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PMC:1310901 / 5973-6808 JSONTXT 14 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T3192 0-10 VBG denotes Sequencing
T3193 11-13 IN denotes of
T3194 14-17 DT denotes the
T3195 18-23 NN denotes IRF-4
T3196 24-32 NN denotes promoter
T3197 33-36 IN denotes For
T3198 37-45 NN denotes analysis
T3199 46-48 IN denotes of
T3200 49-52 DT denotes the
T3201 53-58 NN denotes IRF-4
T3202 59-67 NN denotes promoter
T3203 68-74 NN denotes region
T3204 75-78 IN denotes for
T3205 79-88 JJ denotes permanent
T3206 89-100 NNS denotes aberrations
T3207 101-105 JJ denotes such
T3208 106-108 IN denotes as
T3209 109-129 NNS denotes insertions/deletions
T3210 130-132 CC denotes or
T3211 133-141 NN denotes mutation
T3212 141-142 , denotes ,
T3213 143-145 PRP denotes we
T3214 146-159 VBD denotes PCR-amplified
T3215 160-163 CD denotes two
T3216 164-173 NNS denotes fragments
T3217 174-178 IN denotes from
T3218 179-186 JJ denotes genomic
T3219 187-190 NN denotes DNA
T3220 190-191 , denotes ,
T3221 192-197 WDT denotes which
T3222 198-201 VBD denotes was
T3223 202-211 VBN denotes extracted
T3224 212-216 IN denotes from
T3225 217-225 VBN denotes depicted
T3226 226-230 NN denotes cell
T3227 231-236 NNS denotes lines
T3228 237-241 IN denotes with
T3229 242-243 DT denotes a
T3230 244-254 JJ denotes commercial
T3231 255-258 NN denotes kit
T3232 259-260 -LRB- denotes (
T3233 260-266 NNP denotes Qiagen
T3234 266-267 , denotes ,
T3235 268-273 NNP denotes Hilde
T3236 273-274 , denotes ,
T3237 275-282 NNP denotes Germany
T3238 282-283 -RRB- denotes )
T3239 284-286 IN denotes as
T3240 287-298 VBN denotes recommended
T3241 298-299 . denotes .
T3242 300-303 DT denotes The
T3243 304-311 NNS denotes primers
T3244 312-316 VBD denotes were
T3245 317-326 JJ denotes 1-forward
T3246 326-327 : denotes :
T3247 328-329 CD denotes 5
T3248 329-330 SYM denotes ′
T3249 330-331 : denotes -
T3250 331-355 NN denotes TTGAGATGGAGTCTTGCTCTGT-3
T3251 355-356 NN denotes ′
T3252 356-357 , denotes ,
T3253 358-367 JJ denotes 1-reverse
T3254 367-368 : denotes :
T3255 369-370 CD denotes 5
T3256 370-371 SYM denotes ′
T3257 371-372 : denotes -
T3258 372-397 NN denotes CCAGGACCTCAGGAGGCCAGTCA-3
T3259 397-398 NN denotes ′
T3260 398-399 : denotes ;
T3261 400-409 JJ denotes 2-forward
T3262 409-410 : denotes :
T3263 411-412 CD denotes 5
T3264 412-413 SYM denotes ′
T3265 413-414 : denotes -
T3266 414-441 NN denotes AGCGGTGAAACTGAGAGTGCGAGGT-3
T3267 441-442 NN denotes ′
T3268 442-443 , denotes ,
T3269 444-453 JJ denotes 2-reverse
T3270 453-454 : denotes :
T3271 455-456 CD denotes 5
T3272 456-457 SYM denotes ′
T3273 457-458 : denotes -
T3274 458-480 NN denotes GCCACATCGCTGCAGTTTAG-3
T3275 480-481 NN denotes ′
T3276 481-482 . denotes .
T3277 483-486 DT denotes The
T3278 487-495 NNS denotes products
T3279 496-500 VBD denotes were
T3280 501-507 VBN denotes cloned
T3281 508-512 IN denotes with
T3282 513-516 DT denotes the
T3283 518-522 NNP denotes TOPO
T3284 523-525 NNP denotes TA
T3285 526-533 VBG denotes cloning
T3286 534-537 NN denotes kit
T3287 539-540 -LRB- denotes (
T3288 540-550 NNP denotes Invitrogen
T3289 550-551 , denotes ,
T3290 552-561 NNP denotes Groningen
T3291 561-562 , denotes ,
T3292 563-566 DT denotes The
T3293 567-578 NNP denotes Netherlands
T3294 578-579 -RRB- denotes )
T3295 579-580 . denotes .
T3296 581-586 IN denotes After
T3297 587-596 JJ denotes bacterial
T3298 597-610 NN denotes amplification
T3299 611-613 IN denotes of
T3300 614-617 DT denotes the
T3301 618-624 VBN denotes cloned
T3302 625-628 NNP denotes PCR
T3303 629-638 NNS denotes fragments
T3304 639-641 IN denotes by
T3305 642-650 JJ denotes standard
T3306 651-661 NNS denotes procedures
T3307 661-662 , denotes ,
T3308 663-665 IN denotes at
T3309 666-671 JJS denotes least
T3310 672-677 CD denotes three
T3311 678-684 NNS denotes clones
T3312 685-689 IN denotes from
T3313 690-694 DT denotes each
T3314 695-701 NN denotes sample
T3315 702-706 VBD denotes were
T3316 707-716 VBN denotes sequenced
T3317 717-721 IN denotes with
T3318 722-724 DT denotes an
T3319 725-734 VBN denotes automated
T3320 735-744 NN denotes sequencer
T3321 745-746 -LRB- denotes (
T3322 746-749 NNP denotes ABI
T3323 750-755 NNP denotes Prism
T3324 756-759 CD denotes 377
T3325 759-760 , denotes ,
T3326 761-768 NNP denotes Applied
T3327 769-780 NNPS denotes Bio-systems
T3328 780-781 , denotes ,
T3329 782-788 NNP denotes Foster
T3330 789-793 NNP denotes City
T3331 793-794 , denotes ,
T3332 795-798 NNP denotes USA
T3333 798-799 -RRB- denotes )
T3334 800-802 IN denotes as
T3335 803-814 VBN denotes recommended
T3336 815-817 IN denotes by
T3337 818-821 DT denotes the
T3338 822-834 NN denotes manufacturer
T3339 834-835 . denotes .
R2561 T3192 T3192 ROOT Sequencing,Sequencing
R2562 T3193 T3192 prep of,Sequencing
R2563 T3194 T3196 det the,promoter
R2564 T3195 T3196 compound IRF-4,promoter
R2565 T3196 T3193 pobj promoter,of
R2566 T3197 T3214 prep For,PCR-amplified
R2567 T3198 T3197 pobj analysis,For
R2568 T3199 T3198 prep of,analysis
R2569 T3200 T3203 det the,region
R2570 T3201 T3203 amod IRF-4,region
R2571 T3202 T3203 compound promoter,region
R2572 T3203 T3199 pobj region,of
R2573 T3204 T3198 prep for,analysis
R2574 T3205 T3206 amod permanent,aberrations
R2575 T3206 T3204 pobj aberrations,for
R2576 T3207 T3208 amod such,as
R2577 T3208 T3206 prep as,aberrations
R2578 T3209 T3208 pobj insertions/deletions,as
R2579 T3210 T3209 cc or,insertions/deletions
R2580 T3211 T3209 conj mutation,insertions/deletions
R2581 T3212 T3214 punct ",",PCR-amplified
R2582 T3213 T3214 nsubj we,PCR-amplified
R2583 T3214 T3214 ROOT PCR-amplified,PCR-amplified
R2584 T3215 T3216 nummod two,fragments
R2585 T3216 T3214 dobj fragments,PCR-amplified
R2586 T3217 T3216 prep from,fragments
R2587 T3218 T3219 amod genomic,DNA
R2588 T3219 T3217 pobj DNA,from
R2589 T3220 T3219 punct ",",DNA
R2590 T3221 T3223 nsubjpass which,extracted
R2591 T3222 T3223 auxpass was,extracted
R2592 T3223 T3216 relcl extracted,fragments
R2593 T3224 T3223 prep from,extracted
R2594 T3225 T3227 amod depicted,lines
R2595 T3226 T3227 compound cell,lines
R2596 T3227 T3224 pobj lines,from
R2597 T3228 T3223 prep with,extracted
R2598 T3229 T3231 det a,kit
R2599 T3230 T3231 amod commercial,kit
R2600 T3231 T3228 pobj kit,with
R2601 T3232 T3231 punct (,kit
R2602 T3233 T3231 appos Qiagen,kit
R2603 T3234 T3233 punct ",",Qiagen
R2604 T3235 T3233 conj Hilde,Qiagen
R2605 T3236 T3235 punct ",",Hilde
R2606 T3237 T3235 appos Germany,Hilde
R2607 T3238 T3235 punct ),Hilde
R2608 T3239 T3240 mark as,recommended
R2609 T3240 T3223 advcl recommended,extracted
R2610 T3241 T3214 punct .,PCR-amplified
R2611 T3242 T3243 det The,primers
R2612 T3243 T3244 nsubj primers,were
R2613 T3244 T3244 ROOT were,were
R2614 T3245 T3244 acomp 1-forward,were
R2615 T3246 T3247 punct :,5
R2616 T3247 T3251 nummod 5,′
R2617 T3248 T3250 punct ′,TTGAGATGGAGTCTTGCTCTGT-3
R2618 T3249 T3250 punct -,TTGAGATGGAGTCTTGCTCTGT-3
R2619 T3250 T3251 compound TTGAGATGGAGTCTTGCTCTGT-3,′
R2620 T3251 T3275 dep ′,′
R2621 T3252 T3251 punct ",",′
R2622 T3253 T3275 dep 1-reverse,′
R2623 T3254 T3255 punct :,5
R2624 T3255 T3253 nummod 5,1-reverse
R2625 T3256 T3255 punct ′,5
R2626 T3257 T3258 punct -,CCAGGACCTCAGGAGGCCAGTCA-3
R2627 T3258 T3259 compound CCAGGACCTCAGGAGGCCAGTCA-3,′
R2628 T3259 T3255 dep ′,5
R2629 T3260 T3275 punct ;,′
R2630 T3261 T3275 amod 2-forward,′
R2631 T3262 T3267 punct :,′
R2632 T3263 T3267 nummod 5,′
R2633 T3264 T3266 punct ′,AGCGGTGAAACTGAGAGTGCGAGGT-3
R2634 T3265 T3266 punct -,AGCGGTGAAACTGAGAGTGCGAGGT-3
R2635 T3266 T3267 compound AGCGGTGAAACTGAGAGTGCGAGGT-3,′
R2636 T3267 T3275 nmod ′,′
R2637 T3268 T3267 punct ",",′
R2638 T3269 T3275 nmod 2-reverse,′
R2639 T3270 T3271 punct :,5
R2640 T3271 T3269 nummod 5,2-reverse
R2641 T3272 T3274 punct ′,GCCACATCGCTGCAGTTTAG-3
R2642 T3273 T3274 punct -,GCCACATCGCTGCAGTTTAG-3
R2643 T3274 T3275 compound GCCACATCGCTGCAGTTTAG-3,′
R2644 T3275 T3244 acomp ′,were
R2645 T3276 T3244 punct .,were
R2646 T3277 T3278 det The,products
R2647 T3278 T3280 nsubjpass products,cloned
R2648 T3279 T3280 auxpass were,cloned
R2649 T3280 T3280 ROOT cloned,cloned
R2650 T3281 T3280 prep with,cloned
R2651 T3282 T3286 det the,kit
R2652 T3283 T3284 compound TOPO,TA
R2653 T3284 T3285 nsubj TA,cloning
R2654 T3285 T3286 amod cloning,kit
R2655 T3286 T3281 pobj kit,with
R2656 T3287 T3286 punct (,kit
R2657 T3288 T3286 appos Invitrogen,kit
R2658 T3289 T3288 punct ",",Invitrogen
R2659 T3290 T3288 conj Groningen,Invitrogen
R2660 T3291 T3290 punct ",",Groningen
R2661 T3292 T3293 det The,Netherlands
R2662 T3293 T3290 appos Netherlands,Groningen
R2663 T3294 T3290 punct ),Groningen
R2664 T3295 T3280 punct .,cloned
R2665 T3296 T3316 prep After,sequenced
R2666 T3297 T3298 amod bacterial,amplification
R2667 T3298 T3296 pobj amplification,After
R2668 T3299 T3298 prep of,amplification
R2669 T3300 T3303 det the,fragments
R2670 T3301 T3303 amod cloned,fragments
R2671 T3302 T3303 compound PCR,fragments
R2672 T3303 T3299 pobj fragments,of
R2673 T3304 T3298 prep by,amplification
R2674 T3305 T3306 amod standard,procedures
R2675 T3306 T3304 pobj procedures,by
R2676 T3307 T3316 punct ",",sequenced
R2677 T3308 T3309 advmod at,least
R2678 T3309 T3310 advmod least,three
R2679 T3310 T3311 nummod three,clones
R2680 T3311 T3316 nsubjpass clones,sequenced
R2681 T3312 T3311 prep from,clones
R2682 T3313 T3314 det each,sample
R2683 T3314 T3312 pobj sample,from
R2684 T3315 T3316 auxpass were,sequenced
R2685 T3316 T3316 ROOT sequenced,sequenced
R2686 T3317 T3316 prep with,sequenced
R2687 T3318 T3320 det an,sequencer
R2688 T3319 T3320 amod automated,sequencer
R2689 T3320 T3317 pobj sequencer,with
R2690 T3321 T3320 punct (,sequencer
R2691 T3322 T3323 compound ABI,Prism
R2692 T3323 T3320 appos Prism,sequencer
R2693 T3324 T3323 nummod 377,Prism
R2694 T3325 T3323 punct ",",Prism
R2695 T3326 T3327 compound Applied,Bio-systems
R2696 T3327 T3323 appos Bio-systems,Prism
R2697 T3328 T3323 punct ",",Prism
R2698 T3329 T3330 compound Foster,City
R2699 T3330 T3323 appos City,Prism
R2700 T3331 T3330 punct ",",City
R2701 T3332 T3330 npadvmod USA,City
R2702 T3333 T3320 punct ),sequencer
R2703 T3334 T3335 mark as,recommended
R2704 T3335 T3316 advcl recommended,sequenced
R2705 T3336 T3335 agent by,recommended
R2706 T3337 T3338 det the,manufacturer
R2707 T3338 T3336 pobj manufacturer,by
R2708 T3339 T3316 punct .,sequenced