bionlp-ost-19-SeeDev-bin-train  

SeeDev-binary@ldeleger:SeeDev-binary-14701918-4 JSONTXT

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Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1 37-41 Gene denotes MUM4
E15 37-41 Is_Involved_In_Process denotes MUM4
T2 72-88 Pathway denotes RGI biosynthesis
T3 109-113 Genotype denotes mum4
T4 114-122 Pathway denotes mucilage
T6 288-297 Genotype denotes wild-type
T5 288-303 Tissue denotes wild-type seeds
T7 324-328 Gene denotes MUM4
E1 324-328 Regulates_Process denotes MUM4
T8 479-509 Pathway denotes production of activated sugars
T9 515-541 Protein_Domain denotes N-terminal portion of MUM4
T10 537-541 Protein denotes MUM4
T11 561-570 Genotype denotes bacterial
E42 561-570 Regulates_Process denotes bacterial
T12 571-598 Protein_Family denotes dTDP-d-Glc 4,6-dehydratases
E13 571-598 Regulates_Process denotes dTDP-d-Glc 4,6-dehydratases
E36 571-598 Exists_In_Genotype denotes dTDP-d-Glc 4,6-dehydratases
T13 644-682 Pathway denotes conversion of dTDP-d-Glc to dTDP-l-Rha
T14 735-739 Protein denotes MUM4
E8 735-739 Regulates_Process denotes MUM4
T15 747-769 Pathway denotes synthesis of NDP-l-Rha
T16 789-806 Pathway denotes production of RGI
T17 937-941 Protein denotes MUM4
T18 959-963 Gene denotes RHM2
E16 959-963 Is_Functionally_Equivalent_To denotes RHM2
E19 959-963 Transcribes_Or_Translates_To denotes RHM2
T19 965-988 Gene denotes RHAMNOSE BIOSYNTHESIS 2
T20 1041-1057 Pathway denotes RGI biosynthesis
T21 1124-1160 Pathway denotes conversion of NDP-d-Glc to NDP-l-Rha
T22 1162-1184 Genotype denotes Gram-negative bacteria
E37 1162-1184 Regulates_Process denotes Gram-negative bacteria
T23 1193-1209 Genotype denotes Escherichia coli
E41 1193-1209 Regulates_Process denotes Escherichia coli
T24 1241-1256 Protein denotes 4,6-dehydratase
E12 1241-1256 Regulates_Process denotes 4,6-dehydratase
E25 1241-1256 Exists_In_Genotype denotes 4,6-dehydratase
E35 1241-1256 Exists_In_Genotype denotes 4,6-dehydratase
T25 1258-1271 Protein denotes 3,5-epimerase
E5 1258-1271 Regulates_Process denotes 3,5-epimerase
E27 1258-1271 Exists_In_Genotype denotes 3,5-epimerase
E29 1258-1271 Exists_In_Genotype denotes 3,5-epimerase
T26 1277-1288 Protein denotes 4-reductase
E4 1277-1288 Regulates_Process denotes 4-reductase
E23 1277-1288 Exists_In_Genotype denotes 4-reductase
E28 1277-1288 Exists_In_Genotype denotes 4-reductase
T27 1293-1325 Pathway denotes convert dTDP-d-Glc to dTDP-l-Rha
T28 1363-1367 Protein denotes MUM4
T29 1397-1414 Protein_Domain denotes N-terminal domain
T30 1448-1475 Protein_Family denotes dTDP-d-Glc 4,6-dehydratases
T31 1487-1504 Protein_Domain denotes C-terminal domain
T32 1529-1541 Protein_Family denotes 4-reductases
T33 1605-1616 Genotype denotes Arabidopsis
E38 1605-1616 Regulates_Process denotes Arabidopsis
T35 1636-1649 Protein_Family denotes 3,5 epimerase
T34 1636-1662 Protein_Family denotes 3,5 epimerase, 4-reductase
E6 1636-1662 Regulates_Process denotes 3,5 epimerase, 4-reductase
E30 1636-1662 Exists_In_Genotype denotes 3,5 epimerase, 4-reductase
T36 1651-1662 Protein_Family denotes 4-reductase
T37 1670-1707 Regulatory_Network denotes synthesis of GDP-l-Fuc from GDP-d-Man
T38 1709-1713 Protein denotes GER1
E2 1709-1713 Regulates_Process denotes GER1
E20 1709-1713 Is_Member_Of_Family denotes GER1
E24 1709-1713 Exists_In_Genotype denotes GER1
T39 1715-1719 Protein denotes GER2
E9 1715-1719 Regulates_Process denotes GER2
E21 1715-1719 Is_Member_Of_Family denotes GER2
E32 1715-1719 Exists_In_Genotype denotes GER2
T40 1864-1900 Pathway denotes conversion of NDP-d-Glc to NDP-l-Rha
T41 1904-1915 Genotype denotes Arabidopsis
T42 1943-1947 Gene denotes MUM4
T43 2010-2014 Gene denotes RHM1
E17 2010-2014 Is_Functionally_Equivalent_To denotes RHM1
T44 2016-2020 Gene denotes MUM4
T45 2021-2025 Gene denotes RHM2
E18 2021-2025 Is_Functionally_Equivalent_To denotes RHM2
T46 2031-2035 Gene denotes RHM3
T47 2160-2164 Gene denotes RHM1
E3 2160-2164 Regulates_Process denotes RHM1
E10 2160-2164 Regulates_Process denotes RHM1
E26 2160-2164 Exists_In_Genotype denotes RHM1
E33 2160-2164 Exists_In_Genotype denotes RHM1
T48 2169-2173 Gene denotes RHM3
E7 2169-2173 Regulates_Process denotes RHM3
E11 2169-2173 Regulates_Process denotes RHM3
E31 2169-2173 Exists_In_Genotype denotes RHM3
E34 2169-2173 Exists_In_Genotype denotes RHM3
T49 2240-2264 Regulatory_Network denotes normal primary cell wall
T50 2247-2264 Tissue denotes primary cell wall
T51 2268-2272 Genotype denotes mum4
E39 2268-2272 Regulates_Process denotes mum4
T52 2289-2306 Regulatory_Network denotes residual mucilage
E14 2289-2306 Is_Localized_In denotes residual mucilage
E22 2289-2306 Occurs_In_Genotype denotes residual mucilage
T53 2318-2322 Genotype denotes mum4
E40 2318-2322 Regulates_Process denotes mum4
T54 2323-2333 Tissue denotes seed coats
T55 2375-2394 Protein_Family denotes NDP-l-Rha synthases
T56 2483-2501 Tissue denotes primary cell walls
T57 2570-2603 Pathway denotes nucleotide sugar interconversions
T58 2617-2623 Genotype denotes plants
R1 E1 T7 Agent MUM4,MUM4
R10 E5 T27 Process "3,5-epimerase",convert dTDP-d-Glc to dTDP-l-Rha
R11 E6 T34 Agent "3,5 epimerase, 4-reductase","3,5 epimerase, 4-reductase"
R12 E6 T37 Process "3,5 epimerase, 4-reductase",synthesis of GDP-l-Fuc from GDP-d-Man
R13 E7 T48 Agent RHM3,RHM3
R14 E7 T49 Process RHM3,normal primary cell wall
R15 E8 T14 Agent MUM4,MUM4
R16 E8 T15 Process MUM4,synthesis of NDP-l-Rha
R17 E9 T39 Agent GER2,GER2
R18 E9 T37 Process GER2,synthesis of GDP-l-Fuc from GDP-d-Man
R19 E10 T47 Agent RHM1,RHM1
R2 E1 T8 Process MUM4,production of activated sugars
R20 E10 T49 Process RHM1,normal primary cell wall
R21 E11 T48 Agent RHM3,RHM3
R22 E11 T52 Process RHM3,residual mucilage
R23 E12 T24 Agent "4,6-dehydratase","4,6-dehydratase"
R24 E12 T27 Process "4,6-dehydratase",convert dTDP-d-Glc to dTDP-l-Rha
R25 E13 T12 Agent "dTDP-d-Glc 4,6-dehydratases","dTDP-d-Glc 4,6-dehydratases"
R26 E13 T13 Process "dTDP-d-Glc 4,6-dehydratases",conversion of dTDP-d-Glc to dTDP-l-Rha
R27 E14 T52 Process residual mucilage,residual mucilage
R28 E14 T54 Target_Tissue residual mucilage,seed coats
R29 E15 T1 Participant MUM4,MUM4
R3 E2 T38 Agent GER1,GER1
R30 E15 T2 Process MUM4,RGI biosynthesis
R31 E16 T18 Element1 RHM2,RHM2
R32 E16 T19 Element2 RHM2,RHAMNOSE BIOSYNTHESIS 2
R33 E17 T43 Element1 RHM1,RHM1
R34 E17 T46 Element2 RHM1,RHM3
R35 E18 T45 Element1 RHM2,RHM2
R36 E18 T44 Element2 RHM2,MUM4
R37 E19 T18 Source RHM2,RHM2
R38 E19 T17 Product RHM2,MUM4
R39 E20 T38 Element GER1,GER1
R4 E2 T37 Process GER1,synthesis of GDP-l-Fuc from GDP-d-Man
R40 E20 T34 Family GER1,"3,5 epimerase, 4-reductase"
R41 E21 T39 Element GER2,GER2
R42 E21 T34 Family GER2,"3,5 epimerase, 4-reductase"
R43 E22 T52 Process residual mucilage,residual mucilage
R44 E22 T53 Genotype residual mucilage,mum4
R45 E23 T26 Molecule 4-reductase,4-reductase
R46 E23 T22 Genotype 4-reductase,Gram-negative bacteria
R47 E24 T38 Molecule GER1,GER1
R48 E24 T33 Genotype GER1,Arabidopsis
R49 E25 T24 Molecule "4,6-dehydratase","4,6-dehydratase"
R5 E3 T47 Agent RHM1,RHM1
R50 E25 T22 Genotype "4,6-dehydratase",Gram-negative bacteria
R51 E26 T47 Molecule RHM1,RHM1
R52 E26 T53 Genotype RHM1,mum4
R53 E27 T25 Molecule "3,5-epimerase","3,5-epimerase"
R54 E27 T22 Genotype "3,5-epimerase",Gram-negative bacteria
R55 E28 T26 Molecule 4-reductase,4-reductase
R56 E28 T23 Genotype 4-reductase,Escherichia coli
R57 E29 T25 Molecule "3,5-epimerase","3,5-epimerase"
R58 E29 T23 Genotype "3,5-epimerase",Escherichia coli
R59 E30 T34 Molecule "3,5 epimerase, 4-reductase","3,5 epimerase, 4-reductase"
R6 E3 T52 Process RHM1,residual mucilage
R60 E30 T33 Genotype "3,5 epimerase, 4-reductase",Arabidopsis
R61 E31 T48 Molecule RHM3,RHM3
R62 E31 T51 Genotype RHM3,mum4
R63 E32 T39 Molecule GER2,GER2
R64 E32 T33 Genotype GER2,Arabidopsis
R65 E33 T47 Molecule RHM1,RHM1
R66 E33 T51 Genotype RHM1,mum4
R67 E34 T48 Molecule RHM3,RHM3
R68 E34 T53 Genotype RHM3,mum4
R69 E35 T24 Molecule "4,6-dehydratase","4,6-dehydratase"
R7 E4 T26 Agent 4-reductase,4-reductase
R70 E35 T23 Genotype "4,6-dehydratase",Escherichia coli
R71 E36 T12 Molecule "dTDP-d-Glc 4,6-dehydratases","dTDP-d-Glc 4,6-dehydratases"
R72 E36 T11 Genotype "dTDP-d-Glc 4,6-dehydratases",bacterial
R73 E37 T22 Agent Gram-negative bacteria,Gram-negative bacteria
R74 E37 T27 Process Gram-negative bacteria,convert dTDP-d-Glc to dTDP-l-Rha
R75 E38 T33 Agent Arabidopsis,Arabidopsis
R76 E38 T37 Process Arabidopsis,synthesis of GDP-l-Fuc from GDP-d-Man
R77 E39 T51 Agent mum4,mum4
R78 E39 T49 Process mum4,normal primary cell wall
R79 E40 T53 Agent mum4,mum4
R8 E4 T27 Process 4-reductase,convert dTDP-d-Glc to dTDP-l-Rha
R80 E40 T52 Process mum4,residual mucilage
R81 E41 T23 Agent Escherichia coli,Escherichia coli
R82 E41 T27 Process Escherichia coli,convert dTDP-d-Glc to dTDP-l-Rha
R83 E42 T11 Agent bacterial,bacterial
R84 E42 T13 Process bacterial,conversion of dTDP-d-Glc to dTDP-l-Rha
R9 E5 T25 Agent "3,5-epimerase","3,5-epimerase"