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PMC:549712 / 39824-47948 JSONTXT 5 Projects

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Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T12128 0-5 PR_EXT:000009218 denotes Ptdsr
T12129 31-59 GO:0043277 denotes clearance of apoptotic cells
T12130 44-59 CL:0000445 denotes apoptotic cells
T12131 54-59 CL_GO_EXT:cell denotes cells
T12132 89-94 PR_EXT:000009218 denotes Ptdsr
T12133 112-120 GO_EXT:0004872 denotes receptor
T12134 129-154 GO:0043652 denotes uptake of apoptotic cells
T12135 139-154 CL:0000445 denotes apoptotic cells
T12136 149-154 CL_GO_EXT:cell denotes cells
T12137 173-187 CL:0000445 denotes apoptotic cell
T12138 173-197 GO:0043277 denotes apoptotic cell clearance
T12139 183-187 CL_GO_EXT:cell denotes cell
T12140 209-214 PR_EXT:000009218 denotes Ptdsr
T12141 215-216 SO_EXT:sequence_nullness_or_absence denotes -
T12142 217-218 SO_EXT:sequence_nullness_or_absence denotes -
T12143 219-226 UBERON:0000922 denotes embryos
T12144 252-278 GO:0043277 denotes removal of apoptotic cells
T12145 263-278 CL:0000445 denotes apoptotic cells
T12146 273-278 CL_GO_EXT:cell denotes cells
T12147 313-318 PR_EXT:000009218 denotes Ptdsr
T12148 367-374 UBERON:0000479 denotes tissues
T12149 379-385 UBERON:0000062 denotes organs
T12150 389-394 PR_EXT:000009218 denotes Ptdsr
T12151 394-395 SO_EXT:normal_or_wild_type_or_present denotes +
T12152 396-397 SO_EXT:normal_or_wild_type_or_present denotes +
T12153 402-407 PR_EXT:000009218 denotes Ptdsr
T12154 408-409 SO_EXT:sequence_nullness_or_absence denotes -
T12155 410-411 SO_EXT:sequence_nullness_or_absence denotes -
T12156 412-419 NCBITaxon:33208 denotes animals
T12157 441-450 UBERON:0000922 denotes embryonic
T12158 441-462 GO:0009790 denotes embryonic development
T12159 470-478 PATO_UBERON_EXT:neonate_or_newborn denotes neonates
T12160 507-532 GO:0043652 denotes uptake of apoptotic cells
T12161 517-532 CL:0000445 denotes apoptotic cells
T12162 527-532 CL_GO_EXT:cell denotes cells
T12163 578-590 GO:0006909 denotes phagocytosis
T12164 640-665 GO:0043652 denotes uptake of apoptotic cells
T12165 650-665 CL:0000445 denotes apoptotic cells
T12166 660-665 CL_GO_EXT:cell denotes cells
T12167 669-674 PR_EXT:000009218 denotes Ptdsr
T12168 675-676 SO_EXT:sequence_nullness_or_absence denotes -
T12169 677-678 SO_EXT:sequence_nullness_or_absence denotes -
T12170 679-690 CL:0000235 denotes macrophages
T12171 711-722 CL:0000235 denotes macrophages
T12172 754-763 SO_EXT:wild_type_entity_or_quality denotes wild-type
T12173 781-786 CL_GO_EXT:cell denotes cells
T12174 839-844 PR_EXT:000009218 denotes Ptdsr
T12175 848-862 CL:0000445 denotes apoptotic cell
T12176 848-872 GO:0043277 denotes apoptotic cell clearance
T12177 858-862 CL_GO_EXT:cell denotes cell
T12178 980-998 CHEBI:18303 denotes phosphatidylserine
T12179 980-1007 PR_EXT:000009218 denotes phosphatidylserine receptor
T12180 999-1007 GO_EXT:0004872 denotes receptor
T12181 1008-1012 SO_EXT:sequence_nullness denotes null
T12182 1013-1019 SO_EXT:0001023 denotes allele
T12183 1023-1033 NCBITaxon:6239 denotes C. elegans
T12184 1067-1072 NCBITaxon:10088 denotes mouse
T12185 1105-1114 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12186 1105-1120 CL:0000445 denotes apoptotic cells
T12187 1115-1120 CL_GO_EXT:cell denotes cells
T12188 1124-1129 PR_EXT:000009218 denotes Ptdsr
T12189 1151-1158 NCBITaxon:33208 denotes animals
T12190 1191-1198 UBERON:0000479 denotes tissues
T12191 1273-1277 UBERON:0002048 denotes lung
T12192 1279-1287 UBERON:0001891 denotes midbrain
T12193 1292-1298 UBERON:0000966 denotes retina
T12194 1315-1324 GO:0007565 denotes gestation
T12195 1340-1349 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12196 1340-1355 CL:0000445 denotes apoptotic cells
T12197 1350-1355 CL_GO_EXT:cell denotes cells
T12198 1445-1453 CL_GO_EXT:cell denotes cellular
T12199 1468-1477 GO:0006915 denotes apoptosis
T12200 1490-1503 UBERON:0001781 denotes retina layers
T12201 1533-1540 GO:0007567 denotes natally
T12202 1551-1560 GO:0006915 denotes apoptosis
T12203 1580-1593 GO_PATO_EXT:physiological_process_or_quality denotes physiological
T12204 1622-1633 GO:0042592 denotes homeostasis
T12205 1637-1652 UBERON:0000115 denotes lung epithelium
T12206 1659-1664 GO:0007567 denotes birth
T12207 1705-1714 UBERON:0002048 denotes pulmonary
T12208 1715-1727 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T12209 1743-1747 UBERON:0002048 denotes lung
T12210 1743-1759 GO:0030324 denotes lung development
T12211 1775-1780 GO:0007567 denotes natal
T12212 1790-1799 GO:0006915 denotes apoptosis
T12213 1854-1863 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12214 1854-1869 CL:0000445 denotes apoptotic cells
T12215 1864-1869 CL_GO_EXT:cell denotes cells
T12216 1883-1887 UBERON:0002048 denotes lung
T12217 1888-1894 UBERON:0000479 denotes tissue
T12218 1906-1919 GO:0009790 denotes embryogenesis
T12219 1923-1928 PR_EXT:000009218 denotes Ptdsr
T12220 1928-1929 SO_EXT:normal_or_wild_type_or_present denotes +
T12221 1930-1931 SO_EXT:normal_or_wild_type_or_present denotes +
T12222 1936-1941 PR_EXT:000009218 denotes Ptdsr
T12223 1942-1943 SO_EXT:sequence_nullness_or_absence denotes -
T12224 1944-1945 SO_EXT:sequence_nullness_or_absence denotes -
T12225 1946-1950 NCBITaxon:10088 denotes mice
T12226 2008-2013 UBERON:0002107 denotes liver
T12227 2018-2024 UBERON:0002370 denotes thymus
T12228 2067-2072 PR_EXT:000009218 denotes Ptdsr
T12229 2072-2073 SO_EXT:normal_or_wild_type_or_present denotes +
T12230 2074-2075 SO_EXT:sequence_nullness_or_absence denotes -
T12231 2080-2085 PR_EXT:000009218 denotes Ptdsr
T12232 2086-2087 SO_EXT:sequence_nullness_or_absence denotes -
T12233 2088-2089 SO_EXT:sequence_nullness_or_absence denotes -
T12234 2090-2097 UBERON:0000922 denotes embryos
T12235 2164-2169 CL_GO_EXT:cell denotes cells
T12236 2173-2178 PR_EXT:000009218 denotes Ptdsr
T12237 2189-2196 UBERON:0000922 denotes embryos
T12238 2207-2219 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T12239 2238-2243 CL_GO_EXT:cell denotes cells
T12240 2249-2254 PR_EXT:000001813 denotes F4/80
T12241 2264-2275 CL:0000235 denotes macrophages
T12242 2296-2301 PR_EXT:000009218 denotes Ptdsr
T12243 2302-2303 SO_EXT:sequence_nullness_or_absence denotes -
T12244 2304-2305 SO_EXT:sequence_nullness_or_absence denotes -
T12245 2306-2313 UBERON:0000922 denotes embryos
T12246 2368-2380 GO:0006909 denotes phagocytosed
T12247 2396-2401 CL_GO_EXT:cell denotes cells
T12248 2445-2450 PR_EXT:000001813 denotes F4/80
T12249 2460-2465 CL_GO_EXT:cell denotes cells
T12250 2599-2604 CL_GO_EXT:cell denotes cells
T12251 2619-2630 CL:0000235 denotes macrophages
T12252 2640-2647 UBERON:0000479 denotes tissues
T12253 2718-2731 GO:0009790 denotes embryogenesis
T12254 2733-2743 CL:0000235 denotes macrophage
T12255 2753-2781 GO:0043277 denotes clearance of apoptotic cells
T12256 2766-2781 CL:0000445 denotes apoptotic cells
T12257 2776-2781 CL_GO_EXT:cell denotes cells
T12258 2840-2866 GO:0043277 denotes removal of apoptotic cells
T12259 2851-2866 CL:0000445 denotes apoptotic cells
T12260 2861-2866 CL_GO_EXT:cell denotes cells
T12261 2876-2883 UBERON:0000479 denotes tissues
T12262 2890-2911 GO:0012501 denotes programmed cell death
T12263 2901-2905 CL_GO_EXT:cell denotes cell
T12264 2947-2960 GO:0009790 denotes embryogenesis
T12265 2988-3001 UBERON:0005294 denotes genital ridge
T12266 3009-3014 UBERON:0000991 denotes gonad
T12267 3009-3028 GO:0035262 denotes gonad morphogenesis
T12268 3033-3048 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T12269 3056-3067 UBERON:0001049 denotes neural tube
T12270 3091-3103 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T12271 3107-3116 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12272 3107-3122 CL:0000445 denotes apoptotic cells
T12273 3117-3122 CL_GO_EXT:cell denotes cells
T12274 3127-3138 CL:0000235 denotes macrophages
T12275 3175-3203 GO:0043277 denotes clearance of apoptotic cells
T12276 3188-3203 CL:0000445 denotes apoptotic cells
T12277 3198-3203 CL_GO_EXT:cell denotes cells
T12278 3252-3257 CL_GO_EXT:cell denotes cells
T12279 3273-3284 CL:0000235 denotes macrophages
T12280 3300-3309 GO_EXT:biological_recruitment denotes recruited
T12281 3327-3336 GO:0006915 denotes apoptosis
T12282 3413-3418 PR_EXT:000009218 denotes Ptdsr
T12283 3446-3452 SO_EXT:sequence_altered_entity denotes mutant
T12284 3494-3504 CL:0000235 denotes macrophage
T12285 3509-3514 PR_EXT:000001944 denotes Sfpi1
T12286 3524-3531 UBERON:0000922 denotes embryos
T12287 3559-3572 GO:0030097 denotes hematopoietic
T12288 3590-3603 GO_EXT:transcription denotes transcription
T12289 3590-3610 GO_EXT:transcription_factor denotes transcription factor
T12290 3611-3615 PR_EXT:000001944 denotes PU.1
T12291 3627-3658 GO:0043277 denotes phagocytosis of apoptotic cells
T12292 3643-3658 CL:0000445 denotes apoptotic cells
T12293 3653-3658 CL_GO_EXT:cell denotes cells
T12294 3666-3679 GO:0009790 denotes embryogenesis
T12295 3708-3719 UBERON:0003104 denotes mesenchymal
T12296 3754-3772 CHEBI:18303 denotes phosphatidylserine
T12297 3831-3836 CL_GO_EXT:cell denotes cells
T12298 3854-3865 GO:0006909 denotes phagocytose
T12299 3866-3875 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12300 3866-3881 CL:0000445 denotes apoptotic cells
T12301 3876-3881 CL_GO_EXT:cell denotes cells
T12302 3908-3922 CL:0000445 denotes apoptotic cell
T12303 3908-3932 GO:0043277 denotes apoptotic cell clearance
T12304 3918-3922 CL_GO_EXT:cell denotes cell
T12305 3972-3977 CL_GO_EXT:cell denotes cells
T12306 4005-4010 PR_EXT:000009218 denotes Ptdsr
T12307 4095-4120 GO:0043652 denotes uptake of apoptotic cells
T12308 4105-4120 CL:0000445 denotes apoptotic cells
T12309 4115-4120 CL_GO_EXT:cell denotes cells
T12310 4124-4129 PR_EXT:000009218 denotes Ptdsr
T12311 4130-4131 SO_EXT:sequence_nullness_or_absence denotes -
T12312 4132-4133 SO_EXT:sequence_nullness_or_absence denotes -
T12313 4134-4145 CL:0000235 denotes macrophages
T12314 4169-4181 GO:0006909 denotes phagocytosis
T12315 4209-4214 UBERON:0002107 denotes liver
T12316 4223-4234 CL:0000235 denotes macrophages
T12317 4282-4296 CHEBI_EXT:thioglycolate denotes thioglycollate
T12318 4297-4305 _FRAGMENT denotes elicited
T12320 4306-4316 UBERON:0001179 denotes peritoneal
T12321 4306-4328 CL:0000581 denotes peritoneal macrophages
T12319 4317-4328 CL:0000861 denotes macrophages
T12322 4344-4352 GO_EXT:biological_movement_or_translocation_process denotes transfer
T12323 4356-4361 PR_EXT:000009218 denotes Ptdsr
T12324 4362-4363 SO_EXT:sequence_nullness_or_absence denotes -
T12325 4364-4365 SO_EXT:sequence_nullness_or_absence denotes -
T12326 4366-4379 GO:0030097 denotes hematopoietic
T12327 4366-4390 CL:0000037 denotes hematopoietic stem cells
T12328 4385-4390 CL_GO_EXT:cell denotes cells
T12329 4498-4508 CL:0000235 denotes macrophage
T12330 4512-4516 CL_GO_EXT:cell denotes cell
T12331 4512-4528 UBERON_EXT:cell_clump_or_cluster_or_group_or_mass_or_population denotes cell populations
T12332 4569-4574 PR_EXT:000009218 denotes Ptdsr
T12333 4631-4644 GO:0030097 denotes hematopoiesis
T12334 4675-4686 GO_EXT:biological_recruitment denotes recruitment
T12335 4691-4701 _FRAGMENT denotes activation
T12337 4702-4717 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T12336 4718-4732 GO:0042116 denotes of macrophages
T12338 4721-4732 CL:0000235 denotes macrophages
T12339 4748-4756 GO_EXT:biological_movement_or_translocation_process denotes transfer
T12340 4761-4775 CHEBI_EXT:thioglycolate denotes thioglycollate
T12341 4804-4809 PR_EXT:000009218 denotes Ptdsr
T12342 4877-4882 PR_EXT:000009218 denotes Ptdsr
T12343 4892-4896 NCBITaxon:10088 denotes mice
T12344 4988-4995 SO_EXT:0000704 denotes genetic
T12345 5030-5044 CL:0000445 denotes apoptotic cell
T12346 5030-5055 GO:0043652 denotes apoptotic cell engulfment
T12347 5040-5044 CL_GO_EXT:cell denotes cell
T12348 5070-5084 CHEBI_EXT:thioglycolate denotes thioglycollate
T12349 5085-5105 CL:0000861 denotes elicited macrophages
T12350 5137-5141 NCBITaxon:10088 denotes mice
T12351 5174-5188 CL:0000445 denotes apoptotic cell
T12352 5174-5195 GO:0043652 denotes apoptotic cell uptake
T12353 5184-5188 CL_GO_EXT:cell denotes cell
T12354 5336-5359 GO:0006911 denotes phagocytotic engulfment
T12355 5372-5377 PR_EXT:000009218 denotes Ptdsr
T12356 5388-5399 CL:0000235 denotes macrophages
T12357 5448-5453 PR_EXT:000009218 denotes Ptdsr
T12358 5453-5454 SO_EXT:normal_or_wild_type_or_present denotes +
T12359 5455-5456 SO_EXT:normal_or_wild_type_or_present denotes +
T12360 5461-5466 PR_EXT:000009218 denotes Ptdsr
T12361 5467-5468 SO_EXT:sequence_nullness_or_absence denotes -
T12362 5469-5470 SO_EXT:sequence_nullness_or_absence denotes -
T12363 5471-5482 CL:0000235 denotes macrophages
T12364 5490-5499 GO_EXT:secretion_entity_or_process denotes secretion
T12365 5517-5529 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T12366 5530-5539 GO_EXT:0005125 denotes cytokines
T12367 5563-5566 CHEBI:16412 denotes LPS
T12368 5571-5580 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T12369 5571-5586 CL:0000445 denotes apoptotic cells
T12370 5581-5586 CL_GO_EXT:cell denotes cells
T12371 5616-5624 CL_GO_EXT:cell denotes cellular
T12372 5616-5635 GO:0001775 denotes cellular activation
T12373 5640-5648 CHEBI_EXT:35224 denotes effector
T12374 5676-5681 PR_EXT:000009218 denotes Ptdsr
T12375 5682-5689 SO_EXT:sequence_deletion_process denotes deleted
T12376 5690-5701 CL:0000235 denotes macrophages
T12377 5759-5769 CL:0000235 denotes macrophage
T12378 5759-5780 GO:0042116 denotes macrophage activation
T12379 5802-5807 PR_EXT:000009218 denotes Ptdsr
T12380 5884-5891 GO:0005634 denotes nuclear
T12381 5892-5904 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T12382 5912-5917 PR_EXT:000009218 denotes Ptdsr
T12383 5918-5925 CHEBI_PR_EXT:protein denotes protein
T12384 5991-5998 SO_EXT:0000704 denotes genetic
T12385 6027-6045 CHEBI:18303 denotes phosphatidylserine
T12386 6027-6054 PR_EXT:000009218 denotes phosphatidylserine receptor
T12387 6046-6054 GO_EXT:0004872 denotes receptor
T12388 6067-6077 NCBITaxon:6239 denotes C. elegans
T12389 6133-6138 PR_EXT:Q9GYI4 denotes psr-1
T12390 6144-6154 NCBITaxon:6239 denotes C. elegans
T12391 6155-6162 SO_EXT:0000853 denotes homolog
T12392 6166-6171 PR_EXT:000009218 denotes Ptdsr
T12393 6190-6194 CL_GO_EXT:cell denotes cell
T12394 6190-6212 GO:0043652 denotes cell-corpse engulfment
T12395 6222-6227 PR_EXT:Q9GYI4 denotes psr-1
T12396 6228-6232 GO:0016246 denotes RNAi
T12397 6386-6391 PR_EXT:Q9GYI4 denotes psr-1
T12398 6448-6453 PR_EXT:Q9NHC3 denotes Ced-2
T12399 6455-6461 PR_EXT:000039485 denotes Crk II
T12400 6471-6479 PR_EXT:000006616 denotes Dock 180
T12401 6482-6488 PR_EXT:Q03206 denotes Ced-10
T12402 6490-6495 PR_EXT:000013660 denotes Rac 1
T12403 6501-6507 PR_EXT:Q8STE5 denotes Ced-12
T12404 6509-6513 PR_EXT:ELMO denotes Elmo
T12405 6533-6537 CL_GO_EXT:cell denotes cell
T12406 6533-6555 GO:0043652 denotes cell-corpse engulfment
T12407 6572-6576 NCBITaxon_EXT:worm denotes worm
T12408 6621-6626 PR_EXT:Q9GYI4 denotes psr-1
T12409 6627-6634 SO_EXT:sequence_altered_entity denotes mutants
T12410 6677-6687 GO:0010467 denotes expressing
T12411 6688-6698 SO_EXT:transgenic_entity denotes transgenic
T12412 6699-6704 NCBITaxon_EXT:worm denotes worms
T12413 6776-6786 NCBITaxon:6239 denotes C. elegans
T12414 6798-6805 SO_EXT:sequence_altered_entity denotes mutants
T12415 6876-6881 PR_EXT:000009218 denotes Ptdsr
T12416 6890-6921 GO:0043277 denotes phagocytosis of apoptotic cells
T12417 6906-6921 CL:0000445 denotes apoptotic cells
T12418 6916-6921 CL_GO_EXT:cell denotes cells
T12419 6947-6952 PR_EXT:000009218 denotes Ptdsr
T12420 6953-6961 GO:0042571 denotes antibody
T12421 6985-6993 GO:0042571 denotes antibody
T12422 7006-7011 PR_EXT:000009218 denotes Ptdsr
T12423 7012-7019 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T12424 7060-7071 GO_UBERON_EXT:cellular_component_or_cell_part denotes subcellular
T12425 7063-7071 CL_GO_EXT:cell denotes cellular
T12426 7072-7084 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T12427 7127-7132 PR_EXT:000009218 denotes Ptdsr
T12428 7143-7151 GO:0016020 denotes membrane
T12429 7152-7160 GO_EXT:0004872 denotes receptor
T12430 7174-7193 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signal transduction
T12431 7252-7259 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T12432 7284-7289 NCBITaxon:9606 denotes human
T12433 7294-7298 NCBITaxon_EXT:worm denotes worm
T12434 7299-7304 PR_EXT:000009218 denotes Ptdsr
T12435 7305-7314 CHEBI:36357 denotes molecules
T12436 7329-7347 CHEBI:18303 denotes phosphatidylserine
T12437 7434-7439 PR_EXT:000009218 denotes Ptdsr
T12438 7460-7469 SO_EXT:wild_type_entity_or_quality denotes wild-type
T12439 7474-7479 PR_EXT:000009218 denotes Ptdsr
T12440 7490-7501 CL:0000235 denotes macrophages
T12441 7506-7517 CL:0000057 denotes fibroblasts
T12442 7638-7643 CL_GO_EXT:cell denotes cells
T12443 7652-7661 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T12444 7684-7689 PR_EXT:000009218 denotes Ptdsr
T12445 7690-7697 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T12446 7734-7738 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T12447 7751-7756 PR_EXT:000009218 denotes Ptdsr
T12448 7757-7764 CHEBI_SO_EXT:peptide_or_peptide_region denotes peptide
T12449 7803-7808 PR_EXT:000009218 denotes Ptdsr
T12450 7809-7820 SO_EXT:0000317 denotes cDNA clones
T12451 7852-7860 GO:0042571 denotes antibody
T12452 7907-7915 GO:0016020 denotes membrane
T12453 7927-7937 CHEBI_PR_EXT:protein denotes protein(s)
T12454 8011-8019 GO:0042571 denotes antibody
R7018 T12319 T12318 _lexicallyChainedTo macrophages,elicited
R7019 T12336 T12335 _lexicallyChainedTo of macrophages,activation