988-4990 IN denotes of
T10324 4991-4993 NN denotes TC
T10325 4994-5007 NNS denotes dinucleotides
T10321 5008-5014 VBD denotes served
T10326 5015-5017 IN denotes as
T10327 5018-5019 DT denotes a
T10329 5020-5026 JJ denotes potent
T10328 5027-5036 NN denotes activator
T10330 5037-5040 IN denotes for
T10331 5041-5045 NN denotes Mcm4
T10332 5045-5046 HYPH denotes /
T10333 5046-5047 CD denotes 6
T10334 5047-5048 HYPH denotes /
T10335 5048-5049 CD denotes 7
T10336 5049-5050 . denotes .
T10337 5050-5175 sentence denotes We also noticed that the presence of a secondary structure within the single-stranded DNA is inhibitory for helicase action.
T10338 5051-5053 PRP denotes We
T10340 5054-5058 RB denotes also
T10339 5059-5066 VBD denotes noticed
T10341 5067-5071 IN denotes that
T10343 5072-5075 DT denotes the
T10344 5076-5084 NN denotes presence
T10345 5085-5087 IN denotes of
T10346 5088-5089 DT denotes a
T10348 5090-5099 JJ denotes secondary
T10347 5100-5109 NN denotes structure
T10349 5110-5116 IN denotes within
T10350 5117-5120 DT denotes the
T10352 5121-5127 JJ denotes single
T10354 5127-5128 HYPH denotes -
T10353 5128-5136 VBN denotes stranded
T10351 5137-5140 NN denotes DNA
T10342 5141-5143 VBZ denotes is
T10355 5144-5154 JJ denotes inhibitory
T10356 5155-5158 IN denotes for
T10357 5159-5167 NN denotes helicase
T10358 5168-5174 NN denotes action
T10359 5174-5175 . denotes .
T10360 5175-5287 sentence denotes Nuclease footprinting assays indicated that binding was interfered by the secondary structure (data not shown).
T10361 5176-5184 NN denotes Nuclease
T10362 5185-5197 NN denotes footprinting
T10363 5198-5204 NNS denotes assays
T10364 5205-5214 VBD denotes indicated
T10365 5215-5219 IN denotes that
T10367 5220-5227 NN denotes binding
T10368 5228-5231 VBD denotes was
T10366 5232-5242 VBN denotes interfered
T10369 5243-5245 IN denotes by
T10370 5246-5249 DT denotes the
T10372 5250-5259 JJ denotes secondary
T10371 5260-5269 NN denotes structure
T10373 5270-5271 -LRB- denotes (
T10375 5271-5275 NNS denotes data
T10376 5276-5279 RB denotes not
T10374 5280-5285 VBN denotes shown
T10377 5285-5286 -RRB- denotes )
T10378 5286-5287 . denotes .
T10379 5287-5695 sentence denotes Thus, we have concluded that Mcm4/6/7 helicase is most efficiently activated by non-structured single-stranded DNA with thymine content of 50% or more, although significant stimulation is observed also by DNA with less thymine content (Figure 7), suggesting that the sequence specificity for Mcm helicase activation is rather relaxed and that the extent of the activation may depend on the sequence context.
T10380 5288-5292 RB denotes Thus
T10382 5292-5294 , denotes ,
T10383 5294-5296 PRP denotes we
T10384 5297-5301 VBP denotes have
T10381 5302-5311 VBN denotes concluded
T10385 5312-5316 IN denotes that
T10387 5317-5321 NN denotes Mcm4
T10389 5321-5322 HYPH denotes /
T10390 5322-5323 CD denotes 6
T10391 5323-5324 HYPH denotes /
T10392 5324-5325 CD denotes 7
T10388 5326-5334 NN denotes helicase
T10393 5335-5337 VBZ denotes is
T10394 5338-5342 RBS denotes most
T10395 5343-5354 RB denotes efficiently
T10386 5355-5364 VBN denotes activated
T10396 5365-5367 IN denotes by
T10397 5368-5382 JJ denotes non-structured
T10399 5383-5389 JJ denotes single
T10401 5389-5390 HYPH denotes -
T10400 5390-5398 VBN denotes stranded
T10398 5399-5402 NN denotes DNA
T10402 5403-5407 IN denotes with
T10403 5408-5415 NN denotes thymine
T10404 5416-5423 NN denotes content
T10405 5424-5426 IN denotes of
T10406 5427-5429 CD denotes 50
T10407 5429-5430 NN denotes %
T10408 5431-5433 CC denotes or
T10409 5434-5438 JJR denotes more
T10410 5438-5440 , denotes ,
T10411 5440-5448 IN denotes although
T10413 5449-5460 JJ denotes significant
T10414 5461-5472 NN denotes stimulation
T10415 5473-5475 VBZ denotes is
T10412 5476-5484 VBN denotes observed
T10416 5485-5489 RB denotes also
T10417 5490-5492 IN denotes by
T10418 5493-5496 NN denotes DNA
T10419 5497-5501 IN denotes with
T10420 5502-5506 JJR denotes less
T10422 5507-5514 NN denotes thymine
T10421 5515-5522 NN denotes content
T10423 5523-5524 -LRB- denotes (
T10424 5524-5530 NN denotes Figure
T10425 5531-5532 CD denotes 7
T10426 5532-5533 -RRB- denotes )
T10427 5533-5535 , denotes ,
T10428 5535-5545 VBG denotes suggesting
T10429 5546-5550 IN denotes that
T10431 5551-5554 DT denotes the
T10433 5555-5563 NN denotes sequence
T10432 5564-5575 NN denotes specificity
T10434 5576-5579 IN denotes for
T10435 5580-5583 NN denotes Mcm
T10436 5584-5592 NN denotes helicase
T10437 5593-5603 NN denotes activation
T10430 5604-5606 VBZ denotes is
T10438 5607-5613 RB denotes rather
T10439 5614-5621 JJ denotes relaxed
T10440 5622-5625 CC denotes and
T10441 5626-5630 IN denotes that
T10443 5631-5634 DT denotes the
T10444 5635-5641 NN denotes extent
T10445 5642-5644 IN denotes of
T10446 5645-5648 DT denotes the
T10447 5649-5659 NN denotes activation
T10448 5660-5663 MD denotes may
T10442 5664-5670 VB denotes depend
T10449 5671-5673 IN denotes on
T10450 5674-5677 DT denotes the
T10452 5678-5686 NN denotes sequence
T10451 5687-5694 NN denotes context
T10453 5694-5695 . denotes .
T10454 5695-5993 sentence denotes This would be reasonable given the flexibility and differential regulation of site selection for initiation of DNA replication during development or in various cell types, as well as the variability in initiation potential of each replication origin on the genome even within the single cell type.
T10455 5696-5700 DT denotes This
T10457 5701-5706 MD denotes would
T10456 5707-5709 VB denotes be
T10458 5710-5720 JJ denotes reasonable
T10459 5721-5726 VBN denotes given
T10460 5727-5730 DT denotes the
T10461 5731-5742 NN denotes flexibility
T10462 5743-5746 CC denotes and
T10463 5747-5759 JJ denotes differential
T10464 5760-5770 NN denotes regulation
T10465 5771-5773 IN denotes of
T10466 5774-5778 NN denotes site
T10467 5779-5788 NN denotes selection
T10468 5789-5792 IN denotes for
T10469 5793-5803 NN denotes initiation
T10470 5804-5806 IN denotes of
T10471 5807-5810 NN denotes DNA
T10472 5811-5822 NN denotes replication
T10473 5823-5829 IN denotes during
T10474 5830-5841 NN denotes development
T10475 5842-5844 CC denotes or
T10476 5845-5847 IN denotes in
T10477 5848-5855 JJ denotes various
T10479 5856-5860 NN denotes cell
T10478 5861-5866 NNS denotes types
T10480 5866-5868 , denotes ,
T10481 5868-5870 RB denotes as
T10483 5871-5875 RB denotes well
T10482 5876-5878 IN denotes as
T10484 5879-5882 DT denotes the
T10485 5883-5894 NN denotes variability
T10486 5895-5897 IN denotes in
T10487 5898-5908 NN denotes initiation
T10488 5909-5918 NN denotes potential
T10489 5919-5921 IN denotes of
T10490 5922-5926 DT denotes each
T10492 5927-5938 NN denotes replication
T10491 5939-5945 NN denotes origin
T10493 5946-5948 IN denotes on
T10494 5949-5952 DT denotes the
T10495 5953-5959 NN denotes genome
T10496 5960-5964 RB denotes even
T10497 5965-5971 IN denotes within
T10498 5972-5975 DT denotes the
T10500 5976-5982 JJ denotes single
T10501 5983-5987 NN denotes cell
T10499 5988-5992 NN denotes type
T10502 5992-5993 . denotes .
T10855 5995-5999 NN denotes Mcm4
T10857 5999-6000 HYPH denotes /
T10858 6000-6001 CD denotes 6
T10859 6001-6002 HYPH denotes /
T10860 6002-6003 CD denotes 7
T10856 6004-6012 NN denotes helicase
T10861 6013-6019 IN denotes during
T10862 6020-6030 JJ denotes processive
T10863 6031-6040 NN denotes unwinding
T10864 6041-6043 IN denotes at
T10865 6044-6047 DT denotes the
T10866 6048-6052 NN denotes fork
T10867 6052-6238 sentence denotes The specific requirement of single-stranded thymine residues for activation of Mcm helicase prompted us to examine whether they are required also for processive unwinding of duplex DNA.
T10868 6053-6056 DT denotes The
T10870 6057-6065 JJ denotes specific
T10869 6066-6077 NN denotes requirement
T10872 6078-6080 IN denotes of
T10873 6081-6087 JJ denotes single
T10875 6087-6088 HYPH denotes -
T10874 6088-6096 VBN denotes stranded
T10877 6097-6104 NN denotes thymine
T10876 6105-6113 NNS denotes residues
T10878 6114-6117 IN denotes for
T10879 6118-6128 NN denotes activation
T10880 6129-6131 IN denotes of
T10881 6132-6135 NN denotes Mcm
T10882 6136-6144 NN denotes helicase
T10871 6145-6153 VBD denotes prompted
T10883 6154-6156 PRP denotes us
T10884 6157-6159 TO denotes to
T10885 6160-6167 VB denotes examine
T10886 6168-6175 IN denotes whether
T10888 6176-6180 PRP denotes they
T10889 6181-6184 VBP denotes are
T10887 6185-6193 VBN denotes required
T10890 6194-6198 RB denotes also
T10891 6199-6202 IN denotes for
T10892 6203-6213 JJ denotes processive
T10893 6214-6223 NN denotes unwinding
T10894 6224-6226 IN denotes of
T10895 6227-6233 NN denotes duplex
T10896 6234-6237 NN denotes DNA
T10897 6237-6238 . denotes .
T10898 6238-6358 sentence denotes Our results indicated that increase of GC pair in the duplex segment significantly inhibited the Mcm helicase activity.
T10899 6239-6242 PRP$ denotes Our
T10900 6243-6250 NNS denotes results
T10901 6251-6260 VBD denotes indicated
T10902 6261-6265 IN denotes that
T10904 6266-6274 NN denotes increase
T10905 6275-6277 IN denotes of
T10906 6278-6280 NN denotes GC
T10907 6281-6285 NN denotes pair
T10908 6286-6288 IN denotes in
T10909 6289-6292 DT denotes the
T10911 6293-6299 NN denotes duplex
T10910 6300-6307 NN denotes segment
T10912 6308-6321 RB denotes significantly
T10903 6322-6331 VBD denotes inhibited
T10913 6332-6335 DT denotes the
T10915 6336-6339 NN denotes Mcm
T10916 6340-6348 NN denotes helicase
T10914 6349-6357 NN denotes activity
T10917 6357-6358 . denotes .
T10918 6358-6530 sentence denotes Duplex DNA composed only of GC pairs (10 repeats of CGG) on a Y-fork was not displaced at all, while the same template was readily displaced by SV40 T-antigen (Figure 8B).
T10919 6359-6365 NN denotes Duplex
T10920 6366-6369 NN denotes DNA
T10922 6370-6378 VBN denotes composed
T10923 6379-6383 RB denotes only
T10924 6384-6386 IN denotes of
T10925 6387-6389 NN denotes GC
T10926 6390-6395 NNS denotes pairs
T10927 6396-6397 -LRB- denotes (
T10929 6397-6399 CD denotes 10
T10928 6400-6407 NNS denotes repeats
T10930 6408-6410 IN denotes of
T10931 6411-6414 NN denotes CGG
T10932 6414-6415 -RRB- denotes )
T10933 6416-6418 IN denotes on
T10934 6419-6420 DT denotes a
T10936 6421-6422 NN denotes Y
T10937 6422-6423 HYPH denotes -
T10935 6423-6427 NN denotes fork
T10938 6428-6431 VBD denotes was
T10939 6432-6435 RB denotes not
T10921 6436-6445 VBN denotes displaced
T10940 6446-6448 RB denotes at
T10941 6449-6452 RB denotes all
T10942 6452-6454 , denotes ,
T10943 6454-6459 IN denotes while
T10945 6460-6463 DT denotes the
T10947 6464-6468 JJ denotes same
T10946 6469-6477 NN denotes template
T10948 6478-6481 VBD denotes was
T10949 6482-6489 RB denotes readily
T10944 6490-6499 VBN denotes displaced
T10950 6500-6502 IN denotes by
T10951 6503-6507 NN denotes SV40
T10953 6508-6509 NN denotes T
T10954 6509-6510 HYPH denotes -
T10952 6510-6517 NN denotes antigen
T10955 6518-6519 -LRB- denotes (
T10957 6519-6525 NN denotes Figure
T10956 6526-6528 NN denotes 8B
T10958 6528-6529 -RRB- denotes )
T10959 6529-6530 . denotes .
T10960 6530-6666 sentence denotes Mcm helicase was inhibited by the presence of GC-rich duplex segment also on a circular single-stranded partial heteroduplex substrate.
T10961 6531-6534 NN denotes Mcm
T10962 6535-6543 NN denotes helicase
T10964 6544-6547 VBD denotes was
T10963 6548-6557 VBN denotes inhibited
T10965 6558-6560 IN denotes by
T10966 6561-6564 DT denotes the
T10967 6565-6573 NN denotes presence
T10968 6574-6576 IN denotes of
T10969 6577-6579 NN denotes GC
T10971 6579-6580 HYPH denotes -
T10970 6580-6584 JJ denotes rich
T10973 6585-6591 NN denotes duplex
T10972 6592-6599 NN denotes segment
T10974 6600-6604 RB denotes also
T10975 6605-6607 IN denotes on
T10976 6608-6609 DT denotes a
T10978 6610-6618 JJ denotes circular
T10979 6619-6625 JJ denotes single
T10981 6625-6626 HYPH denotes -
T10980 6626-6634 VBN denotes stranded
T10982 6635-6642 JJ denotes partial
T10983 6643-6655 NN denotes heteroduplex
T10977 6656-6665 NN denotes substrate
T10984 6665-6666 . denotes .
T10985 6666-6824 sentence denotes However, on this substrate, Mcm4/6/7 was able to displace DNA past the GC-rich region, albeit to a limited extent, when it was added at a high concentration.
T10986 6667-6674 RB denotes However
T10988 6674-6676 , denotes ,
T10989 6676-6678 IN denotes on
T10990 6679-6683 DT denotes this
T10991 6684-6693 NN denotes substrate
T10992 6693-6695 , denotes ,
T10993 6695-6699 NN denotes Mcm4
T10994 6699-6700 HYPH denotes /
T10995 6700-6701 CD denotes 6
T10996 6701-6702 HYPH denotes /
T10997 6702-6703 CD denotes 7
T10987 6704-6707 VBD denotes was
T10998 6708-6712 JJ denotes able
T10999 6713-6715 TO denotes to
T11000 6716-6724 VB denotes displace
T11001 6725-6728 NN denotes DNA
T11002 6729-6733 IN denotes past
T11003 6734-6737 DT denotes the
T11005 6738-6740 NN denotes GC
T11007 6740-6741 HYPH denotes -
T11006 6741-6745 JJ denotes rich
T11004 6746-6752 NN denotes region
T11008 6752-6754 , denotes ,
T11009 6754-6760 IN denotes albeit
T11010 6761-6763 IN denotes to
T11011 6764-6765 DT denotes a
T11013 6766-6773 VBN denotes limited
T11012 6774-6780 NN denotes extent
T11014 6780-6782 , denotes ,
T11015 6782-6786 WRB denotes when
T11017 6787-6789 PRP denotes it
T11018 6790-6793 VBD denotes was
T11016 6794-6799 VBN denotes added
T11019 6800-6802 IN denotes at
T11020 6803-6804 DT denotes a
T11022 6805-6809 JJ denotes high
T11021 6810-6823 NN denotes concentration
T11023 6823-6824 . denotes .
T11024 6824-6991 sentence denotes On the partial heteroduplex template, Mcm is loaded onto the circular single-stranded DNA of 6.4 kb, while it is loaded onto the 50 nt long 3′-tail DNA on the Y-fork.
T11025 6825-6827 IN denotes On
T11027 6828-6831 DT denotes the
T11029 6832-6839 JJ denotes partial
T11030 6840-6852 NN denotes heteroduplex
T11028 6853-6861 NN denotes template
T11031 6861-6863 , denotes ,
T11032 6863-6866 NN denotes Mcm
T11033 6867-6869 VBZ denotes is
T11026 6870-6876 VBN denotes loaded
T11034 6877-6881 IN denotes onto
T11035 6882-6885 DT denotes the
T11037 6886-6894 JJ denotes circular
T11038 6895-6901 JJ denotes single
T11040 6901-6902 HYPH denotes -
T11039 6902-6910 VBN denotes stranded
T11036 6911-6914 NN denotes DNA
T11041 6915-6917 IN denotes of
T11042 6918-6921 CD denotes 6.4
T11043 6922-6924 NN denotes kb
T11044 6924-6926 , denotes ,
T11045 6926-6931 IN denotes while
T11047 6932-6934 PRP denotes it
T11048 6935-6937 VBZ denotes is
T11046 6938-6944 VBN denotes loaded
T11049 6945-6949 IN denotes onto
T11050 6950-6953 DT denotes the
T11052 6954-6956 CD denotes 50
T11053 6957-6959 NN denotes nt
T11054 6960-6964 JJ denotes long
T11055 6965-6966 CD denotes 3
T11057 6966-6967 SYM denotes
T11058 6967-6968 HYPH denotes -
T11056 6968-6972 NN denotes tail
T11051 6973-6976 NN denotes DNA
T11059 6977-6979 IN denotes on
T11060 6980-6983 DT denotes the
T11062 6984-6985 NN denotes Y
T11063 6985-6986 HYPH denotes -
T11061 6986-6990 NN denotes fork
T11064 6990-6991 . denotes .
T11065 6991-7075 sentence denotes Thus, the difference of helicase actions may reflect the efficiency of Mcm loading.
T11066 6992-6996 RB denotes Thus
T11068 6996-6998 , denotes ,
T11069 6998-7001 DT denotes the
T11070 7002-7012 NN denotes difference
T11071 7013-7015 IN denotes of
T11072 7016-7024 NN denotes helicase
T11073 7025-7032 NNS denotes actions
T11074 7033-7036 MD denotes may
T11067 7037-7044 VB denotes reflect
T11075 7045-7048 DT denotes the
T11076 7049-7059 NN denotes efficiency
T11077 7060-7062 IN denotes of
T11078 7063-7066 NN denotes Mcm
T11079 7067-7074 NN denotes loading
T11080 7074-7075 . denotes .
T11081 7075-7292 sentence denotes Alternatively, the presence of ‘random’ sequence at the initially unwound duplex segment in the former template may engage the Mcm helicase in a more active conformation which can displace the GC-rich duplex segment.
T11082 7076-7089 RB denotes Alternatively
T11084 7089-7091 , denotes ,
T11085 7091-7094 DT denotes the
T11086 7095-7103 NN denotes presence
T11087 7104-7106 IN denotes of
T11088 7107-7108 `` denotes
T11089 7108-7114 JJ denotes random
T11091 7114-7115 '' denotes
T11090 7116-7124 NN denotes sequence
T11092 7125-7127 IN denotes at
T11093 7128-7131 DT denotes the
T11095 7132-7141 RB denotes initially
T11096 7142-7149 JJ denotes unwound
T11097 7150-7156 NN denotes duplex
T11094 7157-7164 NN denotes segment
T11098 7165-7167 IN denotes in
T11099 7168-7171 DT denotes the
T11101 7172-7178 JJ denotes former
T11100 7179-7187 NN denotes template
T11102 7188-7191 MD denotes may
T11083 7192-7198 VB denotes engage
T11103 7199-7202 DT denotes the
T11105 7203-7206 NN denotes Mcm
T11104 7207-7215 NN denotes helicase
T11106 7216-7218 IN denotes in
T11107 7219-7220 DT denotes a
T11109 7221-7225 RBR denotes more
T11110 7226-7232 JJ denotes active
T11108 7233-7245 NN denotes conformation
T11111 7246-7251 WDT denotes which
T11113 7252-7255 MD denotes can
T11112 7256-7264 VB denotes displace
T11114 7265-7268 DT denotes the
T11116 7269-7271 NN denotes GC
T11118 7271-7272 HYPH denotes -
T11117 7272-7276 JJ denotes rich
T11119 7277-7283 NN denotes duplex
T11115 7284-7291 NN denotes segment
T11120 7291-7292 . denotes .
T11121 7292-7398 sentence denotes On Y-fork substrates, increase of AT base pairs in the duplex (10 repeats of CTT) restored the unwinding.
T11122 7293-7295 IN denotes On
T11124 7296-7297 NN denotes Y
T11126 7297-7298 HYPH denotes -
T11125 7298-7302 NN denotes fork
T11127 7303-7313 NNS denotes substrates
T11128 7313-7315 , denotes ,
T11129 7315-7323 NN denotes increase
T11130 7324-7326 IN denotes of
T11131 7327-7329 NN denotes AT
T11133 7330-7334 NN denotes base
T11132 7335-7340 NNS denotes pairs
T11134 7341-7343 IN denotes in
T11135 7344-7347 DT denotes the
T11136 7348-7354 NN denotes duplex
T11137 7355-7356 -LRB- denotes (
T11139 7356-7358 CD denotes 10
T11138 7359-7366 NNS denotes repeats
T11140 7367-7369 IN denotes of
T11141 7370-7373 NN denotes CTT
T11142 7373-7374 -RRB- denotes )
T11123 7375-7383 VBD denotes restored
T11143 7384-7387 DT denotes the
T11144 7388-7397 NN denotes unwinding
T11145 7397-7398 . denotes .
T11146 7398-7586 sentence denotes These results indicate either that thymine residues are required on the duplex DNA for continuous unwinding, or that Mcm4/6/7 is simply not efficient enough to unwind the stable GC pairs.
T11147 7399-7404 DT denotes These
T11148 7405-7412 NNS denotes results
T11149 7413-7421 VBP denotes indicate
T11150 7422-7428 CC denotes either
T11152 7429-7433 IN denotes that
T11153 7434-7441 NN denotes thymine
T11154 7442-7450 NNS denotes residues
T11155 7451-7454 VBP denotes are
T11151 7455-7463 VBN denotes required
T11156 7464-7466 IN denotes on
T11157 7467-7470 DT denotes the
T11159 7471-7477 NN denotes duplex
T11158 7478-7481 NN denotes DNA
T11160 7482-7485 IN denotes for
T11161 7486-7496 JJ denotes continuous
T11162 7497-7506 NN denotes unwinding
T11163 7506-7508 , denotes ,
T11164 7508-7510 CC denotes or
T11165 7511-7515 IN denotes that
T11167 7516-7520 NN denotes Mcm4
T11168 7520-7521 HYPH denotes /
T11169 7521-7522 CD denotes 6
T11170 7522-7523 HYPH denotes /
T11171 7523-7524 CD denotes 7
T11166 7525-7527 VBZ denotes is
T11172 7528-7534 RB denotes simply
T11173 7535-7538 RB denotes not
T11174 7539-7548 JJ denotes efficient
T11175 7549-7555 RB denotes enough
T11176 7556-7558 TO denotes to
T11177 7559-7565 VB denotes unwind
T11178 7566-7569 DT denotes the
T11180 7570-7576 JJ denotes stable
T11181 7577-7579 NN denotes GC
T11179 7580-7585 NNS denotes pairs
T11182 7585-7586 . denotes .
T11183 7586-7908 sentence denotes Replacement of the central guanosine with inosine in the CGG repeat duplex DNA resulted in displacement (Figure 8E) (31), suggesting that the continuous presence of AT base pair may not be essential for the Mcm helicase function and that the thermostability of GC base pairs is inhibitory for helicase action of Mcm4/6/7.
T11184 7587-7598 NN denotes Replacement
T11186 7599-7601 IN denotes of
T11187 7602-7605 DT denotes the
T11189 7606-7613 JJ denotes central
T11188 7614-7623 NN denotes guanosine
T11190 7624-7628 IN denotes with
T11191 7629-7636 NN denotes inosine
T11192 7637-7639 IN denotes in
T11193 7640-7643 DT denotes the
T11195 7644-7647 NN denotes CGG
T11196 7648-7654 NN denotes repeat
T11197 7655-7661 NN denotes duplex
T11194 7662-7665 NN denotes DNA
T11185 7666-7674 VBD denotes resulted
T11198 7675-7677 IN denotes in
T11199 7678-7690 NN denotes displacement
T11200 7691-7692 -LRB- denotes (
T11202 7692-7698 NN denotes Figure
T11201 7699-7701 NN denotes 8E
T11203 7701-7702 -RRB- denotes )
T11204 7703-7704 -LRB- denotes (
T11205 7704-7706 CD denotes 31
T11206 7706-7707 -RRB- denotes )
T11207 7707-7709 , denotes ,
T11208 7709-7719 VBG denotes suggesting
T11209 7720-7724 IN denotes that
T11211 7725-7728 DT denotes the
T11213 7729-7739 JJ denotes continuous
T11212 7740-7748 NN denotes presence
T11214 7749-7751 IN denotes of
T11215 7752-7754 NN denotes AT
T11217 7755-7759 NN denotes base
T11216 7760-7764 NN denotes pair
T11218 7765-7768 MD denotes may
T11219 7769-7772 RB denotes not
T11210 7773-7775 VB denotes be
T11220 7776-7785 JJ denotes essential
T11221 7786-7789 IN denotes for
T11222 7790-7793 DT denotes the
T11224 7794-7797 NN denotes Mcm
T11225 7798-7806 NN denotes helicase
T11223 7807-7815 NN denotes function
T11226 7816-7819 CC denotes and
T11227 7820-7824 IN denotes that
T11229 7825-7828 DT denotes the
T11230 7829-7844 NN denotes thermostability
T11231 7845-7847 IN denotes of
T11232 7848-7850 NN denotes GC
T11234 7851-7855 NN denotes base
T11233 7856-7861 NNS denotes pairs
T11228 7862-7864 VBZ denotes is
T11235 7865-7875 JJ denotes inhibitory
T11236 7876-7879 IN denotes for
T11237 7880-7888 NN denotes helicase
T11238 7889-7895 NN denotes action
T11239 7896-7898 IN denotes of
T11240 7899-7903 NN denotes Mcm4
T11241 7903-7904 HYPH denotes /
T11242 7904-7905 CD denotes 6
T11243 7905-7906 HYPH denotes /
T11244 7906-7907 CD denotes 7
T11245 7907-7908 . denotes .
T11246 7908-8097 sentence denotes The results described in this manuscript reveal potentially important features of mammalian Mcm4/6/7 helicase, which is likely to be a key component of the eukaryotic replicative helicase.
T11247 7909-7912 DT denotes The
T11248 7913-7920 NNS denotes results
T11250 7921-7930 VBN denotes described
T11251 7931-7933 IN denotes in
T11252 7934-7938 DT denotes this
T11253 7939-7949 NN denotes manuscript
T11249 7950-7956 VBP denotes reveal
T11254 7957-7968 RB denotes potentially
T11255 7969-7978 JJ denotes important
T11256 7979-7987 NNS denotes features
T11257 7988-7990 IN denotes of
T11258 7991-8000 JJ denotes mammalian
T11260 8001-8005 NN denotes Mcm4
T11261 8005-8006 HYPH denotes /
T11262 8006-8007 CD denotes 6
T11263 8007-8008 HYPH denotes /
T11264 8008-8009 CD denotes 7
T11259 8010-8018 NN denotes helicase
T11265 8018-8020 , denotes ,
T11266 8020-8025 WDT denotes which
T11267 8026-8028 VBZ denotes is
T11268 8029-8035 JJ denotes likely
T11269 8036-8038 TO denotes to
T11270 8039-8041 VB denotes be
T11271 8042-8043 DT denotes a
T11273 8044-8047 JJ denotes key
T11272 8048-8057 NN denotes component
T11274 8058-8060 IN denotes of
T11275 8061-8064 DT denotes the
T11277 8065-8075 JJ denotes eukaryotic
T11278 8076-8087 JJ denotes replicative
T11276 8088-8096 NN denotes helicase
T11279 8096-8097 . denotes .
T11280 8097-8361 sentence denotes Prior to initiation of DNA replication, Mcm helicase may adopt a double hexameric complex at the partially melted origin region, and may catalyze concurrent unwinding of duplex DNA into both directions, while stably associated with the origins of DNA replication.
T11281 8098-8103 JJ denotes Prior
T11282 8104-8106 IN denotes to
T11284 8107-8117 NN denotes initiation
T11285 8118-8120 IN denotes of
T11286 8121-8124 NN denotes DNA
T11287 8125-8136 NN denotes replication
T11288 8136-8138 , denotes ,
T11289 8138-8141 NN denotes Mcm
T11290 8142-8150 NN denotes helicase
T11291 8151-8154 MD denotes may
T11283 8155-8160 VB denotes adopt
T11292 8161-8162 DT denotes a
T11294 8163-8169 JJ denotes double
T11295 8170-8179 JJ denotes hexameric
T11293 8180-8187 NN denotes complex
T11296 8188-8190 IN denotes at
T11297 8191-8194 DT denotes the
T11299 8195-8204 RB denotes partially
T11300 8205-8211 VBN denotes melted
T11301 8212-8218 NN denotes origin
T11298 8219-8225 NN denotes region
T11302 8225-8227 , denotes ,
T11303 8227-8230 CC denotes and
T11304 8231-8234 MD denotes may
T11305 8235-8243 VB denotes catalyze
T11306 8244-8254 JJ denotes concurrent
T11307 8255-8264 NN denotes unwinding
T11308 8265-8267 IN denotes of
T11309 8268-8274 NN denotes duplex
T11310 8275-8278 NN denotes DNA
T11311 8279-8283 IN denotes into
T11312 8284-8288 DT denotes both
T11313 8289-8299 NNS denotes directions
T11314 8299-8301 , denotes ,
T11315 8301-8306 IN denotes while
T11317 8307-8313 RB denotes stably
T11316 8314-8324 VBN denotes associated
T11318 8325-8329 IN denotes with
T11319 8330-8333 DT denotes the
T11320 8334-8341 NNS denotes origins
T11321 8342-8344 IN denotes of
T11322 8345-8348 NN denotes DNA
T11323 8349-8360 NN denotes replication
T11324 8360-8361 . denotes .
T11325 8361-8451 sentence denotes This is similar to the T-antigen model originally proposed by Smelkova and Borowiec (21).
T11326 8362-8366 DT denotes This
T11327 8367-8369 VBZ denotes is
T11328 8370-8377 JJ denotes similar
T11329 8378-8380 IN denotes to
T11330 8381-8384 DT denotes the
T11332 8385-8386 NN denotes T
T11334 8386-8387 HYPH denotes -
T11333 8387-8394 NN denotes antigen
T11331 8395-8400 NN denotes model
T11335 8401-8411 RB denotes originally
T11336 8412-8420 VBN denotes proposed
T11337 8421-8423 IN denotes by
T11338 8424-8432 NNP denotes Smelkova
T11339 8433-8436 CC denotes and
T11340 8437-8445 NNP denotes Borowiec
T11341 8446-8447 -LRB- denotes (
T11342 8447-8449 CD denotes 21
T11343 8449-8450 -RRB- denotes )
T11344 8450-8451 . denotes .
T11345 8451-8640 sentence denotes We propose that, only when both hexamers are activated by the interacting thymine-rich sequences present within the melted region, the Mcm helicase is mobilized and initiation takes place.
T11346 8452-8454 PRP denotes We
T11347 8455-8462 VBP denotes propose
T11348 8463-8467 IN denotes that
T11350 8467-8469 , denotes ,
T11351 8469-8473 RB denotes only
T11353 8474-8478 WRB denotes when
T11354 8479-8483 DT denotes both
T11355 8484-8492 NNS denotes hexamers
T11356 8493-8496 VBP denotes are
T11352 8497-8506 VBN denotes activated
T11357 8507-8509 IN denotes by
T11358 8510-8513 DT denotes the
T11360 8514-8525 VBG denotes interacting
T11361 8526-8533 NN denotes thymine
T11363 8533-8534 HYPH denotes -
T11362 8534-8538 JJ denotes rich
T11359 8539-8548 NNS denotes sequences
T11364 8549-8556 JJ denotes present
T11365 8557-8563 IN denotes within
T11366 8564-8567 DT denotes the
T11368 8568-8574 VBN denotes melted
T11367 8575-8581 NN denotes region
T11369 8581-8583 , denotes ,
T11370 8583-8586 DT denotes the
T11372 8587-8590 NN denotes Mcm
T11371 8591-8599 NN denotes helicase
T11373 8600-8602 VBZ denotes is
T11349 8603-8612 VBN denotes mobilized
T11374 8613-8616 CC denotes and
T11375 8617-8627 NN denotes initiation
T11376 8628-8633 VBZ denotes takes
T11377 8634-8639 NN denotes place
T11378 8639-8640 . denotes .
T11379 8640-8769 sentence denotes A crucial question is how these double hexameric helicase complexes are generated and turn into active helicases at the origins.
T11380 8641-8642 DT denotes A
T11382 8643-8650 JJ denotes crucial
T11381 8651-8659 NN denotes question
T11383 8660-8662 VBZ denotes is
T11384 8663-8666 WRB denotes how
T11386 8667-8672 DT denotes these
T11388 8673-8679 RB denotes double
T11389 8680-8689 JJ denotes hexameric
T11390 8690-8698 NN denotes helicase
T11387 8699-8708 NNS denotes complexes
T11391 8709-8712 VBP denotes are
T11385 8713-8722 VBN denotes generated
T11392 8723-8726 CC denotes and
T11393 8727-8731 VB denotes turn
T11394 8732-8736 IN denotes into
T11395 8737-8743 JJ denotes active
T11396 8744-8753 NNS denotes helicases
T11397 8754-8756 IN denotes at
T11398 8757-8760 DT denotes the
T11399 8761-8768 NNS denotes origins
T11400 8768-8769 . denotes .
T11401 8769-9023 sentence denotes This process would involve melting of duplex DNA, which may be facilitated by binding of preRC components in the context of proper chromatin structures, or by other unwinding factors including a topoisomerase or a newly identified Mcm8 helicase (34–36).
T11402 8770-8774 DT denotes This
T11403 8775-8782 NN denotes process
T11405 8783-8788 MD denotes would
T11404 8789-8796 VB denotes involve
T11406 8797-8804 NN denotes melting
T11407 8805-8807 IN denotes of
T11408 8808-8814 NN denotes duplex
T11409 8815-8818 NN denotes DNA
T11410 8818-8820 , denotes ,
T11411 8820-8825 WDT denotes which
T11413 8826-8829 MD denotes may
T11414 8830-8832 VB denotes be
T11412 8833-8844 VBN denotes facilitated
T11415 8845-8847 IN denotes by
T11416 8848-8855 NN denotes binding
T11417 8856-8858 IN denotes of
T11418 8859-8864 NN denotes preRC
T11419 8865-8875 NNS denotes components
T11420 8876-8878 IN denotes in
T11421 8879-8882 DT denotes the
T11422 8883-8890 NN denotes context
T11423 8891-8893 IN denotes of
T11424 8894-8900 JJ denotes proper
T11426 8901-8910 NN denotes chromatin
T11425 8911-8921 NNS denotes structures
T11427 8921-8923 , denotes ,
T11428 8923-8925 CC denotes or
T11429 8926-8928 IN denotes by
T11430 8929-8934 JJ denotes other
T11432 8935-8944 JJ denotes unwinding
T11431 8945-8952 NNS denotes factors
T11433 8953-8962 VBG denotes including
T11434 8963-8964 DT denotes a
T11435 8965-8978 NN denotes topoisomerase
T11436 8979-8981 CC denotes or
T11437 8982-8983 DT denotes a
T11439 8984-8989 RB denotes newly
T11440 8990-9000 VBN denotes identified
T11441 9001-9005 NN denotes Mcm8
T11438 9006-9014 NN denotes helicase
T11442 9015-9016 -LRB- denotes (
T11443 9016-9018 CD denotes 34
T11444 9018-9019 SYM denotes
T11445 9019-9021 CD denotes 36
T11446 9021-9022 -RRB- denotes )
T11447 9022-9023 . denotes .
T11448 9023-9171 sentence denotes It may also require association of fork-assisting proteins such as Cdc45 (37,38) as well as phosphorylation events by Cdk and Cdc7 kinases (39,40).
T11449 9024-9026 PRP denotes It
T11451 9027-9030 MD denotes may
T11452 9031-9035 RB denotes also
T11450 9036-9043 VB denotes require
T11453 9044-9055 NN denotes association
T11454 9056-9058 IN denotes of
T11455 9059-9063 NN denotes fork
T11457 9063-9064 HYPH denotes -
T11456 9064-9073 VBG denotes assisting
T11458 9074-9082 NN denotes proteins
T11459 9083-9087 JJ denotes such
T11460 9088-9090 IN denotes as
T11461 9091-9096 NN denotes Cdc45
T11462 9097-9098 -LRB- denotes (
T11464 9098-9100 CD denotes 37
T11465 9100-9101 , denotes ,
T11463 9101-9103 CD denotes 38
T11466 9103-9104 -RRB- denotes )
T11467 9105-9107 RB denotes as
T11469 9108-9112 RB denotes well
T11468 9113-9115 IN denotes as
T11470 9116-9131 NN denotes phosphorylation
T11471 9132-9138 NNS denotes events
T11472 9139-9141 IN denotes by
T11473 9142-9145 NN denotes Cdk
T11475 9146-9149 CC denotes and
T11476 9150-9154 NN denotes Cdc7
T11474 9155-9162 NNS denotes kinases
T11477 9163-9164 -LRB- denotes (
T11479 9164-9166 CD denotes 39
T11480 9166-9167 , denotes ,
T11478 9167-9169 CD denotes 40
T11481 9169-9170 -RRB- denotes )
T11482 9170-9171 . denotes .
T11483 9171-9268 sentence denotes One unexpected finding of this study is low helicase activity of Mcm4/6/7 on GC-rich duplex DNA.
T11484 9172-9175 CD denotes One
T11486 9176-9186 JJ denotes unexpected
T11485 9187-9194 NN denotes finding
T11488 9195-9197 IN denotes of
T11489 9198-9202 DT denotes this
T11490 9203-9208 NN denotes study
T11487 9209-9211 VBZ denotes is
T11491 9212-9215 JJ denotes low
T11493 9216-9224 NN denotes helicase
T11492 9225-9233 NN denotes activity
T11494 9234-9236 IN denotes of
T11495 9237-9241 NN denotes Mcm4
T11496 9241-9242 HYPH denotes /
T11497 9242-9243 CD denotes 6
T11498 9243-9244 HYPH denotes /
T11499 9244-9245 CD denotes 7
T11500 9246-9248 IN denotes on
T11501 9249-9251 NN denotes GC
T11503 9251-9252 HYPH denotes -
T11502 9252-9256 JJ denotes rich
T11505 9257-9263 NN denotes duplex
T11504 9264-9267 NN denotes DNA
T11506 9267-9268 . denotes .
T11507 9268-9453 sentence denotes This, in conjunction with the low processivity of Mcm4/6/7 helicase, strongly indicates that the replicative helicase at the replication forks would require more than Mcm4/6/7 complex.
T11508 9269-9273 DT denotes This
T11510 9273-9275 , denotes ,
T11511 9275-9277 IN denotes in
T11512 9278-9289 NN denotes conjunction
T11513 9290-9294 IN denotes with
T11514 9295-9298 DT denotes the
T11516 9299-9302 JJ denotes low
T11515 9303-9315 NN denotes processivity
T11517 9316-9318 IN denotes of
T11518 9319-9323 NN denotes Mcm4
T11520 9323-9324 HYPH denotes /
T11521 9324-9325 CD denotes 6
T11522 9325-9326 HYPH denotes /
T11523 9326-9327 CD denotes 7
T11519 9328-9336 NN denotes helicase
T11524 9336-9338 , denotes ,
T11525 9338-9346 RB denotes strongly
T11509 9347-9356 VBZ denotes indicates
T11526 9357-9361 IN denotes that
T11528 9362-9365 DT denotes the
T11530 9366-9377 JJ denotes replicative
T11529 9378-9386 NN denotes helicase
T11531 9387-9389 IN denotes at
T11532 9390-9393 DT denotes the
T11534 9394-9405 NN denotes replication
T11533 9406-9411 NNS denotes forks
T11535 9412-9417 MD denotes would
T11527 9418-9425 VB denotes require
T11536 9426-9430 JJR denotes more
T11537 9431-9435 IN denotes than
T11538 9436-9440 NN denotes Mcm4
T11540 9440-9441 HYPH denotes /
T11541 9441-9442 CD denotes 6
T11542 9442-9443 HYPH denotes /
T11543 9443-9444 CD denotes 7
T11539 9445-9452 NN denotes complex
T11544 9452-9453 . denotes .
T11545 9453-9792 sentence denotes During the processive unwinding of duplex DNA replication forks, Mcm4/6/7 may be further stimulated by interaction with other proteins, including remaining Mcm subunits, Cdc45 (37,38), GINS (41,42), DNA polymerase subunits (43), Mcm8 (35,36), etc. to become a truly processive and potent helicase capable of replicating the entire genome.
T11546 9454-9460 IN denotes During
T11548 9461-9464 DT denotes the
T11550 9465-9475 JJ denotes processive
T11549 9476-9485 NN denotes unwinding
T11551 9486-9488 IN denotes of
T11552 9489-9495 NN denotes duplex
T11554 9496-9499 NN denotes DNA
T11555 9500-9511 NN denotes replication
T11553 9512-9517 NNS denotes forks
T11556 9517-9519 , denotes ,
T11557 9519-9523 NN denotes Mcm4
T11558 9523-9524 HYPH denotes /
T11559 9524-9525 CD denotes 6
T11560 9525-9526 HYPH denotes /
T11561 9526-9527 CD denotes 7
T11562 9528-9531 MD denotes may
T11563 9532-9534 VB denotes be
T11564 9535-9542 RB denotes further
T11547 9543-9553 VBN denotes stimulated
T11565 9554-9556 IN denotes by
T11566 9557-9568 NN denotes interaction
T11567 9569-9573 IN denotes with
T11568 9574-9579 JJ denotes other
T11569 9580-9588 NN denotes proteins
T11570 9588-9590 , denotes ,
T11571 9590-9599 VBG denotes including
T11572 9600-9609 VBG denotes remaining
T11574 9610-9613 NN denotes Mcm
T11573 9614-9622 NNS denotes subunits
T11575 9622-9624 , denotes ,
T11576 9624-9629 NN denotes Cdc45
T11577 9630-9631 -LRB- denotes (
T11579 9631-9633 CD denotes 37
T11580 9633-9634 , denotes ,
T11578 9634-9636 CD denotes 38
T11581 9636-9637 -RRB- denotes )
T11582 9637-9639 , denotes ,
T11583 9639-9643 NN denotes GINS
T11584 9644-9645 -LRB- denotes (
T11586 9645-9647 CD denotes 41
T11587 9647-9648 , denotes ,
T11585 9648-9650 CD denotes 42
T11588 9650-9651 -RRB- denotes )
T11589 9651-9653 , denotes ,
T11590 9653-9656 NN denotes DNA
T11592 9657-9667 NN denotes polymerase
T11591 9668-9676 NNS denotes subunits
T11593 9677-9678 -LRB- denotes (
T11594 9678-9680 CD denotes 43
T11595 9680-9681 -RRB- denotes )
T11596 9681-9683 , denotes ,
T11597 9683-9687 NN denotes Mcm8
T11598 9688-9689 -LRB- denotes (
T11600 9689-9691 CD denotes 35
T11601 9691-9692 , denotes ,
T11599 9692-9694 CD denotes 36
T11602 9694-9695 -RRB- denotes )
T11603 9695-9697 , denotes ,
T11604 9697-9701 FW denotes etc.
T11605 9702-9704 TO denotes to
T11606 9705-9711 VB denotes become
T11607 9712-9713 DT denotes a
T11609 9714-9719 RB denotes truly
T11610 9720-9730 JJ denotes processive
T11611 9731-9734 CC denotes and
T11612 9735-9741 JJ denotes potent
T11608 9742-9750 NN denotes helicase
T11613 9751-9758 JJ denotes capable
T11614 9759-9761 IN denotes of
T11615 9762-9773 VBG denotes replicating
T11616 9774-9777 DT denotes the
T11618 9778-9784 JJ denotes entire
T11617 9785-9791 NN denotes genome
T11619 9791-9792 . denotes .
R5896 T8790 T8791 compound DNA,helicase
R5897 T8791 T8792 nsubj helicase,is
R5898 T8793 T8794 det a,factor
R5899 T8794 T8792 attr factor,is
R5900 T8795 T8794 amod central,factor
R5901 T8796 T8794 prep for,factor
R5902 T8797 T8796 pobj operation,for
R5903 T8798 T8797 prep of,operation
R5904 T8799 T8800 compound replication,forks
R5905 T8800 T8798 pobj forks,of
R5906 T8801 T8792 punct .,is
R5907 T8803 T8804 nsubj It,plays
R5908 T8805 T8804 advmod also,plays
R5909 T8806 T8807 det a,role
R5910 T8807 T8804 dobj role,plays
R5911 T8808 T8807 amod crucial,role
R5912 T8809 T8804 prep in,plays
R5913 T8810 T8811 det the,step
R5914 T8811 T8809 pobj step,in
R5915 T8812 T8811 compound initiation,step
R5916 T8813 T8804 prep at,plays
R5917 T8814 T8815 det the,origins
R5918 T8815 T8813 pobj origins,at
R5919 T8816 T8815 compound replication,origins
R5920 T8817 T8804 punct .,plays
R5921 T8819 T8820 advmod Therefore,is
R5922 T8821 T8820 punct ", ",is
R5923 T8822 T8823 det the,elucidation
R5924 T8823 T8820 nsubj elucidation,is
R5925 T8824 T8823 prep of,elucidation
R5926 T8825 T8826 advmod how,interact
R5927 T8826 T8824 pobj interact,of
R5928 T8827 T8828 det the,helicases
R5929 T8828 T8826 nsubj helicases,interact
R5930 T8829 T8828 amod replicative,helicases
R5931 T8830 T8826 prep with,interact
R5932 T8831 T8832 compound DNA,substrate
R5933 T8832 T8830 pobj substrate,with
R5934 T8833 T8826 cc and,interact
R5935 T8834 T8835 advmod how,activated
R5936 T8835 T8826 conj activated,interact
R5937 T8836 T8835 nsubjpass they,activated
R5938 T8837 T8835 auxpass are,activated
R5939 T8838 T8820 acomp crucial,is
R5940 T8839 T8838 prep for,crucial
R5941 T8840 T8839 pcomp understanding,for
R5942 T8841 T8842 det the,basis
R5943 T8842 T8840 dobj basis,understanding
R5944 T8843 T8842 amod molecular,basis
R5945 T8844 T8842 prep of,basis
R5946 T8845 T8844 pobj initiation,of
R5947 T8846 T8845 prep of,initiation
R5948 T8847 T8848 compound DNA,replication
R5949 T8848 T8846 pobj replication,of
R5950 T8849 T8820 punct .,is
R5951 T8851 T8852 nsubjpass It,believed
R5952 T8853 T8852 auxpass is,believed
R5953 T8854 T8852 advmod now,believed
R5954 T8855 T8856 mark that,is
R5955 T8856 T8852 ccomp is,believed
R5956 T8857 T8856 nsubj Mcm,is
R5957 T8858 T8859 det a,component
R5958 T8859 T8856 attr component,is
R5959 T8860 T8859 amod major,component
R5960 T8861 T8859 prep of,component
R5961 T8862 T8863 det the,helicase
R5962 T8863 T8861 pobj helicase,of
R5963 T8864 T8863 amod eukaryotic,helicase
R5964 T8865 T8863 amod replicative,helicase
R5965 T8866 T8852 punct .,believed
R5966 T8868 T8869 prep In,conducted
R5967 T8870 T8871 det this,report
R5968 T8871 T8868 pobj report,In
R5969 T8872 T8869 punct ", ",conducted
R5970 T8873 T8869 nsubj we,conducted
R5971 T8874 T8869 aux have,conducted
R5972 T8875 T8876 amod detailed,analyses
R5973 T8876 T8869 dobj analyses,conducted
R5974 T8877 T8876 prep on,analyses
R5975 T8878 T8879 nmod binding,actions
R5976 T8879 T8877 pobj actions,on
R5977 T8880 T8878 cc and,binding
R5978 T8881 T8878 conj helicase,binding
R5979 T8882 T8879 prep of,actions
R5980 T8883 T8884 compound mouse,Mcm4
R5981 T8884 T8882 pobj Mcm4,of
R5982 T8885 T8884 punct /,Mcm4
R5983 T8886 T8884 nummod 6,Mcm4
R5984 T8887 T8884 punct /,Mcm4
R5985 T8888 T8884 nummod 7,Mcm4
R5986 T8889 T8869 advcl using,conducted
R5987 T8890 T8891 amod various,substrates
R5988 T8891 T8889 dobj substrates,using
R5989 T8892 T8891 prep including,substrates
R5990 T8893 T8894 nmod fork,structures
R5991 T8894 T8892 pobj structures,including
R5992 T8895 T8893 cc and,fork
R5993 T8896 T8893 conj bubble,fork
R5994 T8897 T8869 punct .,conducted
R5997 T9089 T9088 prep of,Modes
R5998 T9090 T9089 pobj binding,of
R5999 T9091 T9090 cc and,binding
R6000 T9092 T9090 conj activation,binding
R6001 T9093 T9090 prep of,binding
R6002 T9094 T9095 nmod Mcm4,helicase
R6003 T9095 T9093 pobj helicase,of
R6004 T9096 T9094 punct /,Mcm4
R6005 T9097 T9094 nummod 6,Mcm4
R6006 T9098 T9094 punct /,Mcm4
R6007 T9099 T9094 nummod 7,Mcm4
R6008 T9100 T9090 prep on,binding
R6009 T9101 T9102 det a,structure
R6010 T9102 T9100 pobj structure,on
R6011 T9103 T9102 compound bubble,structure
R6012 T9105 T9106 nsubjpass Initiation,associated
R6013 T9107 T9105 prep of,Initiation
R6014 T9108 T9109 compound DNA,replication
R6015 T9109 T9107 pobj replication,of
R6016 T9110 T9106 auxpass is,associated
R6017 T9111 T9106 prep with,associated
R6018 T9112 T9113 amod localized,melting
R6019 T9113 T9111 pobj melting,with
R6020 T9114 T9113 prep of,melting
R6021 T9115 T9116 compound duplex,DNA
R6022 T9116 T9114 pobj DNA,of
R6023 T9117 T9113 amod near,melting
R6024 T9118 T9119 compound replication,origins
R6025 T9119 T9117 npadvmod origins,near
R6026 T9120 T9106 punct .,associated
R6027 T9122 T9123 nsubjpass Helicases,loaded
R6028 T9124 T9123 auxpass are,loaded
R6029 T9125 T9123 prep onto,loaded
R6030 T9126 T9127 compound replication,forks
R6031 T9127 T9125 pobj forks,onto
R6032 T9128 T9123 prep through,loaded
R6033 T9129 T9130 det the,region
R6034 T9130 T9128 pobj region,through
R6035 T9131 T9130 amod melted,region
R6036 T9132 T9130 punct ", ",region
R6037 T9133 T9130 acl induced,region
R6038 T9134 T9133 prep by,induced
R6039 T9135 T9136 compound initiator,binding
R6040 T9136 T9134 pobj binding,by
R6041 T9137 T9123 punct ", ",loaded
R6042 T9138 T9123 prep in,loaded
R6043 T9139 T9138 pobj bacteria,in
R6044 T9140 T9141 punct (,32
R6045 T9141 T9123 parataxis 32,loaded
R6046 T9142 T9141 punct ),32
R6047 T9143 T9123 punct .,loaded
R6048 T9145 T9146 nsubj We,reported
R6049 T9147 T9146 advmod previously,reported
R6050 T9148 T9149 mark that,loaded
R6051 T9149 T9146 ccomp loaded,reported
R6052 T9150 T9149 nsubjpass Mcm4,loaded
R6053 T9151 T9150 punct /,Mcm4
R6054 T9152 T9150 nummod 6,Mcm4
R6055 T9153 T9150 punct /,Mcm4
R6056 T9154 T9150 nummod 7,Mcm4
R6057 T9155 T9149 aux can,loaded
R6058 T9156 T9149 auxpass be,loaded
R6059 T9157 T9149 prep onto,loaded
R6060 T9158 T9159 det a,structure
R6061 T9159 T9157 pobj structure,onto
R6062 T9160 T9161 npadvmod bubble,like
R6063 T9161 T9159 amod like,structure
R6064 T9162 T9161 punct -,like
R6065 T9163 T9146 cc and,reported
R6066 T9164 T9165 aux can,serve
R6067 T9165 T9146 conj serve,reported
R6068 T9166 T9165 prep as,serve
R6069 T9167 T9168 det a,helicase
R6070 T9168 T9166 pobj helicase,as
R6071 T9169 T9168 compound DNA,helicase
R6072 T9170 T9165 prep at,serve
R6073 T9171 T9172 det the,forks
R6074 T9172 T9170 pobj forks,at
R6075 T9173 T9174 punct (,13
R6076 T9174 T9165 parataxis 13,serve
R6077 T9175 T9174 punct ),13
R6078 T9176 T9146 punct .,reported
R6079 T9178 T9179 det The,ability
R6080 T9179 T9180 nsubj ability,indicates
R6081 T9181 T9179 prep of,ability
R6082 T9182 T9181 pobj Mcm4,of
R6083 T9183 T9182 punct /,Mcm4
R6084 T9184 T9182 nummod 6,Mcm4
R6085 T9185 T9182 punct /,Mcm4
R6086 T9186 T9182 nummod 7,Mcm4
R6087 T9187 T9188 aux to,unwind
R6088 T9188 T9179 acl unwind,ability
R6089 T9189 T9190 det the,substrate
R6090 T9190 T9188 dobj substrate,unwind
R6091 T9191 T9190 compound bubble,substrate
R6092 T9192 T9190 cc but,substrate
R6093 T9193 T9192 neg not,but
R6094 T9194 T9195 det the,DNA
R6095 T9195 T9190 conj DNA,substrate
R6096 T9196 T9195 amod conventional,DNA
R6097 T9197 T9195 compound duplex,DNA
R6098 T9198 T9199 punct (,2
R6099 T9199 T9188 parataxis 2,unwind
R6100 T9200 T9199 nmod Figures,2
R6101 T9201 T9199 cc and,2
R6102 T9202 T9199 conj 13,2
R6103 T9203 T9199 punct ),2
R6104 T9204 T9205 mark that,loaded
R6105 T9205 T9180 ccomp loaded,indicates
R6106 T9206 T9205 nsubjpass Mcm,loaded
R6107 T9207 T9205 aux can,loaded
R6108 T9208 T9205 auxpass be,loaded
R6109 T9209 T9205 prep through,loaded
R6110 T9210 T9211 det the,segment
R6111 T9211 T9209 pobj segment,through
R6112 T9212 T9213 amod single,stranded
R6113 T9213 T9211 amod stranded,segment
R6114 T9214 T9213 punct -,stranded
R6115 T9215 T9211 prep of,segment
R6116 T9216 T9217 det the,bubble
R6117 T9217 T9215 pobj bubble,of
R6118 T9218 T9180 punct .,indicates
R6119 T9220 T9221 advmod Furthermore,displays
R6120 T9222 T9221 punct ", ",displays
R6121 T9223 T9224 det the,complex
R6122 T9224 T9221 nsubj complex,displays
R6123 T9225 T9224 nmod Mcm4,complex
R6124 T9226 T9225 punct /,Mcm4
R6125 T9227 T9225 nummod 6,Mcm4
R6126 T9228 T9225 punct /,Mcm4
R6127 T9229 T9225 nummod 7,Mcm4
R6128 T9230 T9231 amod marked,preference
R6129 T9231 T9221 dobj preference,displays
R6130 T9232 T9231 prep for,preference
R6131 T9233 T9234 npadvmod thymine,rich
R6132 T9234 T9236 amod rich,sequences
R6133 T9235 T9234 punct -,rich
R6134 T9236 T9232 pobj sequences,for
R6135 T9237 T9221 prep within,displays
R6136 T9238 T9239 det the,segment
R6137 T9239 T9237 pobj segment,within
R6138 T9240 T9241 amod single,stranded
R6139 T9241 T9239 amod stranded,segment
R6140 T9242 T9241 punct -,stranded
R6141 T9243 T9239 prep for,segment
R6142 T9244 T9245 compound helicase,activation
R6143 T9245 T9243 pobj activation,for
R6144 T9246 T9247 punct (,13
R6145 T9247 T9221 parataxis 13,displays
R6146 T9248 T9247 punct ),13
R6147 T9249 T9221 punct .,displays
R6148 T9251 T9252 det The,results
R6149 T9252 T9253 nsubj results,indicate
R6150 T9254 T9252 prep in,results
R6151 T9255 T9256 det this,report
R6152 T9256 T9254 pobj report,in
R6153 T9257 T9258 mark that,depend
R6154 T9258 T9253 ccomp depend,indicate
R6155 T9259 T9260 compound helicase,action
R6156 T9260 T9258 nsubj action,depend
R6157 T9261 T9260 prep of,action
R6158 T9262 T9261 pobj Mcm4,of
R6159 T9263 T9262 punct /,Mcm4
R6160 T9264 T9262 nummod 6,Mcm4
R6161 T9265 T9262 punct /,Mcm4
R6162 T9266 T9262 nummod 7,Mcm4
R6163 T9267 T9260 prep on,action
R6164 T9268 T9269 amod synthetic,bubbles
R6165 T9269 T9267 pobj bubbles,on
R6166 T9270 T9258 aux may,depend
R6167 T9271 T9258 prep on,depend
R6168 T9272 T9273 det the,presence
R6169 T9273 T9271 pobj presence,on
R6170 T9274 T9273 prep of,presence
R6171 T9275 T9276 det an,region
R6172 T9276 T9274 pobj region,of
R6173 T9277 T9276 amod unpaired,region
R6174 T9278 T9276 prep of,region
R6175 T9279 T9280 amod sufficient,length
R6176 T9280 T9278 pobj length,of
R6177 T9281 T9282 punct (,nt
R6178 T9282 T9280 parataxis nt,length
R6179 T9283 T9284 advmod at,least
R6180 T9284 T9285 advmod least,40
R6181 T9285 T9282 nummod 40,nt
R6182 T9286 T9282 punct ),nt
R6183 T9287 T9276 punct ", ",region
R6184 T9288 T9289 dep which,permit
R6185 T9289 T9276 relcl permit,region
R6186 T9290 T9289 aux may,permit
R6187 T9291 T9289 dobj assembly,permit
R6188 T9292 T9291 prep of,assembly
R6189 T9293 T9294 det a,complex
R6190 T9294 T9292 pobj complex,of
R6191 T9295 T9296 amod double,hexameric
R6192 T9296 T9294 amod hexameric,complex
R6193 T9297 T9296 punct -,hexameric
R6194 T9298 T9294 prep on,complex
R6195 T9299 T9300 det the,DNA
R6196 T9300 T9298 pobj DNA,on
R6197 T9301 T9300 compound substrate,DNA
R6198 T9302 T9294 punct ", ",complex
R6199 T9303 T9294 amod similar,complex
R6200 T9304 T9303 prep to,similar
R6201 T9305 T9306 compound SV40,protein
R6202 T9306 T9304 pobj protein,to
R6203 T9307 T9308 compound T,antigen
R6204 T9308 T9306 compound antigen,protein
R6205 T9309 T9308 punct -,antigen
R6206 T9310 T9311 punct (,2A
R6207 T9311 T9304 parataxis 2A,to
R6208 T9312 T9311 compound Figure,2A
R6209 T9313 T9311 punct ),2A
R6210 T9314 T9315 punct (,21
R6211 T9315 T9289 parataxis 21,permit
R6212 T9316 T9315 punct ),21
R6213 T9317 T9253 punct .,indicate
R6214 T9319 T9320 advmod When,replaced
R6215 T9320 T9335 advcl replaced,reduced
R6216 T9321 T9322 nummod one,strand
R6217 T9322 T9320 nsubjpass strand,replaced
R6218 T9323 T9322 prep of,strand
R6219 T9324 T9325 det the,segment
R6220 T9325 T9323 pobj segment,of
R6221 T9326 T9327 amod single,stranded
R6222 T9327 T9325 amod stranded,segment
R6223 T9328 T9327 punct -,stranded
R6224 T9329 T9322 prep in,strand
R6225 T9330 T9331 npadvmod T,rich
R6226 T9331 T9333 amod rich,bubble
R6227 T9332 T9331 punct -,rich
R6228 T9333 T9329 pobj bubble,in
R6229 T9334 T9320 auxpass was,replaced
R6230 T9336 T9320 agent by,replaced
R6231 T9337 T9338 npadvmod guanine,rich
R6232 T9338 T9340 amod rich,sequences
R6233 T9339 T9338 punct -,rich
R6234 T9340 T9336 pobj sequences,by
R6235 T9341 T9335 punct ", ",reduced
R6236 T9342 T9343 det the,efficiency
R6237 T9343 T9335 nsubjpass efficiency,reduced
R6238 T9344 T9343 prep of,efficiency
R6239 T9345 T9344 pobj unwinding,of
R6240 T9346 T9335 auxpass was,reduced
R6241 T9347 T9335 advmod significantly,reduced
R6242 T9348 T9335 punct .,reduced
R6243 T9350 T9351 poss Our,analyses
R6244 T9351 T9353 nsubj analyses,showed
R6245 T9352 T9351 compound footprinting,analyses
R6246 T9354 T9355 mark that,protects
R6247 T9355 T9353 ccomp protects,showed
R6248 T9356 T9355 nsubj Mcm4,protects
R6249 T9357 T9356 punct /,Mcm4
R6250 T9358 T9356 nummod 6,Mcm4
R6251 T9359 T9356 punct /,Mcm4
R6252 T9360 T9356 nummod 7,Mcm4
R6253 T9361 T9355 advmod strongly,protects
R6254 T9362 T9363 nummod 25,nt
R6255 T9363 T9364 nmod nt,segment
R6256 T9364 T9355 dobj segment,protects
R6257 T9365 T9366 amod single,stranded
R6258 T9366 T9364 amod stranded,segment
R6259 T9367 T9366 punct -,stranded
R6260 T9368 T9364 compound DNA,segment
R6261 T9369 T9364 amod adjacent,segment
R6262 T9370 T9369 prep to,adjacent
R6263 T9371 T9372 det each,point
R6264 T9372 T9370 pobj point,to
R6265 T9373 T9372 compound branch,point
R6266 T9374 T9369 cc and,adjacent
R6267 T9375 T9369 conj proximal,adjacent
R6268 T9376 T9375 prep to,proximal
R6269 T9377 T9378 nummod 5,ends
R6270 T9378 T9376 pobj ends,to
R6271 T9379 T9377 punct ′,5
R6272 T9380 T9378 prep of,ends
R6273 T9381 T9382 det both,strands
R6274 T9382 T9380 pobj strands,of
R6275 T9383 T9382 prep of,strands
R6276 T9384 T9385 det the,bubble
R6277 T9385 T9383 pobj bubble,of
R6278 T9386 T9353 punct .,showed
R6279 T9388 T9389 prep At,is
R6280 T9390 T9391 det each,fork
R6281 T9391 T9388 pobj fork,At
R6282 T9392 T9389 punct ", ",is
R6283 T9393 T9394 nummod one,complex
R6284 T9394 T9389 nsubj complex,is
R6285 T9395 T9394 nmod Mcm4,complex
R6286 T9396 T9395 punct /,Mcm4
R6287 T9397 T9395 nummod 6,Mcm4
R6288 T9398 T9395 punct /,Mcm4
R6289 T9399 T9395 nummod 7,Mcm4
R6290 T9400 T9389 acomp likely,is
R6291 T9401 T9402 aux to,encircle
R6292 T9402 T9400 xcomp encircle,likely
R6293 T9403 T9404 det the,strand
R6294 T9404 T9402 dobj strand,encircle
R6295 T9405 T9406 amod single,stranded
R6296 T9406 T9404 amod stranded,strand
R6297 T9407 T9406 punct -,stranded
R6298 T9408 T9404 compound DNA,strand
R6299 T9409 T9389 cc and,is
R6300 T9410 T9411 nummod two,hexamers
R6301 T9411 T9412 nsubj hexamers,bind
R6302 T9412 T9389 conj bind,is
R6303 T9413 T9412 aux may,bind
R6304 T9414 T9412 advmod symmetrically,bind
R6305 T9415 T9412 prep to,bind
R6306 T9416 T9417 det the,substrate
R6307 T9417 T9415 pobj substrate,to
R6308 T9418 T9417 compound bubble,substrate
R6309 T9419 T9412 punct ", ",bind
R6310 T9420 T9412 advcl forming,bind
R6311 T9421 T9422 det a,structure
R6312 T9422 T9420 dobj structure,forming
R6313 T9423 T9424 amod double,hexameric
R6314 T9424 T9422 amod hexameric,structure
R6315 T9425 T9420 prep on,forming
R6316 T9426 T9427 det the,bubble
R6317 T9427 T9425 pobj bubble,on
R6318 T9428 T9429 punct (,see
R6319 T9429 T9420 parataxis see,forming
R6320 T9430 T9431 amod schematic,drawing
R6321 T9431 T9429 dobj drawing,see
R6322 T9432 T9431 prep of,drawing
R6323 T9433 T9434 compound Figure,1A
R6324 T9434 T9432 pobj 1A,of
R6325 T9435 T9429 punct ),see
R6326 T9436 T9412 punct .,bind
R6327 T9438 T9439 amod Efficient,unwinding
R6328 T9439 T9440 nsubj unwinding,require
R6329 T9441 T9439 prep into,unwinding
R6330 T9442 T9443 det both,directions
R6331 T9443 T9441 pobj directions,into
R6332 T9444 T9440 aux may,require
R6333 T9445 T9446 amod simultaneous,activation
R6334 T9446 T9440 dobj activation,require
R6335 T9447 T9446 prep of,activation
R6336 T9448 T9449 det both,hexamers
R6337 T9449 T9447 pobj hexamers,of
R6338 T9450 T9451 dep which,sit
R6339 T9451 T9449 relcl sit,hexamers
R6340 T9452 T9451 aux may,sit
R6341 T9453 T9451 prep at,sit
R6342 T9454 T9455 det the,center
R6343 T9455 T9453 pobj center,at
R6344 T9456 T9457 mark while,extruding
R6345 T9457 T9451 advcl extruding,sit
R6346 T9458 T9459 det the,DNA
R6347 T9459 T9457 dobj DNA,extruding
R6348 T9460 T9459 amod unwound,DNA
R6349 T9461 T9462 amod single,stranded
R6350 T9462 T9459 amod stranded,DNA
R6351 T9463 T9462 punct -,stranded
R6352 T9464 T9457 prep through,extruding
R6353 T9465 T9466 det the,rings
R6354 T9466 T9464 pobj rings,through
R6355 T9467 T9440 punct .,require
R6356 T9469 T9470 nsubj This,resemble
R6357 T9471 T9470 aux may,resemble
R6358 T9472 T9470 advmod closely,resemble
R6359 T9473 T9474 det the,modes
R6360 T9474 T9470 dobj modes,resemble
R6361 T9475 T9474 amod proposed,modes
R6362 T9476 T9474 prep of,modes
R6363 T9477 T9478 nmod binding,actions
R6364 T9478 T9476 pobj actions,of
R6365 T9479 T9477 cc and,binding
R6366 T9480 T9477 conj helicase,binding
R6367 T9481 T9478 prep of,actions
R6368 T9482 T9483 compound T,antigen
R6369 T9483 T9481 pobj antigen,of
R6370 T9484 T9483 punct -,antigen
R6371 T9485 T9486 punct (,21
R6372 T9486 T9470 parataxis 21,resemble
R6373 T9487 T9486 punct ),21
R6374 T9488 T9470 punct .,resemble
R6375 T9490 T9491 mark Although,exclude
R6376 T9491 T9496 advcl exclude,bear
R6377 T9492 T9491 nsubj we,exclude
R6378 T9493 T9491 aux can,exclude
R6379 T9494 T9491 neg not,exclude
R6380 T9495 T9491 advmod totally,exclude
R6381 T9497 T9498 det the,possibility
R6382 T9498 T9491 dobj possibility,exclude
R6383 T9499 T9500 mark that,unwinds
R6384 T9500 T9498 acl unwinds,possibility
R6385 T9501 T9502 nummod one,hexamer
R6386 T9502 T9500 nsubj hexamer,unwinds
R6387 T9503 T9502 nmod Mcm4,hexamer
R6388 T9504 T9503 punct /,Mcm4
R6389 T9505 T9503 nummod 6,Mcm4
R6390 T9506 T9503 punct /,Mcm4
R6391 T9507 T9503 nummod 7,Mcm4
R6392 T9508 T9502 prep at,hexamer
R6393 T9509 T9510 det each,fork
R6394 T9510 T9508 pobj fork,at
R6395 T9511 T9512 det the,duplex
R6396 T9512 T9500 dobj duplex,unwinds
R6397 T9513 T9500 advmod independently,unwinds
R6398 T9514 T9496 punct ", ",bear
R6399 T9515 T9516 npadvmod ring,shaped
R6400 T9516 T9518 amod shaped,structures
R6401 T9517 T9516 punct -,shaped
R6402 T9518 T9496 nsubj structures,bear
R6403 T9519 T9518 prep of,structures
R6404 T9520 T9521 nmod mouse,MCM
R6405 T9521 T9519 pobj MCM,of
R6406 T9522 T9520 cc and,mouse
R6407 T9523 T9520 conj archea,mouse
R6408 T9524 T9496 punct ", ",bear
R6409 T9525 T9526 mark as,revealed
R6410 T9526 T9496 advcl revealed,bear
R6411 T9527 T9526 agent by,revealed
R6412 T9528 T9529 compound electron,microscopy
R6413 T9529 T9527 pobj microscopy,by
R6414 T9530 T9496 punct ", ",bear
R6415 T9531 T9532 amod much,similarity
R6416 T9532 T9496 dobj similarity,bear
R6417 T9533 T9532 prep to,similarity
R6418 T9534 T9535 det the,structure
R6419 T9535 T9533 pobj structure,to
R6420 T9536 T9537 advmod recently,solved
R6421 T9537 T9535 amod solved,structure
R6422 T9538 T9535 prep of,structure
R6423 T9539 T9540 det the,antigen
R6424 T9540 T9538 pobj antigen,of
R6425 T9541 T9540 nmod SV40,antigen
R6426 T9542 T9540 amod large,antigen
R6427 T9543 T9540 compound T,antigen
R6428 T9544 T9540 punct -,antigen
R6429 T9545 T9546 punct (,6
R6430 T9546 T9535 parataxis 6,structure
R6431 T9547 T9546 nummod 4,6
R6432 T9548 T9546 punct ",",6
R6433 T9549 T9546 punct ),6
R6434 T9550 T9496 punct ", ",bear
R6435 T9551 T9496 cc and,bear
R6436 T9552 T9496 conj are,bear
R6437 T9553 T9552 prep in,are
R6438 T9554 T9553 pobj favor,in
R6439 T9555 T9554 prep of,favor
R6440 T9556 T9557 det the,structure
R6441 T9557 T9555 pobj structure,of
R6442 T9558 T9559 amod double,hexameric
R6443 T9559 T9557 amod hexameric,structure
R6444 T9560 T9559 punct -,hexameric
R6445 T9561 T9557 prep of,structure
R6446 T9562 T9563 compound mouse,Mcm
R6447 T9563 T9561 pobj Mcm,of
R6448 T9564 T9557 prep on,structure
R6449 T9565 T9566 det a,DNA
R6450 T9566 T9564 pobj DNA,on
R6451 T9567 T9566 compound bubble,DNA
R6452 T9568 T9496 punct .,bear
R6455 T9856 T9857 nmod Substrate,requirement
R6456 T9858 T9856 cc and,Substrate
R6457 T9859 T9856 conj sequence,Substrate
R6458 T9860 T9857 prep for,requirement
R6459 T9861 T9862 nmod Mcm4,activation
R6460 T9862 T9860 pobj activation,for
R6461 T9863 T9861 punct /,Mcm4
R6462 T9864 T9861 nummod 6,Mcm4
R6463 T9865 T9861 punct /,Mcm4
R6464 T9866 T9861 nummod 7,Mcm4
R6465 T9867 T9862 compound helicase,activation
R6466 T9869 T9870 compound DNA,binding
R6467 T9870 T9871 compound binding,assays
R6468 T9871 T9872 nsubj assays,indicate
R6469 T9873 T9874 mark that,binds
R6470 T9874 T9872 ccomp binds,indicate
R6471 T9875 T9874 nsubj Mcm4,binds
R6472 T9876 T9875 punct /,Mcm4
R6473 T9877 T9875 nummod 6,Mcm4
R6474 T9878 T9875 punct /,Mcm4
R6475 T9879 T9875 nummod 7,Mcm4
R6476 T9880 T9874 prep to,binds
R6477 T9881 T9882 det those,substrates
R6478 T9882 T9880 pobj substrates,to
R6479 T9883 T9882 acl containing,substrates
R6480 T9884 T9885 amod single,stranded
R6481 T9885 T9887 amod stranded,regions
R6482 T9886 T9885 punct -,stranded
R6483 T9887 T9883 dobj regions,containing
R6484 T9888 T9887 compound DNA,regions
R6485 T9889 T9874 advmod regardless,binds
R6486 T9890 T9889 prep of,regardless
R6487 T9891 T9892 det the,presence
R6488 T9892 T9890 pobj presence,of
R6489 T9893 T9892 cc or,presence
R6490 T9894 T9892 conj absence,presence
R6491 T9895 T9892 prep of,presence
R6492 T9896 T9897 amod single,stranded
R6493 T9897 T9899 amod stranded,end
R6494 T9898 T9897 punct -,stranded
R6495 T9899 T9895 pobj end,of
R6496 T9900 T9899 nummod 3,end
R6497 T9901 T9900 punct ′,3
R6498 T9902 T9900 cc or,3
R6499 T9903 T9900 conj 5,3
R6500 T9904 T9903 punct ′,5
R6501 T9905 T9872 punct .,indicate
R6502 T9907 T9908 nsubj Unwinding,depends
R6503 T9909 T9907 prep of,Unwinding
R6504 T9910 T9911 det the,DNA
R6505 T9911 T9909 pobj DNA,of
R6506 T9912 T9911 compound duplex,DNA
R6507 T9913 T9908 prep on,depends
R6508 T9914 T9913 pobj translocation,on
R6509 T9915 T9914 prep of,translocation
R6510 T9916 T9917 amod single,stranded
R6511 T9917 T9919 amod stranded,DNA
R6512 T9918 T9917 punct -,stranded
R6513 T9919 T9915 pobj DNA,of
R6514 T9920 T9914 prep from,translocation
R6515 T9921 T9920 pobj 3,from
R6516 T9922 T9921 punct ′,3
R6517 T9923 T9920 prep to,from
R6518 T9924 T9923 pobj 5,to
R6519 T9925 T9924 punct ′,5
R6520 T9926 T9920 pobj direction,from
R6521 T9927 T9908 punct .,depends
R6522 T9929 T9930 nsubjpass This,shown
R6523 T9931 T9930 auxpass is,shown
R6524 T9932 T9933 advmod most,clearly
R6525 T9933 T9930 advmod clearly,shown
R6526 T9934 T9930 prep by,shown
R6527 T9935 T9936 poss its,action
R6528 T9936 T9934 pobj action,by
R6529 T9937 T9936 compound helicase,action
R6530 T9938 T9936 prep on,action
R6531 T9939 T9940 nmod A,fork
R6532 T9940 T9942 nmod fork,extension
R6533 T9941 T9940 punct -,fork
R6534 T9942 T9938 pobj extension,on
R6535 T9943 T9940 punct [,fork
R6536 T9944 T9940 appos 5,fork
R6537 T9945 T9944 punct ′,5
R6538 T9946 T9944 punct ],5
R6539 T9947 T9944 cc and,5
R6540 T9948 T9944 conj 3,5
R6541 T9949 T9948 punct ′,3
R6542 T9950 T9942 punct -,extension
R6543 T9951 T9938 cc but,on
R6544 T9952 T9951 neg not,but
R6545 T9953 T9938 conj on,on
R6546 T9954 T9955 nmod A,fork
R6547 T9955 T9957 nmod fork,extension
R6548 T9956 T9955 punct -,fork
R6549 T9957 T9953 pobj extension,on
R6550 T9958 T9955 punct [,fork
R6551 T9959 T9955 nummod 3,fork
R6552 T9960 T9955 punct ′,fork
R6553 T9961 T9955 punct ],fork
R6554 T9962 T9955 punct ", ",fork
R6555 T9963 T9964 compound A,fork
R6556 T9964 T9955 conj fork,fork
R6557 T9965 T9964 punct -,fork
R6558 T9966 T9964 punct [,fork
R6559 T9967 T9964 appos 3,fork
R6560 T9968 T9967 punct ′,3
R6561 T9969 T9967 punct ",",3
R6562 T9970 T9967 appos 5,3
R6563 T9971 T9970 punct ′,5
R6564 T9972 T9964 punct ],fork
R6565 T9973 T9964 cc nor,fork
R6566 T9974 T9964 conj 5,fork
R6567 T9975 T9974 punct ′,5
R6568 T9976 T9957 punct -,extension
R6569 T9977 T9930 punct .,shown
R6570 T9979 T9980 advmod However,require
R6571 T9981 T9980 punct ", ",require
R6572 T9982 T9980 nsubj it,require
R6573 T9983 T9980 aux does,require
R6574 T9984 T9980 neg not,require
R6575 T9985 T9980 advmod necessarily,require
R6576 T9986 T9987 nummod 3,end
R6577 T9987 T9980 dobj end,require
R6578 T9988 T9986 punct ′,3
R6579 T9989 T9987 prep of,end
R6580 T9990 T9991 amod single,stranded
R6581 T9991 T9993 amod stranded,DNA
R6582 T9992 T9991 punct -,stranded
R6583 T9993 T9989 pobj DNA,of
R6584 T9994 T9980 punct ", ",require
R6585 T9995 T9996 mark since,displace
R6586 T9996 T9980 advcl displace,require
R6587 T9997 T9996 nsubj Mcm4,displace
R6588 T9998 T9997 punct /,Mcm4
R6589 T9999 T9997 nummod 6,Mcm4
R6590 T10000 T9997 punct /,Mcm4
R6591 T10001 T9997 nummod 7,Mcm4
R6592 T10002 T9996 aux can,displace
R6593 T10003 T10004 amod annealing,oligonucleotide
R6594 T10004 T9996 dobj oligonucleotide,displace
R6595 T10005 T9996 prep on,displace
R6596 T10006 T10007 det a,DNA
R6597 T10007 T10005 pobj DNA,on
R6598 T10008 T10007 amod circular,DNA
R6599 T10009 T10010 amod single,stranded
R6600 T10010 T10007 amod stranded,DNA
R6601 T10011 T10010 punct -,stranded
R6602 T10012 T9980 punct .,require
R6603 T10014 T10015 det The,ability
R6604 T10015 T10016 nsubjpass ability,shared
R6605 T10017 T10015 prep of,ability
R6606 T10018 T10019 det the,Mcm4
R6607 T10019 T10017 pobj Mcm4,of
R6608 T10020 T10019 compound mouse,Mcm4
R6609 T10021 T10019 punct /,Mcm4
R6610 T10022 T10019 nummod 6,Mcm4
R6611 T10023 T10019 punct /,Mcm4
R6612 T10024 T10019 nummod 7,Mcm4
R6613 T10025 T10026 aux to,unwind
R6614 T10026 T10015 acl unwind,ability
R6615 T10027 T10028 nummod 3,extension
R6616 T10028 T10026 dobj extension,unwind
R6617 T10029 T10027 punct ′,3
R6618 T10030 T10028 punct -,extension
R6619 T10031 T10016 auxpass is,shared
R6620 T10032 T10016 prep by,shared
R6621 T10033 T10034 det the,helicase
R6622 T10034 T10032 pobj helicase,by
R6623 T10035 T10034 amod archaeal,helicase
R6624 T10036 T10034 compound Mcm,helicase
R6625 T10037 T10032 cc but,by
R6626 T10038 T10037 neg not,but
R6627 T10039 T10032 conj by,by
R6628 T10040 T10039 pobj Mcm4,by
R6629 T10041 T10040 punct /,Mcm4
R6630 T10042 T10040 nummod 6,Mcm4
R6631 T10043 T10040 punct /,Mcm4
R6632 T10044 T10040 nummod 7,Mcm4
R6633 T10045 T10040 prep from,Mcm4
R6634 T10046 T10045 pobj S.pombe,from
R6635 T10047 T10046 cc and,S.pombe
R6636 T10048 T10046 conj S.cerevisiae,S.pombe
R6637 T10049 T10050 punct (,27
R6638 T10050 T10016 parataxis 27,shared
R6639 T10051 T10050 nummod 14,27
R6640 T10052 T10050 punct ",",27
R6641 T10053 T10050 nummod 26,27
R6642 T10054 T10050 punct ",",27
R6643 T10055 T10050 punct ),27
R6644 T10056 T10016 punct .,shared
R6645 T10058 T10059 det The,Mcm
R6646 T10059 T10061 nsubj Mcm,unwind
R6647 T10060 T10059 amod archaeal,Mcm
R6648 T10062 T10061 aux can,unwind
R6649 T10063 T10064 compound A,fork
R6650 T10064 T10061 dobj fork,unwind
R6651 T10065 T10064 punct -,fork
R6652 T10066 T10064 punct [,fork
R6653 T10067 T10064 nummod 3,fork
R6654 T10068 T10064 punct ′,fork
R6655 T10069 T10061 punct ],unwind
R6656 T10070 T10061 cc but,unwind
R6657 T10071 T10072 amod eukaryotic,Mcm4
R6658 T10072 T10073 nsubj Mcm4,can
R6659 T10073 T10061 conj can,unwind
R6660 T10074 T10072 punct /,Mcm4
R6661 T10075 T10072 nummod 6,Mcm4
R6662 T10076 T10072 punct /,Mcm4
R6663 T10077 T10072 nummod 7,Mcm4
R6664 T10078 T10073 neg not,can
R6665 T10079 T10061 punct ", ",unwind
R6666 T10080 T10081 mark since,binds
R6667 T10081 T10061 advcl binds,unwind
R6668 T10082 T10083 det the,former
R6669 T10083 T10081 nsubj former,binds
R6670 T10084 T10081 prep to,binds
R6671 T10085 T10086 amod double,stranded
R6672 T10086 T10088 amod stranded,DNA
R6673 T10087 T10086 punct -,stranded
R6674 T10088 T10084 pobj DNA,to
R6675 T10089 T10081 cc but,binds
R6676 T10090 T10091 det the,latter
R6677 T10091 T10092 nsubj latter,27
R6678 T10092 T10081 conj 27,binds
R6679 T10093 T10092 aux does,27
R6680 T10094 T10092 neg not,27
R6681 T10095 T10092 punct (,27
R6682 T10096 T10092 nummod 5,27
R6683 T10097 T10092 punct ",",27
R6684 T10098 T10092 punct ),27
R6685 T10099 T10061 punct .,unwind
R6686 T10101 T10102 mark While,translocate
R6687 T10102 T10107 advcl translocate,observed
R6688 T10103 T10104 compound yeast,Mcm
R6689 T10104 T10105 compound Mcm,helicases
R6690 T10105 T10102 nsubj helicases,translocate
R6691 T10106 T10102 aux can,translocate
R6692 T10108 T10102 prep on,translocate
R6693 T10109 T10110 compound duplex,DNA
R6694 T10110 T10108 pobj DNA,on
R6695 T10111 T10107 punct ", ",observed
R6696 T10112 T10113 amod such,activity
R6697 T10113 T10107 nsubjpass activity,observed
R6698 T10114 T10107 auxpass was,observed
R6699 T10115 T10107 neg not,observed
R6700 T10116 T10107 prep with,observed
R6701 T10117 T10118 amod mammalian,Mcm4
R6702 T10118 T10116 pobj Mcm4,with
R6703 T10119 T10118 punct /,Mcm4
R6704 T10120 T10118 nummod 6,Mcm4
R6705 T10121 T10118 punct /,Mcm4
R6706 T10122 T10118 nummod 7,Mcm4
R6707 T10123 T10124 punct (,shown
R6708 T10124 T10107 parataxis shown,observed
R6709 T10125 T10124 nsubj data,shown
R6710 T10126 T10124 neg not,shown
R6711 T10127 T10124 punct ),shown
R6712 T10128 T10107 punct .,observed
R6713 T10130 T10131 nsubj Occurrence,lead
R6714 T10132 T10130 prep of,Occurrence
R6715 T10133 T10134 npadvmod AT,rich
R6716 T10134 T10136 amod rich,sequences
R6717 T10135 T10134 punct -,rich
R6718 T10136 T10132 pobj sequences,of
R6719 T10137 T10130 punct ", ",Occurrence
R6720 T10138 T10130 prep with,Occurrence
R6721 T10139 T10140 amod asymmetric,distribution
R6722 T10140 T10138 pobj distribution,with
R6723 T10141 T10140 prep of,distribution
R6724 T10142 T10141 pobj adenine,of
R6725 T10143 T10142 cc and,adenine
R6726 T10144 T10142 conj thymine,adenine
R6727 T10145 T10140 punct ", ",distribution
R6728 T10146 T10140 prep near,distribution
R6729 T10147 T10148 det the,origins
R6730 T10148 T10146 pobj origins,near
R6731 T10149 T10148 compound replication,origins
R6732 T10150 T10131 punct ", ",lead
R6733 T10151 T10131 dobj us,lead
R6734 T10152 T10153 aux to,propose
R6735 T10153 T10131 xcomp propose,lead
R6736 T10154 T10155 mark that,play
R6737 T10155 T10153 ccomp play,propose
R6738 T10156 T10155 nsubj Mcm,play
R6739 T10157 T10155 aux may,play
R6740 T10158 T10159 det a,role
R6741 T10159 T10155 dobj role,play
R6742 T10160 T10155 prep in,play
R6743 T10161 T10160 pobj selection,in
R6744 T10162 T10161 prep of,selection
R6745 T10163 T10164 compound initiation,sites
R6746 T10164 T10162 pobj sites,of
R6747 T10165 T10164 prep of,sites
R6748 T10166 T10167 amod mammalian,DNA
R6749 T10167 T10168 compound DNA,replication
R6750 T10168 T10165 pobj replication,of
R6751 T10169 T10131 punct ", ",lead
R6752 T10170 T10131 cc and,lead
R6753 T10171 T10131 conj prompted,lead
R6754 T10172 T10171 dobj us,prompted
R6755 T10173 T10174 aux to,examine
R6756 T10174 T10171 xcomp examine,prompted
R6757 T10175 T10176 det the,ability
R6758 T10176 T10174 dobj ability,examine
R6759 T10177 T10176 prep of,ability
R6760 T10178 T10177 pobj sequences,of
R6761 T10179 T10178 prep from,sequences
R6762 T10180 T10181 amod human,origins
R6763 T10181 T10179 pobj origins,from
R6764 T10182 T10181 compound replication,origins
R6765 T10183 T10184 aux to,activate
R6766 T10184 T10176 acl activate,ability
R6767 T10185 T10186 nmod Mcm4,helicase
R6768 T10186 T10184 dobj helicase,activate
R6769 T10187 T10185 punct /,Mcm4
R6770 T10188 T10185 nummod 6,Mcm4
R6771 T10189 T10185 punct /,Mcm4
R6772 T10190 T10185 nummod 7,Mcm4
R6773 T10191 T10131 punct .,lead
R6774 T10193 T10194 preconj Both,B2
R6775 T10194 T10197 nmod B2,origins
R6776 T10195 T10194 nmod lamin,B2
R6777 T10196 T10194 punct -,B2
R6778 T10197 T10202 nsubj origins,served
R6779 T10198 T10194 cc and,B2
R6780 T10199 T10200 compound c,myc
R6781 T10200 T10194 conj myc,B2
R6782 T10201 T10200 punct -,myc
R6783 T10203 T10202 prep as,served
R6784 T10204 T10205 amod efficient,activator
R6785 T10205 T10203 pobj activator,as
R6786 T10206 T10205 prep for,activator
R6787 T10207 T10208 compound Mcm,helicase
R6788 T10208 T10206 pobj helicase,for
R6789 T10209 T10210 advmod in,vitro
R6790 T10210 T10202 advmod vitro,served
R6791 T10211 T10202 punct .,served
R6792 T10213 T10214 advcl Consistent,reported
R6793 T10215 T10213 prep with,Consistent
R6794 T10216 T10215 pobj it,with
R6795 T10217 T10214 punct ", ",reported
R6796 T10218 T10219 npadvmod site,specific
R6797 T10219 T10221 amod specific,loading
R6798 T10220 T10219 punct -,specific
R6799 T10221 T10214 nsubjpass loading,reported
R6800 T10222 T10221 prep of,loading
R6801 T10223 T10222 pobj Mcm,of
R6802 T10224 T10221 prep in,loading
R6803 T10225 T10226 det the,zone
R6804 T10226 T10224 pobj zone,in
R6805 T10227 T10228 compound DNA,initiation
R6806 T10228 T10226 compound initiation,zone
R6807 T10229 T10228 compound replication,initiation
R6808 T10230 T10226 prep of,zone
R6809 T10231 T10232 det the,myc
R6810 T10232 T10230 pobj myc,of
R6811 T10233 T10232 compound c,myc
R6812 T10234 T10232 punct -,myc
R6813 T10235 T10214 auxpass was,reported
R6814 T10236 T10214 advmod recently,reported
R6815 T10237 T10238 punct (,33
R6816 T10238 T10214 parataxis 33,reported
R6817 T10239 T10238 punct ),33
R6818 T10240 T10214 punct .,reported
R6819 T10242 T10243 nsubj We,examined
R6820 T10244 T10243 aux have,examined
R6821 T10245 T10243 prep in,examined
R6822 T10246 T10245 pobj detail,in
R6823 T10247 T10248 det the,effect
R6824 T10248 T10243 dobj effect,examined
R6825 T10249 T10248 prep of,effect
R6826 T10250 T10251 compound sequence,context
R6827 T10251 T10249 pobj context,of
R6828 T10252 T10251 prep of,context
R6829 T10253 T10254 det the,DNA
R6830 T10254 T10252 pobj DNA,of
R6831 T10255 T10256 amod single,stranded
R6832 T10256 T10254 amod stranded,DNA
R6833 T10257 T10256 punct -,stranded
R6834 T10258 T10248 prep on,effect
R6835 T10259 T10260 det the,activity
R6836 T10260 T10258 pobj activity,on
R6837 T10261 T10260 compound helicase,activity
R6838 T10262 T10260 prep of,activity
R6839 T10263 T10262 pobj Mcm,of
R6840 T10264 T10243 punct .,examined
R6841 T10266 T10267 det The,results
R6842 T10267 T10268 nsubj results,indicate
R6843 T10269 T10270 mark that,is
R6844 T10270 T10268 ccomp is,indicate
R6845 T10271 T10272 compound thymine,content
R6846 T10272 T10270 nsubj content,is
R6847 T10273 T10272 prep of,content
R6848 T10274 T10275 nummod 50,%
R6849 T10275 T10273 pobj %,of
R6850 T10276 T10270 acomp sufficient,is
R6851 T10277 T10276 prep for,sufficient
R6852 T10278 T10279 det the,activity
R6853 T10279 T10277 pobj activity,for
R6854 T10280 T10279 amod maximum,activity
R6855 T10281 T10279 compound helicase,activity
R6856 T10282 T10268 punct .,indicate
R6857 T10284 T10285 det The,efficiency
R6858 T10285 T10286 nsubj efficiency,decreased
R6859 T10287 T10285 prep of,efficiency
R6860 T10288 T10287 pobj displacement,of
R6861 T10289 T10290 mark as,dropped
R6862 T10290 T10286 advcl dropped,decreased
R6863 T10291 T10292 det the,content
R6864 T10292 T10290 nsubj content,dropped
R6865 T10293 T10292 compound thymine,content
R6866 T10294 T10292 prep of,content
R6867 T10295 T10296 det the,tail
R6868 T10296 T10294 pobj tail,of
R6869 T10297 T10296 nummod 3,tail
R6870 T10298 T10297 punct ′,3
R6871 T10299 T10296 punct -,tail
R6872 T10300 T10290 prep to,dropped
R6873 T10301 T10302 nummod 33,%
R6874 T10302 T10300 pobj %,to
R6875 T10303 T10304 punct (,Figure
R6876 T10304 T10290 parataxis Figure,dropped
R6877 T10305 T10304 nummod 6,Figure
R6878 T10306 T10304 punct ),Figure
R6879 T10307 T10286 punct .,decreased
R6880 T10309 T10310 det The,stretches
R6881 T10310 T10311 nsubjpass stretches,required
R6882 T10312 T10310 prep of,stretches
R6883 T10313 T10314 compound thymine,residues
R6884 T10314 T10312 pobj residues,of
R6885 T10315 T10311 aux may,required
R6886 T10316 T10311 neg not,required
R6887 T10317 T10311 auxpass be,required
R6888 T10318 T10311 advmod necessarily,required
R6889 T10319 T10311 punct ", ",required
R6890 T10320 T10321 mark since,served
R6891 T10321 T10311 advcl served,required
R6892 T10322 T10321 nsubj repeats,served
R6893 T10323 T10322 prep of,repeats
R6894 T10324 T10325 compound TC,dinucleotides
R6895 T10325 T10323 pobj dinucleotides,of
R6896 T10326 T10321 prep as,served
R6897 T10327 T10328 det a,activator
R6898 T10328 T10326 pobj activator,as
R6899 T10329 T10328 amod potent,activator
R6900 T10330 T10328 prep for,activator
R6901 T10331 T10330 pobj Mcm4,for
R6902 T10332 T10331 punct /,Mcm4
R6903 T10333 T10331 nummod 6,Mcm4
R6904 T10334 T10331 punct /,Mcm4
R6905 T10335 T10331 nummod 7,Mcm4
R6906 T10336 T10311 punct .,required
R6907 T10338 T10339 nsubj We,noticed
R6908 T10340 T10339 advmod also,noticed
R6909 T10341 T10342 mark that,is
R6910 T10342 T10339 ccomp is,noticed
R6911 T10343 T10344 det the,presence
R6912 T10344 T10342 nsubj presence,is
R6913 T10345 T10344 prep of,presence
R6914 T10346 T10347 det a,structure
R6915 T10347 T10345 pobj structure,of
R6916 T10348 T10347 amod secondary,structure
R6917 T10349 T10347 prep within,structure
R6918 T10350 T10351 det the,DNA
R6919 T10351 T10349 pobj DNA,within
R6920 T10352 T10353 amod single,stranded
R6921 T10353 T10351 amod stranded,DNA
R6922 T10354 T10353 punct -,stranded
R6923 T10355 T10342 acomp inhibitory,is
R6924 T10356 T10355 prep for,inhibitory
R6925 T10357 T10358 compound helicase,action
R6926 T10358 T10356 pobj action,for
R6927 T10359 T10339 punct .,noticed
R6928 T10361 T10362 compound Nuclease,footprinting
R6929 T10362 T10363 compound footprinting,assays
R6930 T10363 T10364 nsubj assays,indicated
R6931 T10365 T10366 mark that,interfered
R6932 T10366 T10364 ccomp interfered,indicated
R6933 T10367 T10366 nsubjpass binding,interfered
R6934 T10368 T10366 auxpass was,interfered
R6935 T10369 T10366 agent by,interfered
R6936 T10370 T10371 det the,structure
R6937 T10371 T10369 pobj structure,by
R6938 T10372 T10371 amod secondary,structure
R6939 T10373 T10374 punct (,shown
R6940 T10374 T10366 parataxis shown,interfered
R6941 T10375 T10374 nsubj data,shown
R6942 T10376 T10374 neg not,shown
R6943 T10377 T10374 punct ),shown
R6944 T10378 T10364 punct .,indicated
R6945 T10380 T10381 advmod Thus,concluded
R6946 T10382 T10381 punct ", ",concluded
R6947 T10383 T10381 nsubj we,concluded
R6948 T10384 T10381 aux have,concluded
R6949 T10385 T10386 mark that,activated
R6950 T10386 T10381 ccomp activated,concluded
R6951 T10387 T10388 nmod Mcm4,helicase
R6952 T10388 T10386 nsubjpass helicase,activated
R6953 T10389 T10387 punct /,Mcm4
R6954 T10390 T10387 nummod 6,Mcm4
R6955 T10391 T10387 punct /,Mcm4
R6956 T10392 T10387 nummod 7,Mcm4
R6957 T10393 T10386 auxpass is,activated
R6958 T10394 T10395 advmod most,efficiently
R6959 T10395 T10386 advmod efficiently,activated
R6960 T10396 T10386 agent by,activated
R6961 T10397 T10398 amod non-structured,DNA
R6962 T10398 T10396 pobj DNA,by
R6963 T10399 T10400 amod single,stranded
R6964 T10400 T10398 amod stranded,DNA
R6965 T10401 T10400 punct -,stranded
R6966 T10402 T10398 prep with,DNA
R6967 T10403 T10404 compound thymine,content
R6968 T10404 T10402 pobj content,with
R6969 T10405 T10404 prep of,content
R6970 T10406 T10407 nummod 50,%
R6971 T10407 T10405 pobj %,of
R6972 T10408 T10409 cc or,more
R6973 T10409 T10407 nummod more,%
R6974 T10410 T10386 punct ", ",activated
R6975 T10411 T10412 mark although,observed
R6976 T10412 T10386 advcl observed,activated
R6977 T10413 T10414 amod significant,stimulation
R6978 T10414 T10412 nsubjpass stimulation,observed
R6979 T10415 T10412 auxpass is,observed
R6980 T10416 T10412 advmod also,observed
R6981 T10417 T10412 agent by,observed
R6982 T10418 T10417 pobj DNA,by
R6983 T10419 T10418 prep with,DNA
R6984 T10420 T10421 amod less,content
R6985 T10421 T10419 pobj content,with
R6986 T10422 T10421 compound thymine,content
R6987 T10423 T10424 punct (,Figure
R6988 T10424 T10418 parataxis Figure,DNA
R6989 T10425 T10424 nummod 7,Figure
R6990 T10426 T10424 punct ),Figure
R6991 T10427 T10412 punct ", ",observed
R6992 T10428 T10412 advcl suggesting,observed
R6993 T10429 T10430 mark that,is
R6994 T10430 T10428 advcl is,suggesting
R6995 T10431 T10432 det the,specificity
R6996 T10432 T10430 nsubj specificity,is
R6997 T10433 T10432 compound sequence,specificity
R6998 T10434 T10432 prep for,specificity
R6999 T10435 T10436 compound Mcm,helicase
R7000 T10436 T10437 compound helicase,activation
R7001 T10437 T10434 pobj activation,for
R7002 T10438 T10439 advmod rather,relaxed
R7003 T10439 T10430 acomp relaxed,is
R7004 T10440 T10430 cc and,is
R7005 T10441 T10442 mark that,depend
R7006 T10442 T10430 conj depend,is
R7007 T10443 T10444 det the,extent
R7008 T10444 T10442 nsubj extent,depend
R7009 T10445 T10444 prep of,extent
R7010 T10446 T10447 det the,activation
R7011 T10447 T10445 pobj activation,of
R7012 T10448 T10442 aux may,depend
R7013 T10449 T10442 prep on,depend
R7014 T10450 T10451 det the,context
R7015 T10451 T10449 pobj context,on
R7016 T10452 T10451 compound sequence,context
R7017 T10453 T10381 punct .,concluded
R7018 T10455 T10456 nsubj This,be
R7019 T10457 T10456 aux would,be
R7020 T10458 T10456 acomp reasonable,be
R7021 T10459 T10456 prep given,be
R7022 T10460 T10461 det the,flexibility
R7023 T10461 T10459 pobj flexibility,given
R7024 T10462 T10461 cc and,flexibility
R7025 T10463 T10464 amod differential,regulation
R7026 T10464 T10461 conj regulation,flexibility
R7027 T10465 T10461 prep of,flexibility
R7028 T10466 T10467 compound site,selection
R7029 T10467 T10465 pobj selection,of
R7030 T10468 T10461 prep for,flexibility
R7031 T10469 T10468 pobj initiation,for
R7032 T10470 T10469 prep of,initiation
R7033 T10471 T10472 compound DNA,replication
R7034 T10472 T10470 pobj replication,of
R7035 T10473 T10469 prep during,initiation
R7036 T10474 T10473 pobj development,during
R7037 T10475 T10468 cc or,for
R7038 T10476 T10468 conj in,for
R7039 T10477 T10478 amod various,types
R7040 T10478 T10476 pobj types,in
R7041 T10479 T10478 compound cell,types
R7042 T10480 T10461 punct ", ",flexibility
R7043 T10481 T10482 advmod as,as
R7044 T10482 T10461 cc as,flexibility
R7045 T10483 T10482 advmod well,as
R7046 T10484 T10485 det the,variability
R7047 T10485 T10461 conj variability,flexibility
R7048 T10486 T10485 prep in,variability
R7049 T10487 T10488 compound initiation,potential
R7050 T10488 T10486 pobj potential,in
R7051 T10489 T10488 prep of,potential
R7052 T10490 T10491 det each,origin
R7053 T10491 T10489 pobj origin,of
R7054 T10492 T10491 compound replication,origin
R7055 T10493 T10491 prep on,origin
R7056 T10494 T10495 det the,genome
R7057 T10495 T10493 pobj genome,on
R7058 T10496 T10497 advmod even,within
R7059 T10497 T10485 prep within,variability
R7060 T10498 T10499 det the,type
R7061 T10499 T10497 pobj type,within
R7062 T10500 T10499 amod single,type
R7063 T10501 T10499 compound cell,type
R7064 T10502 T10456 punct .,be
R7067 T10855 T10856 nmod Mcm4,helicase
R7068 T10857 T10855 punct /,Mcm4
R7069 T10858 T10855 nummod 6,Mcm4
R7070 T10859 T10855 punct /,Mcm4
R7071 T10860 T10855 nummod 7,Mcm4
R7072 T10861 T10856 prep during,helicase
R7073 T10862 T10863 amod processive,unwinding
R7074 T10863 T10861 pobj unwinding,during
R7075 T10864 T10856 prep at,helicase
R7076 T10865 T10866 det the,fork
R7077 T10866 T10864 pobj fork,at
R7078 T10868 T10869 det The,requirement
R7079 T10869 T10871 nsubj requirement,prompted
R7080 T10870 T10869 amod specific,requirement
R7081 T10872 T10869 prep of,requirement
R7082 T10873 T10874 amod single,stranded
R7083 T10874 T10876 amod stranded,residues
R7084 T10875 T10874 punct -,stranded
R7085 T10876 T10872 pobj residues,of
R7086 T10877 T10876 compound thymine,residues
R7087 T10878 T10869 prep for,requirement
R7088 T10879 T10878 pobj activation,for
R7089 T10880 T10879 prep of,activation
R7090 T10881 T10882 compound Mcm,helicase
R7091 T10882 T10880 pobj helicase,of
R7092 T10883 T10871 dobj us,prompted
R7093 T10884 T10885 aux to,examine
R7094 T10885 T10871 xcomp examine,prompted
R7095 T10886 T10887 mark whether,required
R7096 T10887 T10885 ccomp required,examine
R7097 T10888 T10887 nsubjpass they,required
R7098 T10889 T10887 auxpass are,required
R7099 T10890 T10887 advmod also,required
R7100 T10891 T10887 prep for,required
R7101 T10892 T10893 amod processive,unwinding
R7102 T10893 T10891 pobj unwinding,for
R7103 T10894 T10893 prep of,unwinding
R7104 T10895 T10896 compound duplex,DNA
R7105 T10896 T10894 pobj DNA,of
R7106 T10897 T10871 punct .,prompted
R7107 T10899 T10900 poss Our,results
R7108 T10900 T10901 nsubj results,indicated
R7109 T10902 T10903 mark that,inhibited
R7110 T10903 T10901 ccomp inhibited,indicated
R7111 T10904 T10903 nsubj increase,inhibited
R7112 T10905 T10904 prep of,increase
R7113 T10906 T10907 compound GC,pair
R7114 T10907 T10905 pobj pair,of
R7115 T10908 T10904 prep in,increase
R7116 T10909 T10910 det the,segment
R7117 T10910 T10908 pobj segment,in
R7118 T10911 T10910 compound duplex,segment
R7119 T10912 T10903 advmod significantly,inhibited
R7120 T10913 T10914 det the,activity
R7121 T10914 T10903 dobj activity,inhibited
R7122 T10915 T10916 compound Mcm,helicase
R7123 T10916 T10914 compound helicase,activity
R7124 T10917 T10901 punct .,indicated
R7125 T10919 T10920 compound Duplex,DNA
R7126 T10920 T10921 nsubjpass DNA,displaced
R7127 T10922 T10920 acl composed,DNA
R7128 T10923 T10924 advmod only,of
R7129 T10924 T10922 prep of,composed
R7130 T10925 T10926 compound GC,pairs
R7131 T10926 T10924 pobj pairs,of
R7132 T10927 T10928 punct (,repeats
R7133 T10928 T10926 parataxis repeats,pairs
R7134 T10929 T10928 nummod 10,repeats
R7135 T10930 T10928 prep of,repeats
R7136 T10931 T10930 pobj CGG,of
R7137 T10932 T10928 punct ),repeats
R7138 T10933 T10926 prep on,pairs
R7139 T10934 T10935 det a,fork
R7140 T10935 T10933 pobj fork,on
R7141 T10936 T10935 compound Y,fork
R7142 T10937 T10935 punct -,fork
R7143 T10938 T10921 auxpass was,displaced
R7144 T10939 T10921 neg not,displaced
R7145 T10940 T10941 advmod at,all
R7146 T10941 T10921 advmod all,displaced
R7147 T10942 T10921 punct ", ",displaced
R7148 T10943 T10944 mark while,displaced
R7149 T10944 T10921 advcl displaced,displaced
R7150 T10945 T10946 det the,template
R7151 T10946 T10944 nsubjpass template,displaced
R7152 T10947 T10946 amod same,template
R7153 T10948 T10944 auxpass was,displaced
R7154 T10949 T10944 advmod readily,displaced
R7155 T10950 T10944 agent by,displaced
R7156 T10951 T10952 compound SV40,antigen
R7157 T10952 T10950 pobj antigen,by
R7158 T10953 T10952 compound T,antigen
R7159 T10954 T10952 punct -,antigen
R7160 T10955 T10956 punct (,8B
R7161 T10956 T10944 parataxis 8B,displaced
R7162 T10957 T10956 compound Figure,8B
R7163 T10958 T10956 punct ),8B
R7164 T10959 T10921 punct .,displaced
R7165 T10961 T10962 compound Mcm,helicase
R7166 T10962 T10963 nsubjpass helicase,inhibited
R7167 T10964 T10963 auxpass was,inhibited
R7168 T10965 T10963 agent by,inhibited
R7169 T10966 T10967 det the,presence
R7170 T10967 T10965 pobj presence,by
R7171 T10968 T10967 prep of,presence
R7172 T10969 T10970 npadvmod GC,rich
R7173 T10970 T10972 amod rich,segment
R7174 T10971 T10970 punct -,rich
R7175 T10972 T10968 pobj segment,of
R7176 T10973 T10972 compound duplex,segment
R7177 T10974 T10975 advmod also,on
R7178 T10975 T10967 prep on,presence
R7179 T10976 T10977 det a,substrate
R7180 T10977 T10975 pobj substrate,on
R7181 T10978 T10977 amod circular,substrate
R7182 T10979 T10980 amod single,stranded
R7183 T10980 T10977 amod stranded,substrate
R7184 T10981 T10980 punct -,stranded
R7185 T10982 T10983 amod partial,heteroduplex
R7186 T10983 T10977 compound heteroduplex,substrate
R7187 T10984 T10963 punct .,inhibited
R7188 T10986 T10987 advmod However,was
R7189 T10988 T10987 punct ", ",was
R7190 T10989 T10987 prep on,was
R7191 T10990 T10991 det this,substrate
R7192 T10991 T10989 pobj substrate,on
R7193 T10992 T10987 punct ", ",was
R7194 T10993 T10987 nsubj Mcm4,was
R7195 T10994 T10993 punct /,Mcm4
R7196 T10995 T10993 nummod 6,Mcm4
R7197 T10996 T10993 punct /,Mcm4
R7198 T10997 T10993 nummod 7,Mcm4
R7199 T10998 T10987 acomp able,was
R7200 T10999 T11000 aux to,displace
R7201 T11000 T10998 xcomp displace,able
R7202 T11001 T11000 dobj DNA,displace
R7203 T11002 T11000 prep past,displace
R7204 T11003 T11004 det the,region
R7205 T11004 T11002 pobj region,past
R7206 T11005 T11006 npadvmod GC,rich
R7207 T11006 T11004 amod rich,region
R7208 T11007 T11006 punct -,rich
R7209 T11008 T11000 punct ", ",displace
R7210 T11009 T11010 dep albeit,to
R7211 T11010 T11000 prep to,displace
R7212 T11011 T11012 det a,extent
R7213 T11012 T11010 pobj extent,to
R7214 T11013 T11012 amod limited,extent
R7215 T11014 T11000 punct ", ",displace
R7216 T11015 T11016 advmod when,added
R7217 T11016 T11000 advcl added,displace
R7218 T11017 T11016 nsubjpass it,added
R7219 T11018 T11016 auxpass was,added
R7220 T11019 T11016 prep at,added
R7221 T11020 T11021 det a,concentration
R7222 T11021 T11019 pobj concentration,at
R7223 T11022 T11021 amod high,concentration
R7224 T11023 T10987 punct .,was
R7225 T11025 T11026 prep On,loaded
R7226 T11027 T11028 det the,template
R7227 T11028 T11025 pobj template,On
R7228 T11029 T11030 amod partial,heteroduplex
R7229 T11030 T11028 compound heteroduplex,template
R7230 T11031 T11026 punct ", ",loaded
R7231 T11032 T11026 nsubjpass Mcm,loaded
R7232 T11033 T11026 auxpass is,loaded
R7233 T11034 T11026 prep onto,loaded
R7234 T11035 T11036 det the,DNA
R7235 T11036 T11034 pobj DNA,onto
R7236 T11037 T11036 amod circular,DNA
R7237 T11038 T11039 amod single,stranded
R7238 T11039 T11036 amod stranded,DNA
R7239 T11040 T11039 punct -,stranded
R7240 T11041 T11036 prep of,DNA
R7241 T11042 T11043 nummod 6.4,kb
R7242 T11043 T11041 pobj kb,of
R7243 T11044 T11026 punct ", ",loaded
R7244 T11045 T11046 mark while,loaded
R7245 T11046 T11026 advcl loaded,loaded
R7246 T11047 T11046 nsubjpass it,loaded
R7247 T11048 T11046 auxpass is,loaded
R7248 T11049 T11046 prep onto,loaded
R7249 T11050 T11051 det the,DNA
R7250 T11051 T11049 pobj DNA,onto
R7251 T11052 T11053 nummod 50,nt
R7252 T11053 T11054 npadvmod nt,long
R7253 T11054 T11051 amod long,DNA
R7254 T11055 T11056 nummod 3,tail
R7255 T11056 T11051 compound tail,DNA
R7256 T11057 T11055 punct ′,3
R7257 T11058 T11056 punct -,tail
R7258 T11059 T11051 prep on,DNA
R7259 T11060 T11061 det the,fork
R7260 T11061 T11059 pobj fork,on
R7261 T11062 T11061 compound Y,fork
R7262 T11063 T11061 punct -,fork
R7263 T11064 T11026 punct .,loaded
R7264 T11066 T11067 advmod Thus,reflect
R7265 T11068 T11067 punct ", ",reflect
R7266 T11069 T11070 det the,difference
R7267 T11070 T11067 nsubj difference,reflect
R7268 T11071 T11070 prep of,difference
R7269 T11072 T11073 compound helicase,actions
R7270 T11073 T11071 pobj actions,of
R7271 T11074 T11067 aux may,reflect
R7272 T11075 T11076 det the,efficiency
R7273 T11076 T11067 dobj efficiency,reflect
R7274 T11077 T11076 prep of,efficiency
R7275 T11078 T11079 compound Mcm,loading
R7276 T11079 T11077 pobj loading,of
R7277 T11080 T11067 punct .,reflect
R7278 T11082 T11083 advmod Alternatively,engage
R7279 T11084 T11083 punct ", ",engage
R7280 T11085 T11086 det the,presence
R7281 T11086 T11083 nsubj presence,engage
R7282 T11087 T11086 prep of,presence
R7283 T11088 T11087 punct ‘,of
R7284 T11089 T11090 amod random,sequence
R7285 T11090 T11087 pobj sequence,of
R7286 T11091 T11090 punct ’,sequence
R7287 T11092 T11086 prep at,presence
R7288 T11093 T11094 det the,segment
R7289 T11094 T11092 pobj segment,at
R7290 T11095 T11096 advmod initially,unwound
R7291 T11096 T11094 amod unwound,segment
R7292 T11097 T11094 compound duplex,segment
R7293 T11098 T11094 prep in,segment
R7294 T11099 T11100 det the,template
R7295 T11100 T11098 pobj template,in
R7296 T11101 T11100 amod former,template
R7297 T11102 T11083 aux may,engage
R7298 T11103 T11104 det the,helicase
R7299 T11104 T11083 dobj helicase,engage
R7300 T11105 T11104 compound Mcm,helicase
R7301 T11106 T11083 prep in,engage
R7302 T11107 T11108 det a,conformation
R7303 T11108 T11106 pobj conformation,in
R7304 T11109 T11110 advmod more,active
R7305 T11110 T11108 amod active,conformation
R7306 T11111 T11112 dep which,displace
R7307 T11112 T11108 relcl displace,conformation
R7308 T11113 T11112 aux can,displace
R7309 T11114 T11115 det the,segment
R7310 T11115 T11112 dobj segment,displace
R7311 T11116 T11117 npadvmod GC,rich
R7312 T11117 T11115 amod rich,segment
R7313 T11118 T11117 punct -,rich
R7314 T11119 T11115 compound duplex,segment
R7315 T11120 T11083 punct .,engage
R7316 T11122 T11123 prep On,restored
R7317 T11124 T11125 compound Y,fork
R7318 T11125 T11127 compound fork,substrates
R7319 T11126 T11125 punct -,fork
R7320 T11127 T11122 pobj substrates,On
R7321 T11128 T11123 punct ", ",restored
R7322 T11129 T11123 nsubj increase,restored
R7323 T11130 T11129 prep of,increase
R7324 T11131 T11132 compound AT,pairs
R7325 T11132 T11130 pobj pairs,of
R7326 T11133 T11132 compound base,pairs
R7327 T11134 T11129 prep in,increase
R7328 T11135 T11136 det the,duplex
R7329 T11136 T11134 pobj duplex,in
R7330 T11137 T11138 punct (,repeats
R7331 T11138 T11136 parataxis repeats,duplex
R7332 T11139 T11138 nummod 10,repeats
R7333 T11140 T11138 prep of,repeats
R7334 T11141 T11140 pobj CTT,of
R7335 T11142 T11138 punct ),repeats
R7336 T11143 T11144 det the,unwinding
R7337 T11144 T11123 dobj unwinding,restored
R7338 T11145 T11123 punct .,restored
R7339 T11147 T11148 det These,results
R7340 T11148 T11149 nsubj results,indicate
R7341 T11150 T11151 preconj either,required
R7342 T11151 T11149 advcl required,indicate
R7343 T11152 T11151 mark that,required
R7344 T11153 T11154 compound thymine,residues
R7345 T11154 T11151 nsubjpass residues,required
R7346 T11155 T11151 auxpass are,required
R7347 T11156 T11151 prep on,required
R7348 T11157 T11158 det the,DNA
R7349 T11158 T11156 pobj DNA,on
R7350 T11159 T11158 compound duplex,DNA
R7351 T11160 T11151 prep for,required
R7352 T11161 T11162 amod continuous,unwinding
R7353 T11162 T11160 pobj unwinding,for
R7354 T11163 T11151 punct ", ",required
R7355 T11164 T11151 cc or,required
R7356 T11165 T11166 mark that,is
R7357 T11166 T11151 conj is,required
R7358 T11167 T11166 nsubj Mcm4,is
R7359 T11168 T11167 punct /,Mcm4
R7360 T11169 T11167 nummod 6,Mcm4
R7361 T11170 T11167 punct /,Mcm4
R7362 T11171 T11167 nummod 7,Mcm4
R7363 T11172 T11166 advmod simply,is
R7364 T11173 T11166 neg not,is
R7365 T11174 T11166 acomp efficient,is
R7366 T11175 T11174 advmod enough,efficient
R7367 T11176 T11177 aux to,unwind
R7368 T11177 T11174 xcomp unwind,efficient
R7369 T11178 T11179 det the,pairs
R7370 T11179 T11177 dobj pairs,unwind
R7371 T11180 T11179 amod stable,pairs
R7372 T11181 T11179 compound GC,pairs
R7373 T11182 T11149 punct .,indicate
R7374 T11184 T11185 nsubj Replacement,resulted
R7375 T11186 T11184 prep of,Replacement
R7376 T11187 T11188 det the,guanosine
R7377 T11188 T11186 pobj guanosine,of
R7378 T11189 T11188 amod central,guanosine
R7379 T11190 T11184 prep with,Replacement
R7380 T11191 T11190 pobj inosine,with
R7381 T11192 T11184 prep in,Replacement
R7382 T11193 T11194 det the,DNA
R7383 T11194 T11192 pobj DNA,in
R7384 T11195 T11196 compound CGG,repeat
R7385 T11196 T11194 compound repeat,DNA
R7386 T11197 T11194 compound duplex,DNA
R7387 T11198 T11185 prep in,resulted
R7388 T11199 T11198 pobj displacement,in
R7389 T11200 T11201 punct (,8E
R7390 T11201 T11185 parataxis 8E,resulted
R7391 T11202 T11201 compound Figure,8E
R7392 T11203 T11201 punct ),8E
R7393 T11204 T11205 punct (,31
R7394 T11205 T11185 parataxis 31,resulted
R7395 T11206 T11205 punct ),31
R7396 T11207 T11185 punct ", ",resulted
R7397 T11208 T11185 advcl suggesting,resulted
R7398 T11209 T11210 mark that,be
R7399 T11210 T11208 advcl be,suggesting
R7400 T11211 T11212 det the,presence
R7401 T11212 T11210 nsubj presence,be
R7402 T11213 T11212 amod continuous,presence
R7403 T11214 T11212 prep of,presence
R7404 T11215 T11216 compound AT,pair
R7405 T11216 T11214 pobj pair,of
R7406 T11217 T11216 compound base,pair
R7407 T11218 T11210 aux may,be
R7408 T11219 T11210 neg not,be
R7409 T11220 T11210 acomp essential,be
R7410 T11221 T11220 prep for,essential
R7411 T11222 T11223 det the,function
R7412 T11223 T11221 pobj function,for
R7413 T11224 T11225 compound Mcm,helicase
R7414 T11225 T11223 compound helicase,function
R7415 T11226 T11210 cc and,be
R7416 T11227 T11228 mark that,is
R7417 T11228 T11210 conj is,be
R7418 T11229 T11230 det the,thermostability
R7419 T11230 T11228 nsubj thermostability,is
R7420 T11231 T11230 prep of,thermostability
R7421 T11232 T11233 compound GC,pairs
R7422 T11233 T11231 pobj pairs,of
R7423 T11234 T11233 compound base,pairs
R7424 T11235 T11228 acomp inhibitory,is
R7425 T11236 T11235 prep for,inhibitory
R7426 T11237 T11238 compound helicase,action
R7427 T11238 T11236 pobj action,for
R7428 T11239 T11238 prep of,action
R7429 T11240 T11239 pobj Mcm4,of
R7430 T11241 T11240 punct /,Mcm4
R7431 T11242 T11240 nummod 6,Mcm4
R7432 T11243 T11240 punct /,Mcm4
R7433 T11244 T11240 nummod 7,Mcm4
R7434 T11245 T11185 punct .,resulted
R7435 T11247 T11248 det The,results
R7436 T11248 T11249 nsubj results,reveal
R7437 T11250 T11248 acl described,results
R7438 T11251 T11250 prep in,described
R7439 T11252 T11253 det this,manuscript
R7440 T11253 T11251 pobj manuscript,in
R7441 T11254 T11255 advmod potentially,important
R7442 T11255 T11256 amod important,features
R7443 T11256 T11249 dobj features,reveal
R7444 T11257 T11256 prep of,features
R7445 T11258 T11259 amod mammalian,helicase
R7446 T11259 T11257 pobj helicase,of
R7447 T11260 T11259 nmod Mcm4,helicase
R7448 T11261 T11260 punct /,Mcm4
R7449 T11262 T11260 nummod 6,Mcm4
R7450 T11263 T11260 punct /,Mcm4
R7451 T11264 T11260 nummod 7,Mcm4
R7452 T11265 T11259 punct ", ",helicase
R7453 T11266 T11267 dep which,is
R7454 T11267 T11259 relcl is,helicase
R7455 T11268 T11267 acomp likely,is
R7456 T11269 T11270 aux to,be
R7457 T11270 T11268 xcomp be,likely
R7458 T11271 T11272 det a,component
R7459 T11272 T11270 attr component,be
R7460 T11273 T11272 amod key,component
R7461 T11274 T11272 prep of,component
R7462 T11275 T11276 det the,helicase
R7463 T11276 T11274 pobj helicase,of
R7464 T11277 T11276 amod eukaryotic,helicase
R7465 T11278 T11276 amod replicative,helicase
R7466 T11279 T11249 punct .,reveal
R7467 T11281 T11282 amod Prior,to
R7468 T11282 T11283 prep to,adopt
R7469 T11284 T11282 pobj initiation,to
R7470 T11285 T11284 prep of,initiation
R7471 T11286 T11287 compound DNA,replication
R7472 T11287 T11285 pobj replication,of
R7473 T11288 T11283 punct ", ",adopt
R7474 T11289 T11290 compound Mcm,helicase
R7475 T11290 T11283 nsubj helicase,adopt
R7476 T11291 T11283 aux may,adopt
R7477 T11292 T11293 det a,complex
R7478 T11293 T11283 dobj complex,adopt
R7479 T11294 T11295 amod double,hexameric
R7480 T11295 T11293 amod hexameric,complex
R7481 T11296 T11283 prep at,adopt
R7482 T11297 T11298 det the,region
R7483 T11298 T11296 pobj region,at
R7484 T11299 T11300 advmod partially,melted
R7485 T11300 T11298 amod melted,region
R7486 T11301 T11298 compound origin,region
R7487 T11302 T11283 punct ", ",adopt
R7488 T11303 T11283 cc and,adopt
R7489 T11304 T11305 aux may,catalyze
R7490 T11305 T11283 conj catalyze,adopt
R7491 T11306 T11307 amod concurrent,unwinding
R7492 T11307 T11305 dobj unwinding,catalyze
R7493 T11308 T11307 prep of,unwinding
R7494 T11309 T11310 compound duplex,DNA
R7495 T11310 T11308 pobj DNA,of
R7496 T11311 T11305 prep into,catalyze
R7497 T11312 T11313 det both,directions
R7498 T11313 T11311 pobj directions,into
R7499 T11314 T11283 punct ", ",adopt
R7500 T11315 T11316 mark while,associated
R7501 T11316 T11283 advcl associated,adopt
R7502 T11317 T11316 advmod stably,associated
R7503 T11318 T11316 prep with,associated
R7504 T11319 T11320 det the,origins
R7505 T11320 T11318 pobj origins,with
R7506 T11321 T11320 prep of,origins
R7507 T11322 T11323 compound DNA,replication
R7508 T11323 T11321 pobj replication,of
R7509 T11324 T11283 punct .,adopt
R7510 T11326 T11327 nsubj This,is
R7511 T11328 T11327 acomp similar,is
R7512 T11329 T11328 prep to,similar
R7513 T11330 T11331 det the,model
R7514 T11331 T11329 pobj model,to
R7515 T11332 T11333 compound T,antigen
R7516 T11333 T11331 compound antigen,model
R7517 T11334 T11333 punct -,antigen
R7518 T11335 T11336 advmod originally,proposed
R7519 T11336 T11331 acl proposed,model
R7520 T11337 T11336 agent by,proposed
R7521 T11338 T11337 pobj Smelkova,by
R7522 T11339 T11338 cc and,Smelkova
R7523 T11340 T11338 conj Borowiec,Smelkova
R7524 T11341 T11342 punct (,21
R7525 T11342 T11340 parataxis 21,Borowiec
R7526 T11343 T11342 punct ),21
R7527 T11344 T11327 punct .,is
R7528 T11346 T11347 nsubj We,propose
R7529 T11348 T11349 mark that,mobilized
R7530 T11349 T11347 ccomp mobilized,propose
R7531 T11350 T11349 punct ", ",mobilized
R7532 T11351 T11352 advmod only,activated
R7533 T11352 T11349 advcl activated,mobilized
R7534 T11353 T11352 advmod when,activated
R7535 T11354 T11355 det both,hexamers
R7536 T11355 T11352 nsubjpass hexamers,activated
R7537 T11356 T11352 auxpass are,activated
R7538 T11357 T11352 agent by,activated
R7539 T11358 T11359 det the,sequences
R7540 T11359 T11357 pobj sequences,by
R7541 T11360 T11359 amod interacting,sequences
R7542 T11361 T11362 npadvmod thymine,rich
R7543 T11362 T11359 amod rich,sequences
R7544 T11363 T11362 punct -,rich
R7545 T11364 T11359 relcl present,sequences
R7546 T11365 T11364 prep within,present
R7547 T11366 T11367 det the,region
R7548 T11367 T11365 pobj region,within
R7549 T11368 T11367 amod melted,region
R7550 T11369 T11349 punct ", ",mobilized
R7551 T11370 T11371 det the,helicase
R7552 T11371 T11349 nsubjpass helicase,mobilized
R7553 T11372 T11371 compound Mcm,helicase
R7554 T11373 T11349 auxpass is,mobilized
R7555 T11374 T11349 cc and,mobilized
R7556 T11375 T11376 nsubj initiation,takes
R7557 T11376 T11349 conj takes,mobilized
R7558 T11377 T11376 dobj place,takes
R7559 T11378 T11347 punct .,propose
R7560 T11380 T11381 det A,question
R7561 T11381 T11383 nsubj question,is
R7562 T11382 T11381 amod crucial,question
R7563 T11384 T11385 advmod how,generated
R7564 T11385 T11383 ccomp generated,is
R7565 T11386 T11387 det these,complexes
R7566 T11387 T11385 nsubjpass complexes,generated
R7567 T11388 T11389 advmod double,hexameric
R7568 T11389 T11387 amod hexameric,complexes
R7569 T11390 T11387 compound helicase,complexes
R7570 T11391 T11385 auxpass are,generated
R7571 T11392 T11385 cc and,generated
R7572 T11393 T11385 conj turn,generated
R7573 T11394 T11393 prep into,turn
R7574 T11395 T11396 amod active,helicases
R7575 T11396 T11394 pobj helicases,into
R7576 T11397 T11393 prep at,turn
R7577 T11398 T11399 det the,origins
R7578 T11399 T11397 pobj origins,at
R7579 T11400 T11383 punct .,is
R7580 T11402 T11403 det This,process
R7581 T11403 T11404 nsubj process,involve
R7582 T11405 T11404 aux would,involve
R7583 T11406 T11404 dobj melting,involve
R7584 T11407 T11406 prep of,melting
R7585 T11408 T11409 compound duplex,DNA
R7586 T11409 T11407 pobj DNA,of
R7587 T11410 T11406 punct ", ",melting
R7588 T11411 T11412 dep which,facilitated
R7589 T11412 T11406 relcl facilitated,melting
R7590 T11413 T11412 aux may,facilitated
R7591 T11414 T11412 auxpass be,facilitated
R7592 T11415 T11412 prep by,facilitated
R7593 T11416 T11415 pobj binding,by
R7594 T11417 T11416 prep of,binding
R7595 T11418 T11419 compound preRC,components
R7596 T11419 T11417 pobj components,of
R7597 T11420 T11416 prep in,binding
R7598 T11421 T11422 det the,context
R7599 T11422 T11420 pobj context,in
R7600 T11423 T11422 prep of,context
R7601 T11424 T11425 amod proper,structures
R7602 T11425 T11423 pobj structures,of
R7603 T11426 T11425 compound chromatin,structures
R7604 T11427 T11415 punct ", ",by
R7605 T11428 T11415 cc or,by
R7606 T11429 T11415 conj by,by
R7607 T11430 T11431 amod other,factors
R7608 T11431 T11429 pobj factors,by
R7609 T11432 T11431 amod unwinding,factors
R7610 T11433 T11431 prep including,factors
R7611 T11434 T11435 det a,topoisomerase
R7612 T11435 T11433 pobj topoisomerase,including
R7613 T11436 T11435 cc or,topoisomerase
R7614 T11437 T11438 det a,helicase
R7615 T11438 T11435 conj helicase,topoisomerase
R7616 T11439 T11440 advmod newly,identified
R7617 T11440 T11438 amod identified,helicase
R7618 T11441 T11438 compound Mcm8,helicase
R7619 T11442 T11443 punct (,34
R7620 T11443 T11404 parataxis 34,involve
R7621 T11444 T11445 punct –,36
R7622 T11445 T11443 prep 36,34
R7623 T11446 T11443 punct ),34
R7624 T11447 T11404 punct .,involve
R7625 T11449 T11450 nsubj It,require
R7626 T11451 T11450 aux may,require
R7627 T11452 T11450 advmod also,require
R7628 T11453 T11450 dobj association,require
R7629 T11454 T11453 prep of,association
R7630 T11455 T11456 npadvmod fork,assisting
R7631 T11456 T11458 amod assisting,proteins
R7632 T11457 T11456 punct -,assisting
R7633 T11458 T11454 pobj proteins,of
R7634 T11459 T11460 amod such,as
R7635 T11460 T11458 prep as,proteins
R7636 T11461 T11460 pobj Cdc45,as
R7637 T11462 T11463 punct (,38
R7638 T11463 T11461 parataxis 38,Cdc45
R7639 T11464 T11463 nummod 37,38
R7640 T11465 T11463 punct ",",38
R7641 T11466 T11463 punct ),38
R7642 T11467 T11468 advmod as,as
R7643 T11468 T11458 cc as,proteins
R7644 T11469 T11468 advmod well,as
R7645 T11470 T11471 compound phosphorylation,events
R7646 T11471 T11458 conj events,proteins
R7647 T11472 T11471 prep by,events
R7648 T11473 T11474 nmod Cdk,kinases
R7649 T11474 T11472 pobj kinases,by
R7650 T11475 T11473 cc and,Cdk
R7651 T11476 T11473 conj Cdc7,Cdk
R7652 T11477 T11478 punct (,40
R7653 T11478 T11474 parataxis 40,kinases
R7654 T11479 T11478 nummod 39,40
R7655 T11480 T11478 punct ",",40
R7656 T11481 T11478 punct ),40
R7657 T11482 T11450 punct .,require
R7658 T11484 T11485 nummod One,finding
R7659 T11485 T11487 nsubj finding,is
R7660 T11486 T11485 amod unexpected,finding
R7661 T11488 T11485 prep of,finding
R7662 T11489 T11490 det this,study
R7663 T11490 T11488 pobj study,of
R7664 T11491 T11492 amod low,activity
R7665 T11492 T11487 attr activity,is
R7666 T11493 T11492 compound helicase,activity
R7667 T11494 T11492 prep of,activity
R7668 T11495 T11494 pobj Mcm4,of
R7669 T11496 T11495 punct /,Mcm4
R7670 T11497 T11495 nummod 6,Mcm4
R7671 T11498 T11495 punct /,Mcm4
R7672 T11499 T11495 nummod 7,Mcm4
R7673 T11500 T11492 prep on,activity
R7674 T11501 T11502 npadvmod GC,rich
R7675 T11502 T11504 amod rich,DNA
R7676 T11503 T11502 punct -,rich
R7677 T11504 T11500 pobj DNA,on
R7678 T11505 T11504 compound duplex,DNA
R7679 T11506 T11487 punct .,is
R7680 T11508 T11509 nsubj This,indicates
R7681 T11510 T11508 punct ", ",This
R7682 T11511 T11508 prep in,This
R7683 T11512 T11511 pobj conjunction,in
R7684 T11513 T11512 prep with,conjunction
R7685 T11514 T11515 det the,processivity
R7686 T11515 T11513 pobj processivity,with
R7687 T11516 T11515 amod low,processivity
R7688 T11517 T11515 prep of,processivity
R7689 T11518 T11519 nmod Mcm4,helicase
R7690 T11519 T11517 pobj helicase,of
R7691 T11520 T11518 punct /,Mcm4
R7692 T11521 T11518 nummod 6,Mcm4
R7693 T11522 T11518 punct /,Mcm4
R7694 T11523 T11518 nummod 7,Mcm4
R7695 T11524 T11509 punct ", ",indicates
R7696 T11525 T11509 advmod strongly,indicates
R7697 T11526 T11527 mark that,require
R7698 T11527 T11509 ccomp require,indicates
R7699 T11528 T11529 det the,helicase
R7700 T11529 T11527 nsubj helicase,require
R7701 T11530 T11529 amod replicative,helicase
R7702 T11531 T11529 prep at,helicase
R7703 T11532 T11533 det the,forks
R7704 T11533 T11531 pobj forks,at
R7705 T11534 T11533 compound replication,forks
R7706 T11535 T11527 aux would,require
R7707 T11536 T11527 dobj more,require
R7708 T11537 T11536 prep than,more
R7709 T11538 T11539 nmod Mcm4,complex
R7710 T11539 T11537 pobj complex,than
R7711 T11540 T11538 punct /,Mcm4
R7712 T11541 T11538 nummod 6,Mcm4
R7713 T11542 T11538 punct /,Mcm4
R7714 T11543 T11538 nummod 7,Mcm4
R7715 T11544 T11509 punct .,indicates
R7716 T11546 T11547 prep During,stimulated
R7717 T11548 T11549 det the,unwinding
R7718 T11549 T11546 pobj unwinding,During
R7719 T11550 T11549 amod processive,unwinding
R7720 T11551 T11549 prep of,unwinding
R7721 T11552 T11553 compound duplex,forks
R7722 T11553 T11551 pobj forks,of
R7723 T11554 T11553 compound DNA,forks
R7724 T11555 T11553 compound replication,forks
R7725 T11556 T11547 punct ", ",stimulated
R7726 T11557 T11547 nsubjpass Mcm4,stimulated
R7727 T11558 T11557 punct /,Mcm4
R7728 T11559 T11557 nummod 6,Mcm4
R7729 T11560 T11557 punct /,Mcm4
R7730 T11561 T11557 nummod 7,Mcm4
R7731 T11562 T11547 aux may,stimulated
R7732 T11563 T11547 auxpass be,stimulated
R7733 T11564 T11547 advmod further,stimulated
R7734 T11565 T11547 agent by,stimulated
R7735 T11566 T11565 pobj interaction,by
R7736 T11567 T11566 prep with,interaction
R7737 T11568 T11569 amod other,proteins
R7738 T11569 T11567 pobj proteins,with
R7739 T11570 T11569 punct ", ",proteins
R7740 T11571 T11569 prep including,proteins
R7741 T11572 T11573 amod remaining,subunits
R7742 T11573 T11571 pobj subunits,including
R7743 T11574 T11573 compound Mcm,subunits
R7744 T11575 T11573 punct ", ",subunits
R7745 T11576 T11573 conj Cdc45,subunits
R7746 T11577 T11578 punct (,38
R7747 T11578 T11576 parataxis 38,Cdc45
R7748 T11579 T11578 nummod 37,38
R7749 T11580 T11578 punct ",",38
R7750 T11581 T11578 punct ),38
R7751 T11582 T11576 punct ", ",Cdc45
R7752 T11583 T11576 conj GINS,Cdc45
R7753 T11584 T11585 punct (,42
R7754 T11585 T11583 parataxis 42,GINS
R7755 T11586 T11585 nummod 41,42
R7756 T11587 T11585 punct ",",42
R7757 T11588 T11585 punct ),42
R7758 T11589 T11583 punct ", ",GINS
R7759 T11590 T11591 compound DNA,subunits
R7760 T11591 T11583 conj subunits,GINS
R7761 T11592 T11591 compound polymerase,subunits
R7762 T11593 T11594 punct (,43
R7763 T11594 T11591 parataxis 43,subunits
R7764 T11595 T11594 punct ),43
R7765 T11596 T11591 punct ", ",subunits
R7766 T11597 T11591 conj Mcm8,subunits
R7767 T11598 T11599 punct (,36
R7768 T11599 T11597 parataxis 36,Mcm8
R7769 T11600 T11599 nummod 35,36
R7770 T11601 T11599 punct ",",36
R7771 T11602 T11599 punct ),36
R7772 T11603 T11597 punct ", ",Mcm8
R7773 T11604 T11597 conj etc.,Mcm8
R7774 T11605 T11606 aux to,become
R7775 T11606 T11547 advcl become,stimulated
R7776 T11607 T11608 det a,helicase
R7777 T11608 T11606 attr helicase,become
R7778 T11609 T11610 advmod truly,processive
R7779 T11610 T11608 amod processive,helicase
R7780 T11611 T11610 cc and,processive
R7781 T11612 T11610 conj potent,processive
R7782 T11613 T11608 amod capable,helicase
R7783 T11614 T11613 prep of,capable
R7784 T11615 T11614 pcomp replicating,of
R7785 T11616 T11617 det the,genome
R7786 T11617 T11615 dobj genome,replicating
R7787 T11618 T11617 amod entire,genome
R7788 T11619 T11547 punct .,stimulated