| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T476 |
0-66 |
Sentence |
denotes |
The platform allows users to query any gene in any selected study. |
| T477 |
67-214 |
Sentence |
denotes |
The corresponding data is displayed in commonly employed formats including a series of violin plots and as a set of dimensionality reduction plots. |
| T478 |
215-366 |
Sentence |
denotes |
Expression is summarized by listing the percent of cells expressing Gene G in each annotated cluster and the mean expression of Gene G in each cluster. |
| T479 |
367-601 |
Sentence |
denotes |
To measure the specificity of Gene G expression to each Cluster C, we compute a Cohen’s D value which assesses the effect size between the mean expression of Gene G in cluster C and the mean expression of Gene G in all other clusters. |
| T480 |
602-814 |
Sentence |
denotes |
Specifically, the Cohen’s D formula is given as follows: (MeanC - MeanA)/(sqrt(StDevC2 + StDevA2)) , where C represents the cluster of interest and A represents the complement of C (i.e. all other cell clusters). |
| T481 |
815-992 |
Sentence |
denotes |
Note that this is functionally similar to the computation of paired fold change values and p-values between clusters which is frequently used to identify cluster-defining genes. |
