| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T404 |
0-112 |
Sentence |
denotes |
For classification of samples by LAMP-sequencing, reads were assigned to wells and counted using custom scripts. |
| T405 |
113-336 |
Sentence |
denotes |
A read was considered as a match to SARS-CoV-2 N gene if at least one of three short sequences (~13 nt, marked orange in fig. S4A) not covered by RT-LAMP primers was found in the read, otherwise it was counted as unmatched. |
| T406 |
337-454 |
Sentence |
denotes |
Sequencing reads were grouped by UMI and by position of the matched sequence with the aim of removing PCR duplicates. |
| T407 |
455-595 |
Sentence |
denotes |
A sample was considered if more than 200 total UMIs were observed and called positive if more than 10,000 virus-matching UMIs were observed. |
