bionlp-ost-19-BB-rel-dev  

BB-rel@ldeleger:BB-rel-15293611 JSONTXT

Annnotations TAB TSV DIC JSON TextAE

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1 0-87 Title denotes Clonal strains of Pseudomonas aeruginosa in paediatric and adult cystic fibrosis units.
T3 18-40 Microorganism denotes Pseudomonas aeruginosa
E1 18-40 Lives_In denotes Pseudomonas aeruginosa
E2 18-40 Lives_In denotes Pseudomonas aeruginosa
T5 44-54 Habitat denotes paediatric
T4-0 44-54 _FRAGMENT denotes paediatric
T7 59-64 Habitat denotes adult
T6 59-86 Habitat denotes adult cystic fibrosis units
T4-1 65-86 Habitat denotes cystic fibrosis units
T2 88-1551 Paragraph denotes Despite recent reports of clonal strains of Pseudomonas aeruginosa in cystic fibrosis (CF) units, the need for routine microbiological surveillance remains contentious. Sputum was collected prospectively from productive patients attending the regional paediatric and adult CF units in Brisbane, Australia. All P. aeruginosa isolates were typed using pulsed-field gel electrophoresis. Spirometry, anthropometrics, hospitalisations and antibiotic sensitivity data were recorded. The first 100 sputum samples (first 50 patients at each clinic) harboured 163 isolates of P. aeruginosa. A total of 39 patients shared a common strain (pulsotype 2), 20 patients shared a strain with at least one other patient and 41 patients harboured unique strains. Eight patients shared a strain identical to a previously reported Australian transmissible strain (pulsotype 1). Compared with the unique strain group, patients harbouring pulsotype 2 were younger and had poorer lung function. Treatment requirements were similar in these two groups, as were the rates of multiresistance. In conclusion, 59% of patients harboured a clonal strain, supporting the need for routine microbiological surveillance. In contrast to previously described clonal strains, the dominant pulsotype was indistinguishable from nonclonal strains with respect to both colonial morphology and multiresistance. The clinical significance of clonal strains remains uncertain and requires longitudinal study.
T8 132-154 Microorganism denotes Pseudomonas aeruginosa
E3 132-154 Lives_In denotes Pseudomonas aeruginosa
T9 158-184 Habitat denotes cystic fibrosis (CF) units
T10 257-263 Habitat denotes Sputum
T11 297-316 Habitat denotes productive patients
T12-0 331-339 _FRAGMENT denotes regional
T13-0 331-350 _FRAGMENT denotes regional paediatric
T14 340-350 Habitat denotes paediatric
T15 355-360 Habitat denotes adult
T12-1 355-369 Habitat denotes adult CF units
T13-1 361-369 Habitat denotes CF units
T16 373-381 Geographical denotes Brisbane
T17 383-392 Geographical denotes Australia
T18 398-411 Microorganism denotes P. aeruginosa
E4 398-411 Lives_In denotes P. aeruginosa
E5 398-411 Lives_In denotes P. aeruginosa
E6 398-411 Lives_In denotes P. aeruginosa
E7 398-411 Lives_In denotes P. aeruginosa
T19 522-544 Phenotype denotes antibiotic sensitivity
T20 579-585 Habitat denotes sputum
T21 604-612 Habitat denotes patients
T22 621-627 Habitat denotes clinic
T23 655-668 Microorganism denotes P. aeruginosa
E8 655-668 Lives_In denotes P. aeruginosa
E9 655-668 Lives_In denotes P. aeruginosa
E10 655-668 Lives_In denotes P. aeruginosa
E11 655-668 Lives_In denotes P. aeruginosa
E12 655-668 Lives_In denotes P. aeruginosa
E13 655-668 Lives_In denotes P. aeruginosa
E14 655-668 Lives_In denotes P. aeruginosa
E15 655-668 Lives_In denotes P. aeruginosa
E16 655-668 Lives_In denotes P. aeruginosa
E17 655-668 Exhibits denotes P. aeruginosa
T24 684-692 Habitat denotes patients
T25 734-742 Habitat denotes patients
T26 783-790 Habitat denotes patient
T27 798-806 Habitat denotes patients
T28 839-847 Habitat denotes patients
T29 985-993 Habitat denotes patients
T30 1045-1049 Habitat denotes lung
T31 1138-1153 Phenotype denotes multiresistance
T32 1177-1185 Habitat denotes patients
T33 1416-1435 Phenotype denotes colonial morphology
T34 1440-1455 Phenotype denotes multiresistance
C-T12-0 T12-1 T12-0 _lexicallyChainedTo adult CF units,regional
C-T13-0 T13-1 T13-0 _lexicallyChainedTo CF units,regional paediatric
C-T4-0 T4-1 T4-0 _lexicallyChainedTo cystic fibrosis units,paediatric
R1 E1 T3 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R10 E5 T10 Location P. aeruginosa,Sputum
R11 E6 T18 Microorganism P. aeruginosa,P. aeruginosa
R12 E6 T17 Location P. aeruginosa,Australia
R13 E7 T18 Microorganism P. aeruginosa,P. aeruginosa
R14 E7 T16 Location P. aeruginosa,Brisbane
R15 E8 T23 Microorganism P. aeruginosa,P. aeruginosa
R16 E8 T24 Location P. aeruginosa,patients
R17 E9 T23 Microorganism P. aeruginosa,P. aeruginosa
R18 E9 T28 Location P. aeruginosa,patients
R19 E10 T23 Microorganism P. aeruginosa,P. aeruginosa
R2 E1 T6 Location Pseudomonas aeruginosa,adult cystic fibrosis units
R20 E10 T26 Location P. aeruginosa,patient
R21 E11 T23 Microorganism P. aeruginosa,P. aeruginosa
R22 E11 T32 Location P. aeruginosa,patients
R23 E12 T23 Microorganism P. aeruginosa,P. aeruginosa
R24 E12 T25 Location P. aeruginosa,patients
R25 E13 T23 Microorganism P. aeruginosa,P. aeruginosa
R26 E13 T20 Location P. aeruginosa,sputum
R27 E14 T23 Microorganism P. aeruginosa,P. aeruginosa
R28 E14 T29 Location P. aeruginosa,patients
R29 E15 T23 Microorganism P. aeruginosa,P. aeruginosa
R3 E2 T3 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R30 E15 T21 Location P. aeruginosa,patients
R31 E16 T23 Microorganism P. aeruginosa,P. aeruginosa
R32 E16 T27 Location P. aeruginosa,patients
R33 E17 T23 Microorganism P. aeruginosa,P. aeruginosa
R34 E17 T31 Property P. aeruginosa,multiresistance
R4 E2 T4-0 Location Pseudomonas aeruginosa,paediatric
R5 E3 T8 Microorganism Pseudomonas aeruginosa,Pseudomonas aeruginosa
R6 E3 T9 Location Pseudomonas aeruginosa,cystic fibrosis (CF) units
R7 E4 T18 Microorganism P. aeruginosa,P. aeruginosa
R8 E4 T11 Location P. aeruginosa,productive patients
R9 E5 T18 Microorganism P. aeruginosa,P. aeruginosa