bionlp-ost-19-BB-norm-ner-train  

BB-norm+ner@ldeleger:BB-norm+ner-8532424 JSONTXT

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Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T3 0-11 Habitat denotes Respiratory OBT:000407
T1 0-63 Title denotes Respiratory carriage of Kingella kingae among healthy children.
T4 24-39 Microorganism denotes Kingella kingae 504
T5 46-62 Habitat denotes healthy children OBT:003188|OBT:002712
T2 64-1552 Paragraph denotes The role of Kingella kingae as an invasive pathogen of young children is being increasingly recognized, but the niche of the organism in the respiratory tract and its prevalence in the normal flora of children remain unknown. To investigate these two aspects throat and nasopharyngeal cultures were obtained every 2 weeks from two cohorts of children, ages 6 to 42 months on enrollment, attending a day-care center in southern Israel. To determine the age-related prevalence of K. kingae, throat cultures were obtained from children ages 6 months to 14 years hospitalized for elective surgery who had not received antibiotics during the previous 30 days and from healthy infants younger than 6 months attending a well-baby-care clinic for routine vaccinations. During an 11-month follow-up 109 of 624 (27.5%) throat cultures but none of the nasopharyngeal cultures obtained from 48 day-care center attendees grew K. kingae. The monthly prevalence of K. kingae ranged from 6.1 to 34.6% with December and April peaks. Overall 35 of 48 (72.9%) children had at least one positive culture for the organism. Among the 27 children who had > or = 2 positive cultures, continuous and intermittent patterns of carriage were observed. None of the colonized children experienced an invasive K. kingae infection. The prevalence of pharyngeal carriage among surgical patients was 8.0%, and the organism was not isolated from any of the infants younger than 6 months attending the well-baby-care clinic.
T6 76-91 Microorganism denotes Kingella kingae 504
T7 98-133 Phenotype denotes invasive pathogen of young children OBT:002806
T8 119-133 Habitat denotes young children OBT:003188
T9 205-222 Habitat denotes respiratory tract OBT:000407
T10 249-273 Habitat denotes normal flora of children OBT:000113
T11 265-273 Habitat denotes children OBT:003188
T12 323-329 Habitat denotes throat OBT:000918
T13-0 323-329 _FRAGMENT denotes throat OBT:000110
T15 334-348 Habitat denotes nasopharyngeal OBT:000757
T14 334-357 Habitat denotes nasopharyngeal cultures OBT:000110
T13-1 349-357 Habitat denotes cultures
T16 395-414 Habitat denotes cohorts of children OBT:003188
T17 463-478 Habitat denotes day-care center OBT:000963
T18 542-551 Microorganism denotes K. kingae 504
T20 553-559 Habitat denotes throat OBT:000918
T19 553-568 Habitat denotes throat cultures OBT:000110
T21 588-622 Habitat denotes children ages 6 months to 14 years OBT:003184|OBT:003188
T22 623-635 Habitat denotes hospitalized OBT:002714
T23 727-764 Habitat denotes healthy infants younger than 6 months OBT:003263|OBT:002712
T24 777-798 Habitat denotes well-baby-care clinic OBT:002694
T25 782-786 Habitat denotes baby OBT:003184
T27 873-879 Habitat denotes throat OBT:000918
T26 873-888 Habitat denotes throat cultures OBT:000110
T29 905-919 Habitat denotes nasopharyngeal OBT:000757
T28 905-928 Habitat denotes nasopharyngeal cultures OBT:000110
T31 946-961 Habitat denotes day-care center OBT:000963
T30 946-971 Habitat denotes day-care center attendees OBT:003269|OBT:003188
T32 977-986 Microorganism denotes K. kingae 504
T33 1014-1023 Microorganism denotes K. kingae 504
T34 1105-1113 Habitat denotes children OBT:003188
T35 1179-1187 Habitat denotes children OBT:003188
T36 1300-1318 Habitat denotes colonized children OBT:003188|OBT:003269
T37 1343-1352 Microorganism denotes K. kingae 504
T38 1382-1392 Habitat denotes pharyngeal OBT:002832
T39 1408-1425 Habitat denotes surgical patients OBT:003220|OBT:003188
T40 1486-1515 Habitat denotes infants younger than 6 months OBT:003263
T41 1530-1551 Habitat denotes well-baby-care clinic OBT:002694
T42 1535-1539 Habitat denotes baby OBT:003184
C-T13-0 T13-1 T13-0 _lexicallyChainedTo cultures,throat