bionlp-ost-19-BB-norm-ner-dev  

BB-norm+ner@ldeleger:BB-norm+ner-16458564 JSONTXT

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Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-68 Title denotes Etiology and epidemiology of diarrhea in children in Hanoi, Vietnam.
T6 41-49 Habitat denotes children OBT:003188
T2 69-272 Paragraph denotes This paper provides a preliminary picture of diarrhea with regards to etiology, clinical symptoms, and some related epidemiologic factors in children less than five years of age living in Hanoi, Vietnam.
T7 210-246 Habitat denotes children less than five years of age OBT:003188
T3 273-586 Paragraph denotes The study population included 587 children with diarrhea and 249 age-matched healthy controls. The identification of pathogens was carried out by the conventional methods in combination with ELISA, immunoseparation, and PCR. The antibiotic susceptibility was determined by MIC following the NCCLS recommendations.
T8 277-293 Habitat denotes study population OBT:003188
T9 307-329 Habitat denotes children with diarrhea OBT:003188|OBT:003156
T10 338-366 Habitat denotes age-matched healthy controls OBT:003188|OBT:002712
T11 390-399 Phenotype denotes pathogens OBT:002806
T12 502-527 Phenotype denotes antibiotic susceptibility OBT:002675
T4 587-2024 Paragraph denotes Of those with diarrhea, 40.9% were less than one year old and 71.0% were less than two years old. A potential pathogen was identified in 67.3% of children with diarrhea. They were group A rotavirus, diarrheagenic Escherichia coli, Shigella spp, and enterotoxigenic Bacteroides fragilis, with prevalences of 46.7%, 22.5%, 4.7%, and 7.3%, respectively. No Salmonella spp or Vibrio cholerae were isolated. Rotavirus and diarrheagenic E. coli were predominant in children less than two years of age, while Shigella spp, and enterotoxigenic B. fragilis were mostly seen in the older children. Diarrheagenic E. coli and Shigella spp showed high prevalence of resistance to ampicillin, chloramphenicol, and to trimethoprim/sulfamethoxazole. Children attending the hospitals had fever (43.6%), vomiting (53.8%), and dehydration (82.6%). Watery stool was predominant with a prevalence of 66.4%, followed by mucous stool (21.0%). The mean episodes of stools per day was seven, ranging from two to 23 episodes. Before attending hospitals, 162/587 (27.6%) children had been given antibiotics. Overall, more children got diarrhea in (i) poor families; (ii) families where piped water and a latrine were lacking; (iii) families where mothers washed their hands less often before feeding the children; (iv) families where mothers had a low level of education; (v) families where information on health and sanitation less often reached their households.
T13 697-705 Phenotype denotes pathogen OBT:002806
T14 733-755 Habitat denotes children with diarrhea OBT:003188|OBT:003156
T15 767-784 Microorganism denotes group A rotavirus 28875
T16 786-799 Phenotype denotes diarrheagenic OBT:002806
T17 800-816 Microorganism denotes Escherichia coli 562
T18 818-830 Microorganism denotes Shigella spp 620
T19 836-851 Phenotype denotes enterotoxigenic OBT:002806
T20 852-872 Microorganism denotes Bacteroides fragilis 817
T21 941-955 Microorganism denotes Salmonella spp 590
T22 959-974 Microorganism denotes Vibrio cholerae 666
T23 990-999 Microorganism denotes Rotavirus 10912
T24 1004-1017 Phenotype denotes diarrheagenic OBT:002806
T25 1018-1025 Microorganism denotes E. coli 562
T26 1046-1081 Habitat denotes children less than two years of age OBT:003156|OBT:003184
T27 1089-1101 Microorganism denotes Shigella spp 620
T28 1107-1122 Phenotype denotes enterotoxigenic OBT:002806
T29 1123-1134 Microorganism denotes B. fragilis 817
T30 1159-1173 Habitat denotes older children OBT:003156|OBT:003188
T31 1175-1188 Phenotype denotes Diarrheagenic OBT:002806
T32 1189-1196 Microorganism denotes E. coli 562
T33 1201-1213 Microorganism denotes Shigella spp 620
T36-0 1240-1253 _FRAGMENT denotes resistance to OBT:002772
T34-0 1240-1253 _FRAGMENT denotes resistance to OBT:002844
T35 1240-1264 Phenotype denotes resistance to ampicillin OBT:002762
T36-1 1266-1281 Phenotype denotes chloramphenicol
T34-1 1290-1319 Phenotype denotes trimethoprim/sulfamethoxazole
T37 1321-1353 Habitat denotes Children attending the hospitals OBT:003269|OBT:003188
T38 1344-1353 Habitat denotes hospitals OBT:002714
T39 1416-1428 Habitat denotes Watery stool OBT:001102
T41 1485-1491 Habitat denotes mucous OBT:001220
T40 1485-1497 Habitat denotes mucous stool OBT:001102
T42 1528-1534 Habitat denotes stools OBT:001102
T43 1604-1613 Habitat denotes hospitals OBT:002714
T44 1631-1639 Habitat denotes children OBT:003188|OBT:003269
T45 1682-1690 Habitat denotes children OBT:003188|OBT:003269
T46 1746-1757 Habitat denotes piped water OBT:001530
T47 1764-1771 Habitat denotes latrine OBT:000702
T48 1807-1814 Habitat denotes mothers OBT:003491
T49 1864-1872 Habitat denotes children OBT:003188|OBT:003269
T50 1894-1901 Habitat denotes mothers OBT:003491
T51 2025-2042 Microorganism denotes Group A rotavirus 28875
T5 2025-2431 Paragraph denotes Group A rotavirus, diarrheagenic Escherichia coli, Shigella spp, and enterotoxigenic Bacteroides fragilis play an important role in causing diarrhea in children in Hanoi, Vietnam. Epidemiological factors such as lack of fresh water supply, unhygienic septic tank, low family income, lack of health information, and low educational level of parents could contribute to the morbidity of diarrhea in children.
T52 2044-2057 Phenotype denotes diarrheagenic OBT:002806
T53 2058-2074 Microorganism denotes Escherichia coli 562
T54 2076-2088 Microorganism denotes Shigella spp 620
T55 2094-2109 Phenotype denotes enterotoxigenic OBT:002806
T56 2110-2130 Microorganism denotes Bacteroides fragilis 817
T57 2177-2185 Habitat denotes children OBT:003188
T58 2245-2256 Habitat denotes fresh water OBT:002455
T59 2245-2263 Habitat denotes fresh water supply OBT:001082
T60 2265-2287 Habitat denotes unhygienic septic tank OBT:003116
T61 2422-2430 Habitat denotes children OBT:003188
C-T34-0 T34-1 T34-0 _lexicallyChainedTo trimethoprim/sulfamethoxazole,resistance to
C-T36-0 T36-1 T36-0 _lexicallyChainedTo chloramphenicol,resistance to