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PMC:549712 / 1885-7857 JSONTXT 5 Projects

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Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1027 11-32 GO:0012501 denotes Programmed cell death
T1028 22-26 CL_GO_EXT:cell denotes cell
T1029 37-46 GO:0006915 denotes apoptosis
T1030 75-89 _FRAGMENT denotes development of
T1031 101-124 GO:0007275 denotes multicellular organisms
T1032 101-124 UBERON:0000468 denotes multicellular organisms
T1033 106-114 CL_GO_EXT:cell denotes cellular
T1034 115-124 NCBITaxon:1 denotes organisms
T1035 134-147 GO_PATO_EXT:physiological_process_or_quality denotes physiological
T1036 162-173 GO:0065007 denotes controlling
T1037 174-178 CL_GO_EXT:cell denotes cell
T1038 281-286 CL_GO_EXT:cell denotes cells
T1039 291-301 GO_EXT:killing denotes eliminated
T1040 321-326 CL_GO_EXT:cell denotes cells
T1041 343-352 NCBITaxon:40674 denotes mammalian
T1042 353-362 UBERON:0000922 denotes embryonic
T1043 353-374 GO:0009790 denotes embryonic development
T1044 383-396 GO_PATO_EXT:physiological_process_or_quality denotes physiological
T1045 397-401 CL_GO_EXT:cell denotes cell
T1046 397-407 GO:0008219 denotes cell death
T1047 430-446 UBERON:0012101 denotes perinatal period
T1048 434-439 GO:0007567 denotes natal
T1049 452-461 GO_PATO_EXT:apoptotic_process_or_quality denotes Apoptotic
T1050 452-467 CL:0000445 denotes Apoptotic cells
T1051 462-467 CL_GO_EXT:cell denotes cells
T1052 514-519 CL_GO_EXT:cell denotes cells
T1053 523-532 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1054 556-566 CL:0000234 denotes phagocytes
T1055 585-590 CL_GO_EXT:cell denotes cells
T1056 604-613 GO:0065007 denotes regulated
T1057 635-642 GO_EXT:biological_release denotes release
T1058 669-680 CHEBI_EXT:60816 denotes immunogenic
T1059 681-694 GO:0005622 denotes intracellular
T1060 686-694 CL_GO_EXT:cell denotes cellular
T1061 738-743 GO:0016265 denotes dying
T1062 744-749 CL_GO_EXT:cell denotes cells
T1063 765-773 UBERON:0000104 denotes lifespan
T1064 780-788 NCBITaxon:1 denotes organism
T1065 796-827 GO:0043277 denotes Phagocytosis of apoptotic cells
T1066 812-827 CL:0000445 denotes apoptotic cells
T1067 822-827 CL_GO_EXT:cell denotes cells
T1068 947-976 GO:0043652 denotes engulfment of apoptotic cells
T1069 961-976 CL:0000445 denotes apoptotic cells
T1070 971-976 CL_GO_EXT:cell denotes cells
T1071 990-999 GO_EXT:secretion_entity_or_process denotes secretion
T1072 1010-1027 _FRAGMENT denotes anti-inflammatory
T1074 1015-1027 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1075 1032-1059 CHEBI_EXT:35705 denotes immunosuppressive mediators
T1073 1050-1059 CHEBI_EXT:67079 denotes mediators
T1076 1101-1108 GO_EXT:biological_release denotes release
T1077 1116-1128 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1078 1153-1157 CL_GO_EXT:cell denotes cell
T1079 1179-1186 GO_EXT:reaction_or_response denotes respond
T1080 1202-1211 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1081 1202-1217 CL:0000445 denotes apoptotic cells
T1082 1212-1217 CL_GO_EXT:cell denotes cells
T1083 1244-1254 GO:0006909 denotes phagocytic
T1084 1255-1264 GO_EXT:0004872 denotes receptors
T1085 1270-1274 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T1086 1287-1294 CHEBI_GO_EXT:ligand denotes ligands
T1087 1298-1307 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1088 1298-1313 CL:0000445 denotes apoptotic cells
T1089 1308-1313 CL_GO_EXT:cell denotes cells
T1090 1324-1331 SO_EXT:0000704 denotes genetic
T1091 1343-1353 NCBITaxon:7215 denotes Drosophila
T1092 1358-1380 NCBITaxon:6239 denotes Caenorhabditis elegans
T1093 1423-1433 GO:0006909 denotes phagocytic
T1094 1482-1511 GO:0043652 denotes engulfment of apoptotic cells
T1095 1496-1511 CL:0000445 denotes apoptotic cells
T1096 1506-1511 CL_GO_EXT:cell denotes cells
T1097 1523-1532 SO_EXT:biological_conservation_process_or_quality denotes conserved
T1098 1564-1575 NCBITaxon:7742 denotes vertebrates
T1099 1589-1598 GO_EXT:0004872 denotes receptors
T1100 1637-1668 GO:0043277 denotes phagocytosis of apoptotic cells
T1101 1653-1668 CL:0000445 denotes apoptotic cells
T1102 1663-1668 CL_GO_EXT:cell denotes cells
T1103 1698-1717 GO_EXT:0005044 denotes scavenger receptors
T1104 1722-1751 GO_EXT:0038187 denotes pattern recognition receptors
T1105 1760-1764 PR_EXT:000001905 denotes CD36
T1106 1766-1770 PR_EXT:000001885 denotes SR-A
T1107 1775-1779 PR_EXT:000001889 denotes CD14
T1108 1781-1790 GO_PR_EXT:integrin denotes integrins
T1109 1815-1823 GO_EXT:0004872 denotes receptor
T1110 1824-1828 GO:0034683 denotes αvβ3
T1111 1876-1885 GO_EXT:0004872 denotes receptors
T1112 1886-1890 PR_EXT:000002058 denotes CD91
T1113 1895-1907 PR_EXT:000004984 denotes calreticulin
T1114 1946-1955 CHEBI:36357 denotes molecules
T1115 1959-1966 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1116 1968-1980 GO:0006909 denotes phagocytosis
T1117 1984-1999 _FRAGMENT denotes transduction of
T1119 2005-2017 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1118 2018-2025 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signals
T1120 2031-2040 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1121 2031-2045 CL:0000445 denotes apoptotic cell
T1122 2041-2045 CL_GO_EXT:cell denotes cell
T1123 2147-2161 CL:0000445 denotes apoptotic cell
T1124 2147-2171 GO:0043277 denotes apoptotic cell clearance
T1125 2157-2161 CL_GO_EXT:cell denotes cell
T1126 2221-2227 UBERON:0002405 denotes immune
T1127 2228-2237 GO_EXT:reaction_or_response denotes responses
T1128 2257-2261 NCBITaxon:10088 denotes mice
T1129 2271-2280 CHEBI:36357 denotes molecules
T1130 2285-2299 CL:0000445 denotes apoptotic cell
T1131 2285-2299 _FRAGMENT denotes apoptotic cell
T1133 2295-2299 CL_GO_EXT:cell denotes cell
T1132 2316-2322 GO:0043652 denotes uptake
T1134 2372-2376 NCBITaxon:10088 denotes mice
T1135 2400-2407 CHEBI_PR_EXT:protein denotes protein
T1136 2422-2426 NCBITaxon:10088 denotes mice
T1137 2434-2442 SO_EXT:sequence_alteration_entity_or_process denotes mutation
T1138 2450-2458 CHEBI_SO_EXT:tyrosine denotes tyrosine
T1139 2450-2474 GO_EXT:0004714 denotes tyrosine kinase receptor
T1140 2475-2479 SO_EXT:0000704 denotes gene
T1141 2480-2483 PR_EXT:000010329 denotes Mer
T1142 2512-2516 NCBITaxon:10088 denotes mice
T1143 2525-2541 GO_EXT:0003810 denotes transglutaminase
T1144 2525-2543 PR_EXT:000016293 denotes transglutaminase 2
T1145 2547-2589 PR_EXT:000010367 denotes milk fat globule epidermal growth factor 8
T1146 2552-2555 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1147 2564-2573 UBERON:0007376 denotes epidermal
T1148 2574-2580 GO_EXT:biological_growth_entity_or_process denotes growth
T1149 2574-2587 GO_EXT:0008083 denotes growth factor
T1150 2591-2597 PR_EXT:000010367 denotes MFG-E8
T1151 2628-2640 CHEBI:16247 denotes phospholipid
T1152 2641-2659 CHEBI:18303 denotes phosphatidylserine
T1153 2661-2663 CHEBI:18303 denotes PS
T1154 2693-2708 GO:0005886 denotes plasma membrane
T1155 2712-2721 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1156 2712-2727 CL:0000445 denotes apoptotic cells
T1157 2722-2727 CL_GO_EXT:cell denotes cells
T1158 2791-2800 GO:0006915 denotes apoptosis
T1159 2872-2886 CL:0000445 denotes apoptotic cell
T1160 2872-2886 _FRAGMENT denotes apoptotic cell
T1162 2882-2886 CL_GO_EXT:cell denotes cell
T1161 2903-2910 GO:0043277 denotes removal
T1163 2929-2933 CL_GO_EXT:cell denotes cell
T1164 2929-2941 GO:0009986 denotes cell-surface
T1165 2946-2954 GO:0030674 denotes bridging
T1166 2955-2964 CHEBI:36357 denotes molecules
T1167 2991-2993 CHEBI:18303 denotes PS
T1168 2997-3006 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1169 2997-3012 CL:0000445 denotes apoptotic cells
T1170 3007-3012 CL_GO_EXT:cell denotes cells
T1171 3032-3037 UBERON:0001977 denotes serum
T1172 3038-3046 CHEBI_PR_EXT:protein denotes proteins
T1173 3047-3064 PR_EXT:000004157 denotes β2-glycoprotein 1
T1174 3050-3062 CHEBI:17089 denotes glycoprotein
T1175 3069-3076 CHEBI_PR_EXT:protein denotes protein
T1176 3069-3078 PR_EXT:000013269 denotes protein S
T1177 3092-3098 GO_EXT:biological_growth_entity_or_process denotes growth
T1178 3115-3127 SO_EXT:gene_product denotes gene product
T1179 3128-3133 PR_EXT:000007853 denotes GAS-6
T1180 3140-3161 GO:0006956 denotes complement activation
T1181 3186-3189 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1182 3198-3205 CHEBI_PR_EXT:protein denotes protein
T1183 3206-3212 PR_EXT:000010367 denotes MFG-E8
T1184 3223-3232 PR_EXT:000004071 denotes annexin I
T1185 3257-3266 GO_EXT:0004872 denotes receptors
T1186 3270-3280 CL:0000234 denotes phagocytes
T1187 3302-3304 CHEBI:18303 denotes PS
T1188 3305-3313 GO:0030674 denotes bridging
T1189 3314-3323 CHEBI:36357 denotes molecules
T1190 3377-3382 PR_EXT:000007853 denotes GAS-6
T1191 3388-3394 CHEBI_GO_EXT:ligand denotes ligand
T1192 3403-3411 CHEBI_SO_EXT:tyrosine denotes tyrosine
T1193 3403-3427 GO_EXT:0004714 denotes tyrosine kinase receptor
T1194 3428-3431 PR_EXT:000010329 denotes Mer
T1195 3441-3447 PR_EXT:000010367 denotes MFG-E8
T1196 3452-3456 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T1197 3476-3484 GO_EXT:0004872 denotes receptor
T1198 3485-3489 GO:0034683 denotes αvβ3
T1199 3505-3514 CHEBI:36357 denotes molecules
T1200 3520-3524 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes bind
T1201 3525-3527 CHEBI:18303 denotes PS
T1202 3561-3616 PR_EXT:000011634 denotes lectin-like oxidized low-density lipoprotein receptor-1
T1203 3573-3581 MOP:0000568 denotes oxidized
T1204 3582-3605 CHEBI_GO_EXT:low_density_lipoprotein_particle denotes low-density lipoprotein
T1205 3582-3614 GO_PR_EXT:low_density_lipoprotein_receptor denotes low-density lipoprotein receptor
T1206 3618-3623 PR_EXT:000011634 denotes LOX-1
T1207 3633-3652 GO_EXT:0005044 denotes scavenger receptors
T1208 3653-3657 PR_EXT:000001905 denotes CD36
T1209 3662-3666 PR_EXT:000002064 denotes CD68
T1210 3735-3743 CHEBI:36357 denotes molecule
T1211 3756-3761 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T1212 3762-3764 CHEBI:18303 denotes PS
T1213 3800-3818 CHEBI:18303 denotes phosphatidylserine
T1214 3800-3827 PR_EXT:000009218 denotes phosphatidylserine receptor
T1215 3819-3827 GO_EXT:0004872 denotes receptor
T1216 3829-3834 PR_EXT:000009218 denotes Ptdsr
T1217 3879-3884 PR_EXT:000009218 denotes Ptdsr
T1218 3901-3926 GO:0043652 denotes uptake of apoptotic cells
T1219 3911-3926 CL:0000445 denotes apoptotic cells
T1220 3921-3926 CL_GO_EXT:cell denotes cells
T1221 3941-3946 PR_EXT:000009218 denotes Ptdsr
T1222 3956-3968 GO:0006909 denotes phagocytosis
T1223 4006-4008 CHEBI:18303 denotes PS
T1224 4024-4026 CHEBI:18303 denotes PS
T1225 4027-4034 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1226 4035-4043 CHEBI:36357 denotes molecule
T1227 4044-4053 PR_EXT:000004078 denotes annexin V
T1228 4065-4070 PR_EXT:000009218 denotes Ptdsr
T1229 4071-4079 GO:0042571 denotes antibody
T1230 4100-4107 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binding
T1231 4111-4116 PR_EXT:000009218 denotes Ptdsr
T1232 4120-4122 CHEBI:18303 denotes PS
T1233 4126-4135 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1234 4126-4141 CL:0000445 denotes apoptotic cells
T1235 4136-4141 CL_GO_EXT:cell denotes cells
T1236 4184-4191 GO_EXT:biological_release denotes release
T1237 4195-4222 CHEBI_EXT:67079 denotes anti-inflammatory mediators
T1238 4200-4212 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1239 4234-4263 PR_EXT:000000182 denotes transforming growth factor-β1
T1240 4247-4253 GO_EXT:biological_growth_entity_or_process denotes growth
T1241 4247-4260 GO_EXT:0008083 denotes growth factor
T1242 4265-4271 PR_EXT:000000182 denotes TGF-β1
T1243 4274-4282 CL:0000233 denotes platelet
T1244 4274-4293 GO:0030168 denotes platelet-activating
T1245 4274-4300 CHEBI:44811 denotes platelet-activating factor
T1246 4302-4305 CHEBI:44811 denotes PAF
T1247 4312-4328 CHEBI:15551 denotes prostaglandin E2
T1248 4379-4384 PR_EXT:000009218 denotes Ptdsr
T1249 4413-4422 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T1250 4454-4465 CL:0000235 denotes macrophages
T1251 4471-4480 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1252 4471-4486 CL:0000445 denotes apoptotic cells
T1253 4481-4486 CL_GO_EXT:cell denotes cells
T1254 4535-4541 UBERON:0002405 denotes immune
T1255 4535-4551 GO:0006955 denotes immune responses
T1256 4555-4564 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1257 4555-4570 CL:0000445 denotes apoptotic cells
T1258 4565-4570 CL_GO_EXT:cell denotes cells
T1259 4615-4620 PR_EXT:000009218 denotes Ptdsr
T1260 4643-4647 CL_GO_EXT:cell denotes cell
T1261 4643-4655 GO:0005634 denotes cell nucleus
T1262 4661-4668 GO:0005634 denotes nuclear
T1263 4669-4681 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1264 4714-4721 GO:0005634 denotes nuclear
T1265 4714-4742 SO_EXT:0001528 denotes nuclear localization signals
T1266 4722-4734 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1267 4778-4787 GO_EXT:biological_routing_or_transport denotes targeting
T1268 4788-4793 PR_EXT:000009218 denotes Ptdsr
T1269 4801-4805 CL_GO_EXT:cell denotes cell
T1270 4801-4813 GO:0005634 denotes cell nucleus
T1271 4872-4877 NCBITaxon:6083 denotes Hydra
T1272 4900-4907 GO:0005634 denotes nuclear
T1273 4908-4920 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1274 4929-4934 PR_EXT:000009218 denotes Ptdsr
T1275 4935-4942 CHEBI_PR_EXT:protein denotes protein
T1276 4973-4980 GO:0005634 denotes nuclear
T1277 4981-4993 GO_PATO_EXT:biological_localization_process_or_quality denotes localization
T1278 4997-5002 PR_EXT:000009218 denotes Ptdsr
T1279 5006-5011 NCBITaxon:6083 denotes Hydra
T1280 5012-5022 UBERON:0000483 denotes epithelial
T1281 5012-5028 CL:0000066 denotes epithelial cells
T1282 5023-5028 CL_GO_EXT:cell denotes cells
T1283 5049-5080 GO:0043277 denotes phagocytosis of apoptotic cells
T1284 5065-5080 CL:0000445 denotes apoptotic cells
T1285 5075-5080 CL_GO_EXT:cell denotes cells
T1286 5150-5155 PR_EXT:000009218 denotes Ptdsr
T1287 5179-5187 GO:0016020 denotes membrane
T1288 5188-5196 GO_EXT:0004872 denotes receptor
T1289 5201-5210 GO_PATO_EXT:apoptotic_process_or_quality denotes apoptotic
T1290 5201-5215 CL:0000445 denotes apoptotic cell
T1291 5211-5215 CL_GO_EXT:cell denotes cell
T1292 5237-5249 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammatory
T1293 5250-5259 GO_EXT:cell_communication_or_signaling_or_signal_transduction denotes signaling
T1294 5292-5297 PR_EXT:000009218 denotes Ptdsr
T1295 5320-5324 SO_EXT:0000704 denotes gene
T1296 5320-5335 GO:0010467 denotes gene-expression
T1297 5340-5344 SO_EXT:0000704 denotes gene
T1298 5366-5370 NCBITaxon:10088 denotes mice
T1299 5374-5385 UBERON:0012101 denotes perinatally
T1300 5378-5385 GO:0007567 denotes natally
T1301 5386-5392 GO_EXT:fatality_or_lethality denotes lethal
T1302 5419-5424 PR_EXT:000009218 denotes Ptdsr
T1303 5434-5438 NCBITaxon:10088 denotes mice
T1304 5444-5449 PR_EXT:000009218 denotes Ptdsr
T1305 5460-5467 UBERON:0000922 denotes embryos
T1306 5498-5504 UBERON:0000479 denotes tissue
T1307 5509-5514 UBERON:0000062 denotes organ
T1308 5515-5530 GO_RO_EXT:developmental_differentiation_process denotes differentiation
T1309 5674-5679 PR_EXT:000009218 denotes Ptdsr
T1310 5689-5693 NCBITaxon:10088 denotes mice
T1311 5824-5852 GO:0043277 denotes clearance of apoptotic cells
T1312 5837-5852 CL:0000445 denotes apoptotic cells
T1313 5847-5852 CL_GO_EXT:cell denotes cells
T1314 5917-5922 PR_EXT:000009218 denotes Ptdsr
T1315 5933-5937 NCBITaxon:10088 denotes mice
T1316 5962-5971 GO:0006915 denotes apoptosis
R278 T1031 T1030 _lexicallyChainedTo multicellular organisms,development of
R279 T1073 T1072 _lexicallyChainedTo mediators,anti-inflammatory
R280 T1118 T1117 _lexicallyChainedTo signals,transduction of
R281 T1132 T1131 _lexicallyChainedTo uptake,apoptotic cell
R282 T1161 T1160 _lexicallyChainedTo removal,apoptotic cell