SeeDev-binary@ldeleger:SeeDev-binary-14701918-3
Annnotations
Below, discontinuous spans are shown in the bag model. You can change it to the chain model.
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 4-26 | Pathway | denotes | production of mucilage |
E27 | 4-26 | Is_Localized_In | denotes | production of mucilage |
T3 | 34-49 | Tissue | denotes | epidermal cells |
T2 | 34-78 | Tissue | denotes | epidermal cells of the Arabidopsis seed coat |
T4 | 57-68 | Genotype | denotes | Arabidopsis |
T5 | 69-78 | Tissue | denotes | seed coat |
T6 | 104-125 | Regulatory_Network | denotes | developmental process |
T7 | 143-154 | Development_Phase | denotes | cell growth |
T8-1 | 168-180,221-230 | Pathway | denotes | biosynthesis of pectin |
T9-1 | 185-200,221-230 | Pathway | denotes | polar secretion of pectin |
T10 | 232-265 | Regulatory_Network | denotes | formation of a cytoplasmic column |
T11 | 274-298 | Regulatory_Network | denotes | cytoplasmic constriction |
E15 | 274-298 | Regulates_Process | denotes | cytoplasmic constriction |
T12 | 303-323 | Regulatory_Network | denotes | vacuolar contraction |
E19 | 303-323 | Regulates_Process | denotes | vacuolar contraction |
T13 | 343-377 | Regulatory_Network | denotes | synthesis of a secondary cell wall |
T15 | 458-467 | Tissue | denotes | Seed coat |
T14 | 458-476 | Pathway | denotes | Seed coat mucilage |
E28 | 458-476 | Is_Localized_In | denotes | Seed coat mucilage |
T16 | 523-534 | Genotype | denotes | Arabidopsis |
T17 | 539-542 | Genotype | denotes | mum |
E23 | 539-542 | Regulates_Process | denotes | mum |
T18 | 544-561 | Genotype | denotes | mucilage-modified |
T19 | 581-600 | Pathway | denotes | mucilage production |
T20-1 | 672-684,705-709 | Genotype | denotes | Mutations in MUM4 |
T21 | 705-709 | Gene | denotes | MUM4 |
E46-1 | 672-684,705-709 | Regulates_Process | denotes | Mutations in MUM4 |
T22-1 | 735-743,751-759 | Pathway | denotes | mucilage released |
T23 | 765-786 | Tissue | denotes | hydrated mature seeds |
E16 | 765-786 | Regulates_Process | denotes | hydrated mature seeds |
T27 | 866-870 | Tissue | denotes | seed |
T26 | 866-875 | Tissue | denotes | seed coat |
T25 | 866-885 | Tissue | denotes | seed coat epidermal |
T24 | 866-897 | Development_Phase | denotes | seed coat epidermal development |
T28 | 941-946 | Tissue | denotes | seeds |
E49 | 941-946 | Regulates_Process | denotes | seeds |
T29 | 960-976 | Pathway | denotes | release mucilage |
T30 | 982-991 | Environmental_Factor | denotes | hydration |
E21 | 982-991 | Regulates_Process | denotes | hydration |
E40 | 982-991 | Is_Linked_To | denotes | hydration |
T31 | 993-1007 | Genotype | denotes | Mutants in AP2 |
E20 | 993-1007 | Regulates_Process | denotes | Mutants in AP2 |
E26 | 993-1007 | Regulates_Process | denotes | Mutants in AP2 |
T32 | 1004-1007 | Gene | denotes | AP2 |
T33 | 1009-1017 | Gene | denotes | APETALA2 |
E32 | 1009-1017 | Is_Functionally_Equivalent_To | denotes | APETALA2 |
T34 | 1041-1072 | Regulatory_Network | denotes | defects in floral morphogenesis |
T35 | 1052-1072 | Development_Phase | denotes | floral morphogenesis |
T36 | 1074-1144 | Regulatory_Network | denotes | lack differentiation past the growth phase of mucilage secretory cells |
T37 | 1104-1116 | Development_Phase | denotes | growth phase |
T39 | 1120-1128 | Pathway | denotes | mucilage |
T38 | 1120-1144 | Tissue | denotes | mucilage secretory cells |
T40 | 1190-1194 | Gene | denotes | TTG1 |
E10 | 1190-1194 | Regulates_Process | denotes | TTG1 |
E12 | 1190-1194 | Regulates_Process | denotes | TTG1 |
E13 | 1190-1194 | Regulates_Process | denotes | TTG1 |
T41 | 1196-1221 | Gene | denotes | TRANSPARENT TESTA GLABRA1 |
E31 | 1196-1221 | Is_Functionally_Equivalent_To | denotes | TRANSPARENT TESTA GLABRA1 |
T42 | 1224-1228 | Gene | denotes | TTG2 |
E11 | 1224-1228 | Regulates_Process | denotes | TTG2 |
E18 | 1224-1228 | Regulates_Process | denotes | TTG2 |
E25 | 1224-1228 | Regulates_Process | denotes | TTG2 |
T43 | 1234-1237 | Gene | denotes | GL2 |
E9 | 1234-1237 | Regulates_Process | denotes | GL2 |
E17 | 1234-1237 | Regulates_Process | denotes | GL2 |
E22 | 1234-1237 | Regulates_Process | denotes | GL2 |
T44 | 1239-1246 | Gene | denotes | GLABRA2 |
E30 | 1239-1246 | Is_Functionally_Equivalent_To | denotes | GLABRA2 |
T46 | 1304-1312 | Tissue | denotes | trichome |
T45 | 1304-1326 | Regulatory_Network | denotes | trichome specification |
T48-1 | 1333-1343,1362-1382 | Regulatory_Network | denotes | defects in columella production |
T50 | 1362-1382 | Pathway | denotes | columella production |
T47-2 | 1333-1343,1349-1357,1372-1382 | Regulatory_Network | denotes | defects in mucilage production |
T49-1 | 1349-1357,1372-1382 | Pathway | denotes | mucilage production |
T51 | 1390-1399 | Tissue | denotes | seed coat |
E35 | 1390-1399 | Regulates_Expression | denotes | seed coat |
E36 | 1390-1399 | Regulates_Expression | denotes | seed coat |
E37 | 1390-1399 | Regulates_Expression | denotes | seed coat |
E47 | 1390-1399 | Regulates_Process | denotes | seed coat |
E48 | 1390-1399 | Regulates_Process | denotes | seed coat |
T52 | 1543-1552 | Tissue | denotes | trichomes |
E41 | 1543-1552 | Regulates_Expression | denotes | trichomes |
E42 | 1543-1552 | Regulates_Expression | denotes | trichomes |
T53 | 1557-1567 | Tissue | denotes | root hairs |
E43 | 1557-1567 | Regulates_Expression | denotes | root hairs |
E44 | 1557-1567 | Regulates_Expression | denotes | root hairs |
T54 | 1573-1577 | Protein | denotes | TTG1 |
E5 | 1573-1577 | Regulates_Expression | denotes | TTG1 |
E6 | 1573-1577 | Regulates_Expression | denotes | TTG1 |
E7 | 1573-1577 | Interacts_With | denotes | TTG1 |
E8 | 1573-1577 | Interacts_With | denotes | TTG1 |
E38 | 1573-1577 | Is_Localized_In | denotes | TTG1 |
E39 | 1573-1577 | Is_Localized_In | denotes | TTG1 |
E53 | 1573-1577 | Is_Linked_To | denotes | TTG1 |
E56 | 1573-1577 | Is_Linked_To | denotes | TTG1 |
E57 | 1573-1577 | Is_Linked_To | denotes | TTG1 |
T56 | 1595-1617 | Protein_Domain | denotes | basic helix-loop-helix |
E29 | 1595-1617 | Is_Functionally_Equivalent_To | denotes | basic helix-loop-helix |
T57 | 1619-1623 | Protein_Domain | denotes | bHLH |
E51 | 1619-1623 | Is_Linked_To | denotes | bHLH |
E54 | 1619-1623 | Is_Linked_To | denotes | bHLH |
E55 | 1619-1623 | Is_Linked_To | denotes | bHLH |
T55-1 | 1595-1617,1625-1632 | Protein_Family | denotes | basic helix-loop-helix protein |
T58 | 1655-1658 | Protein_Family | denotes | MYB |
E52 | 1655-1658 | Is_Linked_To | denotes | MYB |
E58 | 1655-1658 | Is_Linked_To | denotes | MYB |
E59 | 1655-1658 | Is_Linked_To | denotes | MYB |
T59 | 1684-1687 | Gene | denotes | GL2 |
T60 | 1692-1696 | Gene | denotes | TTG2 |
T61 | 1771-1789 | Genotype | denotes | mutations in MYB61 |
E14 | 1771-1789 | Regulates_Process | denotes | mutations in MYB61 |
E24 | 1771-1789 | Regulates_Process | denotes | mutations in MYB61 |
T62 | 1784-1789 | Gene | denotes | MYB61 |
T64 | 1847-1867 | Pathway | denotes | columella production |
T63-1 | 1834-1842,1857-1867 | Pathway | denotes | mucilage production |
T65 | 1875-1886 | Genotype | denotes | Arabidopsis |
T66 | 1887-1896 | Tissue | denotes | seed coat |
E45 | 1887-1896 | Regulates_Process | denotes | seed coat |
E50 | 1887-1896 | Regulates_Process | denotes | seed coat |
T67 | 1982-1986 | Gene | denotes | MUM4 |
T68 | 1994-2034 | Development_Phase | denotes | development of the Arabidopsis seed coat |
T69 | 2013-2024 | Genotype | denotes | Arabidopsis |
T70 | 2025-2034 | Tissue | denotes | seed coat |
T71 | 2064-2068 | Gene | denotes | MUM4 |
T72 | 2090-2094 | Gene | denotes | MUM4 |
E34 | 2090-2094 | Transcribes_Or_Translates_To | denotes | MUM4 |
T73 | 2114-2132 | Protein_Family | denotes | NDP-l-Rha synthase |
T74 | 2165-2198 | Regulatory_Network | denotes | reduced mucilage in the seed coat |
T75 | 2189-2198 | Tissue | denotes | seed coat |
T76 | 2206-2223 | Regulatory_Network | denotes | altered columella |
T77 | 2254-2258 | Gene | denotes | MUM4 |
T79 | 2254-2258 | Gene | denotes | MUM4 |
T81 | 2295-2304 | Tissue | denotes | seed coat |
T80 | 2295-2320 | Development_Phase | denotes | seed coat differentiation |
E4 | 2295-2320 | Regulates_Expression | denotes | seed coat differentiation |
T78-1 | 2254-2258,2335-2345 | RNA | denotes | MUM4 transcript |
T82 | 2374-2401 | Development_Phase | denotes | time of mucilage production |
E33 | 2374-2401 | Regulates_Accumulation | denotes | time of mucilage production |
T83 | 2382-2401 | Pathway | denotes | mucilage production |
T84 | 2416-2420 | Gene | denotes | MUM4 |
T85 | 2507-2510 | Protein | denotes | AP2 |
E3 | 2507-2510 | Regulates_Expression | denotes | AP2 |
T86 | 2512-2516 | Protein | denotes | TTG1 |
E1 | 2512-2516 | Regulates_Expression | denotes | TTG1 |
T87 | 2522-2525 | Protein | denotes | GL2 |
E2 | 2522-2525 | Regulates_Expression | denotes | GL2 |
T88 | 2571-2590 | Pathway | denotes | mucilage production |
T91 | 2613-2617 | Tissue | denotes | seed |
T90 | 2613-2622 | Tissue | denotes | seed coat |
T89 | 2613-2638 | Tissue | denotes | seed coat epidermal cells |
T93 | 2693-2702 | Tissue | denotes | seed coat |
T92 | 2693-2728 | Regulatory_Network | denotes | seed coat epidermal differentiation |
R1 | E1 | T86 | Agent | TTG1,TTG1 |
R10 | E5 | T60 | DNA | TTG1,TTG2 |
R100 | E50 | T63-0 | Process | seed coat, |
R101 | E51 | T57 | Agent1 | bHLH,bHLH |
R102 | E51 | T59 | Agent2 | bHLH,GL2 |
R103 | E52 | T58 | Agent1 | MYB,MYB |
R104 | E52 | T60 | Agent2 | MYB,TTG2 |
R105 | E53 | T54 | Agent1 | TTG1,TTG1 |
R106 | E53 | T60 | Agent2 | TTG1,TTG2 |
R107 | E54 | T57 | Agent1 | bHLH,bHLH |
R108 | E54 | T54 | Agent2 | bHLH,TTG1 |
R109 | E55 | T57 | Agent1 | bHLH,bHLH |
R11 | E6 | T54 | Agent | TTG1,TTG1 |
R110 | E55 | T60 | Agent2 | bHLH,TTG2 |
R111 | E56 | T54 | Agent1 | TTG1,TTG1 |
R112 | E56 | T54 | Agent2 | TTG1,TTG1 |
R113 | E57 | T54 | Agent1 | TTG1,TTG1 |
R114 | E57 | T59 | Agent2 | TTG1,GL2 |
R115 | E58 | T58 | Agent1 | MYB,MYB |
R116 | E58 | T54 | Agent2 | MYB,TTG1 |
R117 | E59 | T58 | Agent1 | MYB,MYB |
R118 | E59 | T59 | Agent2 | MYB,GL2 |
R12 | E6 | T59 | DNA | TTG1,GL2 |
R13 | E7 | T54 | Agent | TTG1,TTG1 |
R14 | E7 | T58 | Target | TTG1,MYB |
R15 | E8 | T54 | Agent | TTG1,TTG1 |
R16 | E8 | T57 | Target | TTG1,bHLH |
R17 | E9 | T43 | Agent | GL2,GL2 |
R18 | E9 | T48-0 | Process | GL2, |
R19 | E10 | T40 | Agent | TTG1,TTG1 |
R2 | E1 | T84 | DNA | TTG1,MUM4 |
R20 | E10 | T45 | Process | TTG1,trichome specification |
R21 | E11 | T42 | Agent | TTG2,TTG2 |
R22 | E11 | T47-0 | Process | TTG2, |
R23 | E12 | T40 | Agent | TTG1,TTG1 |
R24 | E12 | T47-0 | Process | TTG1, |
R25 | E13 | T40 | Agent | TTG1,TTG1 |
R26 | E13 | T48-0 | Process | TTG1, |
R27 | E14 | T61 | Agent | mutations in MYB61,mutations in MYB61 |
R28 | E14 | T64 | Process | mutations in MYB61,columella production |
R29 | E15 | T11 | Agent | cytoplasmic constriction,cytoplasmic constriction |
R3 | E2 | T87 | Agent | GL2,GL2 |
R30 | E15 | T10 | Process | cytoplasmic constriction,"formation of a cytoplasmic column" |
R31 | E16 | T23 | Agent | hydrated mature seeds,hydrated mature seeds |
R32 | E16 | T22-0 | Process | hydrated mature seeds, |
R33 | E17 | T43 | Agent | GL2,GL2 |
R34 | E17 | T47-0 | Process | GL2, |
R35 | E18 | T42 | Agent | TTG2,TTG2 |
R36 | E18 | T48-0 | Process | TTG2, |
R37 | E19 | T12 | Agent | vacuolar contraction,vacuolar contraction |
R38 | E19 | T10 | Process | vacuolar contraction,"formation of a cytoplasmic column" |
R39 | E20 | T31 | Agent | Mutants in AP2,Mutants in AP2 |
R4 | E2 | T84 | DNA | GL2,MUM4 |
R40 | E20 | T34 | Process | Mutants in AP2,defects in floral morphogenesis |
R41 | E21 | T30 | Agent | hydration,hydration |
R42 | E21 | T29 | Process | hydration,release mucilage |
R43 | E22 | T43 | Agent | GL2,GL2 |
R44 | E22 | T45 | Process | GL2,trichome specification |
R45 | E23 | T17 | Agent | mum,mum |
R46 | E23 | T19 | Process | mum,mucilage production |
R47 | E24 | T61 | Agent | mutations in MYB61,mutations in MYB61 |
R48 | E24 | T63-0 | Process | mutations in MYB61, |
R49 | E25 | T42 | Agent | TTG2,TTG2 |
R5 | E3 | T85 | Agent | AP2,AP2 |
R50 | E25 | T45 | Process | TTG2,trichome specification |
R51 | E26 | T31 | Agent | Mutants in AP2,Mutants in AP2 |
R52 | E26 | T36 | Process | Mutants in AP2,"lack differentiation past the growth phase of mucilage secretory cells" |
R53 | E27 | T1 | Process | production of mucilage,production of mucilage |
R54 | E27 | T2 | Target_Tissue | production of mucilage,epidermal cells of the Arabidopsis seed coat |
R55 | E28 | T14 | Process | Seed coat mucilage,Seed coat mucilage |
R56 | E28 | T15 | Target_Tissue | Seed coat mucilage,Seed coat |
R57 | E29 | T56 | Element1 | basic helix-loop-helix,basic helix-loop-helix |
R58 | E29 | T57 | Element2 | basic helix-loop-helix,bHLH |
R59 | E30 | T44 | Element1 | GLABRA2,GLABRA2 |
R6 | E3 | T84 | DNA | AP2,MUM4 |
R60 | E30 | T43 | Element2 | GLABRA2,GL2 |
R61 | E31 | T41 | Element1 | TRANSPARENT TESTA GLABRA1,TRANSPARENT TESTA GLABRA1 |
R62 | E31 | T40 | Element2 | TRANSPARENT TESTA GLABRA1,TTG1 |
R63 | E32 | T33 | Element1 | APETALA2,APETALA2 |
R64 | E32 | T32 | Element2 | APETALA2,AP2 |
R65 | E33 | T82 | Agent | "time of mucilage production","time of mucilage production" |
R66 | E33 | T78-0 | Functional_Molecule | "time of mucilage production", |
R67 | E34 | T72 | Source | MUM4,MUM4 |
R68 | E34 | T73 | Product | MUM4,NDP-l-Rha synthase |
R69 | E35 | T51 | Agent | seed coat,seed coat |
R7 | E4 | T80 | Agent | seed coat differentiation,seed coat differentiation |
R70 | E35 | T40 | DNA | seed coat,TTG1 |
R71 | E36 | T51 | Agent | seed coat,seed coat |
R72 | E36 | T43 | DNA | seed coat,GL2 |
R73 | E37 | T51 | Agent | seed coat,seed coat |
R74 | E37 | T42 | DNA | seed coat,TTG2 |
R75 | E38 | T54 | Functional_Molecule | TTG1,TTG1 |
R76 | E38 | T52 | Target_Tissue | TTG1,trichomes |
R77 | E39 | T54 | Functional_Molecule | TTG1,TTG1 |
R78 | E39 | T53 | Target_Tissue | TTG1,root hairs |
R79 | E40 | T30 | Agent1 | hydration,hydration |
R8 | E4 | T77 | DNA | seed coat differentiation,MUM4 |
R80 | E40 | T28 | Agent2 | hydration,seeds |
R81 | E41 | T52 | Agent | trichomes,trichomes |
R82 | E41 | T59 | DNA | trichomes,GL2 |
R83 | E42 | T52 | Agent | trichomes,trichomes |
R84 | E42 | T60 | DNA | trichomes,TTG2 |
R85 | E43 | T53 | Agent | root hairs,root hairs |
R86 | E43 | T60 | DNA | root hairs,TTG2 |
R87 | E44 | T53 | Agent | root hairs,root hairs |
R88 | E44 | T59 | DNA | root hairs,GL2 |
R89 | E45 | T66 | Agent | seed coat,seed coat |
R9 | E5 | T54 | Agent | TTG1,TTG1 |
R90 | E45 | T64 | Process | seed coat,columella production |
R91 | E46-0 | T20-0 | Agent | , |
R92 | E46-0 | T22-0 | Process | , |
R93 | E47 | T51 | Agent | seed coat,seed coat |
R94 | E47 | T47-0 | Process | seed coat, |
R95 | E48 | T51 | Agent | seed coat,seed coat |
R96 | E48 | T48-0 | Process | seed coat, |
R97 | E49 | T28 | Agent | seeds,seeds |
R98 | E49 | T29 | Process | seeds,release mucilage |
R99 | E50 | T66 | Agent | seed coat,seed coat |