PMC:523229 / 50516-60660 JSONTXT 5 Projects

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Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T11192 37-41 PR_EXT:000000281 denotes Gdf5
T11193 46-56 SO_EXT:transgenic_entity denotes transgenic
T11194 57-61 NCBITaxon:10088 denotes mice
T11195 64-69 NCBITaxon:10088 denotes mouse
T11196 80-83 SO_EXT:0000153 denotes BAC
T11197 137-138 CHEBI_SO_EXT:base denotes b
T11198 139-142 SO_EXT:0000153 denotes BAC
T11199 152-156 PR_EXT:000000281 denotes Gdf5
T11200 169-172 SO_EXT:0000153 denotes BAC
T11201 177-185 SO_EXT:sequence_alteration_process denotes modified
T11202 205-218 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11203 229-236 NCBITaxon:562 denotes E. coli
T11204 265-272 GO:0005634 denotes nuclear
T11205 273-282 GO_PATO_EXT:biological_localization_process_or_quality denotes localized
T11206 287-298 GO_EXT:recombinase denotes recombinase
T11207 305-312 SO_EXT:0000155 denotes plasmid
T11208 353-357 SO_EXT:0000243 denotes IRES
T11209 358-363 PR_EXT:P05187 denotes hPLAP
T11210 370-377 SO_EXT:0000155 denotes plasmid
T11211 427-441 SO_EXT:0000318 denotes ATG start site
T11212 445-449 PR_EXT:000000281 denotes Gdf5
T11213 471-473 SO_EXT:0000028 denotes bp
T11214 487-491 SO_EXT:0000147 denotes exon
T11215 495-499 PR_EXT:000000281 denotes Gdf5
T11216 530-534 PR_EXT:000000281 denotes GDF5
T11217 535-542 CHEBI_PR_EXT:protein denotes protein
T11218 613-624 SO_EXT:0000006 denotes PCR product
T11219 654-671 SO_EXT:0000061 denotes restriction sites
T11220 690-692 SO_EXT:0000028 denotes bp
T11221 699-706 SO_EXT:0001026 denotes genomic
T11222 707-711 PR_EXT:000000281 denotes Gdf5
T11223 712-720 SO_EXT:biological_sequence denotes sequence
T11224 735-761 SO_EXT:0000318 denotes ATG translation start site
T11225 739-756 GO:0006413 denotes translation start
T11226 763-777 SO_EXT:0000121 denotes forward primer
T11227 818-825 SO:0001031 denotes reverse
T11228 894-895 CHEBI_SO_EXT:base denotes b
T11229 929-933 SO_EXT:0000243 denotes IRES
T11230 934-939 PR_EXT:P05187 denotes hPLAP
T11231 966-967 CHEBI_SO_EXT:base denotes b
T11232 968-979 SO_EXT:0000006 denotes PCR product
T11233 1031-1036 PR_EXT:P05187 denotes hPLAP
T11234 1037-1053 GO:0006415 denotes translation stop
T11235 1037-1058 SO_EXT:0000319 denotes translation stop site
T11236 1060-1074 SO_EXT:0000121 denotes forward primer
T11237 1121-1128 SO:0001031 denotes reverse
T11238 1222-1223 CHEBI_SO_EXT:base denotes b
T11239 1224-1235 SO_EXT:0000006 denotes PCR product
T11240 1258-1259 CHEBI_SO_EXT:base denotes b
T11241 1265-1269 PR_EXT:000000281 denotes Gdf5
T11242 1270-1277 SO_EXT:0001026 denotes genomic
T11243 1298-1305 _FRAGMENT denotes part of
T11244 1316-1320 SO_EXT:0000852 denotes exon
T11246 1325-1335 SO_EXT:sequence_downstreamness denotes downstream
T11245 1336-1342 SO_EXT:0001014 denotes intron
T11247 1348-1362 SO_EXT:0000121 denotes forward primer
T11248 1396-1400 SO_EXT:0000147 denotes exon
T11249 1437-1451 SO_EXT:0000132 denotes reverse primer
T11250 1464-1466 NCBITaxon:10760 denotes T7
T11251 1467-1475 SO_EXT:0000167 denotes promoter
T11252 1483-1489 SO_EXT:0000440 denotes vector
T11253 1510-1511 CHEBI_SO_EXT:base denotes b
T11254 1525-1531 SO:0000357 denotes flanks
T11255 1536-1544 SO_EXT:0000188 denotes intronic
T11256 1556-1570 SO_EXT:0000121 denotes forward primer
T11257 1610-1617 SO:0001031 denotes reverse
T11258 1673-1682 SO_EXT:engineered_biological_sequence denotes construct
T11259 1819-1825 SO_EXT:0000440 denotes vector
T11260 1846-1859 GO_SO_EXT:sequence_rearrangement_process denotes recombination
T11261 1908-1911 CHEBI_SO_EXT:DNA denotes DNA
T11262 1912-1920 SO_EXT:biological_sequence denotes sequence
T11263 1966-1975 SO_EXT:engineered_biological_sequence denotes construct
T11264 1980-1983 SO_EXT:0000153 denotes BAC
T11265 1984-1997 SO_EXT:sequence_alteration_entity_or_process denotes modifications
T11266 2039-2047 SO_EXT:sequence_alteration_process denotes modified
T11267 2048-2051 SO_EXT:0000153 denotes BAC
T11268 2076-2086 SO_EXT:transgenic_entity denotes transgenic
T11269 2087-2094 NCBITaxon:33208 denotes animals
T11270 2098-2107 SO_EXT:0000346 denotes loxP site
T11271 2123-2133 SO_EXT:0000153 denotes BAC vector
T11272 2222-2228 SO_EXT:0001026 denotes genome
T11273 2242-2245 SO_EXT:0000153 denotes BAC
T11274 2246-2249 CHEBI_SO_EXT:DNA denotes DNA
T11275 2266-2270 CHEBI:63039 denotes CsCl
T11276 2314-2320 SO_EXT:0000667 denotes insert
T11277 2330-2336 SO_EXT:0000440 denotes vector
T11278 2367-2374 CHEBI:17992 denotes sucrose
T11279 2464-2470 SO_EXT:0000440 denotes vector
T11280 2480-2483 CHEBI_SO_EXT:DNA denotes DNA
T11281 2489-2494 CHEBI_SO_EXT:molecular_probe denotes probe
T11282 2527-2533 SO_EXT:0000667 denotes insert
T11283 2559-2565 SO_EXT:0000440 denotes vector
T11284 2566-2569 CHEBI_SO_EXT:DNA denotes DNA
T11285 2602-2608 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T11286 2616-2620 CHEBI:9754 denotes Tris
T11287 2643-2647 CHEBI_EXT:EDTA denotes EDTA
T11288 2760-2766 SO_EXT:0000667 denotes insert
T11289 2767-2770 CHEBI_SO_EXT:DNA denotes DNA
T11290 2817-2827 GO:0045120 denotes pronucleus
T11291 2831-2841 GO:0009566 denotes fertilized
T11292 2842-2846 CL:0000025 denotes eggs
T11293 2858-2862 NCBITaxon:10088 denotes mice
T11294 2879-2889 SO_EXT:transgenic_entity denotes Transgenic
T11295 2900-2910 SO_EXT:transgenic_entity denotes Transgenic
T11296 2919-2923 NCBITaxon:10088 denotes mice
T11297 2966-2973 SO_EXT:0000112 denotes primers
T11298 3065-3067 SO_EXT:0000028 denotes bp
T11299 3110-3120 SO_EXT:0000153 denotes BAC vector
T11300 3127-3133 SO_EXT:0000440 denotes vector
T11301 3143-3150 SO_EXT:0000112 denotes primers
T11302 3237-3239 SO_EXT:0000028 denotes bp
T11303 3264-3268 PR_EXT:000000281 denotes Gdf5
T11304 3273-3277 NCBITaxon:10088 denotes mice
T11305 3333-3340 GO:0007618 denotes Matings
T11306 3365-3369 PR_EXT:000033987 denotes LACZ
T11307 3379-3383 NCBITaxon:10088 denotes mice
T11308 3448-3452 PR_EXT:000033987 denotes LACZ
T11309 3457-3462 PR_EXT:P05187 denotes HPLAP
T11310 3472-3479 UBERON:0000922 denotes embryos
T11311 3495-3502 UBERON:0000922 denotes embryos
T11312 3580-3584 PR_EXT:000033987 denotes LACZ
T12130 3750-3756 PR_EXT:000000035 denotes Bmpr1a
T12131 3757-3763 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12132 3764-3768 NCBITaxon:10088 denotes mice
T12133 3769-3775 PR_EXT:000000035 denotes Bmpr1a
T12134 3776-3780 SO_EXT:sequence_nullness denotes null
T12135 3785-3791 SO:0000359 denotes floxed
T12136 3792-3799 SO_EXT:0001023 denotes alleles
T12137 3916-3924 GO_EXT:breeding denotes breeding
T12138 3926-3930 NCBITaxon:10088 denotes Mice
T12139 3944-3948 SO_EXT:sequence_nullness denotes null
T12140 3953-3959 SO:0000359 denotes floxed
T12141 3960-3967 SO_EXT:0001023 denotes alleles
T12142 3983-3988 GO:0007618 denotes mated
T12143 3992-3996 PR_EXT:000000281 denotes Gdf5
T12144 4001-4005 NCBITaxon:10088 denotes mice
T12145 4042-4046 NCBITaxon:10088 denotes mice
T12146 4117-4123 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12147 4124-4131 NCBITaxon:33208 denotes animals
T12148 4171-4178 GO:0007618 denotes matings
T12149 4192-4200 UBERON:0004288 denotes skeletal
T12150 4245-4249 NCBITaxon:10088 denotes mice
T12151 4281-4285 UBERON:0001690 denotes ears
T12152 4311-4318 NCBITaxon:33208 denotes animals
T12153 4425-4431 UBERON:0010887 denotes tragus
T12154 4436-4446 UBERON:0016467 denotes antitragus
T12155 4488-4494 UBERON:0001757 denotes pinnae
T12156 4525-4529 NCBITaxon:10088 denotes mice
T12157 4554-4561 NCBITaxon:33208 denotes animals
T12158 4718-4723 NCBITaxon:10088 denotes mouse
T12159 4748-4754 GO_EXT:biological_movement_or_translocation_process denotes motion
T12160 4784-4786 UBERON:0001448 denotes MT
T12161 4787-4789 UBERON:0004302 denotes P1
T12162 4794-4796 UBERON:0004302 denotes P1
T12163 4797-4799 UBERON:4100005 denotes P2
T12164 4800-4806 UBERON:0004905 denotes joints
T12165 4814-4835 UBERON:0003632 denotes second hindlimb digit
T12166 4862-4869 NCBITaxon:33208 denotes animals
T12167 4901-4906 UBERON:0004905 denotes joint
T12168 5093-5100 NCBITaxon:33208 denotes animals
T12169 5123-5127 NCBITaxon:10088 denotes mice
T12170 5144-5150 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12171 5151-5160 SO_EXT:genotype_or_entity_with_genotype denotes genotypes
T12172 5206-5210 PR_EXT:000000281 denotes Gdf5
T12173 5219-5225 PR_EXT:000000035 denotes Bmpr1a
T12174 5225-5229 SO_EXT:sequence_nullness denotes null
T12175 5266-5272 PR_EXT:000000035 denotes Bmpr1a
T12176 5272-5277 SO:0000359 denotes floxP
T12602 5422-5426 CL_GO_EXT:cell denotes Cell
T12604 5422-5426 _FRAGMENT denotes Cell
T12603 5422-5432 GO:0008219 denotes Cell death
T12605 5437-5450 GO:0008283 denotes proliferation
T12606 5458-5463 UBERON:0002101 denotes Limbs
T12607 5469-5475 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12608 5488-5495 NCBITaxon:33208 denotes animals
T12609 5610-5616 UBERON:0000479 denotes tissue
T12610 5657-5661 CL_GO_EXT:cell denotes Cell
T12611 5657-5667 GO:0008219 denotes Cell Death
T12612 5683-5694 CHEBI:31624 denotes Fluorescein
T12613 5793-5801 CHEBI:53424 denotes Tween-20
T12614 5807-5811 NCBITaxon:9925 denotes goat
T12615 5812-5817 UBERON:0001977 denotes serum
T12616 5874-5880 NCBITaxon:9986 denotes rabbit
T12617 5886-5893 CHEBI:32958 denotes phospho
T12618 5894-5901 CHEBI:15358 denotes histone
T12619 5894-5904 PR_EXT:000027594 denotes histone-H3
T12620 5905-5913 GO:0042571 denotes antibody
T12621 5921-5928 GO:0007067 denotes Mitosis
T12622 5929-5935 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes Marker
T12623 6010-6015 CL_GO_EXT:cell denotes cells
T12624 6019-6026 GO:0007067 denotes mitosis
T12625 6028-6031 CHEBI:37987 denotes Cy3
T12626 6032-6039 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12601 6045-6051 NCBITaxon:9986 denotes rabbit
T12627 6062-6070 GO:0042571 denotes antibody
T12628 6094-6102 GO:0042571 denotes antibody
T12629 6104-6108 CL_GO_EXT:cell denotes Cell
T12630 6104-6115 GO:0005634 denotes Cell nuclei
T12631 6121-6128 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12632 6134-6138 CHEBI:51231 denotes DAPI
T12633 6298-6308 UBERON:0001062 denotes anatomical
T12634 6354-6361 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12635 6362-6369 GO:0005634 denotes nuclear
T12636 6398-6401 CHEBI:37987 denotes Cy3
T12637 6402-6409 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12638 6410-6416 GO:0005634 denotes nuclei
T12639 6501-6507 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T12640 6508-6515 NCBITaxon:33208 denotes animals
T12641 6531-6538 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T12642 6539-6544 CL_GO_EXT:cell denotes cells
T12643 6552-6573 _FRAGMENT denotes metacarpal-phalangeal
T12645 6578-6606 UBERON:0003696 denotes metatarsal-phalangeal joints
T12644 6600-6606 UBERON:0003695 denotes joints
T12646 6682-6687 UBERON:0004905 denotes joint
T12647 6717-6728 UBERON:0006052 denotes fifth digit
T12648 6768-6774 _FRAGMENT denotes tip of
T12649 6779-6784 UBERON:0009551 denotes digit
T12650 6836-6842 UBERON:0000479 denotes tissue
T13056 6932-6938 UBERON:0000479 denotes Tissue
T13057 6944-6951 NCBITaxon:33208 denotes animals
T13058 7027-7043 CHEBI_EXT:paraformaldehye denotes paraformaldehyde
T13059 7045-7048 CHEBI_EXT:paraformaldehye denotes PFA
T13060 7145-7152 CHEBI:17992 denotes sucrose
T13061 7184-7191 CHEBI:17992 denotes sucrose
T13062 7263-7269 UBERON:0000479 denotes Tissue
T13063 7275-7282 NCBITaxon:33208 denotes animals
T13064 7283-7287 GO_PATO_EXT:aging_or_agedness denotes aged
T13065 7383-7387 CHEBI_EXT:EDTA denotes EDTA
T13066 7428-7435 CHEBI:17992 denotes sucrose
T13067 7441-7450 CHEBI:75958 denotes solutions
T13068 7504-7508 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T13069 7514-7521 UBERON:0000479 denotes tissues
T13070 7537-7541 NCBITaxon:10088 denotes mice
T13071 7588-7594 UBERON:0000479 denotes Tissue
T13072 7680-7690 CHEBI:82468 denotes Fast Green
T13073 7704-7715 CHEBI:51686 denotes hematoxylin
T13074 7785-7789 PR_EXT:000033987 denotes LACZ
T13075 7804-7809 CHEBI:75055 denotes X-Gal
T13076 7891-7894 CHEBI_EXT:paraformaldehye denotes PFA
T13077 7919-7924 CHEBI:15377 denotes water
T13078 7947-7954 GO:0005634 denotes Nuclear
T13079 7992-7997 CHEBI:15377 denotes water
T13080 8092-8095 CHEBI_SO_EXT:RNA denotes RNA
T13081 8104-8117 GO:0097617 denotes hybridization
T13082 8223-8234 MOP:0000030 denotes acetylation
T13083 8282-8292 GO_EXT:0008233 denotes proteinase
T13084 8400-8403 CHEBI_EXT:paraformaldehye denotes PFA
T13085 8443-8456 GO:0097617 denotes hybridization
T13086 8483-8499 UBERON:0005291 denotes embryonic tissue
T13087 8544-8547 CHEBI:60004 denotes mix
T13088 8568-8574 CHEBI_SO_EXT:molecular_probe denotes Probes
T13089 8593-8598 SO_EXT:0000704 denotes genes
T13090 8631-8637 PR_EXT:000000035 denotes Bmpr1a
T13091 8661-8667 PR_EXT:000003266 denotes Col2a1
T13092 8694-8701 PR_EXT:000005693 denotes Col10a1
T13093 8722-8726 PR_EXT:000000281 denotes Gdf5
T13094 8754-8765 PR_EXT:000030444 denotes Osteocalcin
T13095 8793-8797 PR_EXT:000015431 denotes Sox5
T13096 8802-8806 PR_EXT:000015432 denotes Sox6
T13097 8845-8850 CHEBI_SO_EXT:molecular_probe denotes probe
T13098 8873-8876 PR_EXT:000003606 denotes Agg
T13099 8895-8903 OBI_SO_EXT:gene_or_genetic_investigation_or_genetic_process denotes Genetics
T13100 8915-8919 PR_EXT:000000164 denotes Bmp2
T13101 8924-8928 PR_EXT:000000165 denotes Bmp4
T13102 8964-8970 PR_EXT:000003264 denotes Col1a1
T13103 9009-9015 PR_EXT:000000036 denotes Bmpr1b
T13104 9017-9023 PR_EXT:000003328 denotes Col3a1
T13105 9029-9033 PR_EXT:000010208 denotes Mat4
T13106 9034-9040 CHEBI_SO_EXT:molecular_probe denotes probes
T13107 9056-9060 SO_EXT:0000345 denotes ESTs
T13108 9072-9077 SO_EXT:sequence_cloned_entity denotes clone
T13109 9230-9233 CHEBI_EXT:paraformaldehye denotes PFA
T13110 9279-9285 NCBITaxon:27592 denotes bovine
T13111 9460-9477 CHEBI:16240 denotes hydrogen peroxide
T13112 9486-9494 CHEBI:17790 denotes methanol
T13113 9540-9547 CHEBI:53424 denotes Tween20
T13114 9553-9557 NCBITaxon:9925 denotes goat
T13115 9567-9573 NCBITaxon:27592 denotes bovine
T13116 9574-9579 UBERON:0001977 denotes serum
T13117 9622-9632 GO:0042571 denotes antibodies
T13118 9648-9656 CHEBI:53424 denotes Tween 20
T13119 9662-9666 NCBITaxon:9925 denotes goat
T13120 9676-9682 NCBITaxon:27592 denotes bovine
T13121 9683-9688 UBERON:0001977 denotes serum
T13122 9708-9714 CHEBI:15956 denotes Biotin
T13123 9715-9722 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes labeled
T13124 9733-9743 GO:0042571 denotes antibodies
T13125 9763-9769 CHEBI_SO_EXT:molecular_label_or_mark_or_tag_process denotes tagged
T13126 9882-9892 GO:0042571 denotes antibodies
T13127 9918-9922 NCBITaxon:9925 denotes goat
T13128 9928-9933 NCBITaxon:10088 denotes mouse
T13129 9934-9939 PR_EXT:000010473 denotes MMP13
T13130 10010-10016 NCBITaxon:9986 denotes rabbit
T13131 10022-10027 NCBITaxon:9606 denotes human
T13132 10028-10032 PR_EXT:000015435 denotes SOX9
T13133 10071-10077 NCBITaxon:9986 denotes rabbit
T13134 10083-10097 GO_PATO_EXT:phosphorylation_process_or_quality denotes phosphorylated
T13135 10098-10102 PR_EXT:000015435 denotes SOX9
T13136 10104-10108 PR_EXT:000015435 denotes SOX9
R7264 T11244 T11243 _lexicallyChainedTo exon,part of
R7265 T11245 T11243 _lexicallyChainedTo intron,part of
R8316 T12605 T12604 _lexicallyChainedTo proliferation,Cell
R8317 T12644 T12643 _lexicallyChainedTo joints,metacarpal-phalangeal
R8318 T12649 T12648 _lexicallyChainedTo digit,tip of