bionlp-ost-19-BB-norm-ner-train  

BB-norm+ner@ldeleger:BB-norm+ner-19099664 JSONTXT

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-100 Title denotes [Changes of pathogens and susceptibility to antibiotics in hematology ward from years 2001 to 2005].
T3 12-21 Phenotype denotes pathogens OBT:000375
T4 26-55 Phenotype denotes susceptibility to antibiotics OBT:002675
T5 59-74 Habitat denotes hematology ward OBT:000097
T2 101-1277 Paragraph denotes The purpose of this study was to determine the changes of pathogens in hematological ward and susceptibility of patients received chemotherapy to antibiotics. The pathogens were taken from blood, urine and sputum of patients who accepted chemotherapy from years 2001 to 2005, then were isolated and identified. The susceptibility test was performed by disk diffusion method. The results showed that the total of 418 strains were detected. Gram-negative bacteria were the most common of nosocomial infection. Pseudomonas aeruginosa, Enterobacter cloacae, E. coli account for the most of Gram negative- bacteria infection and most resistant to broad-spectrum penicillin, Acinetobacter baumannii showed a trend of increase. The ratios of gram positive bacteria and fungi were increased slowly, mainly as Enterococcus and Candida. Enterococcus is the most common cause of Gram-positive bacterial infection. Vancomycin resistance did not occur. It is concluded that Gram-negative bacteria are main cause of nosocomial infection in patients with hematological malignancies. Gram positive bacteria and fungi had been more frequent. Strains resistant to antimicrobial agents increase.
T6 159-168 Phenotype denotes pathogens OBT:000375
T7 172-190 Habitat denotes hematological ward OBT:000097
T8 213-243 Habitat denotes patients received chemotherapy OBT:003220
T9 264-273 Phenotype denotes pathogens OBT:000375
T10-0 290-295 _FRAGMENT denotes blood OBT:000521
T11-0 297-302 _FRAGMENT denotes urine OBT:001367
T12 307-351 Habitat denotes sputum of patients who accepted chemotherapy OBT:001335
T10-1 314-351 Habitat denotes of patients who accepted chemotherapy
T11-1 314-351 Habitat denotes of patients who accepted chemotherapy
T13 317-351 Habitat denotes patients who accepted chemotherapy OBT:003220
T14 540-553 Phenotype denotes Gram-negative OBT:000648
T15 587-597 Habitat denotes nosocomial OBT:000011
T16 609-631 Microorganism denotes Pseudomonas aeruginosa 287
T17 633-653 Microorganism denotes Enterobacter cloacae 550
T18 655-662 Microorganism denotes E. coli 562
T19 687-700 Phenotype denotes Gram negative OBT:000648
T20 730-768 Phenotype denotes resistant to broad-spectrum penicillin OBT:002829
T21 770-793 Microorganism denotes Acinetobacter baumannii 470
T22 836-849 Phenotype denotes gram positive OBT:000649
T23 902-914 Microorganism denotes Enterococcus 1350
T24 919-926 Microorganism denotes Candida 1535326
T25 928-940 Microorganism denotes Enterococcus 1350
T26 969-982 Phenotype denotes Gram-positive OBT:000649
T27 1004-1025 Phenotype denotes Vancomycin resistance OBT:002874
T28 1062-1075 Phenotype denotes Gram-negative OBT:000648
T29 1103-1113 Habitat denotes nosocomial OBT:000011
T30 1127-1167 Habitat denotes patients with hematological malignancies OBT:003220
T31 1169-1182 Phenotype denotes Gram positive OBT:000649
T32 1234-1267 Phenotype denotes resistant to antimicrobial agents OBT:002337
C-T10-0 T10-1 T10-0 _lexicallyChainedTo of patients who accepted chemotherapy,blood
C-T11-0 T11-1 T11-0 _lexicallyChainedTo of patients who accepted chemotherapy,urine