Id |
Subject |
Object |
Predicate |
Lexical cue |
Negation |
T731 |
0-32 |
Protein |
denotes |
The Transcription Factor C/EBP-β |
|
T758 |
59-105 |
Transcription |
denotes |
LPS-Inducible Transcription of Murine SerpinB2 |
|
T749 |
87-105 |
Protein |
denotes |
of Murine SerpinB2 |
|
T740 |
156-214 |
Protein |
denotes |
SerpinB2 or plasminogen activator inhibitor type 2 (PAI-2) |
|
T744 |
168-214 |
Protein |
denotes |
plasminogen activator inhibitor type 2 (PAI-2) |
|
T739 |
208-213 |
Protein |
denotes |
PAI-2 |
|
T723 |
236-247 |
Entity |
denotes |
macrophages |
|
T705 |
336-346 |
Entity |
denotes |
macrophage |
|
T733 |
372-397 |
Entity |
denotes |
of plasminogen activators |
|
T745 |
375-386 |
Protein |
denotes |
plasminogen |
|
T709 |
399-424 |
Entity |
denotes |
Lipopolysaccharide (LPS), |
|
T750 |
419-422 |
Entity |
denotes |
LPS |
|
T711 |
444-453 |
Entity |
denotes |
endotoxin |
|
T748 |
466-474 |
Protein |
denotes |
SerpinB2 |
|
T759 |
466-485 |
Gene_expression |
denotes |
SerpinB2 expression |
|
T714 |
490-521 |
Protein |
denotes |
the toll-like receptor 4 (TLR4) |
|
T715 |
516-520 |
Protein |
denotes |
TLR4 |
|
T760 |
553-581 |
Localization |
denotes |
24 hrs in murine macrophages |
|
T719 |
553-581 |
Protein |
denotes |
24 hrs in murine macrophages |
|
T724 |
563-581 |
Entity |
denotes |
murine macrophages |
|
T729 |
590-634 |
Entity |
denotes |
the LPS-regulated SerpinB2 promoter regions, |
|
T741 |
594-607 |
Entity |
denotes |
LPS-regulated |
|
T720 |
608-616 |
Protein |
denotes |
SerpinB2 |
|
T743 |
709-736 |
Protein |
denotes |
of the murine SerpinB2 gene |
|
T753 |
723-731 |
Protein |
denotes |
SerpinB2 |
|
T726 |
771-789 |
Entity |
denotes |
murine macrophages |
|
T722 |
820-823 |
Entity |
denotes |
DNA |
|
T751 |
886-903 |
Protein |
denotes |
of the human gene |
|
T761 |
1007-1057 |
Binding |
denotes |
the human SERPINB2 promoter conserved in the mouse |
|
T738 |
1007-1057 |
Entity |
denotes |
the human SERPINB2 promoter conserved in the mouse |
|
T752 |
1017-1025 |
Protein |
denotes |
SERPINB2 |
|
T725 |
1117-1122 |
Protein |
denotes |
C/EBP |
|
T707 |
1142-1145 |
Entity |
denotes |
AMP |
|
T716 |
1164-1167 |
Protein |
denotes |
CRE |
|
T732 |
1173-1186 |
Entity |
denotes |
two activator |
|
T742 |
1187-1203 |
Protein |
denotes |
protein 1 (AP-1) |
|
T747 |
1198-1202 |
Protein |
denotes |
AP-1 |
|
T713 |
1225-1262 |
Entity |
denotes |
the murine SerpinB2 proximal promoter |
|
T728 |
1236-1244 |
Protein |
denotes |
SerpinB2 |
|
T730 |
1277-1305 |
Entity |
denotes |
for optimal LPS-inducibility |
|
T746 |
1349-1358 |
Entity |
denotes |
chromatin |
|
T735 |
1411-1414 |
Entity |
denotes |
LPS |
|
T757 |
1423-1495 |
Gene_expression |
denotes |
the formation of C/EBP-β containing complexes with the SerpinB2 promoter |
|
T718 |
1437-1495 |
Protein |
denotes |
of C/EBP-β containing complexes with the SerpinB2 promoter |
|
T737 |
1459-1495 |
Entity |
denotes |
complexes with the SerpinB2 promoter |
|
T754 |
1474-1495 |
Entity |
denotes |
the SerpinB2 promoter |
|
T710 |
1478-1486 |
Protein |
denotes |
SerpinB2 |
|
T736 |
1532-1543 |
Entity |
denotes |
LPS-induced |
|
T717 |
1544-1552 |
Protein |
denotes |
SerpinB2 |
|
T712 |
1590-1597 |
Protein |
denotes |
C/EBP-β |
|
T708 |
1609-1637 |
Entity |
denotes |
embryonic fibroblasts (MEFs) |
|
T721 |
1632-1636 |
Protein |
denotes |
MEFs |
|
T734 |
1642-1690 |
Entity |
denotes |
primary C/EBP-β-deficient peritoneal macrophages |
|
T706 |
1738-1755 |
Protein |
denotes |
C/EBP-β-dependent |
|
T755 |
1738-1813 |
Regulation |
denotes |
C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression |
|
T762 |
1738-1813 |
Regulation |
denotes |
C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression |
|
T756 |
1767-1813 |
Gene_expression |
denotes |
of inflammation-associated SerpinB2 expression |
|
T727 |
1794-1802 |
Protein |
denotes |
SerpinB2 |
|
T2430 |
1930-1950 |
Entity |
denotes |
of foreign molecules |
|
T2448 |
2150-2159 |
Protein |
denotes |
cytokines |
|
T2456 |
2164-2193 |
Protein |
denotes |
other inducible gene products |
|
T2375 |
2204-2218 |
Entity |
denotes |
by macrophages |
|
T2409 |
2236-2287 |
Entity |
denotes |
the gram-negative bacterial cell wall component LPS |
|
T2386 |
2264-2273 |
Entity |
denotes |
cell wall |
|
T2428 |
2292-2303 |
Entity |
denotes |
macrophages |
|
T2396 |
2503-2506 |
Entity |
denotes |
LPS |
|
T2432 |
2507-2547 |
Protein |
denotes |
inducible macrophage gene products known |
|
T2394 |
2517-2527 |
Entity |
denotes |
macrophage |
|
T2392 |
2551-2617 |
Protein |
denotes |
the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, |
|
T2387 |
2551-2617 |
Protein |
denotes |
the ovalbumin-like serine protease inhibitor (ov-serpin) SerpinB2, |
|
T2453 |
2570-2576 |
Entity |
denotes |
serine |
|
T2389 |
2586-2607 |
Entity |
denotes |
inhibitor (ov-serpin) |
|
T2379 |
2597-2606 |
Protein |
denotes |
ov-serpin |
|
T2418 |
2638-2648 |
Entity |
denotes |
macrophage |
|
T2416 |
2675-2683 |
Protein |
denotes |
SerpinB2 |
|
T2417 |
2711-2769 |
Entity |
denotes |
inhibitor of urokinase-type plasminogen activator (uPA)[6] |
|
T2401 |
2724-2766 |
Protein |
denotes |
urokinase-type plasminogen activator (uPA) |
|
T2438 |
2762-2765 |
Protein |
denotes |
uPA |
|
T2458 |
2777-2783 |
Entity |
denotes |
serine |
|
T2463 |
2777-2903 |
Protein |
denotes |
serine protease involved in the degradation and turnover of the extracellular matrix through the activation of plasminogen [7] |
|
T2462 |
2837-2861 |
Entity |
denotes |
the extracellular matrix |
|
T2469 |
2870-2899 |
Positive_regulation |
denotes |
the activation of plasminogen |
|
T2452 |
2885-2899 |
Protein |
denotes |
of plasminogen |
|
T2422 |
2933-2941 |
Protein |
denotes |
SerpinB2 |
|
T2405 |
2962-2970 |
Entity |
denotes |
the cell |
|
T2437 |
2975-2983 |
Protein |
denotes |
SerpinB2 |
|
T2479 |
3004-3048 |
Localization |
denotes |
a nonglycosylated intracellular protein [10] |
|
T2465 |
3004-3048 |
Protein_modification |
denotes |
a nonglycosylated intracellular protein [10] |
|
T2414 |
3004-3048 |
Protein |
denotes |
a nonglycosylated intracellular protein [10] |
|
T2395 |
3022-3035 |
Entity |
denotes |
intracellular |
|
T2407 |
3072-3085 |
Entity |
denotes |
intracellular |
|
T2404 |
3096-3132 |
Protein |
denotes |
SerpinB2 in cell survival [11]–[17], |
|
T2440 |
3267-3284 |
Protein |
denotes |
The SerpinB2 gene |
|
T2467 |
3267-3385 |
Regulation |
denotes |
The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29] |
|
T2421 |
3271-3279 |
Protein |
denotes |
SerpinB2 |
|
T2411 |
3310-3328 |
Entity |
denotes |
cell type specific |
|
T2420 |
3357-3366 |
Protein |
denotes |
cytokines |
|
T2378 |
3371-3380 |
Protein |
denotes |
oncogenes |
|
T2436 |
3406-3437 |
Protein |
denotes |
the most responsive genes known |
|
T2427 |
3481-3489 |
Entity |
denotes |
LPS [31] |
|
T2413 |
3558-3561 |
Entity |
denotes |
LPS |
|
T2388 |
3627-3658 |
Protein |
denotes |
The toll-like receptor 4 (TLR4) |
|
T2442 |
3653-3657 |
Protein |
denotes |
TLR4 |
|
T2398 |
3697-3700 |
Entity |
denotes |
LPS |
|
T2484 |
3758-3827 |
Regulation |
denotes |
the initiation of innate immune responses, including cytokine release |
|
T2408 |
3811-3819 |
Protein |
denotes |
cytokine |
|
T2473 |
3829-3885 |
Binding |
denotes |
The binding of LPS to TLR4 on the surface of macrophages |
|
T2385 |
3841-3847 |
Entity |
denotes |
of LPS |
|
T2460 |
3848-3855 |
Protein |
denotes |
to TLR4 |
|
T2457 |
3871-3885 |
Entity |
denotes |
of macrophages |
|
T2474 |
3895-3931 |
Binding |
denotes |
the recruitment of adaptor molecules |
|
T2403 |
3911-3931 |
Entity |
denotes |
of adaptor molecules |
|
T2466 |
3936-3969 |
Positive_regulation |
denotes |
the activation of protein kinases |
|
T2451 |
3951-3969 |
Protein |
denotes |
of protein kinases |
|
T2372 |
4016-4021 |
Protein |
denotes |
NF-κB |
|
T2435 |
4024-4031 |
Entity |
denotes |
mitogen |
|
T2477 |
4024-4063 |
Positive_regulation |
denotes |
mitogen-activated protein kinase (MAPK) |
|
T2459 |
4042-4063 |
Protein |
denotes |
protein kinase (MAPK) |
|
T2370 |
4058-4062 |
Protein |
denotes |
MAPK |
|
T2426 |
4071-4101 |
Entity |
denotes |
phosphoinositide 3(PI3)-kinase |
|
T2391 |
4071-4101 |
Protein |
denotes |
phosphoinositide 3(PI3)-kinase |
|
T2424 |
4090-4093 |
Protein |
denotes |
PI3 |
|
T2445 |
4198-4201 |
Protein |
denotes |
p38 |
|
T2447 |
4198-4206 |
Protein |
denotes |
p38 MAPK |
|
T2450 |
4208-4216 |
Protein |
denotes |
SerpinB2 |
|
T2478 |
4244-4276 |
Positive_regulation |
denotes |
whose expression was upregulated |
|
T2454 |
4299-4309 |
Protein |
denotes |
IKKβ/NF-κB |
|
T2441 |
4299-4309 |
Protein |
denotes |
IKKβ/NF-κB |
|
T2419 |
4304-4309 |
Protein |
denotes |
NF-κB |
|
T2455 |
4318-4327 |
Protein |
denotes |
MAPK/CREB |
|
T2377 |
4318-4327 |
Protein |
denotes |
MAPK/CREB |
|
T2412 |
4323-4327 |
Protein |
denotes |
CREB |
|
T2410 |
4388-4410 |
Protein |
denotes |
SerpinB2 is distinctly |
|
T2433 |
4426-4451 |
Protein |
denotes |
other LPS-inducible genes |
|
T2380 |
4474-4477 |
Entity |
denotes |
LPS |
|
T2406 |
4511-4516 |
Protein |
denotes |
IFN-γ |
|
T2483 |
4511-4535 |
Positive_regulation |
denotes |
IFN-γ co-stimulation [4] |
|
T2439 |
4573-4638 |
Entity |
denotes |
the SerpinB2 promoter responsible for LPS-dependent transcription |
|
T2429 |
4577-4585 |
Protein |
denotes |
SerpinB2 |
|
T2481 |
4607-4638 |
Regulation |
denotes |
for LPS-dependent transcription |
|
T2461 |
4611-4624 |
Entity |
denotes |
LPS-dependent |
|
T2383 |
4642-4653 |
Entity |
denotes |
macrophages |
|
T2402 |
4671-4674 |
Entity |
denotes |
LPS |
|
T2431 |
4718-4739 |
Entity |
denotes |
the SerpinB2 promoter |
|
T2443 |
4722-4730 |
Protein |
denotes |
SerpinB2 |
|
T2390 |
4776-4779 |
Entity |
denotes |
LPS |
|
T2471 |
4776-4801 |
Positive_regulation |
denotes |
LPS induction of SerpinB2 |
|
T2470 |
4776-4801 |
Gene_expression |
denotes |
LPS induction of SerpinB2 |
|
T2476 |
4776-4830 |
Regulation |
denotes |
LPS induction of SerpinB2 is dependent upon cis-acting |
|
T2475 |
4776-4830 |
Regulation |
denotes |
LPS induction of SerpinB2 is dependent upon cis-acting |
|
T2444 |
4790-4801 |
Protein |
denotes |
of SerpinB2 |
|
T2384 |
4815-4830 |
Protein |
denotes |
upon cis-acting |
|
T2374 |
4874-4885 |
Entity |
denotes |
nucleotides |
|
T2434 |
4903-4932 |
Entity |
denotes |
the murine SerpinB2 promoter, |
|
T2376 |
4914-4922 |
Protein |
denotes |
SerpinB2 |
|
T2480 |
4961-4986 |
Binding |
denotes |
upon a C/EBP binding site |
|
T2371 |
4961-4986 |
Entity |
denotes |
upon a C/EBP binding site |
|
T2399 |
4968-4973 |
Protein |
denotes |
C/EBP |
|
T2382 |
5001-5008 |
Protein |
denotes |
C/EBP-β |
|
T2468 |
5001-5044 |
Binding |
denotes |
C/EBP-β directly bound to this site in vivo |
|
T2472 |
5074-5106 |
Gene_expression |
denotes |
constitutive SerpinB2 expression |
|
T2373 |
5087-5095 |
Protein |
denotes |
SerpinB2 |
|
T2415 |
5111-5119 |
Protein |
denotes |
SerpinB2 |
|
T2486 |
5111-5136 |
Gene_expression |
denotes |
SerpinB2 induction by LPS |
|
T2485 |
5111-5136 |
Positive_regulation |
denotes |
SerpinB2 induction by LPS |
|
T2397 |
5130-5136 |
Entity |
denotes |
by LPS |
|
T2482 |
5138-5254 |
Regulation |
denotes |
Importantly, a C/EBP-β phospho-acceptor site was found to negatively regulate LPS-induced SerpinB2 promoter activity |
|
T2423 |
5151-5182 |
Entity |
denotes |
a C/EBP-β phospho-acceptor site |
|
T2400 |
5153-5160 |
Protein |
denotes |
C/EBP-β |
|
T2446 |
5169-5177 |
Entity |
denotes |
acceptor |
|
T2449 |
5216-5227 |
Entity |
denotes |
LPS-induced |
|
T2381 |
5228-5236 |
Protein |
denotes |
SerpinB2 |
|
T2425 |
5228-5245 |
Entity |
denotes |
SerpinB2 promoter |
|
T2487 |
5306-5357 |
Regulation |
denotes |
the transcriptional regulation of the SerpinB2 gene |
|
T2393 |
5337-5357 |
Protein |
denotes |
of the SerpinB2 gene |
|
T2464 |
5344-5352 |
Protein |
denotes |
SerpinB2 |
|
T3313 |
5967-5977 |
Entity |
denotes |
penicillin |
|
T3303 |
5967-6000 |
Entity |
denotes |
penicillin/streptomycin/glutamate |
|
T3297 |
5967-6000 |
Entity |
denotes |
penicillin/streptomycin/glutamate |
|
T3308 |
5978-5990 |
Entity |
denotes |
streptomycin |
|
T3310 |
6021-6051 |
Entity |
denotes |
Primary peritoneal macrophages |
|
T3315 |
6021-6150 |
Binding |
denotes |
Primary peritoneal macrophages were obtained by injecting C57BL/6 mice with 3% thioglycollate broth followed by peritoneal lavage |
|
T3301 |
6100-6114 |
Entity |
denotes |
thioglycollate |
|
T3305 |
6194-6197 |
Protein |
denotes |
F12 |
|
T3304 |
6205-6214 |
Protein |
denotes |
Gibco BRL |
|
T3299 |
6261-6279 |
Entity |
denotes |
lipopolysaccharide |
|
T3306 |
6346-6354 |
Entity |
denotes |
LPS-free |
|
T3312 |
6362-6376 |
Entity |
denotes |
Cell viability |
|
T3309 |
6402-6421 |
Entity |
denotes |
trypan blue (Sigma) |
|
T3311 |
6415-6420 |
Protein |
denotes |
Sigma |
|
T3314 |
6483-6531 |
Regulation |
denotes |
exclude Mycoplasma infection by nuclear staining |
|
T3296 |
6559-6564 |
Protein |
denotes |
Sigma |
|
T3300 |
6584-6605 |
Protein |
denotes |
Detection Kit (Lonza) |
|
T3307 |
6607-6641 |
Entity |
denotes |
Bacterial lipopolysaccharide (LPS) |
|
T3302 |
6637-6640 |
Entity |
denotes |
LPS |
|
T3298 |
6696-6701 |
Protein |
denotes |
Sigma |
|
T3714 |
6704-6737 |
Protein |
denotes |
Real-time Quantitative PCR (qPCR) |
|
T3715 |
6732-6736 |
Protein |
denotes |
qPCR |
|
T3712 |
6749-6766 |
Protein |
denotes |
Mini Kit (Qiagen) |
|
T3716 |
6787-6796 |
Protein |
denotes |
total RNA |
|
T3718 |
6797-6807 |
Entity |
denotes |
from cells |
|
T3708 |
6813-6827 |
Entity |
denotes |
cDNA synthesis |
|
T3717 |
6837-6846 |
Protein |
denotes |
total RNA |
|
T3709 |
6877-6936 |
Entity |
denotes |
TaqMan® Reverse Transcription Reagents (Applied Biosystems) |
|
T3710 |
6963-6975 |
Protein |
denotes |
TaqMan® Gene |
|
T3719 |
6963-6998 |
Gene_expression |
denotes |
TaqMan® Gene Expression 20X primers |
|
T3707 |
7003-7037 |
Protein |
denotes |
Serpinb2/SerpinB2 (Mm00440905_m1), |
|
T3713 |
7038-7059 |
Protein |
denotes |
Cebpb (Mm00843434_s1) |
|
T3711 |
7064-7087 |
Protein |
denotes |
β-actin (Mm00607939_s1) |
|
T4056 |
7111-7114 |
Entity |
denotes |
DNA |
|
T4048 |
7137-7140 |
Entity |
denotes |
DNA |
|
T4039 |
7150-7181 |
Entity |
denotes |
of the murine SerpinB2 promoter |
|
T4044 |
7164-7172 |
Protein |
denotes |
SerpinB2 |
|
T4038 |
7211-7216 |
Entity |
denotes |
the p |
|
T4049 |
7234-7237 |
Entity |
denotes |
pDB |
|
T4037 |
7369-7394 |
Protein |
denotes |
exonuclease III digestion |
|
T4054 |
7451-7547 |
Entity |
denotes |
genomic DNA isolated from a λFIXII (Stratagene) genomic library prepared from a 129 mouse strain |
|
T4040 |
7642-7647 |
Entity |
denotes |
EcoRI |
|
T4043 |
7679-7712 |
Entity |
denotes |
the transcription initiation site |
|
T4041 |
7757-7760 |
Protein |
denotes |
Eco |
|
T4053 |
7825-7840 |
Entity |
denotes |
EcoRI fragment, |
|
T4047 |
7909-7937 |
Protein |
denotes |
restriction enzyme digestion |
|
T4050 |
7958-8020 |
Protein |
denotes |
The nucleotide sequence of the 4480 bp murine SerpinB2 gene 5′ |
|
T4051 |
7962-7972 |
Entity |
denotes |
nucleotide |
|
T4057 |
8004-8012 |
Protein |
denotes |
SerpinB2 |
|
T4046 |
8058-8071 |
Protein |
denotes |
the ABI PRISM |
|
T4042 |
8142-8146 |
Protein |
denotes |
a PE |
|
T4055 |
8209-8251 |
Protein |
denotes |
GenBank/EMBL/DDBJ Data Bank with Accession |
|
T4045 |
8209-8251 |
Protein |
denotes |
GenBank/EMBL/DDBJ Data Bank with Accession |
|
T4052 |
8212-8216 |
Protein |
denotes |
Bank |
|
T4490 |
8336-8381 |
Entity |
denotes |
10 mM Tris, 150 mM NaCl, 1%Triton X-100, 0.5% |
|
T4485 |
8342-8360 |
Entity |
denotes |
Tris, 150 mM NaCl, |
|
T4499 |
8348-8359 |
Entity |
denotes |
150 mM NaCl |
|
T4493 |
8389-8417 |
Entity |
denotes |
0.5% deoxycholate, 0.1% SDS) |
|
T4495 |
8408-8416 |
Protein |
denotes |
0.1% SDS |
|
T4481 |
8419-8427 |
Protein |
denotes |
proteins |
|
T4497 |
8433-8460 |
Entity |
denotes |
separated on 4–12% Bis-Tris |
|
T4482 |
8468-8485 |
Entity |
denotes |
gels (Invitrogen) |
|
T4486 |
8506-8510 |
Entity |
denotes |
PVDF |
|
T4494 |
8506-8520 |
Entity |
denotes |
PVDF membranes |
|
T4483 |
8522-8531 |
Entity |
denotes |
Membranes |
|
T4488 |
8574-8588 |
Entity |
denotes |
PBS-T (1X PBS, |
|
T4478 |
8624-8642 |
Entity |
denotes |
primary antibodies |
|
T4479 |
8690-8698 |
Protein |
denotes |
SerpinB2 |
|
T4480 |
8690-8709 |
Entity |
denotes |
SerpinB2 antibodies |
|
T4500 |
8748-8825 |
Gene_expression |
denotes |
a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli |
|
T4484 |
8748-8825 |
Protein |
denotes |
a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli |
|
T4477 |
8838-8883 |
Entity |
denotes |
Other antibodies used for western blot assays |
|
T4489 |
8864-8883 |
Entity |
denotes |
western blot assays |
|
T4487 |
8893-8909 |
Protein |
denotes |
C/EBP-β (sc-150) |
|
T4491 |
8940-8988 |
Protein |
denotes |
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) |
|
T4498 |
8982-8987 |
Protein |
denotes |
GAPDH |
|
T4496 |
8993-9004 |
Protein |
denotes |
α/β tubulin |
|
T4492 |
9006-9010 |
Entity |
denotes |
Cell |
|
T5409 |
9054-9088 |
Protein |
denotes |
of SerpinB2 Reporter Gene Plasmids |
|
T5427 |
9093-9096 |
Protein |
denotes |
PCR |
|
T5450 |
9125-9149 |
Entity |
denotes |
a Kpn I restriction site |
|
T5431 |
9178-9183 |
Protein |
denotes |
Xho I |
|
T5468 |
9215-9218 |
Protein |
denotes |
PCR |
|
T5407 |
9237-9273 |
Entity |
denotes |
the SerpinB2 promoter (−3261 to +92) |
|
T5443 |
9241-9249 |
Protein |
denotes |
SerpinB2 |
|
T5467 |
9345-9360 |
Protein |
denotes |
Basic (Promega) |
|
T5405 |
9372-9382 |
Entity |
denotes |
pGLmP-3261 |
|
T5451 |
9373-9377 |
Protein |
denotes |
GLmP |
|
T5464 |
9388-9394 |
Protein |
denotes |
EcoR I |
|
T5445 |
9455-9496 |
Entity |
denotes |
the SerpinB2 promoter EcoR I site (−3261) |
|
T5439 |
9455-9496 |
Entity |
denotes |
the SerpinB2 promoter EcoR I site (−3261) |
|
T5424 |
9459-9467 |
Protein |
denotes |
SerpinB2 |
|
T5433 |
9477-9483 |
Protein |
denotes |
EcoR I |
|
T5456 |
9500-9532 |
Entity |
denotes |
pGLmP-3261 to produce pGLmP-4480 |
|
T5476 |
9501-9505 |
Protein |
denotes |
GLmP |
|
T5435 |
9522-9532 |
Entity |
denotes |
pGLmP-4480 |
|
T5444 |
9523-9527 |
Protein |
denotes |
GLmP |
|
T5399 |
9552-9560 |
Protein |
denotes |
SerpinB2 |
|
T5479 |
9552-9591 |
Protein |
denotes |
SerpinB2 luciferase reporter constructs |
|
T5466 |
9593-9594 |
Entity |
denotes |
p |
|
T5403 |
9594-9598 |
Protein |
denotes |
GLmP |
|
T5434 |
9605-9606 |
Entity |
denotes |
p |
|
T5463 |
9606-9610 |
Protein |
denotes |
GLmP |
|
T5478 |
9617-9620 |
Protein |
denotes |
pGL |
|
T5393 |
9621-9634 |
Protein |
denotes |
P-1686, pGLmP |
|
T5455 |
9641-9642 |
Entity |
denotes |
p |
|
T5413 |
9642-9646 |
Protein |
denotes |
GLmP |
|
T5446 |
9652-9657 |
Protein |
denotes |
pGLmP |
|
T5401 |
9666-9671 |
Protein |
denotes |
pGLmP |
|
T5425 |
9705-9710 |
Protein |
denotes |
pGLmP |
|
T5472 |
9721-9727 |
Protein |
denotes |
EcoR I |
|
T5397 |
9721-9816 |
Protein |
denotes |
EcoR I and a second restriction enzyme (Sfi I, Apa I, BstX I, Bsu36 I, Pac I, Hae III and Apo I |
|
T5414 |
9753-9767 |
Protein |
denotes |
enzyme (Sfi I, |
|
T5422 |
9761-9766 |
Protein |
denotes |
Sfi I |
|
T5481 |
9775-9781 |
Protein |
denotes |
BstX I |
|
T5449 |
9783-9790 |
Protein |
denotes |
Bsu36 I |
|
T5411 |
9792-9797 |
Protein |
denotes |
Pac I |
|
T5462 |
9799-9806 |
Protein |
denotes |
Hae III |
|
T5480 |
9811-9816 |
Protein |
denotes |
Apo I |
|
T5395 |
9883-9885 |
Entity |
denotes |
T4 |
|
T5482 |
9883-9906 |
Protein |
denotes |
T4 DNA polymerase (NEB) |
|
T5390 |
9902-9905 |
Protein |
denotes |
NEB |
|
T5430 |
9944-9946 |
Entity |
denotes |
T4 |
|
T5420 |
9944-9957 |
Protein |
denotes |
T4 DNA ligase |
|
T5417 |
9963-9966 |
Protein |
denotes |
PCR |
|
T5477 |
10016-10052 |
Entity |
denotes |
the murine SerpinB2 promoter regions |
|
T5416 |
10027-10035 |
Protein |
denotes |
SerpinB2 |
|
T5437 |
10122-10147 |
Protein |
denotes |
Basic to produce pGLmP-87 |
|
T5440 |
10178-10182 |
Protein |
denotes |
pGL3 |
|
T5421 |
10178-10198 |
Protein |
denotes |
pGL3 Basic (Promega) |
|
T5423 |
10200-10210 |
Protein |
denotes |
Luciferase |
|
T5469 |
10255-10291 |
Entity |
denotes |
the SerpinB2 promoter LPS-responsive |
|
T5461 |
10259-10267 |
Protein |
denotes |
SerpinB2 |
|
T5398 |
10292-10312 |
Entity |
denotes |
regions E box, PU.1, |
|
T5415 |
10307-10311 |
Protein |
denotes |
PU.1 |
|
T5453 |
10323-10328 |
Protein |
denotes |
C/EBP |
|
T5412 |
10331-10335 |
Protein |
denotes |
GLmP |
|
T5410 |
10362-10375 |
Protein |
denotes |
pGLmP-539mOct |
|
T5396 |
10363-10367 |
Protein |
denotes |
GLmP |
|
T5438 |
10380-10395 |
Protein |
denotes |
pGLmP-539mC/EBP |
|
T5389 |
10381-10385 |
Protein |
denotes |
GLmP |
|
T5441 |
10444-10491 |
Entity |
denotes |
The mutant oligonucleotide PCR primer sequences |
|
T5392 |
10471-10474 |
Protein |
denotes |
PCR |
|
T5459 |
10508-10511 |
Protein |
denotes |
Fig |
|
T5475 |
10544-10548 |
Protein |
denotes |
GLmP |
|
T5400 |
10633-10646 |
Protein |
denotes |
pGLmP-539mOct |
|
T5454 |
10634-10638 |
Protein |
denotes |
GLmP |
|
T5471 |
10679-10694 |
Protein |
denotes |
pGLmP-539mC/EBP |
|
T5474 |
10680-10684 |
Protein |
denotes |
GLmP |
|
T5436 |
10696-10707 |
Protein |
denotes |
mPAI2mCEBPa |
|
T5432 |
10697-10701 |
Protein |
denotes |
PAI2 |
|
T5442 |
10712-10723 |
Protein |
denotes |
mPAI2mCEBPb |
|
T5458 |
10713-10717 |
Protein |
denotes |
PAI2 |
|
T5426 |
10725-10756 |
Entity |
denotes |
The oligonucleotide PCR primers |
|
T5408 |
10745-10748 |
Protein |
denotes |
PCR |
|
T5428 |
10783-10793 |
Protein |
denotes |
pGLmP-539m |
|
T5457 |
10798-10813 |
Protein |
denotes |
pGLmP-539mAP-1a |
|
T5452 |
10799-10803 |
Protein |
denotes |
GLmP |
|
T5429 |
10819-10834 |
Protein |
denotes |
pGLmP-539mAP-1b |
|
T5419 |
10820-10824 |
Protein |
denotes |
GLmP |
|
T5465 |
10866-10906 |
Entity |
denotes |
The flanking oligonucleotide PCR primers |
|
T5470 |
10895-10898 |
Protein |
denotes |
PCR |
|
T5402 |
11006-11030 |
Entity |
denotes |
Recombinant PCR products |
|
T5418 |
11018-11021 |
Protein |
denotes |
PCR |
|
T5391 |
11050-11056 |
Protein |
denotes |
EcoR I |
|
T5460 |
11061-11066 |
Protein |
denotes |
Xho I |
|
T5473 |
11086-11096 |
Protein |
denotes |
the EcoR I |
|
T5404 |
11101-11106 |
Protein |
denotes |
Xho I |
|
T5394 |
11128-11137 |
Entity |
denotes |
pGLmP-539 |
|
T5406 |
11129-11133 |
Protein |
denotes |
GLmP |
|
T5447 |
11170-11211 |
Entity |
denotes |
of the wild-type murine SerpinB2 promoter |
|
T5448 |
11194-11202 |
Protein |
denotes |
SerpinB2 |
|
T7595 |
11300-11310 |
Protein |
denotes |
Luciferase |
|
T6343 |
11300-11310 |
Protein |
denotes |
Luciferase |
|
T6349 |
11319-11339 |
Entity |
denotes |
RAW264.7 Macrophages |
|
T6346 |
11422-11432 |
Protein |
denotes |
luciferase |
|
T6361 |
11469-11498 |
Protein |
denotes |
the pRL-thymidine kinase (TK) |
|
T6345 |
11473-11486 |
Protein |
denotes |
pRL-thymidine |
|
T6338 |
11473-11486 |
Entity |
denotes |
pRL-thymidine |
|
T6352 |
11477-11486 |
Entity |
denotes |
thymidine |
|
T6363 |
11495-11497 |
Protein |
denotes |
TK |
|
T6335 |
11575-11589 |
Protein |
denotes |
a Bio-Rad Gene |
|
T6344 |
11680-11697 |
Entity |
denotes |
the SV40 promoter |
|
T6350 |
11807-11815 |
Entity |
denotes |
promoter |
|
T6364 |
11841-11858 |
Entity |
denotes |
Transfected cells |
|
T6342 |
11951-11975 |
Entity |
denotes |
two identical cell pools |
|
T6360 |
11980-12008 |
Protein |
denotes |
incubated 16 hrs in a 5% CO2 |
|
T6348 |
12077-12101 |
Entity |
denotes |
absence of 100 ng/ml LPS |
|
T6357 |
12103-12113 |
Protein |
denotes |
Luciferase |
|
T6356 |
12142-12174 |
Protein |
denotes |
a Dual-Luciferase Reporter Assay |
|
T6358 |
12275-12283 |
Entity |
denotes |
Promoter |
|
T6336 |
12323-12341 |
Protein |
denotes |
firefly luciferase |
|
T6353 |
12375-12381 |
Protein |
denotes |
pRL-TK |
|
T6365 |
12375-12381 |
Protein |
denotes |
pRL-TK |
|
T6341 |
12379-12381 |
Protein |
denotes |
TK |
|
T6354 |
12390-12400 |
Protein |
denotes |
luciferase |
|
T6337 |
12419-12435 |
Protein |
denotes |
cellular protein |
|
T6367 |
12451-12511 |
Regulation |
denotes |
where co-transfected C/EBP-β or LPS affected pRL-TK activity |
|
T6366 |
12451-12511 |
Regulation |
denotes |
where co-transfected C/EBP-β or LPS affected pRL-TK activity |
|
T6362 |
12457-12479 |
Protein |
denotes |
co-transfected C/EBP-β |
|
T6355 |
12483-12486 |
Entity |
denotes |
LPS |
|
T6351 |
12496-12502 |
Protein |
denotes |
pRL-TK |
|
T6359 |
12496-12502 |
Protein |
denotes |
pRL-TK |
|
T6339 |
12514-12535 |
Entity |
denotes |
Protein concentration |
|
T6347 |
12569-12595 |
Protein |
denotes |
protein microassay reagent |
|
T6340 |
12569-12595 |
Entity |
denotes |
protein microassay reagent |
|
T6910 |
12734-12745 |
Protein |
denotes |
mouse cebpb |
|
T6925 |
12802-12807 |
Protein |
denotes |
cebpb |
|
T6908 |
12909-12928 |
Protein |
denotes |
of endogenous C/EBP |
|
T6918 |
12944-12970 |
Entity |
denotes |
cells of the other species |
|
T6911 |
13000-13005 |
Protein |
denotes |
CEBPB |
|
T6919 |
13008-13011 |
Protein |
denotes |
RNA |
|
T6914 |
13069-13090 |
Entity |
denotes |
lentiviral particles, |
|
T6909 |
13123-13149 |
Entity |
denotes |
with a mixture of plasmids |
|
T6923 |
13281-13320 |
Entity |
denotes |
Lipofectamine 2000 reagent (Invitrogen) |
|
T6924 |
13337-13348 |
Entity |
denotes |
supernatant |
|
T6920 |
13363-13369 |
Protein |
denotes |
48 hrs |
|
T6917 |
13476-13492 |
Entity |
denotes |
The target cells |
|
T6915 |
13511-13537 |
Entity |
denotes |
the lentiviral supernatant |
|
T6912 |
13542-13584 |
Entity |
denotes |
8 µg/ml Polybrene (American Bioanalytical) |
|
T6921 |
13589-13595 |
Protein |
denotes |
24 hrs |
|
T6913 |
13597-13623 |
Entity |
denotes |
The lentiviral supernatant |
|
T6926 |
13687-13731 |
Protein |
denotes |
72 hrs to allow for effective gene knockdown |
|
T6916 |
13717-13721 |
Protein |
denotes |
gene |
|
T6922 |
13733-13740 |
Protein |
denotes |
C/EBP-β |
|
T7584 |
13859-13871 |
Protein |
denotes |
MEFs (1×105) |
|
T7592 |
13913-13923 |
Protein |
denotes |
luciferase |
|
T7594 |
13961-14003 |
Protein |
denotes |
a β-actin-β-galactosidase reporter plasmid |
|
T7588 |
13961-14003 |
Protein |
denotes |
a β-actin-β-galactosidase reporter plasmid |
|
T7586 |
14217-14220 |
Entity |
denotes |
LPS |
|
T7591 |
14237-14242 |
Protein |
denotes |
4 hrs |
|
T7577 |
14299-14306 |
Protein |
denotes |
C/EBP-β |
|
T7576 |
14310-14363 |
Protein |
denotes |
C/EBP-β phospho-acceptor mutants (T188A, T217A, S64A) |
|
T7578 |
14344-14357 |
Protein |
denotes |
T188A, T217A, |
|
T7587 |
14344-14362 |
Protein |
denotes |
T188A, T217A, S64A |
|
T7582 |
14351-14356 |
Protein |
denotes |
T217A |
|
T7589 |
14430-14433 |
Entity |
denotes |
DNA |
|
T7585 |
14436-14459 |
Protein |
denotes |
Luciferase activity was |
|
T7593 |
14497-14517 |
Protein |
denotes |
β-galactosidase [38] |
|
T7590 |
14528-14538 |
Protein |
denotes |
Luciferase |
|
T7579 |
14556-14571 |
Protein |
denotes |
β-Galactosidase |
|
T7583 |
14556-14596 |
Protein |
denotes |
β-Galactosidase Enzyme Assay System Kits |
|
T7580 |
14556-14596 |
Protein |
denotes |
β-Galactosidase Enzyme Assay System Kits |
|
T7596 |
14727-14785 |
Gene_expression |
denotes |
Expression of the C/EBP-β phospho-acceptor mutant proteins |
|
T7575 |
14738-14785 |
Protein |
denotes |
of the C/EBP-β phospho-acceptor mutant proteins |
|
T7581 |
14745-14776 |
Protein |
denotes |
C/EBP-β phospho-acceptor mutant |
|
T8044 |
14890-14921 |
Entity |
denotes |
double-stranded oligonucleotide |
|
T8048 |
14955-14994 |
Protein |
denotes |
prepared using T4 polynucleotide kinase |
|
T8037 |
14970-14972 |
Entity |
denotes |
T4 |
|
T8031 |
15006-15010 |
Entity |
denotes |
-ATP |
|
T8056 |
15012-15038 |
Entity |
denotes |
RAW 264.7 nuclear extracts |
|
T8030 |
15053-15087 |
Entity |
denotes |
by the detergent lysis method [41] |
|
T8051 |
15130-15148 |
Entity |
denotes |
10 mM HEPES pH 7.9 |
|
T8035 |
15159-15187 |
Entity |
denotes |
BSA, 2 mM DTT, 30% glycerol, |
|
T8054 |
15174-15186 |
Entity |
denotes |
30% glycerol |
|
T8040 |
15204-15221 |
Entity |
denotes |
1 µg poly (dI-dC) |
|
T8053 |
15231-15247 |
Entity |
denotes |
nuclear extracts |
|
T8055 |
15269-15272 |
Protein |
denotes |
cpm |
|
T8033 |
15446-15468 |
Entity |
denotes |
5% polyacrylamide gels |
|
T8038 |
15449-15463 |
Entity |
denotes |
polyacrylamide |
|
T8042 |
15473-15485 |
Entity |
denotes |
1 acrylamide |
|
T8039 |
15486-15500 |
Protein |
denotes |
bis-acrylamide |
|
T8034 |
15486-15500 |
Entity |
denotes |
bis-acrylamide |
|
T8052 |
15490-15500 |
Entity |
denotes |
acrylamide |
|
T8043 |
15537-15554 |
Entity |
denotes |
supershift assays |
|
T8046 |
15556-15572 |
Entity |
denotes |
nuclear extracts |
|
T8050 |
15578-15641 |
Protein |
denotes |
pre-incubated 2 hrs on ice with 4 µg of specific C/EBP antibody |
|
T8057 |
15601-15641 |
Entity |
denotes |
ice with 4 µg of specific C/EBP antibody |
|
T8032 |
15610-15641 |
Entity |
denotes |
4 µg of specific C/EBP antibody |
|
T8036 |
15615-15641 |
Entity |
denotes |
of specific C/EBP antibody |
|
T8045 |
15627-15632 |
Protein |
denotes |
C/EBP |
|
T8041 |
15643-15653 |
Entity |
denotes |
Antibodies |
|
T8058 |
15643-15684 |
Binding |
denotes |
Antibodies were purchased from Santa Cruz |
|
T8049 |
15674-15679 |
Protein |
denotes |
Santa |
|
T8047 |
15731-15752 |
Protein |
denotes |
anti-C/EBP-δ (sc-151) |
|
T8607 |
16001-16066 |
Entity |
denotes |
the chromatin with 1% formaldehyde at room temperature for 10 min |
|
T8608 |
16020-16035 |
Entity |
denotes |
1% formaldehyde |
|
T8612 |
16089-16096 |
Entity |
denotes |
glycine |
|
T8616 |
16128-16133 |
Entity |
denotes |
cells |
|
T8605 |
16186-16189 |
Entity |
denotes |
ice |
|
T8614 |
16191-16210 |
Entity |
denotes |
Cells extracts were |
|
T8613 |
16197-16205 |
Entity |
denotes |
extracts |
|
T8591 |
16342-16345 |
Entity |
denotes |
ice |
|
T8603 |
16399-16411 |
Entity |
denotes |
of chromatin |
|
T8615 |
16474-16498 |
Entity |
denotes |
the following antibodies |
|
T8602 |
16500-16518 |
Protein |
denotes |
C/EBP-β (sc-150X), |
|
T8609 |
16500-16535 |
Protein |
denotes |
C/EBP-β (sc-150X), p-C/EBP-β (T217) |
|
T8597 |
16530-16534 |
Entity |
denotes |
T217 |
|
T8611 |
16609-16626 |
Protein |
denotes |
RNA polymerase II |
|
T8604 |
16719-16728 |
Protein |
denotes |
Protein G |
|
T8618 |
16787-16806 |
Binding |
denotes |
the bound chromatin |
|
T8596 |
16787-16806 |
Entity |
denotes |
the bound chromatin |
|
T8606 |
16821-16852 |
Entity |
denotes |
ChIP Elution Buffer (Millipore) |
|
T8599 |
16857-16869 |
Protein |
denotes |
the proteins |
|
T8594 |
16889-16901 |
Protein |
denotes |
Proteinase K |
|
T8595 |
16906-16911 |
Protein |
denotes |
2 hrs |
|
T8592 |
16921-16928 |
Entity |
denotes |
The DNA |
|
T8610 |
16966-16969 |
Protein |
denotes |
PCR |
|
T8593 |
16983-16995 |
Protein |
denotes |
Kit (Qiagen) |
|
T8600 |
16997-17000 |
Entity |
denotes |
DNA |
|
T8617 |
17018-17039 |
Protein |
denotes |
semi-quantitative PCR |
|
T8598 |
17046-17050 |
Protein |
denotes |
qPCR |
|
T8601 |
17104-17134 |
Entity |
denotes |
the SerpinB2 proximal promoter |
|
T8590 |
17108-17116 |
Protein |
denotes |
SerpinB2 |
|
T8940 |
17353-17358 |
Protein |
denotes |
ANOVA |
|
T8939 |
17363-17374 |
Entity |
denotes |
Student’s t |
|
T9270 |
17450-17467 |
Protein |
denotes |
The SerpinB2 Gene |
|
T9258 |
17454-17462 |
Protein |
denotes |
SerpinB2 |
|
T9278 |
17492-17495 |
Entity |
denotes |
LPS |
|
T9260 |
17501-17521 |
Entity |
denotes |
RAW264.7 macrophages |
|
T9259 |
17538-17542 |
Entity |
denotes |
LPS, |
|
T9262 |
17543-17586 |
Protein |
denotes |
SerpinB2 mRNA was detectable as early as 30 |
|
T9271 |
17552-17556 |
Protein |
denotes |
mRNA |
|
T9277 |
17601-17604 |
Entity |
denotes |
LPS |
|
T9263 |
17643-17659 |
Protein |
denotes |
24 hrs (Fig. 1A) |
|
T9281 |
17688-17729 |
Gene_expression |
denotes |
of LPS-inducible SerpinB2 mRNA expression |
|
T9257 |
17705-17713 |
Protein |
denotes |
SerpinB2 |
|
T9261 |
17705-17718 |
Protein |
denotes |
SerpinB2 mRNA |
|
T9265 |
17762-17791 |
Entity |
denotes |
murine peritoneal macrophages |
|
T9276 |
17796-17836 |
Entity |
denotes |
human peripheral blood mononuclear cells |
|
T9272 |
17848-17859 |
Entity |
denotes |
LPS-induced |
|
T9280 |
17848-17879 |
Gene_expression |
denotes |
LPS-induced SerpinB2 expression |
|
T9275 |
17860-17868 |
Protein |
denotes |
SerpinB2 |
|
T9282 |
17894-17927 |
Positive_regulation |
denotes |
an increase in gene transcription |
|
T9279 |
17906-17927 |
Transcription |
denotes |
in gene transcription |
|
T9269 |
17909-17913 |
Protein |
denotes |
gene |
|
T9274 |
17946-17957 |
Protein |
denotes |
of the mRNA |
|
T9273 |
17980-17988 |
Protein |
denotes |
SerpinB2 |
|
T9267 |
17980-18027 |
Protein |
denotes |
SerpinB2 protein expression was also induced as |
|
T9268 |
18049-18071 |
Entity |
denotes |
other cell types [31], |
|
T9264 |
18076-18124 |
Protein |
denotes |
detectable after 8 hrs of LPS treatment (Fig. 1) |
|
T9266 |
18102-18105 |
Entity |
denotes |
LPS |
|
T22559 |
18170-18173 |
Entity |
denotes |
LPS |
|
T22556 |
18187-18195 |
Protein |
denotes |
SerpinB2 |
|
T22569 |
18187-18200 |
Protein |
denotes |
SerpinB2 mRNA |
|
T22558 |
18205-18212 |
Protein |
denotes |
protein |
|
T22572 |
18205-18223 |
Gene_expression |
denotes |
protein expression |
|
T22564 |
18227-18250 |
Entity |
denotes |
murine macrophage cells |
|
T22568 |
18234-18244 |
Entity |
denotes |
macrophage |
|
T22567 |
18252-18272 |
Entity |
denotes |
RAW264.7 macrophages |
|
T22565 |
18319-18328 |
Entity |
denotes |
ng/ml LPS |
|
T22566 |
18334-18338 |
Protein |
denotes |
qPCR |
|
T22561 |
18348-18379 |
Protein |
denotes |
of murine SerpinB2 mRNA levels, |
|
T22562 |
18367-18371 |
Protein |
denotes |
mRNA |
|
T22557 |
18392-18399 |
Protein |
denotes |
β-actin |
|
T22571 |
18508-18569 |
Gene_expression |
denotes |
analysis of SerpinB2 protein expression in whole cell lysates |
|
T22560 |
18520-18528 |
Protein |
denotes |
SerpinB2 |
|
T22555 |
18520-18536 |
Protein |
denotes |
SerpinB2 protein |
|
T22563 |
18593-18598 |
Protein |
denotes |
GAPDH |
|
T22570 |
18602-18619 |
Regulation |
denotes |
a loading control |
|
T9999 |
18622-18652 |
Entity |
denotes |
The SerpinB2 Proximal Promoter |
|
T9995 |
18622-18652 |
Protein |
denotes |
The SerpinB2 Proximal Promoter |
|
T9980 |
18661-18664 |
Entity |
denotes |
LPS |
|
T10002 |
18695-18698 |
Protein |
denotes |
cis |
|
T9990 |
18740-18797 |
Entity |
denotes |
LPS in the 5′ flanking region of the murine SerpinB2 gene |
|
T10003 |
18770-18797 |
Protein |
denotes |
of the murine SerpinB2 gene |
|
T10013 |
18784-18792 |
Protein |
denotes |
SerpinB2 |
|
T10008 |
18799-18810 |
Entity |
denotes |
nucleotides |
|
T9988 |
18933-18951 |
Protein |
denotes |
firefly luciferase |
|
T9991 |
18961-18978 |
Protein |
denotes |
gene (pGL3 Basic) |
|
T9987 |
18967-18971 |
Protein |
denotes |
pGL3 |
|
T9977 |
18967-18977 |
Protein |
denotes |
pGL3 Basic |
|
T9978 |
19053-19087 |
Entity |
denotes |
sub-confluent RAW264.7 macrophages |
|
T10010 |
19104-19114 |
Protein |
denotes |
luciferase |
|
T9996 |
19155-19158 |
Entity |
denotes |
LPS |
|
T10011 |
19162-19165 |
Entity |
denotes |
PMA |
|
T10000 |
19183-19194 |
Entity |
denotes |
PMA-induced |
|
T10018 |
19183-19284 |
Regulation |
denotes |
PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45] |
|
T9998 |
19195-19203 |
Protein |
denotes |
SerpinB2 |
|
T10007 |
19195-19208 |
Protein |
denotes |
SerpinB2 gene |
|
T9992 |
19258-19268 |
Entity |
denotes |
macrophage |
|
T9997 |
19355-19370 |
Protein |
denotes |
AP-1 responsive |
|
T10016 |
19428-19436 |
Protein |
denotes |
SerpinB2 |
|
T10005 |
19487-19491 |
Entity |
denotes |
PMA- |
|
T9982 |
19581-19612 |
Entity |
denotes |
of the murine SerpinB2 promoter |
|
T9981 |
19595-19603 |
Protein |
denotes |
SerpinB2 |
|
T9986 |
19643-19659 |
Entity |
denotes |
LPS-inducibility |
|
T9979 |
19787-19820 |
Entity |
denotes |
the LPS-response of the promoter, |
|
T9975 |
19807-19819 |
Entity |
denotes |
the promoter |
|
T9983 |
19861-19864 |
Entity |
denotes |
LPS |
|
T10006 |
19944-19972 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T9985 |
19955-19963 |
Protein |
denotes |
SerpinB2 |
|
T10009 |
19976-19979 |
Entity |
denotes |
PMA |
|
T9989 |
20030-20054 |
Entity |
denotes |
of the SerpinB2 promoter |
|
T10014 |
20037-20045 |
Protein |
denotes |
SerpinB2 |
|
T9994 |
20087-20090 |
Entity |
denotes |
LPS |
|
T9993 |
20127-20130 |
Entity |
denotes |
PMA |
|
T10012 |
20141-20164 |
Protein |
denotes |
the −87 murine SerpinB2 |
|
T9984 |
20165-20183 |
Entity |
denotes |
promoter construct |
|
T10004 |
20218-20222 |
Entity |
denotes |
PMA, |
|
T9976 |
20285-20313 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T10001 |
20296-20304 |
Protein |
denotes |
SerpinB2 |
|
T10017 |
20317-20320 |
Entity |
denotes |
PMA |
|
T10015 |
20344-20354 |
Entity |
denotes |
nucleotide |
|
T23056 |
20422-20426 |
Protein |
denotes |
gene |
|
T23091 |
20439-20442 |
Entity |
denotes |
LPS |
|
T23071 |
20473-20501 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T23081 |
20484-20492 |
Protein |
denotes |
SerpinB2 |
|
T23083 |
20546-20599 |
Protein |
denotes |
SerpinB2 promoter and 5′ deletion luciferase reporter |
|
T23088 |
20685-20713 |
Protein |
denotes |
the luciferase reporter gene |
|
T23073 |
20689-20699 |
Protein |
denotes |
luciferase |
|
T23069 |
20752-20770 |
Protein |
denotes |
restriction enzyme |
|
T23084 |
20752-20776 |
Entity |
denotes |
restriction enzyme sites |
|
T23075 |
20785-20821 |
Entity |
denotes |
specific oligonucleotide PCR primers |
|
T23082 |
20810-20813 |
Protein |
denotes |
PCR |
|
T23055 |
20848-20910 |
Entity |
denotes |
the most 5′ nucleotide of murine SerpinB2 5′ flanking sequence |
|
T23076 |
20881-20889 |
Protein |
denotes |
SerpinB2 |
|
T23074 |
20916-20937 |
Entity |
denotes |
RAW 264.7 macrophages |
|
T23070 |
20986-21021 |
Protein |
denotes |
murine SerpinB2 promoter-luciferase |
|
T23061 |
20986-21021 |
Entity |
denotes |
murine SerpinB2 promoter-luciferase |
|
T23064 |
20993-21001 |
Protein |
denotes |
SerpinB2 |
|
T23062 |
21064-21069 |
Entity |
denotes |
Cells |
|
T23080 |
21082-21126 |
Entity |
denotes |
left untreated or treated with 100 ng/ml LPS |
|
T23066 |
21133-21153 |
Entity |
denotes |
ng/ml PMA for 16 hrs |
|
T23058 |
21147-21153 |
Protein |
denotes |
16 hrs |
|
T23059 |
21177-21187 |
Protein |
denotes |
luciferase |
|
T23068 |
21197-21201 |
Protein |
denotes |
gene |
|
T23063 |
21308-21311 |
Entity |
denotes |
DNA |
|
T23086 |
21363-21371 |
Protein |
denotes |
SerpinB2 |
|
T23087 |
21435-21450 |
Protein |
denotes |
murine SerpinB2 |
|
T23065 |
21487-21497 |
Entity |
denotes |
nucleotide |
|
T23060 |
21526-21551 |
Entity |
denotes |
by the same colored boxes |
|
T23054 |
21667-21671 |
Protein |
denotes |
ID4 |
|
T23078 |
21667-21683 |
Protein |
denotes |
ID4 = ID4 short |
|
T23079 |
21720-21723 |
Protein |
denotes |
L1 |
|
T23090 |
21720-21728 |
Protein |
denotes |
L1 = L1 |
|
T23089 |
21771-21774 |
Entity |
denotes |
L2 |
|
T23085 |
21777-21779 |
Entity |
denotes |
L2 |
|
T23057 |
21786-21790 |
Protein |
denotes |
MIR |
|
T23077 |
21792-21795 |
Protein |
denotes |
MIR |
|
T23053 |
21850-21852 |
Entity |
denotes |
n |
|
T23092 |
21859-21864 |
Entity |
denotes |
tetra |
|
T23067 |
21859-21874 |
Entity |
denotes |
tetranucleotide |
|
T23072 |
21883-21887 |
Entity |
denotes |
tis |
|
T10952 |
21964-21998 |
Entity |
denotes |
Murine SerpinB2 Proximal Promoters |
|
T10936 |
21971-21979 |
Protein |
denotes |
SerpinB2 |
|
T10971 |
22011-22031 |
Protein |
denotes |
potential cis-acting |
|
T10943 |
22077-22101 |
Protein |
denotes |
the murine SerpinB2 gene |
|
T10972 |
22088-22096 |
Protein |
denotes |
SerpinB2 |
|
T10960 |
22159-22167 |
Protein |
denotes |
SerpinB2 |
|
T10939 |
22248-22292 |
Entity |
denotes |
potential transcription factor binding sites |
|
T10976 |
22329-22376 |
Regulation |
denotes |
the regulation of SerpinB2 gene expression [52] |
|
T10977 |
22344-22376 |
Gene_expression |
denotes |
of SerpinB2 gene expression [52] |
|
T10962 |
22347-22355 |
Protein |
denotes |
SerpinB2 |
|
T10940 |
22502-22518 |
Entity |
denotes |
murine promoters |
|
T10967 |
22530-22563 |
Entity |
denotes |
The proximal promoter (Region E), |
|
T10958 |
22593-22596 |
Entity |
denotes |
LPS |
|
T10942 |
22748-22784 |
Entity |
denotes |
the human SerpinB2 proximal promoter |
|
T10959 |
22758-22766 |
Protein |
denotes |
SerpinB2 |
|
T10963 |
22802-22839 |
Entity |
denotes |
the murine SerpinB2 promoter (Fig. 3) |
|
T10941 |
22813-22821 |
Protein |
denotes |
SerpinB2 |
|
T10973 |
22917-22978 |
Entity |
denotes |
the transcription initiation site, similar to the position of |
|
T10944 |
22979-23023 |
Entity |
denotes |
the TATA box of the human SERPINB2 gene [53] |
|
T10938 |
22992-23023 |
Protein |
denotes |
of the human SERPINB2 gene [53] |
|
T10974 |
23005-23013 |
Protein |
denotes |
SERPINB2 |
|
T10970 |
23065-23080 |
Protein |
denotes |
protein (C/EBP) |
|
T10969 |
23074-23079 |
Protein |
denotes |
C/EBP |
|
T10955 |
23111-23151 |
Protein |
denotes |
two potential activator protein 1 (AP-1) |
|
T10937 |
23146-23150 |
Protein |
denotes |
AP-1 |
|
T10956 |
23236-23239 |
Entity |
denotes |
AMP |
|
T10966 |
23258-23261 |
Protein |
denotes |
CRE |
|
T10954 |
23288-23310 |
Entity |
denotes |
Both of the AP-1 sites |
|
T10968 |
23293-23310 |
Entity |
denotes |
of the AP-1 sites |
|
T10949 |
23300-23304 |
Protein |
denotes |
AP-1 |
|
T10951 |
23360-23388 |
Entity |
denotes |
the human SERPINB2 promoter, |
|
T10946 |
23370-23378 |
Protein |
denotes |
SERPINB2 |
|
T10947 |
23393-23400 |
Protein |
denotes |
the CRE |
|
T10935 |
23428-23460 |
Entity |
denotes |
a single central nucleotide [37] |
|
T10948 |
23480-23497 |
Entity |
denotes |
E box (−538/−533) |
|
T10975 |
23510-23564 |
Binding |
denotes |
potential binding sites for PU.1 (−412/−407) and Oct-1 |
|
T10957 |
23510-23564 |
Entity |
denotes |
potential binding sites for PU.1 (−412/−407) and Oct-1 |
|
T10964 |
23538-23554 |
Protein |
denotes |
PU.1 (−412/−407) |
|
T10945 |
23559-23564 |
Protein |
denotes |
Oct-1 |
|
T10953 |
23605-23626 |
Entity |
denotes |
the proximal promoter |
|
T10961 |
23635-23638 |
Protein |
denotes |
Fig |
|
T10934 |
23645-23678 |
Entity |
denotes |
Further upstream, a retinoic acid |
|
T10965 |
23778-23782 |
Entity |
denotes |
site |
|
T10950 |
23799-23806 |
Entity |
denotes |
Fig. S2 |
|
T23609 |
23942-23945 |
Entity |
denotes |
LPS |
|
T23608 |
23964-23995 |
Entity |
denotes |
of the murine SerpinB2 promoter |
|
T23624 |
23978-23986 |
Protein |
denotes |
SerpinB2 |
|
T23623 |
24021-24031 |
Entity |
denotes |
nucleotide |
|
T23610 |
24061-24079 |
Entity |
denotes |
Clustal W software |
|
T23614 |
24081-24084 |
Protein |
denotes |
Cis |
|
T23620 |
24133-24158 |
Entity |
denotes |
murine SerpinB2 promoters |
|
T23613 |
24140-24148 |
Protein |
denotes |
SerpinB2 |
|
T23617 |
24182-24187 |
Protein |
denotes |
AP-1 |
|
T23628 |
24182-24207 |
Entity |
denotes |
AP-1 = activator protein |
|
T23619 |
24182-24207 |
Protein |
denotes |
AP-1 = activator protein |
|
T23611 |
24211-24217 |
Protein |
denotes |
C/EBP |
|
T23612 |
24252-24256 |
Protein |
denotes |
CRE |
|
T23616 |
24252-24326 |
Protein |
denotes |
CRE = cAMP response element; Oct1 = octamer transcription factor 1/POU2F1 |
|
T23621 |
24258-24262 |
Protein |
denotes |
cAMP |
|
T23627 |
24289-24326 |
Protein |
denotes |
octamer transcription factor 1/POU2F1 |
|
T23626 |
24289-24326 |
Protein |
denotes |
octamer transcription factor 1/POU2F1 |
|
T23618 |
24320-24326 |
Protein |
denotes |
POU2F1 |
|
T23622 |
24328-24333 |
Protein |
denotes |
PU.1 |
|
T23629 |
24328-24364 |
Protein |
denotes |
PU.1 = purine box binding protein 1 |
|
T23625 |
24366-24414 |
Entity |
denotes |
The putative transcription initiation site (tis) |
|
T23615 |
24432-24438 |
Entity |
denotes |
exon 1 |
|
T12008 |
24559-24564 |
Protein |
denotes |
C/EBP |
|
T12043 |
24559-24688 |
Regulation |
denotes |
C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription |
|
T12042 |
24559-24688 |
Regulation |
denotes |
C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription |
|
T12041 |
24559-24688 |
Regulation |
denotes |
C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription |
|
T12007 |
24566-24569 |
Protein |
denotes |
CRE |
|
T12031 |
24574-24634 |
Entity |
denotes |
Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter |
|
T12003 |
24578-24582 |
Protein |
denotes |
AP-1 |
|
T12025 |
24592-24634 |
Entity |
denotes |
the Murine SerpinB2 Gene Proximal Promoter |
|
T11986 |
24592-24634 |
Protein |
denotes |
the Murine SerpinB2 Gene Proximal Promoter |
|
T11998 |
24603-24611 |
Protein |
denotes |
SerpinB2 |
|
T12040 |
24815-24925 |
Regulation |
denotes |
sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57] |
|
T11984 |
24815-24925 |
Entity |
denotes |
sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57] |
|
T12011 |
24909-24925 |
Protein |
denotes |
other genes [57] |
|
T11993 |
24943-24953 |
Entity |
denotes |
nucleotide |
|
T12021 |
25019-25028 |
Protein |
denotes |
the pGLmP |
|
T11989 |
25040-25082 |
Protein |
denotes |
SerpinB2 promoter-luciferase reporter gene |
|
T12000 |
25094-25097 |
Protein |
denotes |
Fig |
|
T12035 |
25134-25168 |
Entity |
denotes |
of the consensus E box (−538/−533) |
|
T11991 |
25134-25168 |
Entity |
denotes |
of the consensus E box (−538/−533) |
|
T11999 |
25170-25186 |
Protein |
denotes |
PU.1 (−412/−407) |
|
T12018 |
25203-25220 |
Protein |
denotes |
Oct-1 (−296/−288) |
|
T11996 |
25221-25225 |
Entity |
denotes |
site |
|
T12010 |
25255-25263 |
Entity |
denotes |
promoter |
|
T11987 |
25296-25313 |
Entity |
denotes |
of the C/EBP site |
|
T11992 |
25303-25308 |
Protein |
denotes |
C/EBP |
|
T12029 |
25348-25356 |
Entity |
denotes |
promoter |
|
T12036 |
25402-25437 |
Entity |
denotes |
the −189 SerpinB2 promoter deletion |
|
T12038 |
25411-25419 |
Protein |
denotes |
SerpinB2 |
|
T12044 |
25456-25548 |
Gene_expression |
denotes |
have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene |
|
T12001 |
25486-25501 |
Entity |
denotes |
this C/EBP site |
|
T12024 |
25491-25496 |
Protein |
denotes |
C/EBP |
|
T12023 |
25505-25516 |
Entity |
denotes |
LPS-induced |
|
T12039 |
25505-25548 |
Positive_regulation |
denotes |
LPS-induced activation of the SerpinB2 gene |
|
T12013 |
25528-25548 |
Protein |
denotes |
of the SerpinB2 gene |
|
T12034 |
25535-25543 |
Protein |
denotes |
SerpinB2 |
|
T23983 |
25650-25704 |
Entity |
denotes |
the LPS-responsiveness of the murine SerpinB2 promoter |
|
T23991 |
25673-25704 |
Entity |
denotes |
of the murine SerpinB2 promoter |
|
T23989 |
25687-25695 |
Protein |
denotes |
SerpinB2 |
|
T23997 |
25758-25789 |
Entity |
denotes |
of the murine SerpinB2 promoter |
|
T23984 |
25772-25780 |
Protein |
denotes |
SerpinB2 |
|
T23987 |
25821-25824 |
Protein |
denotes |
cis |
|
T23993 |
25867-25872 |
Entity |
denotes |
boxes |
|
T23990 |
25973-26067 |
Entity |
denotes |
of murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19 used in ChIP assays |
|
T23988 |
25973-26067 |
Entity |
denotes |
of murine SerpinB2 proximal promoter-specific primers, 338/−315 and −5/+19 used in ChIP assays |
|
T23996 |
25983-25991 |
Protein |
denotes |
SerpinB2 |
|
T23994 |
26056-26067 |
Entity |
denotes |
ChIP assays |
|
T23986 |
26087-26108 |
Entity |
denotes |
RAW 264.7 macrophages |
|
T23981 |
26157-26212 |
Protein |
denotes |
murine SerpinB2 promoter-luciferase reporter constructs |
|
T23985 |
26259-26279 |
Entity |
denotes |
ng/ml LPS for 16 hrs |
|
T23992 |
26273-26279 |
Protein |
denotes |
16 hrs |
|
T23995 |
26307-26317 |
Protein |
denotes |
luciferase |
|
T23982 |
26337-26340 |
Entity |
denotes |
LPS |
|
T12027 |
26465-26472 |
Protein |
denotes |
the CRE |
|
T11995 |
26477-26491 |
Entity |
denotes |
two AP-1 sites |
|
T12009 |
26481-26485 |
Protein |
denotes |
AP-1 |
|
T12002 |
26495-26523 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T12005 |
26506-26514 |
Protein |
denotes |
SerpinB2 |
|
T11994 |
26559-26620 |
Entity |
denotes |
in the PMA-responsiveness of the human SERPINB2 promoter [37] |
|
T11990 |
26585-26620 |
Entity |
denotes |
of the human SERPINB2 promoter [37] |
|
T12032 |
26598-26606 |
Protein |
denotes |
SERPINB2 |
|
T12022 |
26622-26633 |
Entity |
denotes |
these sites |
|
T11997 |
26655-26665 |
Entity |
denotes |
nucleotide |
|
T12028 |
26728-26731 |
Entity |
denotes |
LPS |
|
T12012 |
26744-26772 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T12014 |
26755-26763 |
Protein |
denotes |
SerpinB2 |
|
T11985 |
26786-26789 |
Protein |
denotes |
Fig |
|
T12004 |
26804-26814 |
Protein |
denotes |
of the CRE |
|
T12015 |
26831-26872 |
Entity |
denotes |
either of the two AP-1 sites at −106/−100 |
|
T11988 |
26838-26872 |
Entity |
denotes |
of the two AP-1 sites at −106/−100 |
|
T12033 |
26849-26853 |
Protein |
denotes |
AP-1 |
|
T12037 |
26936-26946 |
Protein |
denotes |
luciferase |
|
T12020 |
26961-26989 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T12019 |
26972-26980 |
Protein |
denotes |
SerpinB2 |
|
T12006 |
27016-27021 |
Protein |
denotes |
C/EBP |
|
T12026 |
27042-27049 |
Protein |
denotes |
the CRE |
|
T12017 |
27059-27063 |
Protein |
denotes |
AP-1 |
|
T12030 |
27101-27104 |
Entity |
denotes |
LPS |
|
T11983 |
27134-27164 |
Entity |
denotes |
the SerpinB2 proximal promoter |
|
T12016 |
27138-27146 |
Protein |
denotes |
SerpinB2 |
|
T12791 |
27167-27184 |
Entity |
denotes |
The C/EBP Element |
|
T12789 |
27171-27176 |
Protein |
denotes |
C/EBP |
|
T12765 |
27194-27253 |
Entity |
denotes |
by an LPS-induced Nuclear Factor from RAW 264.7 Macrophages |
|
T12794 |
27200-27203 |
Entity |
denotes |
LPS |
|
T12772 |
27232-27253 |
Entity |
denotes |
RAW 264.7 Macrophages |
|
T12784 |
27293-27298 |
Protein |
denotes |
C/EBP |
|
T12786 |
27389-27405 |
Entity |
denotes |
nuclear extracts |
|
T12790 |
27411-27458 |
Entity |
denotes |
untreated and LPS-treated RAW 264.7 macrophages |
|
T12766 |
27425-27436 |
Entity |
denotes |
LPS-treated |
|
T12796 |
27460-27507 |
Entity |
denotes |
Three different double stranded oligonucleotide |
|
T12788 |
27552-27587 |
Protein |
denotes |
the putative SerpinB2 C/EBP element |
|
T12774 |
27565-27573 |
Protein |
denotes |
SerpinB2 |
|
T12763 |
27614-27622 |
Protein |
denotes |
SerpinB2 |
|
T12795 |
27642-27681 |
Protein |
denotes |
the same mutation as in pGLmP-539mC/EBP |
|
T12777 |
27667-27671 |
Protein |
denotes |
GLmP |
|
T12787 |
27690-27714 |
Entity |
denotes |
the rat albumin promoter |
|
T12781 |
27698-27705 |
Protein |
denotes |
albumin |
|
T12793 |
27733-27736 |
Protein |
denotes |
DEI |
|
T12799 |
27756-27790 |
Binding |
denotes |
a high affinity C/EBP binding site |
|
T12770 |
27756-27790 |
Entity |
denotes |
a high affinity C/EBP binding site |
|
T12785 |
27772-27777 |
Protein |
denotes |
C/EBP |
|
T12773 |
27841-27870 |
Entity |
denotes |
DNA-nuclear protein complexes |
|
T12771 |
27921-27923 |
Entity |
denotes |
II |
|
T12769 |
27940-27949 |
Entity |
denotes |
complexes |
|
T12762 |
28025-28032 |
Entity |
denotes |
complex |
|
T12783 |
28045-28051 |
Entity |
denotes |
by LPS |
|
T12767 |
28053-28078 |
Entity |
denotes |
The LPS-inducible complex |
|
T12792 |
28113-28118 |
Protein |
denotes |
C/EBP |
|
T12782 |
28206-28222 |
Entity |
denotes |
oligonucleotide, |
|
T12798 |
28298-28357 |
Binding |
denotes |
of a known C/EBP binding site from the rat albumin promoter |
|
T12780 |
28298-28357 |
Entity |
denotes |
of a known C/EBP binding site from the rat albumin promoter |
|
T12759 |
28309-28314 |
Protein |
denotes |
C/EBP |
|
T12764 |
28333-28357 |
Entity |
denotes |
the rat albumin promoter |
|
T12778 |
28341-28348 |
Protein |
denotes |
albumin |
|
T12775 |
28395-28422 |
Entity |
denotes |
the mutated oligonucleotide |
|
T12797 |
28449-28638 |
Binding |
denotes |
Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors |
|
T12779 |
28483-28515 |
Entity |
denotes |
the putative SerpinB2 C/EBP site |
|
T12768 |
28483-28515 |
Protein |
denotes |
the putative SerpinB2 C/EBP site |
|
T12776 |
28496-28504 |
Protein |
denotes |
SerpinB2 |
|
T12760 |
28535-28638 |
Entity |
denotes |
a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors |
|
T12761 |
28601-28606 |
Protein |
denotes |
C/EBP |
|
T24313 |
28725-28768 |
Entity |
denotes |
the murine SerpinB2 proximal promoter C/EBP |
|
T24331 |
28736-28744 |
Protein |
denotes |
SerpinB2 |
|
T24316 |
28765-28768 |
Protein |
denotes |
EBP |
|
T24308 |
28769-28773 |
Entity |
denotes |
site |
|
T24322 |
28783-28790 |
Protein |
denotes |
C/EBP-β |
|
T24309 |
28806-28822 |
Entity |
denotes |
nuclear extracts |
|
T24325 |
28847-28864 |
Entity |
denotes |
10 hr LPS treated |
|
T24310 |
28866-28869 |
Entity |
denotes |
LPS |
|
T24332 |
28976-28984 |
Protein |
denotes |
SerpinB2 |
|
T24323 |
28976-28990 |
Protein |
denotes |
SerpinB2 C/EBP |
|
T24311 |
29004-29016 |
Protein |
denotes |
mutant C/EBP |
|
T24318 |
29018-29023 |
Protein |
denotes |
C/EBP |
|
T24328 |
29018-29028 |
Entity |
denotes |
C/EBP site |
|
T24315 |
29037-29098 |
Entity |
denotes |
the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) |
|
T24312 |
29037-29098 |
Protein |
denotes |
the rat albumin promoter DEI region C/EBP (rat albumin C/EBP) |
|
T24327 |
29045-29052 |
Protein |
denotes |
albumin |
|
T24307 |
29062-29065 |
Protein |
denotes |
DEI |
|
T24319 |
29080-29097 |
Protein |
denotes |
rat albumin C/EBP |
|
T24320 |
29084-29091 |
Protein |
denotes |
albumin |
|
T24314 |
29148-29206 |
Entity |
denotes |
the radiolabelled murine SerpinB2 promoter −212/−185 probe |
|
T24326 |
29173-29181 |
Protein |
denotes |
SerpinB2 |
|
T24324 |
29257-29292 |
Entity |
denotes |
stranded oligonucleotides described |
|
T24330 |
29328-29356 |
Entity |
denotes |
of the DNA-protein complexes |
|
T24317 |
29462-29485 |
Protein |
denotes |
specific C/EBP antibody |
|
T24321 |
29471-29476 |
Protein |
denotes |
C/EBP |
|
T24329 |
29487-29512 |
Entity |
denotes |
The LPS-inducible complex |
|
T13587 |
29546-29553 |
Protein |
denotes |
C/EBP-β |
|
T13572 |
29559-29570 |
Entity |
denotes |
LPS-induced |
|
T13591 |
29604-29609 |
Protein |
denotes |
C/EBP |
|
T13565 |
29618-29651 |
Entity |
denotes |
of the SerpinB2 Proximal Promoter |
|
T13586 |
29625-29633 |
Protein |
denotes |
SerpinB2 |
|
T13570 |
29656-29661 |
Protein |
denotes |
C/EBP |
|
T13568 |
29678-29685 |
Entity |
denotes |
leucine |
|
T13576 |
29819-29850 |
Protein |
denotes |
the C/EBP transcription factors |
|
T13585 |
29823-29828 |
Protein |
denotes |
C/EBP |
|
T13575 |
29949-29956 |
Protein |
denotes |
C/EBP-α |
|
T13590 |
29958-29965 |
Protein |
denotes |
C/EBP-β |
|
T13579 |
29967-29974 |
Protein |
denotes |
C/EBP-δ |
|
T13580 |
29979-29986 |
Protein |
denotes |
C/EBP-ε |
|
T13563 |
30003-30016 |
Entity |
denotes |
myeloid cells |
|
T13557 |
30045-30122 |
Entity |
denotes |
differentiating myeloid cells depending on the extracellular environment [61] |
|
T13564 |
30092-30105 |
Entity |
denotes |
extracellular |
|
T13583 |
30143-30148 |
Protein |
denotes |
C/EBP |
|
T13571 |
30143-30157 |
Protein |
denotes |
C/EBP proteins |
|
T13569 |
30189-30230 |
Entity |
denotes |
of the different nucleo-protein complexes |
|
T13559 |
30189-30230 |
Protein |
denotes |
of the different nucleo-protein complexes |
|
T13578 |
30252-30278 |
Entity |
denotes |
the LPS-inducible complex, |
|
T13582 |
30315-30343 |
Protein |
denotes |
the nucleo-protein complexes |
|
T13567 |
30315-30343 |
Entity |
denotes |
the nucleo-protein complexes |
|
T13562 |
30349-30359 |
Entity |
denotes |
antibodies |
|
T13588 |
30373-30380 |
Protein |
denotes |
C/EBP-α |
|
T13558 |
30382-30389 |
Protein |
denotes |
C/EBP-β |
|
T13589 |
30391-30398 |
Protein |
denotes |
C/EBP-δ |
|
T13592 |
30403-30410 |
Protein |
denotes |
C/EBP-ε |
|
T13584 |
30417-30425 |
Protein |
denotes |
antibody |
|
T13574 |
30474-30499 |
Protein |
denotes |
of the respective protein |
|
T13555 |
30527-30556 |
Protein |
denotes |
antibody with nuclear extract |
|
T13573 |
30541-30556 |
Entity |
denotes |
nuclear extract |
|
T13566 |
30606-30621 |
Entity |
denotes |
Only antibodies |
|
T13556 |
30630-30637 |
Protein |
denotes |
C/EBP-β |
|
T13581 |
30662-30700 |
Entity |
denotes |
of the LPS-inducible complex (Fig. 5C) |
|
T13560 |
30742-30753 |
Entity |
denotes |
LPS-induced |
|
T13577 |
30771-30776 |
Protein |
denotes |
C/EBP |
|
T13561 |
30806-30813 |
Protein |
denotes |
C/EBP-β |
|
T14517 |
30816-30823 |
Protein |
denotes |
C/EBP-β |
|
T14534 |
30855-30866 |
Entity |
denotes |
LPS-induced |
|
T14535 |
30855-30875 |
Protein |
denotes |
LPS-induced SerpinB2 |
|
T14500 |
30876-30880 |
Protein |
denotes |
mRNA |
|
T14553 |
30876-30936 |
Gene_expression |
denotes |
mRNA Expression in MEFs and Inflammatory Primary Macrophages |
|
T14552 |
30876-30936 |
Transcription |
denotes |
mRNA Expression in MEFs and Inflammatory Primary Macrophages |
|
T14533 |
30895-30899 |
Protein |
denotes |
MEFs |
|
T14528 |
30904-30936 |
Entity |
denotes |
Inflammatory Primary Macrophages |
|
T14522 |
30967-30977 |
Protein |
denotes |
of C/EBP-β |
|
T14509 |
30981-31000 |
Protein |
denotes |
endogenous SerpinB2 |
|
T14505 |
31001-31005 |
Protein |
denotes |
mRNA |
|
T14551 |
31001-31036 |
Gene_expression |
denotes |
mRNA expression in response to LPS, |
|
T14550 |
31001-31036 |
Transcription |
denotes |
mRNA expression in response to LPS, |
|
T14515 |
31049-31073 |
Protein |
denotes |
C/EBP-β-null (Cebpb −/−) |
|
T14508 |
31078-31104 |
Protein |
denotes |
wild-type MEFs (Cebpb+/+), |
|
T14524 |
31149-31167 |
Protein |
denotes |
endogenous C/EBP-β |
|
T14520 |
31169-31183 |
Protein |
denotes |
Wild-type MEFs |
|
T14525 |
31206-31225 |
Protein |
denotes |
endogenous SerpinB2 |
|
T14530 |
31242-31252 |
Protein |
denotes |
of C/EBP-β |
|
T14548 |
31264-31299 |
Gene_expression |
denotes |
endogenous SerpinB2 mRNA expression |
|
T14514 |
31275-31283 |
Protein |
denotes |
SerpinB2 |
|
T14531 |
31275-31288 |
Protein |
denotes |
SerpinB2 mRNA |
|
T14527 |
31301-31304 |
Entity |
denotes |
LPS |
|
T14541 |
31301-31373 |
Positive_regulation |
denotes |
LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
|
T14540 |
31316-31373 |
Positive_regulation |
denotes |
an increase in SerpinB2 mRNA expression in wild-type MEFs |
|
T14545 |
31328-31355 |
Gene_expression |
denotes |
in SerpinB2 mRNA expression |
|
T14504 |
31331-31339 |
Protein |
denotes |
SerpinB2 |
|
T14501 |
31331-31344 |
Protein |
denotes |
SerpinB2 mRNA |
|
T14507 |
31359-31373 |
Protein |
denotes |
wild-type MEFs |
|
T14532 |
31375-31378 |
Protein |
denotes |
Fig |
|
T14547 |
31385-31469 |
Negative_regulation |
denotes |
whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
|
T14546 |
31385-31469 |
Negative_regulation |
denotes |
whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
|
T14513 |
31393-31396 |
Entity |
denotes |
LPS |
|
T14539 |
31393-31416 |
Positive_regulation |
denotes |
LPS-stimulated SerpinB2 |
|
T14529 |
31408-31416 |
Protein |
denotes |
SerpinB2 |
|
T14506 |
31417-31421 |
Protein |
denotes |
mRNA |
|
T14543 |
31417-31432 |
Transcription |
denotes |
mRNA expression |
|
T14542 |
31417-31432 |
Gene_expression |
denotes |
mRNA expression |
|
T14521 |
31463-31469 |
Protein |
denotes |
Cebpb− |
|
T14502 |
31472-31476 |
Protein |
denotes |
MEFs |
|
T14503 |
31554-31602 |
Entity |
denotes |
thioglycollate-elicited inflammatory macrophages |
|
T14519 |
31612-31619 |
Protein |
denotes |
C/EBP-β |
|
T14544 |
31612-31630 |
Gene_expression |
denotes |
C/EBP-β expression |
|
T14523 |
31725-31730 |
Protein |
denotes |
MEFs, |
|
T14516 |
31753-31764 |
Entity |
denotes |
LPS-induced |
|
T14538 |
31753-31789 |
Gene_expression |
denotes |
LPS-induced SerpinB2 mRNA expression |
|
T14537 |
31753-31863 |
Negative_regulation |
denotes |
LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages |
|
T14497 |
31765-31773 |
Protein |
denotes |
SerpinB2 |
|
T14510 |
31765-31778 |
Protein |
denotes |
SerpinB2 mRNA |
|
T14511 |
31821-31828 |
Protein |
denotes |
C/EBP-β |
|
T14526 |
31829-31863 |
Entity |
denotes |
deficient inflammatory macrophages |
|
T14512 |
31865-31868 |
Protein |
denotes |
Fig |
|
T14518 |
31903-31910 |
Protein |
denotes |
C/EBP-β |
|
T14536 |
31923-32009 |
Regulation |
denotes |
for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
|
T14549 |
31937-32009 |
Transcription |
denotes |
constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
|
T14498 |
31982-32009 |
Protein |
denotes |
of endogenous SerpinB2 mRNA |
|
T14499 |
31996-32004 |
Protein |
denotes |
SerpinB2 |
|
T25028 |
32055-32062 |
Protein |
denotes |
C/EBP-β |
|
T25032 |
32076-32133 |
Gene_expression |
denotes |
for constitutive and LPS-induced SerpinB2 mRNA expression |
|
T25018 |
32097-32108 |
Entity |
denotes |
LPS-induced |
|
T25020 |
32109-32117 |
Protein |
denotes |
SerpinB2 |
|
T25021 |
32109-32122 |
Protein |
denotes |
SerpinB2 mRNA |
|
T25015 |
32150-32158 |
Protein |
denotes |
SerpinB2 |
|
T25003 |
32150-32163 |
Protein |
denotes |
SerpinB2 mRNA |
|
T25031 |
32150-32174 |
Gene_expression |
denotes |
SerpinB2 mRNA expression |
|
T25035 |
32150-32199 |
Negative_regulation |
denotes |
SerpinB2 mRNA expression is abrogated in Cebpb−/− |
|
T25001 |
32200-32204 |
Protein |
denotes |
MEFs |
|
T25023 |
32214-32230 |
Protein |
denotes |
to Cebpb+/+ MEFs |
|
T25005 |
32259-32265 |
Entity |
denotes |
of LPS |
|
T25022 |
32267-32271 |
Protein |
denotes |
qPCR |
|
T25026 |
32281-32299 |
Protein |
denotes |
of murine SerpinB2 |
|
T25011 |
32300-32304 |
Protein |
denotes |
mRNA |
|
T25034 |
32300-32337 |
Gene_expression |
denotes |
mRNA expression in untreated Cebpb+/+ |
|
T25033 |
32300-32337 |
Transcription |
denotes |
mRNA expression in untreated Cebpb+/+ |
|
T25008 |
32342-32348 |
Protein |
denotes |
Cebpb− |
|
T25000 |
32351-32356 |
Protein |
denotes |
MEFs, |
|
T24998 |
32383-32386 |
Entity |
denotes |
LPS |
|
T25029 |
32439-32447 |
Protein |
denotes |
SerpinB2 |
|
T25030 |
32475-32482 |
Protein |
denotes |
C/EBP-β |
|
T24999 |
32483-32517 |
Entity |
denotes |
deficient inflammatory macrophages |
|
T25007 |
32519-32575 |
Entity |
denotes |
Thioglycollate-elicited peritoneal macrophages (TG macs) |
|
T25014 |
32567-32569 |
Protein |
denotes |
TG |
|
T25006 |
32567-32574 |
Protein |
denotes |
TG macs |
|
T25012 |
32646-32651 |
Protein |
denotes |
CEBPB |
|
T25013 |
32730-32735 |
Protein |
denotes |
Cebpb |
|
T25019 |
32751-32784 |
Entity |
denotes |
Lentiviral transduced macrophages |
|
T25025 |
32806-32809 |
Entity |
denotes |
LPS |
|
T25024 |
32826-32831 |
Protein |
denotes |
4 hrs |
|
T25017 |
32887-32908 |
Protein |
denotes |
of endogenous C/EBP-β |
|
T25002 |
32941-32946 |
Protein |
denotes |
Cebpb |
|
T25009 |
32967-32972 |
Protein |
denotes |
CEBPB |
|
T25010 |
32987-32991 |
Protein |
denotes |
qPCR |
|
T25036 |
32987-33087 |
Gene_expression |
denotes |
qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages |
|
T25027 |
33011-33019 |
Protein |
denotes |
SerpinB2 |
|
T25016 |
33011-33024 |
Protein |
denotes |
SerpinB2 mRNA |
|
T25004 |
33039-33087 |
Entity |
denotes |
the lentiviral transduced peritoneal macrophages |
|
T15283 |
33226-33233 |
Protein |
denotes |
C/EBP-β |
|
T15326 |
33226-33268 |
Binding |
denotes |
C/EBP-β Binds the Murine SerpinB2 Proximal |
|
T15294 |
33240-33268 |
Protein |
denotes |
the Murine SerpinB2 Proximal |
|
T15304 |
33269-33312 |
Entity |
denotes |
Promoter in vivo in an LPS-inducible Manner |
|
T15327 |
33351-33373 |
Binding |
denotes |
of C/EBP-β recruitment |
|
T15270 |
33354-33361 |
Protein |
denotes |
C/EBP-β |
|
T15305 |
33377-33405 |
Entity |
denotes |
the murine SerpinB2 promoter |
|
T15311 |
33388-33396 |
Protein |
denotes |
SerpinB2 |
|
T15275 |
33421-33472 |
Entity |
denotes |
LPS in vivo by chromatin immunoprecipitation (ChIP) |
|
T15312 |
33436-33445 |
Entity |
denotes |
chromatin |
|
T15282 |
33511-33514 |
Entity |
denotes |
LPS |
|
T15273 |
33519-33530 |
Protein |
denotes |
up to 8 hrs |
|
T15295 |
33532-33549 |
Entity |
denotes |
soluble chromatin |
|
T15289 |
33573-33588 |
Entity |
denotes |
with antibodies |
|
T15269 |
33597-33618 |
Protein |
denotes |
DNA binding proteins, |
|
T15281 |
33623-33639 |
Entity |
denotes |
the enriched DNA |
|
T15272 |
33680-33684 |
Protein |
denotes |
qPCR |
|
T15274 |
33691-33699 |
Protein |
denotes |
SerpinB2 |
|
T15286 |
33700-33726 |
Entity |
denotes |
proximal promoter specific |
|
T15318 |
33785-33792 |
Protein |
denotes |
C/EBP-β |
|
T15310 |
33822-33843 |
Entity |
denotes |
the SerpinB2 promoter |
|
T15317 |
33826-33834 |
Protein |
denotes |
SerpinB2 |
|
T15319 |
33879-33896 |
Entity |
denotes |
with the promoter |
|
T15278 |
33913-33924 |
Entity |
denotes |
macrophages |
|
T15280 |
33965-33968 |
Entity |
denotes |
LPS |
|
T15292 |
34027-34032 |
Protein |
denotes |
8 hrs |
|
T15279 |
34034-34037 |
Protein |
denotes |
Fig |
|
T15298 |
34060-34067 |
Protein |
denotes |
C/EBP-β |
|
T15321 |
34060-34083 |
Phosphorylation |
denotes |
C/EBP-β phosphorylation |
|
T15320 |
34123-34154 |
Positive_regulation |
denotes |
transactivate target genes [38] |
|
T15299 |
34137-34154 |
Protein |
denotes |
target genes [38] |
|
T15302 |
34199-34288 |
Entity |
denotes |
the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217) |
|
T15316 |
34203-34211 |
Protein |
denotes |
SerpinB2 |
|
T15300 |
34233-34288 |
Entity |
denotes |
the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217) |
|
T15309 |
34257-34264 |
Protein |
denotes |
C/EBP-β |
|
T15288 |
34274-34287 |
Protein |
denotes |
p-C/EBP-βT217 |
|
T15290 |
34316-34339 |
Entity |
denotes |
with cell survival [65] |
|
T15276 |
34341-34354 |
Protein |
denotes |
p-C/EBP-βT217 |
|
T15325 |
34341-34413 |
Binding |
denotes |
p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter |
|
T15301 |
34380-34413 |
Entity |
denotes |
to the SerpinB2 proximal promoter |
|
T15307 |
34387-34395 |
Protein |
denotes |
SerpinB2 |
|
T15284 |
34445-34448 |
Entity |
denotes |
LPS |
|
T15296 |
34462-34465 |
Protein |
denotes |
Fig |
|
T15287 |
34492-34500 |
Protein |
denotes |
C/EBP-β, |
|
T15324 |
34501-34564 |
Binding |
denotes |
the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal |
|
T15323 |
34501-34564 |
Binding |
denotes |
the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal |
|
T15303 |
34522-34538 |
Protein |
denotes |
of p-C/EBP-βT217 |
|
T15313 |
34539-34564 |
Protein |
denotes |
for the SerpinB2 proximal |
|
T15291 |
34565-34639 |
Entity |
denotes |
promoter diminished with LPS stimulation at later timepoints (4 and 8 hrs) |
|
T15306 |
34590-34593 |
Entity |
denotes |
LPS |
|
T15314 |
34633-34638 |
Protein |
denotes |
8 hrs |
|
T15285 |
34640-34643 |
Protein |
denotes |
Fig |
|
T15308 |
34697-34704 |
Protein |
denotes |
C/EBP-β |
|
T15277 |
34709-34722 |
Protein |
denotes |
p-C/EBP-βT217 |
|
T15322 |
34709-34734 |
Binding |
denotes |
p-C/EBP-βT217 recruitment |
|
T15315 |
34754-34773 |
Entity |
denotes |
T217-phosphorylated |
|
T15328 |
34754-34781 |
Phosphorylation |
denotes |
T217-phosphorylated C/EBP-β |
|
T15271 |
34754-34781 |
Protein |
denotes |
T217-phosphorylated C/EBP-β |
|
T15293 |
34838-34859 |
Entity |
denotes |
the SerpinB2 promoter |
|
T15297 |
34842-34850 |
Protein |
denotes |
SerpinB2 |
|
T25724 |
34952-34959 |
Protein |
denotes |
C/EBP-β |
|
T25720 |
34979-35015 |
Entity |
denotes |
the murine SerpinB2 promoter in vivo |
|
T25733 |
34990-34998 |
Protein |
denotes |
SerpinB2 |
|
T25709 |
35051-35072 |
Protein |
denotes |
the SerpinB2 proximal |
|
T25714 |
35073-35089 |
Entity |
denotes |
promoter in vivo |
|
T25717 |
35108-35117 |
Entity |
denotes |
chromatin |
|
T25705 |
35152-35172 |
Entity |
denotes |
RAW264.7 macrophages |
|
T25723 |
35213-35219 |
Entity |
denotes |
of LPS |
|
T25738 |
35248-35257 |
Entity |
denotes |
chromatin |
|
T25735 |
35294-35304 |
Entity |
denotes |
antibodies |
|
T25721 |
35313-35320 |
Protein |
denotes |
C/EBP-β |
|
T25711 |
35324-35333 |
Protein |
denotes |
p-C/EBP-β |
|
T25719 |
35335-35339 |
Entity |
denotes |
T217 |
|
T25704 |
35342-35359 |
Entity |
denotes |
Soluble chromatin |
|
T25726 |
35396-35411 |
Entity |
denotes |
with antibodies |
|
T25718 |
35420-35446 |
Protein |
denotes |
C/EBP-β, p-C/EBP-β (T217), |
|
T25729 |
35420-35464 |
Protein |
denotes |
C/EBP-β, p-C/EBP-β (T217), RNA Polymerase II |
|
T25713 |
35429-35445 |
Protein |
denotes |
p-C/EBP-β (T217) |
|
T25707 |
35440-35444 |
Entity |
denotes |
T217 |
|
T25732 |
35487-35489 |
Protein |
denotes |
Ig |
|
T25710 |
35492-35496 |
Protein |
denotes |
rIgG |
|
T25725 |
35519-35522 |
Protein |
denotes |
PCR |
|
T25708 |
35543-35554 |
Entity |
denotes |
ChIP assays |
|
T25716 |
35568-35576 |
Protein |
denotes |
SerpinB2 |
|
T25739 |
35586-35603 |
Entity |
denotes |
promoter-specific |
|
T25730 |
35681-35711 |
Protein |
denotes |
the SerpinB2 promoter suggests |
|
T25741 |
35681-35758 |
Transcription |
denotes |
the SerpinB2 promoter suggests active transcription following LPS stimulation |
|
T25734 |
35694-35702 |
Entity |
denotes |
promoter |
|
T25737 |
35743-35746 |
Entity |
denotes |
LPS |
|
T25722 |
35879-35882 |
Protein |
denotes |
PCR |
|
T25736 |
35892-35939 |
Entity |
denotes |
of chromatin immunoprecipitated with antibodies |
|
T25727 |
35929-35939 |
Entity |
denotes |
antibodies |
|
T25712 |
35948-35955 |
Protein |
denotes |
C/EBP-β |
|
T25706 |
35957-35973 |
Protein |
denotes |
p-C/EBP-β (T217) |
|
T25715 |
35968-35972 |
Entity |
denotes |
T217 |
|
T25740 |
35979-35995 |
Regulation |
denotes |
the rIgG control |
|
T25728 |
35983-35987 |
Protein |
denotes |
rIgG |
|
T25731 |
36034-36038 |
Protein |
denotes |
rIgG |
|
T16094 |
36072-36079 |
Protein |
denotes |
C/EBP-β |
|
T16102 |
36072-36145 |
Positive_regulation |
denotes |
C/EBP-β Promotes LPS-inducible Murine SerpinB2 Proximal Promoter Activity |
|
T16073 |
36110-36118 |
Protein |
denotes |
SerpinB2 |
|
T16093 |
36128-36136 |
Entity |
denotes |
Promoter |
|
T16105 |
36146-36252 |
Binding |
denotes |
Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
|
T16097 |
36152-36159 |
Protein |
denotes |
C/EBP-β |
|
T16075 |
36166-36199 |
Entity |
denotes |
to the SerpinB2 proximal promoter |
|
T16078 |
36173-36181 |
Protein |
denotes |
SerpinB2 |
|
T16100 |
36299-36306 |
Protein |
denotes |
C/EBP-β |
|
T16088 |
36362-36383 |
Entity |
denotes |
the SerpinB2 promoter |
|
T16082 |
36366-36374 |
Protein |
denotes |
SerpinB2 |
|
T16096 |
36387-36392 |
Entity |
denotes |
cells |
|
T16074 |
36408-36411 |
Entity |
denotes |
LPS |
|
T16080 |
36425-36446 |
Protein |
denotes |
of endogenous C/EBP-β |
|
T16103 |
36447-36497 |
Regulation |
denotes |
to direct transcription from the SerpinB2 proximal |
|
T16098 |
36476-36497 |
Protein |
denotes |
the SerpinB2 proximal |
|
T16092 |
36498-36506 |
Entity |
denotes |
promoter |
|
T16091 |
36544-36548 |
Protein |
denotes |
GLmP |
|
T16072 |
36560-36588 |
Protein |
denotes |
SerpinB2 luciferase reporter |
|
T16099 |
36604-36609 |
Protein |
denotes |
Cebpb |
|
T16085 |
36617-36623 |
Protein |
denotes |
Cebpb− |
|
T16101 |
36626-36630 |
Protein |
denotes |
MEFs |
|
T16087 |
36646-36660 |
Entity |
denotes |
LPS-stimulated |
|
T16104 |
36646-36687 |
Positive_regulation |
denotes |
LPS-stimulated SerpinB2 promoter activity |
|
T16086 |
36661-36669 |
Protein |
denotes |
SerpinB2 |
|
T16077 |
36661-36678 |
Entity |
denotes |
SerpinB2 promoter |
|
T16090 |
36728-36732 |
Protein |
denotes |
MEFs |
|
T16076 |
36750-36756 |
Protein |
denotes |
Cebpb− |
|
T16083 |
36759-36763 |
Protein |
denotes |
MEFs |
|
T16089 |
36765-36768 |
Protein |
denotes |
Fig |
|
T16084 |
36786-36809 |
Protein |
denotes |
that endogenous C/EBP-β |
|
T16079 |
36826-36837 |
Entity |
denotes |
LPS-induced |
|
T16081 |
36826-36873 |
Protein |
denotes |
LPS-induced SerpinB2 proximal promoter activity |
|
T16095 |
36856-36864 |
Entity |
denotes |
promoter |
|
T26703 |
36919-36926 |
Protein |
denotes |
C/EBP-β |
|
T26737 |
36944-36952 |
Protein |
denotes |
SerpinB2 |
|
T26728 |
36944-36970 |
Entity |
denotes |
SerpinB2 proximal promoter |
|
T26727 |
36985-37015 |
Entity |
denotes |
The SerpinB2 proximal promoter |
|
T26699 |
36989-36997 |
Protein |
denotes |
SerpinB2 |
|
T26721 |
37046-37060 |
Entity |
denotes |
LPS-stimulated |
|
T26746 |
37046-37074 |
Positive_regulation |
denotes |
LPS-stimulated Cebpb+/+ MEFs |
|
T26696 |
37046-37074 |
Protein |
denotes |
LPS-stimulated Cebpb+/+ MEFs |
|
T26735 |
37086-37091 |
Protein |
denotes |
Cebpb |
|
T26726 |
37095-37099 |
Protein |
denotes |
MEFs |
|
T26722 |
37101-37139 |
Protein |
denotes |
Murine SerpinB2 gene promoter activity |
|
T26738 |
37108-37116 |
Protein |
denotes |
SerpinB2 |
|
T26712 |
37122-37130 |
Entity |
denotes |
promoter |
|
T26704 |
37165-37171 |
Protein |
denotes |
Cebpb− |
|
T26744 |
37174-37275 |
Gene_expression |
denotes |
MEFs expressing the pGLmP-539 SerpinB2 promoter-luciferase reporter in the presence or absence of LPS |
|
T26732 |
37174-37275 |
Protein |
denotes |
MEFs expressing the pGLmP-539 SerpinB2 promoter-luciferase reporter in the presence or absence of LPS |
|
T26730 |
37190-37241 |
Protein |
denotes |
the pGLmP-539 SerpinB2 promoter-luciferase reporter |
|
T26708 |
37195-37199 |
Protein |
denotes |
GLmP |
|
T26707 |
37269-37275 |
Entity |
denotes |
of LPS |
|
T26725 |
37289-37294 |
Entity |
denotes |
Cells |
|
T26729 |
37320-37371 |
Protein |
denotes |
the pGLmP-539 SerpinB2 promoter-luciferase reporter |
|
T26723 |
37325-37329 |
Protein |
denotes |
GLmP |
|
T26740 |
37376-37400 |
Protein |
denotes |
β-galactosidase reporter |
|
T26719 |
37415-37425 |
Protein |
denotes |
luciferase |
|
T26724 |
37446-37461 |
Protein |
denotes |
β-galactosidase |
|
T26739 |
37476-37483 |
Protein |
denotes |
C/EBP-β |
|
T26745 |
37476-37523 |
Gene_expression |
denotes |
C/EBP-β gene schematic depicting gene structure |
|
T26714 |
37476-37523 |
Protein |
denotes |
C/EBP-β gene schematic depicting gene structure |
|
T26700 |
37509-37513 |
Protein |
denotes |
gene |
|
T26702 |
37528-37550 |
Entity |
denotes |
phospho-acceptor sites |
|
T26694 |
37536-37544 |
Entity |
denotes |
acceptor |
|
T26742 |
37556-37658 |
Regulation |
denotes |
Phosphorylation of C/EBP-β at Serine 64 negatively regulates LPS-stimulated SerpinB2 promoter activity |
|
T26716 |
37572-37582 |
Protein |
denotes |
of C/EBP-β |
|
T26709 |
37586-37595 |
Entity |
denotes |
Serine 64 |
|
T26706 |
37617-37631 |
Entity |
denotes |
LPS-stimulated |
|
T26743 |
37617-37658 |
Positive_regulation |
denotes |
LPS-stimulated SerpinB2 promoter activity |
|
T26713 |
37632-37640 |
Protein |
denotes |
SerpinB2 |
|
T26718 |
37632-37649 |
Entity |
denotes |
SerpinB2 promoter |
|
T26705 |
37660-37666 |
Protein |
denotes |
Cebpb− |
|
T26733 |
37669-37672 |
Protein |
denotes |
MEF |
|
T26731 |
37728-37745 |
Protein |
denotes |
wild-type C/EBP-β |
|
T26695 |
37763-37796 |
Protein |
denotes |
C/EBP-β phospho-acceptor mutants, |
|
T26741 |
37808-37859 |
Protein |
denotes |
the pGLmP-539 SerpinB2 promoter-luciferase reporter |
|
T26711 |
37813-37817 |
Protein |
denotes |
GLmP |
|
T26701 |
37864-37888 |
Protein |
denotes |
β-galactosidase reporter |
|
T26717 |
37919-37922 |
Entity |
denotes |
LPS |
|
T26715 |
37927-37932 |
Protein |
denotes |
4 hrs |
|
T26736 |
37934-37944 |
Protein |
denotes |
Luciferase |
|
T26734 |
37987-38002 |
Protein |
denotes |
β-galactosidase |
|
T26698 |
38076-38123 |
Protein |
denotes |
the respective C/EBP-β phospho-acceptor mutants |
|
T26710 |
38125-38159 |
Protein |
denotes |
The C/EBP-βT217A -transfected MEFs |
|
T26720 |
38129-38154 |
Protein |
denotes |
C/EBP-βT217A -transfected |
|
T26697 |
38207-38214 |
Protein |
denotes |
C/EBP-β |
|
T26693 |
38334-38347 |
Protein |
denotes |
one-way ANOVA |
|
T17633 |
38351-38453 |
Regulation |
denotes |
Phosphorylation of C/EBP-β at Serine 64 negatively Regulates LPS-stimulated SerpinB2 Promoter Activity |
|
T17561 |
38367-38377 |
Protein |
denotes |
of C/EBP-β |
|
T17569 |
38381-38390 |
Entity |
denotes |
Serine 64 |
|
T17605 |
38412-38426 |
Entity |
denotes |
LPS-stimulated |
|
T17629 |
38412-38453 |
Positive_regulation |
denotes |
LPS-stimulated SerpinB2 Promoter Activity |
|
T17577 |
38427-38435 |
Protein |
denotes |
SerpinB2 |
|
T17590 |
38427-38444 |
Entity |
denotes |
SerpinB2 Promoter |
|
T17625 |
38470-38480 |
Protein |
denotes |
of C/EBP-β |
|
T17563 |
38563-38570 |
Protein |
denotes |
C/EBP-β |
|
T17635 |
38563-38679 |
Phosphorylation |
denotes |
C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B) |
|
T17604 |
38563-38679 |
Entity |
denotes |
C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B) |
|
T17647 |
38615-38679 |
Positive_regulation |
denotes |
for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B) |
|
T17584 |
38619-38633 |
Entity |
denotes |
LPS-stimulated |
|
T17597 |
38634-38642 |
Protein |
denotes |
SerpinB2 |
|
T17627 |
38634-38660 |
Entity |
denotes |
SerpinB2 proximal promoter |
|
T17600 |
38705-38737 |
Protein |
denotes |
C/EBP-β phospho-acceptor mutants |
|
T17559 |
38760-38769 |
Entity |
denotes |
threonine |
|
T17579 |
38760-38787 |
Entity |
denotes |
threonine or serine residue |
|
T17601 |
38773-38779 |
Entity |
denotes |
serine |
|
T17618 |
38806-38813 |
Entity |
denotes |
alanine |
|
T17592 |
38826-38892 |
Protein |
denotes |
the pGLmP-539 murine SerpinB2 luciferase reporter in Cebpb−/− MEFs |
|
T17614 |
38832-38835 |
Protein |
denotes |
LmP |
|
T17551 |
38879-38892 |
Protein |
denotes |
Cebpb−/− MEFs |
|
T17649 |
38894-38938 |
Gene_expression |
denotes |
Re-expression of wild-type C/EBP-β in Cebpb− |
|
T17574 |
38908-38928 |
Protein |
denotes |
of wild-type C/EBP-β |
|
T17578 |
38932-38938 |
Protein |
denotes |
Cebpb− |
|
T17554 |
38941-38945 |
Protein |
denotes |
MEFs |
|
T17631 |
38941-39038 |
Positive_regulation |
denotes |
MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS |
|
T17589 |
38971-38979 |
Protein |
denotes |
SerpinB2 |
|
T17634 |
38971-39015 |
Gene_expression |
denotes |
SerpinB2 luciferase reporter gene expression |
|
T17628 |
38980-38990 |
Protein |
denotes |
luciferase |
|
T17622 |
39000-39004 |
Protein |
denotes |
gene |
|
T17570 |
39035-39038 |
Entity |
denotes |
LPS |
|
T17588 |
39051-39054 |
Protein |
denotes |
Fig |
|
T17564 |
39093-39103 |
Protein |
denotes |
of C/EBP-β |
|
T17585 |
39107-39118 |
Entity |
denotes |
LPS-induced |
|
T17644 |
39107-39146 |
Transcription |
denotes |
LPS-induced SerpinB2 gene transcription |
|
T17572 |
39119-39127 |
Protein |
denotes |
SerpinB2 |
|
T17593 |
39119-39132 |
Protein |
denotes |
SerpinB2 gene |
|
T17648 |
39148-39198 |
Gene_expression |
denotes |
Expression of the C/EBP-β phospho-acceptor mutant, |
|
T17603 |
39159-39198 |
Protein |
denotes |
of the C/EBP-β phospho-acceptor mutant, |
|
T17599 |
39199-39221 |
Protein |
denotes |
C/EBPβT217A, in Cebpb− |
|
T17624 |
39215-39221 |
Protein |
denotes |
Cebpb− |
|
T17565 |
39224-39228 |
Protein |
denotes |
MEFs |
|
T17609 |
39260-39268 |
Protein |
denotes |
SerpinB2 |
|
T17626 |
39260-39277 |
Entity |
denotes |
SerpinB2 promoter |
|
T17573 |
39301-39318 |
Protein |
denotes |
wild-type C/EBP-β |
|
T17567 |
39320-39323 |
Protein |
denotes |
Fig |
|
T17571 |
39369-39379 |
Protein |
denotes |
of C/EBP-β |
|
T17594 |
39383-39387 |
Entity |
denotes |
T217 |
|
T17621 |
39431-39439 |
Protein |
denotes |
SerpinB2 |
|
T17568 |
39431-39448 |
Entity |
denotes |
SerpinB2 promoter |
|
T17602 |
39473-39476 |
Entity |
denotes |
LPS |
|
T17607 |
39478-39485 |
Protein |
denotes |
C/EBP-β |
|
T17619 |
39495-39527 |
Entity |
denotes |
additional phosphorylation sites |
|
T17560 |
39545-39555 |
Protein |
denotes |
C/EBP-βS64 |
|
T17642 |
39589-39648 |
Regulation |
denotes |
in modulating C/EBP-β-dependent SerpinB2 gene transcription |
|
T17611 |
39603-39620 |
Protein |
denotes |
C/EBP-β-dependent |
|
T17650 |
39603-39648 |
Transcription |
denotes |
C/EBP-β-dependent SerpinB2 gene transcription |
|
T17645 |
39603-39648 |
Regulation |
denotes |
C/EBP-β-dependent SerpinB2 gene transcription |
|
T17583 |
39621-39629 |
Protein |
denotes |
SerpinB2 |
|
T17617 |
39621-39634 |
Protein |
denotes |
SerpinB2 gene |
|
T17598 |
39650-39661 |
Protein |
denotes |
C/EBP-βT188 |
|
T17638 |
39679-39696 |
Regulation |
denotes |
regulating DAPK1, |
|
T17620 |
39690-39696 |
Protein |
denotes |
DAPK1, |
|
T17582 |
39697-39780 |
Protein |
denotes |
an IFNγ-inducible gene involved in the regulation of cell cycle and apoptosis [38], |
|
T17550 |
39842-39852 |
Protein |
denotes |
C/EBP-βS64 |
|
T17637 |
39866-39932 |
Transcription |
denotes |
for LPS-induced transcription of the cytokines IL-6 and MCP-1 [64] |
|
T17636 |
39866-39932 |
Transcription |
denotes |
for LPS-induced transcription of the cytokines IL-6 and MCP-1 [64] |
|
T17586 |
39870-39881 |
Entity |
denotes |
LPS-induced |
|
T17595 |
39899-39917 |
Protein |
denotes |
the cytokines IL-6 |
|
T17587 |
39899-39917 |
Protein |
denotes |
the cytokines IL-6 |
|
T17553 |
39922-39927 |
Protein |
denotes |
MCP-1 |
|
T17606 |
39945-39953 |
Protein |
denotes |
SerpinB2 |
|
T17643 |
39945-40023 |
Regulation |
denotes |
SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
|
T17640 |
39945-40023 |
Positive_regulation |
denotes |
SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
|
T17639 |
39945-40023 |
Gene_expression |
denotes |
SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
|
T17612 |
39965-39971 |
Entity |
denotes |
by LPS |
|
T17576 |
40006-40023 |
Protein |
denotes |
to cytokines [29] |
|
T17591 |
40117-40124 |
Protein |
denotes |
C/EBP-β |
|
T17596 |
40129-40137 |
Protein |
denotes |
SerpinB2 |
|
T17558 |
40163-40191 |
Entity |
denotes |
these phospho-acceptor sites |
|
T17557 |
40177-40185 |
Entity |
denotes |
acceptor |
|
T17580 |
40211-40219 |
Protein |
denotes |
SerpinB2 |
|
T17646 |
40211-40235 |
Gene_expression |
denotes |
SerpinB2 gene expression |
|
T17575 |
40237-40261 |
Protein |
denotes |
C/EBP-βT188A-transfected |
|
T17562 |
40237-40266 |
Protein |
denotes |
C/EBP-βT188A-transfected MEFs |
|
T17615 |
40277-40285 |
Protein |
denotes |
SerpinB2 |
|
T17555 |
40277-40294 |
Entity |
denotes |
SerpinB2 promoter |
|
T17613 |
40323-40357 |
Protein |
denotes |
wild-type C/EBP-β-transfected MEFs |
|
T17549 |
40333-40352 |
Protein |
denotes |
C/EBP-β-transfected |
|
T17630 |
40367-40396 |
Gene_expression |
denotes |
the expression of C/EBP-βS64A |
|
T17610 |
40382-40396 |
Protein |
denotes |
of C/EBP-βS64A |
|
T17608 |
40409-40417 |
Protein |
denotes |
SerpinB2 |
|
T17566 |
40409-40426 |
Entity |
denotes |
SerpinB2 promoter |
|
T17556 |
40451-40454 |
Entity |
denotes |
LPS |
|
T17616 |
40456-40459 |
Protein |
denotes |
Fig |
|
T17632 |
40497-40530 |
Phosphorylation |
denotes |
phosphorylation of C/EBP-β at S64 |
|
T17623 |
40513-40523 |
Protein |
denotes |
of C/EBP-β |
|
T17552 |
40527-40530 |
Entity |
denotes |
S64 |
|
T17641 |
40539-40567 |
Regulation |
denotes |
negatively regulate SerpinB2 |
|
T17581 |
40559-40567 |
Protein |
denotes |
SerpinB2 |
|
T21024 |
40608-40619 |
Entity |
denotes |
Macrophages |
|
T20987 |
40773-40800 |
Entity |
denotes |
the bacterial endotoxin LPS |
|
T21078 |
40812-40823 |
Entity |
denotes |
macrophages |
|
T21114 |
40876-40929 |
Positive_regulation |
denotes |
massive induction of the pro-survival factor SerpinB2 |
|
T21113 |
40876-40929 |
Gene_expression |
denotes |
massive induction of the pro-survival factor SerpinB2 |
|
T21003 |
40894-40929 |
Protein |
denotes |
of the pro-survival factor SerpinB2 |
|
T20917 |
40931-40939 |
Protein |
denotes |
SerpinB2 |
|
T21061 |
40995-41005 |
Protein |
denotes |
IKKβ/NF-κB |
|
T20983 |
40995-41005 |
Protein |
denotes |
IKKβ/NF-κB |
|
T21065 |
41000-41005 |
Protein |
denotes |
NF-κB |
|
T21080 |
41051-41059 |
Entity |
denotes |
LPS [16] |
|
T20912 |
41081-41130 |
Protein |
denotes |
SerpinB2 gene transcription in response to LPS is |
|
T20936 |
41090-41094 |
Protein |
denotes |
gene |
|
T21091 |
41090-41108 |
Transcription |
denotes |
gene transcription |
|
T21004 |
41144-41174 |
Entity |
denotes |
the SerpinB2 proximal promoter |
|
T20982 |
41148-41156 |
Protein |
denotes |
SerpinB2 |
|
T20944 |
41200-41212 |
Protein |
denotes |
upon C/EBP-β |
|
T21027 |
41214-41225 |
Entity |
denotes |
LPS-induced |
|
T21097 |
41214-41233 |
Positive_regulation |
denotes |
LPS-induced C/EBP-β |
|
T21096 |
41214-41233 |
Gene_expression |
denotes |
LPS-induced C/EBP-β |
|
T20962 |
41214-41233 |
Protein |
denotes |
LPS-induced C/EBP-β |
|
T20902 |
41269-41274 |
Protein |
denotes |
C/EBP |
|
T20957 |
41295-41316 |
Protein |
denotes |
the SerpinB2 proximal |
|
T21056 |
41317-41346 |
Entity |
denotes |
promoter in vitro and in vivo |
|
T21048 |
41357-41367 |
Protein |
denotes |
of C/EBP-β |
|
T21050 |
41378-41404 |
Protein |
denotes |
constitutive SerpinB2 gene |
|
T21121 |
41378-41418 |
Transcription |
denotes |
constitutive SerpinB2 gene transcription |
|
T21070 |
41391-41399 |
Protein |
denotes |
SerpinB2 |
|
T21077 |
41444-41488 |
Entity |
denotes |
The murine SerpinB2 proximal promoter region |
|
T20986 |
41455-41463 |
Protein |
denotes |
SerpinB2 |
|
T20940 |
41497-41508 |
Entity |
denotes |
nucleotides |
|
T21057 |
41536-41540 |
Entity |
denotes |
PMA- |
|
T21083 |
41545-41578 |
Transcription |
denotes |
LPS-inducible gene transcription, |
|
T21029 |
41559-41563 |
Protein |
denotes |
gene |
|
T20905 |
41597-41600 |
Entity |
denotes |
PMA |
|
T21067 |
41652-41655 |
Entity |
denotes |
LPS |
|
T21034 |
41668-41690 |
Protein |
denotes |
of the murine SerpinB2 |
|
T20984 |
41700-41708 |
Entity |
denotes |
promoter |
|
T21036 |
41731-41734 |
Protein |
denotes |
CRE |
|
T21020 |
41743-41847 |
Protein |
denotes |
AP-1-like elements, demonstrated to mediate PMA-stimulated transcription of the human SERPINB2 gene [37] |
|
T20993 |
41787-41801 |
Entity |
denotes |
PMA-stimulated |
|
T21119 |
41787-41847 |
Transcription |
denotes |
PMA-stimulated transcription of the human SERPINB2 gene [37] |
|
T21109 |
41787-41847 |
Positive_regulation |
denotes |
PMA-stimulated transcription of the human SERPINB2 gene [37] |
|
T20989 |
41816-41847 |
Protein |
denotes |
of the human SERPINB2 gene [37] |
|
T20958 |
41829-41837 |
Protein |
denotes |
SERPINB2 |
|
T20932 |
41869-41939 |
Entity |
denotes |
the murine SerpinB2 proximal promoter between nucleotides −189 and −87 |
|
T21076 |
41880-41888 |
Protein |
denotes |
SerpinB2 |
|
T21021 |
41915-41926 |
Entity |
denotes |
nucleotides |
|
T20967 |
41941-41952 |
Entity |
denotes |
These sites |
|
T21084 |
41987-42052 |
Regulation |
denotes |
mediating PMA-inducible transcription of the murine SerpinB2 gene |
|
T21095 |
41997-42052 |
Transcription |
denotes |
PMA-inducible transcription of the murine SerpinB2 gene |
|
T21002 |
42025-42052 |
Protein |
denotes |
of the murine SerpinB2 gene |
|
T21015 |
42039-42047 |
Protein |
denotes |
SerpinB2 |
|
T21045 |
42109-42112 |
Entity |
denotes |
PMA |
|
T21017 |
42167-42222 |
Entity |
denotes |
of the murine SerpinB2 promoter containing these sites, |
|
T20907 |
42181-42189 |
Protein |
denotes |
SerpinB2 |
|
T20994 |
42210-42221 |
Entity |
denotes |
these sites |
|
T20937 |
42223-42248 |
Entity |
denotes |
most of the LPS-inducible |
|
T21026 |
42228-42248 |
Entity |
denotes |
of the LPS-inducible |
|
T20906 |
42330-42346 |
Entity |
denotes |
nucleotides −189 |
|
T21008 |
42357-42360 |
Entity |
denotes |
LPS |
|
T20922 |
42400-42405 |
Protein |
denotes |
C/EBP |
|
T21058 |
42449-42460 |
Entity |
denotes |
nucleotides |
|
T20941 |
42481-42499 |
Protein |
denotes |
the downstream CRE |
|
T21025 |
42504-42508 |
Protein |
denotes |
AP-1 |
|
T21092 |
42610-42672 |
Binding |
denotes |
between C/EBP-β and CRE binding proteins (CREB) and AP-1 [63], |
|
T20923 |
42618-42625 |
Protein |
denotes |
C/EBP-β |
|
T21006 |
42630-42633 |
Protein |
denotes |
CRE |
|
T20935 |
42642-42657 |
Protein |
denotes |
proteins (CREB) |
|
T20991 |
42652-42656 |
Protein |
denotes |
CREB |
|
T21066 |
42662-42672 |
Protein |
denotes |
AP-1 [63], |
|
T20968 |
42677-42684 |
Protein |
denotes |
C/EBP-β |
|
T21085 |
42703-42773 |
Binding |
denotes |
to physically interact with AP-1, and NF-κB to promote gene expression |
|
T20903 |
42731-42736 |
Protein |
denotes |
AP-1, |
|
T21043 |
42741-42746 |
Protein |
denotes |
NF-κB |
|
T21110 |
42750-42773 |
Positive_regulation |
denotes |
promote gene expression |
|
T20978 |
42758-42762 |
Protein |
denotes |
gene |
|
T21094 |
42758-42773 |
Gene_expression |
denotes |
gene expression |
|
T21117 |
42812-42895 |
Regulation |
denotes |
Additionally, CREB has been shown to control transcription of the C/EBP-β gene [67] |
|
T20952 |
42826-42830 |
Protein |
denotes |
CREB |
|
T21081 |
42857-42895 |
Transcription |
denotes |
transcription of the C/EBP-β gene [67] |
|
T21054 |
42871-42890 |
Protein |
denotes |
of the C/EBP-β gene |
|
T20985 |
42878-42885 |
Protein |
denotes |
C/EBP-β |
|
T20926 |
42912-42919 |
Protein |
denotes |
C/EBP-β |
|
T21093 |
42960-43021 |
Transcription |
denotes |
both constitutive and LPS-induced SerpinB2 gene transcription |
|
T20998 |
42960-43021 |
Protein |
denotes |
both constitutive and LPS-induced SerpinB2 gene transcription |
|
T20999 |
42982-42993 |
Entity |
denotes |
LPS-induced |
|
T20933 |
43003-43007 |
Protein |
denotes |
gene |
|
T21060 |
43076-43084 |
Protein |
denotes |
SerpinB2 |
|
T21032 |
43103-43107 |
Protein |
denotes |
gene |
|
T21089 |
43114-43205 |
Negative_regulation |
denotes |
induction in C/EBP-β-deficient peritoneal macrophages by LPS and IFNγ was severely impaired |
|
T20975 |
43127-43134 |
Protein |
denotes |
C/EBP-β |
|
T20911 |
43135-43167 |
Entity |
denotes |
deficient peritoneal macrophages |
|
T21052 |
43171-43174 |
Entity |
denotes |
LPS |
|
T21047 |
43179-43183 |
Protein |
denotes |
IFNγ |
|
T21037 |
43215-43244 |
Entity |
denotes |
to wild-type macrophages [68] |
|
T20971 |
43251-43254 |
Protein |
denotes |
PCR |
|
T21103 |
43325-43363 |
Gene_expression |
denotes |
LPS-inducible SerpinB2 mRNA expression |
|
T20970 |
43339-43347 |
Protein |
denotes |
SerpinB2 |
|
T20981 |
43339-43352 |
Protein |
denotes |
SerpinB2 mRNA |
|
T21068 |
43408-43442 |
Entity |
denotes |
transduced peritoneal macrophages, |
|
T21064 |
43472-43479 |
Protein |
denotes |
C/EBP-β |
|
T20990 |
43484-43492 |
Protein |
denotes |
SerpinB2 |
|
T20979 |
43484-43497 |
Protein |
denotes |
SerpinB2 gene |
|
T21115 |
43484-43511 |
Transcription |
denotes |
SerpinB2 gene transcription |
|
T20995 |
43513-43533 |
Protein |
denotes |
While C/EBP proteins |
|
T20972 |
43519-43524 |
Protein |
denotes |
C/EBP |
|
T20980 |
43552-43562 |
Entity |
denotes |
homodimers |
|
T20953 |
43566-43584 |
Entity |
denotes |
heterodimers [63], |
|
T21073 |
43599-43606 |
Protein |
denotes |
C/EBP-β |
|
T20965 |
43633-43638 |
Protein |
denotes |
C/EBP |
|
T20956 |
43659-43667 |
Protein |
denotes |
SerpinB2 |
|
T21049 |
43668-43673 |
Protein |
denotes |
C/EBP |
|
T20908 |
43726-43773 |
Protein |
denotes |
C/EBP-β in LPS-induced SerpinB2 gene expression |
|
T21059 |
43737-43748 |
Entity |
denotes |
LPS-induced |
|
T21090 |
43737-43773 |
Gene_expression |
denotes |
LPS-induced SerpinB2 gene expression |
|
T20950 |
43749-43757 |
Protein |
denotes |
SerpinB2 |
|
T21072 |
43775-43798 |
Protein |
denotes |
C/EBP-β, like SerpinB2, |
|
T21040 |
43789-43797 |
Protein |
denotes |
SerpinB2 |
|
T21041 |
43864-43867 |
Entity |
denotes |
LPS |
|
T21074 |
43882-43910 |
Protein |
denotes |
other inflammatory cytokines |
|
T20959 |
43936-43953 |
Protein |
denotes |
C/EBP-β-null mice |
|
T20963 |
44008-44098 |
Protein |
denotes |
SerpinB2 has been demonstrated to protect from bacterial and viral-induced cell death [14] |
|
T21086 |
44116-44169 |
Regulation |
denotes |
the regulation of SerpinB2 gene expression by C/EBP-β |
|
T21088 |
44131-44158 |
Gene_expression |
denotes |
of SerpinB2 gene expression |
|
T21055 |
44134-44142 |
Protein |
denotes |
SerpinB2 |
|
T21000 |
44134-44147 |
Protein |
denotes |
SerpinB2 gene |
|
T21013 |
44159-44169 |
Protein |
denotes |
by C/EBP-β |
|
T21005 |
44242-44252 |
Protein |
denotes |
of C/EBP-β |
|
T21001 |
44256-44293 |
Entity |
denotes |
several different amino acid residues |
|
T20942 |
44274-44284 |
Entity |
denotes |
amino acid |
|
T20977 |
44351-44361 |
Protein |
denotes |
genes [63] |
|
T21098 |
44365-44395 |
Phosphorylation |
denotes |
C/EBP-β phosphorylated on T217 |
|
T21038 |
44365-44395 |
Protein |
denotes |
C/EBP-β phosphorylated on T217 |
|
T20949 |
44391-44395 |
Entity |
denotes |
T217 |
|
T20934 |
44417-44435 |
Entity |
denotes |
rescue macrophages |
|
T20927 |
44481-44498 |
Protein |
denotes |
lethal toxin (LT) |
|
T21007 |
44550-44563 |
Protein |
denotes |
SerpinB2 [16] |
|
T21022 |
44585-44626 |
Entity |
denotes |
of a C/EBP-β phospho-acceptor site mutant |
|
T20973 |
44585-44626 |
Entity |
denotes |
of a C/EBP-β phospho-acceptor site mutant |
|
T21030 |
44606-44614 |
Entity |
denotes |
acceptor |
|
T20943 |
44628-44650 |
Protein |
denotes |
C/EBPβT217A, in Cebpb− |
|
T20919 |
44644-44650 |
Protein |
denotes |
Cebpb− |
|
T20964 |
44653-44657 |
Protein |
denotes |
MEFs |
|
T21010 |
44675-44683 |
Protein |
denotes |
SerpinB2 |
|
T20918 |
44693-44701 |
Entity |
denotes |
promoter |
|
T21014 |
44724-44742 |
Protein |
denotes |
wild-type C/EBP-β, |
|
T20920 |
44785-44806 |
Entity |
denotes |
the SerpinB2 promoter |
|
T21071 |
44789-44797 |
Protein |
denotes |
SerpinB2 |
|
T21028 |
44842-44845 |
Entity |
denotes |
LPS |
|
T21016 |
44902-44932 |
Entity |
denotes |
the T217 phospho-acceptor site |
|
T20955 |
44902-44932 |
Entity |
denotes |
the T217 phospho-acceptor site |
|
T20988 |
44906-44910 |
Entity |
denotes |
T217 |
|
T21116 |
44950-44996 |
Regulation |
denotes |
for the regulation of SerpinB2 gene expression |
|
T21118 |
44969-44996 |
Gene_expression |
denotes |
of SerpinB2 gene expression |
|
T20928 |
44972-44980 |
Protein |
denotes |
SerpinB2 |
|
T21023 |
44972-44985 |
Protein |
denotes |
SerpinB2 gene |
|
T21101 |
45009-45078 |
Gene_expression |
denotes |
expression of the C/EBP-β phospho-acceptor site mutant, C/EBP-βT188A, |
|
T21082 |
45009-45132 |
Regulation |
denotes |
expression of the C/EBP-β phospho-acceptor site mutant, C/EBP-βT188A, did not affect SerpinB2 promoter activity differently |
true |
T20996 |
45020-45063 |
Protein |
denotes |
of the C/EBP-β phospho-acceptor site mutant |
|
T21019 |
45065-45077 |
Protein |
denotes |
C/EBP-βT188A |
|
T20992 |
45094-45102 |
Protein |
denotes |
SerpinB2 |
|
T21046 |
45094-45111 |
Entity |
denotes |
SerpinB2 promoter |
|
T21106 |
45157-45257 |
Positive_regulation |
denotes |
In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity |
|
T21112 |
45170-45195 |
Gene_expression |
denotes |
expression of C/EBP-βS64A |
|
T20997 |
45181-45195 |
Protein |
denotes |
of C/EBP-βS64A |
|
T20909 |
45219-45230 |
Entity |
denotes |
LPS-induced |
|
T20931 |
45231-45239 |
Protein |
denotes |
SerpinB2 |
|
T21031 |
45231-45248 |
Entity |
denotes |
SerpinB2 promoter |
|
T21105 |
45259-45368 |
Regulation |
denotes |
indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity |
|
T21099 |
45275-45308 |
Phosphorylation |
denotes |
phosphorylation of C/EBP-β at S64 |
|
T20915 |
45291-45301 |
Protein |
denotes |
of C/EBP-β |
|
T20939 |
45305-45308 |
Entity |
denotes |
S64 |
|
T21051 |
45330-45341 |
Entity |
denotes |
LPS-induced |
|
T20974 |
45342-45350 |
Protein |
denotes |
SerpinB2 |
|
T20924 |
45342-45359 |
Entity |
denotes |
SerpinB2 promoter |
|
T21062 |
45376-45383 |
Protein |
denotes |
C/EBP-β |
|
T20904 |
45376-45387 |
Entity |
denotes |
C/EBP-β S64 |
|
T21102 |
45376-45458 |
Phosphorylation |
denotes |
C/EBP-β S64 is constitutively phosphorylated in both RAW264.7 cells and MEFs [73], |
|
T21035 |
45448-45452 |
Protein |
denotes |
MEFs |
|
T20947 |
45498-45507 |
Entity |
denotes |
this site |
|
T21069 |
45539-45550 |
Entity |
denotes |
LPS-induced |
|
T21120 |
45539-45576 |
Transcription |
denotes |
LPS-induced transcription of SerpinB2 |
|
T21012 |
45565-45576 |
Protein |
denotes |
of SerpinB2 |
|
T20938 |
45593-45601 |
Entity |
denotes |
promoter |
|
T20925 |
45644-45678 |
Protein |
denotes |
that Mixed lineage kinase-3 (MLK3) |
|
T20951 |
45673-45677 |
Protein |
denotes |
MLK3 |
|
T21033 |
45704-45718 |
Entity |
denotes |
of C/EBP-β S64 |
|
T21044 |
45707-45714 |
Protein |
denotes |
C/EBP-β |
|
T21011 |
45737-45751 |
Protein |
denotes |
IFNγ-regulated |
|
T21009 |
45799-45810 |
Protein |
denotes |
MLK3-driven |
|
T20969 |
45829-45835 |
Entity |
denotes |
of S64 |
|
T20930 |
45857-45882 |
Entity |
denotes |
in LPS-signaling pathways |
|
T20948 |
46010-46030 |
Entity |
denotes |
immune cells such as |
|
T20946 |
46010-46042 |
Entity |
denotes |
immune cells such as macrophages |
|
T20913 |
46110-46118 |
Protein |
denotes |
SerpinB2 |
|
T20921 |
46284-46295 |
Protein |
denotes |
of SerpinB2 |
|
T20976 |
46323-46387 |
Protein |
denotes |
cytokine profiles which can affect immune cell polarization [27] |
|
T21039 |
46421-46428 |
Protein |
denotes |
C/EBP-β |
|
T21079 |
46485-46498 |
Entity |
denotes |
immune cells, |
|
T20929 |
46582-46589 |
Protein |
denotes |
C/EBP-β |
|
T21087 |
46617-46695 |
Regulation |
denotes |
mediating both constitutive and LPS-induced transcription of the SerpinB2 gene |
|
T21111 |
46632-46695 |
Transcription |
denotes |
constitutive and LPS-induced transcription of the SerpinB2 gene |
|
T20916 |
46649-46660 |
Entity |
denotes |
LPS-induced |
|
T20954 |
46675-46695 |
Protein |
denotes |
of the SerpinB2 gene |
|
T21018 |
46682-46690 |
Protein |
denotes |
SerpinB2 |
|
T21042 |
46850-46864 |
Entity |
denotes |
the C/EBP site |
|
T21063 |
46854-46859 |
Protein |
denotes |
C/EBP |
|
T20914 |
46891-46899 |
Protein |
denotes |
SerpinB2 |
|
T20910 |
46891-46917 |
Entity |
denotes |
SerpinB2 proximal promoter |
|
T21053 |
46964-46975 |
Entity |
denotes |
LPS-induced |
|
T20966 |
46976-46984 |
Protein |
denotes |
SerpinB2 |
|
T21104 |
46976-47000 |
Gene_expression |
denotes |
SerpinB2 gene expression |
|
T20961 |
46976-47000 |
Protein |
denotes |
SerpinB2 gene expression |
|
T21107 |
47083-47131 |
Regulation |
denotes |
negatively regulating SerpinB2 promoter activity |
|
T20945 |
47105-47113 |
Protein |
denotes |
SerpinB2 |
|
T20960 |
47105-47122 |
Entity |
denotes |
SerpinB2 promoter |
|
T21108 |
47184-47250 |
Regulation |
denotes |
the regulation of inflammation-associated SerpinB2 gene expression |
|
T21100 |
47199-47250 |
Gene_expression |
denotes |
of inflammation-associated SerpinB2 gene expression |
|
T21075 |
47226-47234 |
Protein |
denotes |
SerpinB2 |
|
R10666 |
T14498 |
T14549 |
themeOf |
of endogenous SerpinB2 mRNA,constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
R10667 |
T14500 |
T14552 |
themeOf |
mRNA,mRNA Expression in MEFs and Inflammatory Primary Macrophages |
R10668 |
T14500 |
T14553 |
themeOf |
mRNA,mRNA Expression in MEFs and Inflammatory Primary Macrophages |
R10669 |
T14501 |
T14545 |
themeOf |
SerpinB2 mRNA,in SerpinB2 mRNA expression |
R10670 |
T14505 |
T14550 |
themeOf |
mRNA,"mRNA expression in response to LPS," |
R10671 |
T14505 |
T14551 |
themeOf |
mRNA,"mRNA expression in response to LPS," |
R10672 |
T14506 |
T14542 |
themeOf |
mRNA,mRNA expression |
R10673 |
T14506 |
T14543 |
themeOf |
mRNA,mRNA expression |
R10674 |
T14510 |
T14538 |
themeOf |
SerpinB2 mRNA,LPS-induced SerpinB2 mRNA expression |
R10675 |
T14513 |
T14539 |
causeOf |
LPS,LPS-stimulated SerpinB2 |
R10676 |
T14519 |
T14544 |
themeOf |
C/EBP-β,C/EBP-β expression |
R10677 |
T14527 |
T14541 |
causeOf |
LPS,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
R10678 |
T14529 |
T14539 |
themeOf |
SerpinB2,LPS-stimulated SerpinB2 |
R10679 |
T14531 |
T14548 |
themeOf |
SerpinB2 mRNA,endogenous SerpinB2 mRNA expression |
R10680 |
T14538 |
T14537 |
themeOf |
LPS-induced SerpinB2 mRNA expression,LPS-induced SerpinB2 mRNA expression was significantly decreased in C/EBP-β-deficient inflammatory macrophages |
R10681 |
T14540 |
T14541 |
themeOf |
an increase in SerpinB2 mRNA expression in wild-type MEFs,LPS stimulated an increase in SerpinB2 mRNA expression in wild-type MEFs |
R10682 |
T14542 |
T14547 |
themeOf |
mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
R10683 |
T14543 |
T14546 |
themeOf |
mRNA expression,whereas LPS-stimulated SerpinB2 mRNA expression was significantly dampened in Cebpb− |
R10684 |
T14545 |
T14540 |
themeOf |
in SerpinB2 mRNA expression,an increase in SerpinB2 mRNA expression in wild-type MEFs |
R10685 |
T14549 |
T14536 |
themeOf |
constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA,for mediating constitutive and LPS-inducible transcription of endogenous SerpinB2 mRNA |
R11260 |
T15270 |
T15327 |
themeOf |
C/EBP-β,of C/EBP-β recruitment |
R11261 |
T15271 |
T15328 |
themeOf |
T217-phosphorylated C/EBP-β,T217-phosphorylated C/EBP-β |
R11262 |
T15276 |
T15325 |
themeOf |
p-C/EBP-βT217,p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter |
R11263 |
T15277 |
T15322 |
themeOf |
p-C/EBP-βT217,p-C/EBP-βT217 recruitment |
R11264 |
T15283 |
T15326 |
themeOf |
C/EBP-β,C/EBP-β Binds the Murine SerpinB2 Proximal |
R11265 |
T15293 |
T15297 |
partOf |
the SerpinB2 promoter,SerpinB2 |
R11266 |
T15298 |
T15321 |
themeOf |
C/EBP-β,C/EBP-β phosphorylation |
R11267 |
T15299 |
T15320 |
themeOf |
target genes [38],transactivate target genes [38] |
R11268 |
T15301 |
T15307 |
partOf |
to the SerpinB2 proximal promoter,SerpinB2 |
R11269 |
T15301 |
T15325 |
themeOf |
to the SerpinB2 proximal promoter,p-C/EBP-βT217 was constitutively bound to the SerpinB2 proximal promoter |
R11270 |
T15302 |
T15316 |
partOf |
the SerpinB2 proximal promoter of the T217 phosphorylated C/EBP-β isoform (p-C/EBP-βT217),SerpinB2 |
R11271 |
T15303 |
T15323 |
themeOf |
of p-C/EBP-βT217,the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal |
R11272 |
T15305 |
T15311 |
partOf |
the murine SerpinB2 promoter,SerpinB2 |
R11273 |
T15310 |
T15317 |
partOf |
the SerpinB2 promoter,SerpinB2 |
R11274 |
T15313 |
T15323 |
themeOf |
for the SerpinB2 proximal,the binding affinity of p-C/EBP-βT217 for the SerpinB2 proximal |
R11275 |
T15315 |
T15271 |
partOf |
T217-phosphorylated,T217-phosphorylated C/EBP-β |
R11276 |
T15315 |
T15328 |
siteOf |
T217-phosphorylated,T217-phosphorylated C/EBP-β |
R11800 |
T16075 |
T16078 |
partOf |
to the SerpinB2 proximal promoter,SerpinB2 |
R11801 |
T16075 |
T16105 |
themeOf |
to the SerpinB2 proximal promoter,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
R11802 |
T16077 |
T16086 |
partOf |
SerpinB2 promoter,SerpinB2 |
R11803 |
T16087 |
T16104 |
causeOf |
LPS-stimulated,LPS-stimulated SerpinB2 promoter activity |
R11804 |
T16088 |
T16082 |
partOf |
the SerpinB2 promoter,SerpinB2 |
R11805 |
T16094 |
T16102 |
causeOf |
C/EBP-β,C/EBP-β Promotes LPS-inducible Murine SerpinB2 Proximal Promoter Activity |
R11806 |
T16097 |
T16105 |
themeOf |
C/EBP-β,Since C/EBP-β binds to the SerpinB2 proximal promoter in an LPS-inducible manner both in vitro and in vivo |
R12674 |
T17552 |
T17623 |
partOf |
S64,of C/EBP-β |
R12675 |
T17552 |
T17632 |
siteOf |
S64,phosphorylation of C/EBP-β at S64 |
R12676 |
T17553 |
T17637 |
themeOf |
MCP-1,for LPS-induced transcription of the cytokines IL-6 and MCP-1 [64] |
R12677 |
T17554 |
T17631 |
causeOf |
MEFs,MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS |
R12678 |
T17555 |
T17615 |
partOf |
SerpinB2 promoter,SerpinB2 |
R12679 |
T17563 |
T17635 |
themeOf |
C/EBP-β,C/EBP-β phosphorylation sites that may be important for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B) |
R12680 |
T17566 |
T17608 |
partOf |
SerpinB2 promoter,SerpinB2 |
R12681 |
T17568 |
T17621 |
partOf |
SerpinB2 promoter,SerpinB2 |
R12682 |
T17574 |
T17649 |
themeOf |
of wild-type C/EBP-β,Re-expression of wild-type C/EBP-β in Cebpb− |
R12683 |
T17580 |
T17646 |
themeOf |
SerpinB2,SerpinB2 gene expression |
R12684 |
T17581 |
T17641 |
themeOf |
SerpinB2,negatively regulate SerpinB2 |
R12685 |
T17584 |
T17647 |
causeOf |
LPS-stimulated,for LPS-stimulated SerpinB2 proximal promoter activity (Fig. 8B) |
R12686 |
T17590 |
T17577 |
partOf |
SerpinB2 Promoter,SerpinB2 |
R12687 |
T17593 |
T17644 |
themeOf |
SerpinB2 gene,LPS-induced SerpinB2 gene transcription |
R12688 |
T17595 |
T17636 |
themeOf |
the cytokines IL-6,for LPS-induced transcription of the cytokines IL-6 and MCP-1 [64] |
R12689 |
T17603 |
T17648 |
themeOf |
"of the C/EBP-β phospho-acceptor mutant,","Expression of the C/EBP-β phospho-acceptor mutant," |
R12690 |
T17605 |
T17629 |
causeOf |
LPS-stimulated,LPS-stimulated SerpinB2 Promoter Activity |
R12691 |
T17606 |
T17639 |
themeOf |
SerpinB2,SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
R12692 |
T17606 |
T17640 |
themeOf |
SerpinB2,SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
R12693 |
T17606 |
T17643 |
themeOf |
SerpinB2,SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
R12694 |
T17610 |
T17630 |
themeOf |
of C/EBP-βS64A,the expression of C/EBP-βS64A |
R12695 |
T17611 |
T17645 |
causeOf |
C/EBP-β-dependent,C/EBP-β-dependent SerpinB2 gene transcription |
R12696 |
T17612 |
T17640 |
causeOf |
by LPS,SerpinB2 is induced by LPS and regulated in a manner similar to cytokines [29] |
R12697 |
T17617 |
T17650 |
themeOf |
SerpinB2 gene,C/EBP-β-dependent SerpinB2 gene transcription |
R12698 |
T17620 |
T17638 |
themeOf |
"DAPK1,","regulating DAPK1," |
R12699 |
T17622 |
T17634 |
themeOf |
gene,SerpinB2 luciferase reporter gene expression |
R12700 |
T17623 |
T17632 |
themeOf |
of C/EBP-β,phosphorylation of C/EBP-β at S64 |
R12701 |
T17626 |
T17609 |
partOf |
SerpinB2 promoter,SerpinB2 |
R12702 |
T17627 |
T17597 |
partOf |
SerpinB2 proximal promoter,SerpinB2 |
R12703 |
T17634 |
T17631 |
themeOf |
SerpinB2 luciferase reporter gene expression,MEFs significantly stimulated SerpinB2 luciferase reporter gene expression in the presence of LPS |
R12704 |
T17650 |
T17642 |
themeOf |
C/EBP-β-dependent SerpinB2 gene transcription,in modulating C/EBP-β-dependent SerpinB2 gene transcription |
R12705 |
T17650 |
T17645 |
themeOf |
C/EBP-β-dependent SerpinB2 gene transcription,C/EBP-β-dependent SerpinB2 gene transcription |
R14932 |
T20903 |
T21085 |
themeOf |
"AP-1,","to physically interact with AP-1, and NF-κB to promote gene expression" |
R14933 |
T20904 |
T21062 |
partOf |
C/EBP-β S64,C/EBP-β |
R14934 |
T20904 |
T21102 |
siteOf |
C/EBP-β S64,"C/EBP-β S64 is constitutively phosphorylated in both RAW264.7 cells and MEFs [73]," |
R14935 |
T20915 |
T21099 |
themeOf |
of C/EBP-β,phosphorylation of C/EBP-β at S64 |
R14936 |
T20933 |
T21093 |
themeOf |
gene,both constitutive and LPS-induced SerpinB2 gene transcription |
R14937 |
T20935 |
T21092 |
themeOf |
proteins (CREB),"between C/EBP-β and CRE binding proteins (CREB) and AP-1 [63]," |
R14938 |
T20936 |
T21091 |
themeOf |
gene,gene transcription |
R14939 |
T20939 |
T20915 |
partOf |
S64,of C/EBP-β |
R14940 |
T20939 |
T21099 |
siteOf |
S64,phosphorylation of C/EBP-β at S64 |
R14941 |
T20949 |
T21038 |
partOf |
T217,C/EBP-β phosphorylated on T217 |
R14942 |
T20949 |
T21098 |
siteOf |
T217,C/EBP-β phosphorylated on T217 |
R14943 |
T20950 |
T21090 |
themeOf |
SerpinB2,LPS-induced SerpinB2 gene expression |
R14944 |
T20952 |
T21117 |
causeOf |
CREB,"Additionally, CREB has been shown to control transcription of the C/EBP-β gene [67]" |
R14945 |
T20954 |
T21111 |
themeOf |
of the SerpinB2 gene,constitutive and LPS-induced transcription of the SerpinB2 gene |
R14946 |
T20962 |
T21096 |
themeOf |
LPS-induced C/EBP-β,LPS-induced C/EBP-β |
R14947 |
T20962 |
T21097 |
themeOf |
LPS-induced C/EBP-β,LPS-induced C/EBP-β |
R14948 |
T20966 |
T21104 |
themeOf |
SerpinB2,SerpinB2 gene expression |
R14949 |
T20978 |
T21094 |
themeOf |
gene,gene expression |
R14950 |
T20979 |
T21115 |
themeOf |
SerpinB2 gene,SerpinB2 gene transcription |
R14951 |
T20981 |
T21103 |
themeOf |
SerpinB2 mRNA,LPS-inducible SerpinB2 mRNA expression |
R14952 |
T20989 |
T21119 |
themeOf |
of the human SERPINB2 gene [37],PMA-stimulated transcription of the human SERPINB2 gene [37] |
R14953 |
T20993 |
T21109 |
causeOf |
PMA-stimulated,PMA-stimulated transcription of the human SERPINB2 gene [37] |
R14954 |
T20996 |
T21101 |
themeOf |
of the C/EBP-β phospho-acceptor site mutant,"expression of the C/EBP-β phospho-acceptor site mutant, C/EBP-βT188A," |
R14955 |
T20997 |
T21112 |
themeOf |
of C/EBP-βS64A,expression of C/EBP-βS64A |
R14956 |
T21000 |
T21088 |
themeOf |
SerpinB2 gene,of SerpinB2 gene expression |
R14957 |
T21002 |
T21095 |
themeOf |
of the murine SerpinB2 gene,PMA-inducible transcription of the murine SerpinB2 gene |
R14958 |
T21003 |
T21113 |
themeOf |
of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2 |
R14959 |
T21003 |
T21114 |
themeOf |
of the pro-survival factor SerpinB2,massive induction of the pro-survival factor SerpinB2 |
R14960 |
T21012 |
T21120 |
themeOf |
of SerpinB2,LPS-induced transcription of SerpinB2 |
R14961 |
T21013 |
T21086 |
causeOf |
by C/EBP-β,the regulation of SerpinB2 gene expression by C/EBP-β |
R14962 |
T21023 |
T21118 |
themeOf |
SerpinB2 gene,of SerpinB2 gene expression |
R14963 |
T21027 |
T21097 |
causeOf |
LPS-induced,LPS-induced C/EBP-β |
R14964 |
T21029 |
T21083 |
themeOf |
gene,"LPS-inducible gene transcription," |
R14965 |
T21038 |
T21098 |
themeOf |
C/EBP-β phosphorylated on T217,C/EBP-β phosphorylated on T217 |
R14966 |
T21043 |
T21085 |
themeOf |
NF-κB,"to physically interact with AP-1, and NF-κB to promote gene expression" |
R14967 |
T21050 |
T21121 |
themeOf |
constitutive SerpinB2 gene,constitutive SerpinB2 gene transcription |
R14968 |
T21054 |
T21081 |
themeOf |
of the C/EBP-β gene,transcription of the C/EBP-β gene [67] |
R14969 |
T21062 |
T21102 |
themeOf |
C/EBP-β,"C/EBP-β S64 is constitutively phosphorylated in both RAW264.7 cells and MEFs [73]," |
R14970 |
T21066 |
T21092 |
themeOf |
"AP-1 [63],","between C/EBP-β and CRE binding proteins (CREB) and AP-1 [63]," |
R14971 |
T21075 |
T21100 |
themeOf |
SerpinB2,of inflammation-associated SerpinB2 gene expression |
R14972 |
T21081 |
T21117 |
themeOf |
transcription of the C/EBP-β gene [67],"Additionally, CREB has been shown to control transcription of the C/EBP-β gene [67]" |
R14973 |
T21088 |
T21086 |
themeOf |
of SerpinB2 gene expression,the regulation of SerpinB2 gene expression by C/EBP-β |
R14974 |
T21094 |
T21110 |
themeOf |
gene expression,promote gene expression |
R14975 |
T21095 |
T21084 |
themeOf |
PMA-inducible transcription of the murine SerpinB2 gene,mediating PMA-inducible transcription of the murine SerpinB2 gene |
R14976 |
T21099 |
T21105 |
causeOf |
phosphorylation of C/EBP-β at S64,indicating that phosphorylation of C/EBP-β at S64 negatively regulates LPS-induced SerpinB2 promoter activity |
R14977 |
T21100 |
T21108 |
themeOf |
of inflammation-associated SerpinB2 gene expression,the regulation of inflammation-associated SerpinB2 gene expression |
R14978 |
T21101 |
T21082 |
causeOf |
"expression of the C/EBP-β phospho-acceptor site mutant, C/EBP-βT188A,","expression of the C/EBP-β phospho-acceptor site mutant, C/EBP-βT188A, did not affect SerpinB2 promoter activity differently" |
R14979 |
T21111 |
T21087 |
themeOf |
constitutive and LPS-induced transcription of the SerpinB2 gene,mediating both constitutive and LPS-induced transcription of the SerpinB2 gene |
R14980 |
T21112 |
T21106 |
causeOf |
expression of C/EBP-βS64A,"In contrast, expression of C/EBP-βS64A significantly enhanced LPS-induced SerpinB2 promoter activity" |
R14981 |
T21118 |
T21116 |
themeOf |
of SerpinB2 gene expression,for the regulation of SerpinB2 gene expression |
R14982 |
T21119 |
T21109 |
themeOf |
PMA-stimulated transcription of the human SERPINB2 gene [37],PMA-stimulated transcription of the human SERPINB2 gene [37] |
R1599 |
T2461 |
T2481 |
causeOf |
LPS-dependent,for LPS-dependent transcription |
R1600 |
T2470 |
T2475 |
themeOf |
LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting |
R1601 |
T2371 |
T2480 |
themeOf |
upon a C/EBP binding site,upon a C/EBP binding site |
R1602 |
T2373 |
T2472 |
themeOf |
SerpinB2,constitutive SerpinB2 expression |
R1603 |
T2471 |
T2476 |
themeOf |
LPS induction of SerpinB2,LPS induction of SerpinB2 is dependent upon cis-acting |
R1604 |
T2382 |
T2468 |
themeOf |
C/EBP-β,C/EBP-β directly bound to this site in vivo |
R1606 |
T2385 |
T2473 |
themeOf |
of LPS,The binding of LPS to TLR4 on the surface of macrophages |
R1607 |
T2390 |
T2471 |
causeOf |
LPS,LPS induction of SerpinB2 |
R1608 |
T2393 |
T2487 |
themeOf |
of the SerpinB2 gene,the transcriptional regulation of the SerpinB2 gene |
R1609 |
T2395 |
T2479 |
locationOf |
intracellular,a nonglycosylated intracellular protein [10] |
R1610 |
T2397 |
T2485 |
causeOf |
by LPS,SerpinB2 induction by LPS |
R1611 |
T2403 |
T2474 |
themeOf |
of adaptor molecules,the recruitment of adaptor molecules |
R1613 |
T2406 |
T2483 |
themeOf |
IFN-γ,IFN-γ co-stimulation [4] |
R1615 |
T2408 |
T2484 |
themeOf |
cytokine,"the initiation of innate immune responses, including cytokine release" |
R1618 |
T2414 |
T2465 |
themeOf |
a nonglycosylated intracellular protein [10],a nonglycosylated intracellular protein [10] |
R1619 |
T2414 |
T2479 |
themeOf |
a nonglycosylated intracellular protein [10],a nonglycosylated intracellular protein [10] |
R1620 |
T2415 |
T2485 |
themeOf |
SerpinB2,SerpinB2 induction by LPS |
R1621 |
T2415 |
T2486 |
themeOf |
SerpinB2,SerpinB2 induction by LPS |
R1625 |
T2423 |
T2482 |
causeOf |
a C/EBP-β phospho-acceptor site,"Importantly, a C/EBP-β phospho-acceptor site was found to negatively regulate LPS-induced SerpinB2 promoter activity" |
R16264 |
T22555 |
T22571 |
themeOf |
SerpinB2 protein,analysis of SerpinB2 protein expression in whole cell lysates |
R16265 |
T22558 |
T22572 |
themeOf |
protein,protein expression |
R1627 |
T2425 |
T2381 |
partOf |
SerpinB2 promoter,SerpinB2 |
R1630 |
T2431 |
T2443 |
partOf |
the SerpinB2 promoter,SerpinB2 |
R1632 |
T2434 |
T2376 |
partOf |
"the murine SerpinB2 promoter,",SerpinB2 |
R1634 |
T2435 |
T2477 |
causeOf |
mitogen,mitogen-activated protein kinase (MAPK) |
R1636 |
T2439 |
T2429 |
partOf |
the SerpinB2 promoter responsible for LPS-dependent transcription,SerpinB2 |
R1637 |
T2440 |
T2467 |
themeOf |
The SerpinB2 gene,The SerpinB2 gene is highly regulated in a cell type specific manner analogous to that of cytokines and oncogenes [29] |
R1640 |
T2444 |
T2470 |
themeOf |
of SerpinB2,LPS induction of SerpinB2 |
R1641 |
T2444 |
T2471 |
themeOf |
of SerpinB2,LPS induction of SerpinB2 |
R1644 |
T2451 |
T2466 |
themeOf |
of protein kinases,the activation of protein kinases |
R1646 |
T2452 |
T2469 |
themeOf |
of plasminogen,the activation of plasminogen |
R1649 |
T2459 |
T2477 |
themeOf |
protein kinase (MAPK),mitogen-activated protein kinase (MAPK) |
R1651 |
T2460 |
T2473 |
themeOf |
to TLR4,The binding of LPS to TLR4 on the surface of macrophages |
R16590 |
T23061 |
T23070 |
partOf |
murine SerpinB2 promoter-luciferase,murine SerpinB2 promoter-luciferase |
R16591 |
T23071 |
T23081 |
partOf |
the murine SerpinB2 promoter,SerpinB2 |
R16981 |
T23608 |
T23624 |
partOf |
of the murine SerpinB2 promoter,SerpinB2 |
R16982 |
T23620 |
T23613 |
partOf |
murine SerpinB2 promoters,SerpinB2 |
R17238 |
T23991 |
T23989 |
partOf |
of the murine SerpinB2 promoter,SerpinB2 |
R17239 |
T23997 |
T23984 |
partOf |
of the murine SerpinB2 promoter,SerpinB2 |
R17428 |
T24313 |
T24331 |
partOf |
the murine SerpinB2 proximal promoter C/EBP,SerpinB2 |
R17898 |
T25003 |
T25031 |
themeOf |
SerpinB2 mRNA,SerpinB2 mRNA expression |
R17899 |
T25011 |
T25033 |
themeOf |
mRNA,mRNA expression in untreated Cebpb+/+ |
R17900 |
T25011 |
T25034 |
themeOf |
mRNA,mRNA expression in untreated Cebpb+/+ |
R17901 |
T25016 |
T25036 |
themeOf |
SerpinB2 mRNA,qPCR analysis of murine SerpinB2 mRNA expression in the lentiviral transduced peritoneal macrophages |
R17902 |
T25021 |
T25032 |
themeOf |
SerpinB2 mRNA,for constitutive and LPS-induced SerpinB2 mRNA expression |
R17903 |
T25031 |
T25035 |
themeOf |
SerpinB2 mRNA expression,SerpinB2 mRNA expression is abrogated in Cebpb−/− |
R18338 |
T25720 |
T25733 |
partOf |
the murine SerpinB2 promoter in vivo,SerpinB2 |
R18339 |
T25728 |
T25740 |
themeOf |
rIgG,the rIgG control |
R18340 |
T25730 |
T25741 |
themeOf |
the SerpinB2 promoter suggests,the SerpinB2 promoter suggests active transcription following LPS stimulation |
R18877 |
T26696 |
T26746 |
themeOf |
LPS-stimulated Cebpb+/+ MEFs,LPS-stimulated Cebpb+/+ MEFs |
R18878 |
T26700 |
T26745 |
themeOf |
gene,C/EBP-β gene schematic depicting gene structure |
R18879 |
T26706 |
T26743 |
causeOf |
LPS-stimulated,LPS-stimulated SerpinB2 promoter activity |
R18880 |
T26718 |
T26713 |
partOf |
SerpinB2 promoter,SerpinB2 |
R18881 |
T26721 |
T26746 |
causeOf |
LPS-stimulated,LPS-stimulated Cebpb+/+ MEFs |
R18882 |
T26727 |
T26699 |
partOf |
The SerpinB2 proximal promoter,SerpinB2 |
R18883 |
T26728 |
T26737 |
partOf |
SerpinB2 proximal promoter,SerpinB2 |
R18884 |
T26730 |
T26744 |
themeOf |
the pGLmP-539 SerpinB2 promoter-luciferase reporter,MEFs expressing the pGLmP-539 SerpinB2 promoter-luciferase reporter in the presence or absence of LPS |
R2698 |
T3710 |
T3719 |
themeOf |
TaqMan® Gene,TaqMan® Gene Expression 20X primers |
R2951 |
T4039 |
T4044 |
partOf |
of the murine SerpinB2 promoter,SerpinB2 |
R3290 |
T4484 |
T4500 |
themeOf |
a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli,a purified recombinant GST-murine SerpinB2 fusion protein produced in E. coli |
R348 |
T748 |
T759 |
themeOf |
SerpinB2,SerpinB2 expression |
R349 |
T749 |
T758 |
themeOf |
of Murine SerpinB2,LPS-Inducible Transcription of Murine SerpinB2 |
R350 |
T755 |
T762 |
themeOf |
C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression,C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression |
R351 |
T756 |
T755 |
themeOf |
of inflammation-associated SerpinB2 expression,C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression |
R3841 |
T5407 |
T5443 |
partOf |
the SerpinB2 promoter (−3261 to +92),SerpinB2 |
R3842 |
T5447 |
T5448 |
partOf |
of the wild-type murine SerpinB2 promoter,SerpinB2 |
R3843 |
T5469 |
T5461 |
partOf |
the SerpinB2 promoter LPS-responsive,SerpinB2 |
R4504 |
T6355 |
T6367 |
causeOf |
LPS,where co-transfected C/EBP-β or LPS affected pRL-TK activity |
R4505 |
T6362 |
T6366 |
causeOf |
co-transfected C/EBP-β,where co-transfected C/EBP-β or LPS affected pRL-TK activity |
R5402 |
T7575 |
T7596 |
themeOf |
of the C/EBP-β phospho-acceptor mutant proteins,Expression of the C/EBP-β phospho-acceptor mutant proteins |
R5780 |
T8041 |
T8058 |
themeOf |
Antibodies,Antibodies were purchased from Santa Cruz |
R6236 |
T8596 |
T8618 |
themeOf |
the bound chromatin,the bound chromatin |
R6237 |
T8601 |
T8590 |
partOf |
the SerpinB2 proximal promoter,SerpinB2 |
R6781 |
T9261 |
T9281 |
themeOf |
SerpinB2 mRNA,of LPS-inducible SerpinB2 mRNA expression |
R6782 |
T9269 |
T9279 |
themeOf |
gene,in gene transcription |
R6783 |
T9275 |
T9280 |
themeOf |
SerpinB2,LPS-induced SerpinB2 expression |
R6784 |
T9279 |
T9282 |
themeOf |
in gene transcription,an increase in gene transcription |
R716 |
T706 |
T762 |
causeOf |
C/EBP-β-dependent,C/EBP-β-dependent regulation of inflammation-associated SerpinB2 expression |
R719 |
T718 |
T757 |
themeOf |
of C/EBP-β containing complexes with the SerpinB2 promoter,the formation of C/EBP-β containing complexes with the SerpinB2 promoter |
R721 |
T719 |
T760 |
themeOf |
24 hrs in murine macrophages,24 hrs in murine macrophages |
R723 |
T724 |
T760 |
locationOf |
murine macrophages,24 hrs in murine macrophages |
R724 |
T727 |
T756 |
themeOf |
SerpinB2,of inflammation-associated SerpinB2 expression |
R728 |
T738 |
T761 |
themeOf |
the human SERPINB2 promoter conserved in the mouse,the human SERPINB2 promoter conserved in the mouse |
R7300 |
T9976 |
T10001 |
partOf |
the murine SerpinB2 promoter,SerpinB2 |
R7301 |
T9982 |
T9981 |
partOf |
of the murine SerpinB2 promoter,SerpinB2 |
R7302 |
T9989 |
T10014 |
partOf |
of the SerpinB2 promoter,SerpinB2 |
R7303 |
T9999 |
T9995 |
partOf |
The SerpinB2 Proximal Promoter,The SerpinB2 Proximal Promoter |
R7304 |
T10006 |
T9985 |
partOf |
the murine SerpinB2 promoter,SerpinB2 |
R7305 |
T10007 |
T10018 |
themeOf |
SerpinB2 gene,PMA-induced SerpinB2 gene regulation has been extensively studied in human macrophage cell lines [45] |
R8021 |
T10957 |
T10975 |
themeOf |
potential binding sites for PU.1 (−412/−407) and Oct-1,potential binding sites for PU.1 (−412/−407) and Oct-1 |
R8022 |
T10962 |
T10977 |
themeOf |
SerpinB2,of SerpinB2 gene expression [52] |
R8023 |
T10977 |
T10976 |
themeOf |
of SerpinB2 gene expression [52],the regulation of SerpinB2 gene expression [52] |
R8839 |
T11984 |
T12040 |
causeOf |
sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57],sites for transcription factors previously reported to mediate LPS-inducible transcription in other genes [57] |
R8840 |
T12007 |
T12043 |
causeOf |
CRE,"C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription" |
R8841 |
T12008 |
T12041 |
causeOf |
C/EBP,"C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription" |
R8842 |
T12013 |
T12039 |
themeOf |
of the SerpinB2 gene,LPS-induced activation of the SerpinB2 gene |
R8843 |
T12024 |
T12044 |
themeOf |
C/EBP,have also recently implicated this C/EBP site in LPS-induced activation of the SerpinB2 gene |
R8844 |
T12031 |
T12042 |
causeOf |
Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter,"C/EBP, CRE and Two AP-1 Sites in the Murine SerpinB2 Gene Proximal Promoter are Essential for Optimal LPS-inducible Transcription" |
R9458 |
T12760 |
T12797 |
themeOf |
a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors,Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors |
R9459 |
T12764 |
T12778 |
partOf |
the rat albumin promoter,albumin |
R9460 |
T12770 |
T12799 |
themeOf |
a high affinity C/EBP binding site,a high affinity C/EBP binding site |
R9461 |
T12779 |
T12797 |
themeOf |
the putative SerpinB2 C/EBP site,Together these data indicate that the putative SerpinB2 C/EBP site at −203/−192 binds a LPS-inducible complex that is likely to contain a member of the C/EBP family of transcription factors |
R9462 |
T12780 |
T12798 |
themeOf |
of a known C/EBP binding site from the rat albumin promoter,of a known C/EBP binding site from the rat albumin promoter |
R9463 |
T12787 |
T12781 |
partOf |
the rat albumin promoter,albumin |