| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T378 |
0-37 |
Sentence |
denotes |
REAGENT or RESOURCE SOURCE IDENTIFIER |
| T379 |
38-48 |
Sentence |
denotes |
Antibodies |
| T380 |
49-106 |
Sentence |
denotes |
Phospho-p38 MAPK (Thr180/Tyr182) Cell Signaling Cat#9211S |
| T381 |
107-152 |
Sentence |
denotes |
ɑ-Rabbit IgG HRP Conjugate Biorad Cat#1706515 |
| T382 |
153-197 |
Sentence |
denotes |
ɑ-Mouse IgG HRP Conjugate Biorad Cat#1706516 |
| T383 |
198-303 |
Sentence |
denotes |
SARS-CoV-2 N (recombinant mouse monoclonal) Donated from the laboratory of Thomas Moran (Mount Sinai) N/A |
| T384 |
304-334 |
Sentence |
denotes |
GAPDH Cell Signaling Cat#2118S |
| T385 |
335-383 |
Sentence |
denotes |
Phospho-MAPKAPK2 (T334) Cell Signaling Cat#3007T |
| T386 |
384-434 |
Sentence |
denotes |
Phospho-CREB/ATF-1 (S133) Cell Signaling Cat#9198S |
| T387 |
435-457 |
Sentence |
denotes |
CK2α Abcam Cat#ab70774 |
| T388 |
458-504 |
Sentence |
denotes |
SARS-CoV membrane (M) Rockland Cat#100-401-A55 |
| T389 |
505-555 |
Sentence |
denotes |
SARS-CoV nucleocapsid (N) Rockland Cat#200-401-A50 |
| T390 |
556-612 |
Sentence |
denotes |
AF568-labeled goat-anti-rabbit InvitrogenCat# Cat#A11011 |
| T391 |
613-664 |
Sentence |
denotes |
AF647-labeled goat-anti-mouse Invitrogen Cat#A21235 |
| T392 |
665-710 |
Sentence |
denotes |
AF488-labeled Phalloidin Hypermol Cat#8813-01 |
| T393 |
711-775 |
Sentence |
denotes |
viral NP protein anti-sera produced in the Garcia-Sastre lab N/A |
| T394 |
776-803 |
Sentence |
denotes |
Bacterial and Virus Strains |
| T395 |
804-906 |
Sentence |
denotes |
SARS-CoV-2, isolate BetaCoV/France/IDF0372/2020 European Virus Archive goes Global (EVAg) IDF0372/2020 |
| T396 |
907-966 |
Sentence |
denotes |
SARS-CoV-2, isolate USA-WA1/2020 BEI Resources Cat#NR-52281 |
| T397 |
967-1059 |
Sentence |
denotes |
SARS-CoV-2, Isolate Muc-IMB-1/2020 Bundeswehr Institute of Microbiology, Munich, Germany N/A |
| T398 |
1060-1105 |
Sentence |
denotes |
Chemicals, Peptides, and Recombinant Proteins |
| T399 |
1106-1188 |
Sentence |
denotes |
cOmplete protease inhibitor cocktail tablets mini, EDTA-free Roche Cat#11846170001 |
| T400 |
1189-1257 |
Sentence |
denotes |
PhosStop phosphatase inhibitor cocktail tablets Roche Cat#4906837001 |
| T401 |
1258-1300 |
Sentence |
denotes |
Sep-Pak C18 cartridge Waters Cat#WAT054955 |
| T402 |
1301-1352 |
Sentence |
denotes |
Sequencing-grade modified trypsin Promega Cat#V5111 |
| T403 |
1353-1412 |
Sentence |
denotes |
Fetal bovine serum (FBS) Thermo Fisher Scientific Cat#10082 |
| T404 |
1413-1456 |
Sentence |
denotes |
DMEM Thermo Fisher Scientific Cat#MT10013CV |
| T405 |
1457-1518 |
Sentence |
denotes |
Water, HPLC grade Sigma-Aldrich Cat#270733-4 L; CAS#7732-18-5 |
| T406 |
1519-1558 |
Sentence |
denotes |
Ni-NTA Superflow beads QIAGEN Cat#30210 |
| T407 |
1559-1604 |
Sentence |
denotes |
Igepal Sigma-Aldrich Cat#I3021; CAS#9002-93-1 |
| T408 |
1605-1656 |
Sentence |
denotes |
Minimal Essential Media (MEM) Corning Cat#10-009-CV |
| T409 |
1657-1703 |
Sentence |
denotes |
Opti-MEM Thermo Fisher Scientific Cat#31985062 |
| T410 |
1704-1781 |
Sentence |
denotes |
Paraformaldehyde, 4% solution in PBS (PFA) Thermo Scientific Cat#MFCD00133991 |
| T411 |
1782-1877 |
Sentence |
denotes |
Formalin Fisher Scientific Cat#SF100-20; CAS#50-00-0, 67-56-1, 7558-79-4, 10049-21-5, 7732-18-5 |
| T412 |
1878-1942 |
Sentence |
denotes |
4′,6-diamidino-2-phenylindole (DAPI) Thermo Scientific Cat#62247 |
| T413 |
1943-2001 |
Sentence |
denotes |
ReprosilPur 1.9 μm particles ESI SOURCE SOLUTIONS Cat#R119 |
| T414 |
2002-2054 |
Sentence |
denotes |
Crystal Violet Solution Sigma Aldrich Cat#HT90132-1L |
| T415 |
2055-2095 |
Sentence |
denotes |
Thermanox coverslips Ted Pella Cat#26028 |
| T416 |
2096-2129 |
Sentence |
denotes |
Silicon Chips Ted Pella Cat#16007 |
| T417 |
2130-2174 |
Sentence |
denotes |
Aluminum specimen mounts Ted Pella Cat#16111 |
| T418 |
2175-2221 |
Sentence |
denotes |
Double-sided carbon tape Ted Pella Cat#16084-1 |
| T419 |
2222-2284 |
Sentence |
denotes |
Karnovsky’s EM fixative Electron Microscopy Sciences Cat#15720 |
| T420 |
2285-2337 |
Sentence |
denotes |
Sodium Cacodylate Sigma Cat#C4945-10G; CAS#6131-99-3 |
| T421 |
2338-2409 |
Sentence |
denotes |
Osmium Tetroxide Electron Microscopy Sciences Cat#19190; CAS#20816-12-0 |
| T422 |
2410-2465 |
Sentence |
denotes |
Potassium Ferrocyanide Sigma Cat#P-3289; CAS#14459-95-1 |
| T423 |
2466-2515 |
Sentence |
denotes |
Uranyl Acetate Ted Pella Cat#19481; CAS#6159-44-0 |
| T424 |
2516-2554 |
Sentence |
denotes |
Spurr’s resin Ted Pella Cat#18300-4221 |
| T425 |
2555-2607 |
Sentence |
denotes |
Iridium target Electron Microscopy Sciences Cat#3431 |
| T426 |
2608-2637 |
Sentence |
denotes |
PolyJet SignaGen Cat#SL100688 |
| T427 |
2638-2698 |
Sentence |
denotes |
SuperScript IV Reverse Transcriptase Invitrogen Cat#18090010 |
| T428 |
2699-2769 |
Sentence |
denotes |
ARRY-371797 (ARRY-797) MedKoo Biosciences Cat#555466; CAS#1036404-17-7 |
| T429 |
2770-2837 |
Sentence |
denotes |
Dilmapimod (SB-681323) MedChemExpress Cat#HY-10404; CAS#444606-18-2 |
| T430 |
2838-2899 |
Sentence |
denotes |
Doramapimod (BIRB-796) SelleckChem Cat#S1574; CAS#285983-48-4 |
| T431 |
2900-2949 |
Sentence |
denotes |
Losmapimod SelleckChem Cat#S7215; CAS#585543-15-3 |
| T432 |
2950-3006 |
Sentence |
denotes |
MAPK13-IN-1 MedChemExpress Cat#HY-18850; CAS#229002-10-2 |
| T433 |
3007-3067 |
Sentence |
denotes |
Neflamapimod (VX-745) SelleckChem Cat#S1458; CAS#209410-46-8 |
| T434 |
3068-3131 |
Sentence |
denotes |
P38 MAPK Inhibitor (4) Cayman Chemical Cat#22219; CAS#1638-41-1 |
| T435 |
3132-3186 |
Sentence |
denotes |
PF-3644022 Tocris Bioscience Cat#4483; CAS#142557-61-7 |
| T436 |
3187-3235 |
Sentence |
denotes |
PH-797804 SelleckChem Cat#S2726; CAS#586379-66-0 |
| T437 |
3236-3298 |
Sentence |
denotes |
Ralimetinib (LY2228820) SelleckChem Cat#S1494; CAS#862507-23-1 |
| T438 |
3299-3346 |
Sentence |
denotes |
SB203580 SelleckChem Cat#S1076; CAS#152121-47-6 |
| T439 |
3347-3393 |
Sentence |
denotes |
TAK-715 SelleckChem Cat#S2928; CAS#303162-79-0 |
| T440 |
3394-3460 |
Sentence |
denotes |
Talmapimod (SCIO-469) MedChemExpress Cat#HY-10406; CAS#309913-83-5 |
| T441 |
3461-3506 |
Sentence |
denotes |
VX-702 SelleckChem Cat#S6005; CAS#745833-23-2 |
| T442 |
3507-3552 |
Sentence |
denotes |
4EGI-1 SelleckChem Cat#S7369; CAS#315706-13-9 |
| T443 |
3553-3606 |
Sentence |
denotes |
A-484954 Tocris Bioscience Cat#4279; CAS#1276121-88-0 |
| T444 |
3607-3667 |
Sentence |
denotes |
Abemaciclib mesylate SelleckChem Cat#S7158; CAS#1231930-82-7 |
| T445 |
3668-3717 |
Sentence |
denotes |
Alisertib SelleckChem Cat#S1133; CAS#1028486-01-2 |
| T446 |
3718-3765 |
Sentence |
denotes |
Apilimod SelleckChem Cat#S6414; CAS#541550-19-0 |
| T447 |
3766-3814 |
Sentence |
denotes |
AT-13148 SelleckChem Cat#S7563; CAS#1056901-62-2 |
| T448 |
3815-3863 |
Sentence |
denotes |
AZD-1208 SelleckChem Cat#S7104; CAS#1204144-28-4 |
| T449 |
3864-3927 |
Sentence |
denotes |
AZD-5363 (Capivasertib) SelleckChem Cat#S8019; CAS#1143532-39-1 |
| T450 |
3928-3976 |
Sentence |
denotes |
AZD-7648 SelleckChem Cat#S8843; CAS#2230820-11-6 |
| T451 |
3977-4025 |
Sentence |
denotes |
Bafetinib SelleckChem Cat#S1369; CAS#859212-16-1 |
| T452 |
4026-4075 |
Sentence |
denotes |
BMS-582949 SelleckChem Cat#S8124; CAS#623152-17-0 |
| T453 |
4076-4134 |
Sentence |
denotes |
Bortezomib (PS-341) SelleckChem Cat#S1013; CAS#179324-69-7 |
| T454 |
4135-4184 |
Sentence |
denotes |
CHIR-98014 SelleckChem Cat#S2745; CAS#252935-94-7 |
| T455 |
4185-4248 |
Sentence |
denotes |
Dabrafenib (GSK2118436) SelleckChem Cat#S2807; CAS#1195765-45-7 |
| T456 |
4249-4297 |
Sentence |
denotes |
Dasatinib SelleckChem Cat#S1021; CAS#302962-49-8 |
| T457 |
4298-4347 |
Sentence |
denotes |
Dinaciclib SelleckChem Cat#S2768; CAS#779353-01-4 |
| T458 |
4348-4405 |
Sentence |
denotes |
Dorsomorphin 2HCl SelleckChem Cat#S7306; CAS#1219168-18-9 |
| T459 |
4406-4458 |
Sentence |
denotes |
EHT 1864 2HCl SelleckChem Cat#S7482; CAS#754240-09-0 |
| T460 |
4459-4509 |
Sentence |
denotes |
Enzastaurin SelleckChem Cat#S1055; CAS#170364-57-5 |
| T461 |
4510-4554 |
Sentence |
denotes |
Fludarabine SelleckChem Cat#S1491; CAS#S1491 |
| T462 |
4555-4653 |
Sentence |
denotes |
Fosbretabulin (Combretastatin A4 Phosphate (CA4P)) Disodium SelleckChem Cat#S7204; CAS#168555-66-6 |
| T463 |
4654-4703 |
Sentence |
denotes |
Ganetespib SelleckChem Cat#S1159; CAS#888216-25-9 |
| T464 |
4704-4756 |
Sentence |
denotes |
Gilteritinib SelleckChem Cat#S7754; CAS#1254053-43-4 |
| T465 |
4757-4809 |
Sentence |
denotes |
Idarubicin HCl SelleckChem Cat#S1228; CAS#57852-57-0 |
| T466 |
4810-4861 |
Sentence |
denotes |
Ipatasertib SelleckChem Cat#S2808; CAS#1001264-89-6 |
| T467 |
4862-4922 |
Sentence |
denotes |
Ispinesib (SB-715992) SelleckChem Cat#S1452; CAS#336113-53-2 |
| T468 |
4923-4981 |
Sentence |
denotes |
Ixazomib (MLN2238) SelleckChem Cat#S2180; CAS#1072833-77-2 |
| T469 |
4982-5030 |
Sentence |
denotes |
K-252a Cayman Chemical Cat#11338; CAS#99533-80-9 |
| T470 |
5031-5081 |
Sentence |
denotes |
KenPaullone SelleckChem Cat#S7917; CAS#142273-20-9 |
| T471 |
5082-5129 |
Sentence |
denotes |
KW-2449 SelleckChem Cat#S2158; CAS#1000669-72-6 |
| T472 |
5130-5176 |
Sentence |
denotes |
LJI308 SelleckChem Cat#S7871; CAS#1627709-94-7 |
| T473 |
5177-5224 |
Sentence |
denotes |
LMK-235 SelleckChem Cat#S7569; CAS#1418033-25-6 |
| T474 |
5225-5283 |
Sentence |
denotes |
LY2584702 Tosylate SelleckChem Cat#S7704; CAS#1082949-68-5 |
| T475 |
5284-5331 |
Sentence |
denotes |
MBQ-167 SelleckChem Cat#S8749; CAS#2097938-73-1 |
| T476 |
5332-5378 |
Sentence |
denotes |
Mdivi-1 SelleckChem Cat#S7162; CAS#338967-87-6 |
| T477 |
5379-5429 |
Sentence |
denotes |
Midostaurin SelleckChem Cat#S8064; CAS#120685-11-2 |
| T478 |
5430-5482 |
Sentence |
denotes |
MK-2206 2HCl SelleckChem Cat#S1078; CAS#1032350-13-2 |
| T479 |
5483-5526 |
Sentence |
denotes |
ML141 SelleckChem Cat#S7686; CAS#71203-35-5 |
| T480 |
5527-5574 |
Sentence |
denotes |
NSC319276 SelleckChem Cat#S7149; CAS#71555-25-4 |
| T481 |
5575-5624 |
Sentence |
denotes |
NVP-BEP800 SelleckChem Cat#S1498; CAS#847559-80-2 |
| T482 |
5625-5692 |
Sentence |
denotes |
Palbociclib (PD-0332991) HCl SelleckChem Cat#S1116; CAS#827022-32-2 |
| T483 |
5693-5743 |
Sentence |
denotes |
PF-03814735 SelleckChem Cat#S2725; CAS#942487-16-3 |
| T484 |
5744-5793 |
Sentence |
denotes |
PF-3758309 SelleckChem Cat#S7094; CAS#898044-15-0 |
| T485 |
5794-5843 |
Sentence |
denotes |
PHA-793887 SelleckChem Cat#S1487; CAS#718630-59-2 |
| T486 |
5844-5893 |
Sentence |
denotes |
Pictilisib SelleckChem Cat#S1065; CAS#957054-30-7 |
| T487 |
5894-5950 |
Sentence |
denotes |
PKR Inhibitor Cayman Chemical Cat#15323; CAS#608512-97-6 |
| T488 |
5951-6003 |
Sentence |
denotes |
QNZ (EVP4593) SelleckChem Cat#S4902; CAS#545380-34-5 |
| T489 |
6004-6048 |
Sentence |
denotes |
R-406 SelleckChem Cat#S2194; CAS#841290-81-1 |
| T490 |
6049-6093 |
Sentence |
denotes |
R-547 SelleckChem Cat#S2688; CAS#741713-40-6 |
| T491 |
6094-6141 |
Sentence |
denotes |
Rapamycin SelleckChem Cat#S1039; CAS#53123-88-9 |
| T492 |
6142-6194 |
Sentence |
denotes |
Ravoxertinib SelleckChem Cat#S7554; CAS#1453848-26-4 |
| T493 |
6195-6243 |
Sentence |
denotes |
Remdesivir BioVision Cat#B2997; CAS#1809249-37-3 |
| T494 |
6244-6324 |
Sentence |
denotes |
Ripasudil (K-115) hydrochloride dihydrate SelleckChem Cat#S7995; CAS#887375-67-9 |
| T495 |
6325-6396 |
Sentence |
denotes |
Romidepsin (FK228, Depsipeptide) SelleckChem Cat#S3020; CAS#128517-07-7 |
| T496 |
6397-6463 |
Sentence |
denotes |
Ruboxistaurin HCl(LY333531) SelleckChem Cat#S7663; CAS#169939-93-9 |
| T497 |
6464-6516 |
Sentence |
denotes |
Sapanisertib SelleckChem Cat#S2811; CAS#1224844-38-5 |
| T498 |
6517-6570 |
Sentence |
denotes |
SAR-407899 Cayman Chemical Cat#21717; CAS#923359-38-0 |
| T499 |
6571-6622 |
Sentence |
denotes |
SB743921 HCl SelleckChem Cat#S2182; CAS#940929-33-9 |
| T500 |
6623-6681 |
Sentence |
denotes |
SGI-1776 free base SelleckChem Cat#S2198; CAS#1025065-69-3 |
| T501 |
6682-6735 |
Sentence |
denotes |
Silmitasertib SelleckChem Cat#S2248; CAS#1009820-21-6 |
| T502 |
6736-6793 |
Sentence |
denotes |
Sorafenib Tosylate SelleckChem Cat#S1040; CAS#475207-59-1 |
| T503 |
6794-6845 |
Sentence |
denotes |
Sotrastaurin SelleckChem Cat#S2791; CAS#425637-18-9 |
| T504 |
6846-6891 |
Sentence |
denotes |
Stattic SelleckChem Cat#S7024; CAS#19983-44-9 |
| T505 |
6892-6943 |
Sentence |
denotes |
Staurosporine SelleckChem Cat#S1421; CAS#62996-74-1 |
| T506 |
6944-7004 |
Sentence |
denotes |
Tanzisertib SelleckChem Cat#S8490; CAS#899805-25-5(freebase) |
| T507 |
7005-7055 |
Sentence |
denotes |
Tasquinimod SelleckChem Cat#S7617; CAS#254964-60-8 |
| T508 |
7056-7115 |
Sentence |
denotes |
THZ1 2HCl SelleckChem Cat#S7549; CAS#1604810-83-4(freebase) |
| T509 |
7116-7182 |
Sentence |
denotes |
Tpl2 Kinase Inhibitor 1 Cayman Chemical Cat#19710; CAS#871307-18-5 |
| T510 |
7183-7228 |
Sentence |
denotes |
U73122 SelleckChem Cat#S8011; CAS#112648-68-7 |
| T511 |
7229-7278 |
Sentence |
denotes |
Volasertib SelleckChem Cat#S2235; CAS#755038-65-4 |
| T512 |
7279-7337 |
Sentence |
denotes |
XL413 (BMS-863233) SelleckChem Cat#S7547; CAS#1169562-71-3 |
| T513 |
7338-7388 |
Sentence |
denotes |
Y-39983 HCl SelleckChem Cat#S7935; CAS#173897-44-4 |
| T514 |
7389-7440 |
Sentence |
denotes |
CCL2/MCP-1, Capture Antibody R&D Systems Cat#MAB679 |
| T515 |
7441-7493 |
Sentence |
denotes |
CCL5/RANTES, Capture Antibody R&D Systems Cat#MAB678 |
| T516 |
7494-7548 |
Sentence |
denotes |
CCL11/Eotaxin, Capture Antibody R&D Systems Cat#MAB320 |
| T517 |
7549-7596 |
Sentence |
denotes |
GM-CSF, Capture Antibody R&D Systems Cat#MAB615 |
| T518 |
7597-7644 |
Sentence |
denotes |
IL-1RA, Capture Antibody Peprotech Cat#500-P209 |
| T519 |
7645-7697 |
Sentence |
denotes |
CCL13/MCP-4, Capture Antibody R&D Systems Cat#MAB327 |
| T520 |
7698-7743 |
Sentence |
denotes |
IL-4, Capture Antibody R&D Systems Cat#MAB604 |
| T521 |
7744-7789 |
Sentence |
denotes |
IL-10, Capture Antibody Peprotech Cat#500-P20 |
| T522 |
7790-7836 |
Sentence |
denotes |
IL-15, Capture Antibody R&D Systems Cat#MAB647 |
| T523 |
7837-7886 |
Sentence |
denotes |
IL-1beta, Capture Antibody R&D Systems Cat#MAB601 |
| T524 |
7887-7937 |
Sentence |
denotes |
CCL8/MCP-2, Capture Antibody Peprotech Cat#500-P35 |
| T525 |
7938-7987 |
Sentence |
denotes |
CXCL9/MIG, Capture Antibody Peprotech Cat#500-P50 |
| T526 |
7988-8044 |
Sentence |
denotes |
CCL3/MIP-1alpha, Capture Antibody R&D Systems Cat#MAB670 |
| T527 |
8045-8100 |
Sentence |
denotes |
CXCL2/GRO-Beta, Capture Antibody Peprotech Cat#500-P104 |
| T528 |
8101-8151 |
Sentence |
denotes |
TGF-Beta1, Capture Antibody R&D Systems Cat#MAB240 |
| T529 |
8152-8199 |
Sentence |
denotes |
CXCL16, Capture Antibody Peprotech Cat#500-P200 |
| T530 |
8200-8251 |
Sentence |
denotes |
CXCL8/IL-8, Capture Antibody R&D Systems Cat#MAB208 |
| T531 |
8252-8298 |
Sentence |
denotes |
MMP-9, Capture Antibody R&D Systems Cat#MAB936 |
| T532 |
8299-8354 |
Sentence |
denotes |
CXCL1/GRO-alpha, Capture Antibody Peprotech Cat#500-P92 |
| T533 |
8355-8400 |
Sentence |
denotes |
IL-7, Capture Antibody R&D Systems Cat#MAB207 |
| T534 |
8401-8456 |
Sentence |
denotes |
CCL4/MIP-1beta, Capture Antibody R&D Systems Cat#MAB271 |
| T535 |
8457-8507 |
Sentence |
denotes |
IL-1alpha, Capture Antibody R&D Systems Cat#MAB200 |
| T536 |
8508-8561 |
Sentence |
denotes |
IL-12 (p70), Capture Antibody Peprotech Cat#500-P154G |
| T537 |
8562-8608 |
Sentence |
denotes |
IL-16, Capture Antibody R&D Systems Cat#MAB316 |
| T538 |
8609-8662 |
Sentence |
denotes |
CCL20/MIP-3a, Capture Antibody R&D Systems Cat#MAB360 |
| T539 |
8663-8713 |
Sentence |
denotes |
TNF-alpha, Capture Antibody R&D Systems Cat#MAB610 |
| T540 |
8714-8771 |
Sentence |
denotes |
Trappin-2/Elafin, Capture Antibody R&D Systems Cat#AF1747 |
| T541 |
8772-8819 |
Sentence |
denotes |
IL-17A, Capture Antibody R&D Systems Cat#MAB317 |
| T542 |
8820-8873 |
Sentence |
denotes |
CXCL10/IP-10, Capture Antibody R&D Systems Cat#MAB266 |
| T543 |
8874-8921 |
Sentence |
denotes |
S100A8, Capture Antibody R&D Systems Cat#DS8900 |
| T544 |
8922-8968 |
Sentence |
denotes |
IL-22, Capture Antibody Peprotech Cat#500-P211 |
| T545 |
8969-9022 |
Sentence |
denotes |
CXCL5/ENA-78, Capture Antibody R&D Systems Cat#MAB654 |
| T546 |
9023-9068 |
Sentence |
denotes |
IL-6, Capture Antibody R&D Systems Cat#MAB206 |
| T547 |
9069-9120 |
Sentence |
denotes |
CCL7/MCP-3, Capture Antibody R&D Systems Cat#MAB282 |
| T548 |
9121-9167 |
Sentence |
denotes |
CCL2/MCP-1, Protein std R&D Systems Cat#279-MC |
| T549 |
9168-9215 |
Sentence |
denotes |
CCL5/RANTES, Protein std R&D Systems Cat#278-RN |
| T550 |
9216-9263 |
Sentence |
denotes |
CCL11/Eotaxin, Protein std Peprotech Cat#300-21 |
| T551 |
9264-9306 |
Sentence |
denotes |
GM-CSF, Protein std R&D Systems Cat#215-GM |
| T552 |
9307-9349 |
Sentence |
denotes |
IL-1RA, Protein std Peprotech Cat#200-01RA |
| T553 |
9350-9397 |
Sentence |
denotes |
CCL13/MCP-4, Protein std R&D Systems Cat#327-P4 |
| T554 |
9398-9438 |
Sentence |
denotes |
IL-4, Protein std R&D Systems Cat#204-IL |
| T555 |
9439-9478 |
Sentence |
denotes |
IL-10, Protein std Peprotech Cat#200-10 |
| T556 |
9479-9521 |
Sentence |
denotes |
IL-15, Protein std R&D Systems Cat#247-ILB |
| T557 |
9522-9566 |
Sentence |
denotes |
IL-1beta, Protein std R&D Systems Cat#201-LB |
| T558 |
9567-9611 |
Sentence |
denotes |
CCL8/MCP-2, Protein std Peprotech Cat#300-15 |
| T559 |
9612-9657 |
Sentence |
denotes |
CXCL9/MIG, Protein std R&D Systems Cat#392-MG |
| T560 |
9658-9709 |
Sentence |
denotes |
CCL3/MIP-1alpha, Protein std R&D Systems Cat#270-LD |
| T561 |
9710-9758 |
Sentence |
denotes |
CXCL2/GRO-Beta, Protein std Peprotech Cat#300-39 |
| T562 |
9759-9802 |
Sentence |
denotes |
TGF-Beta1, Protein std Peprotech Cat#100-21 |
| T563 |
9803-9843 |
Sentence |
denotes |
CXCL16, Protein std Peprotech Cat#300-55 |
| T564 |
9844-9890 |
Sentence |
denotes |
CXCL8/IL-8, Protein std R&D Systems Cat#208-IL |
| T565 |
9891-9932 |
Sentence |
denotes |
MMP-9, Protein std R&D Systems Cat#911-MP |
| T566 |
9933-9982 |
Sentence |
denotes |
CXCL1/GRO-alpha, Protein std Peprotech Cat#300-11 |
| T567 |
9983-10023 |
Sentence |
denotes |
IL-7, Protein std R&D Systems Cat#207-IL |
| T568 |
10024-10075 |
Sentence |
denotes |
CCL4/MIP-1beta, Protein std R&D Systems Cat#271-BME |
| T569 |
10076-10120 |
Sentence |
denotes |
IL-1alpha, Protein std Peprotech Cat#200-01A |
| T570 |
10121-10167 |
Sentence |
denotes |
IL-12(p70), Protein std R&D Systems Cat#219-IL |
| T571 |
10168-10207 |
Sentence |
denotes |
IL-16, Protein std Peprotech Cat#200-16 |
| T572 |
10208-10255 |
Sentence |
denotes |
CCL20/MIP-3a, Protein std Peprotech Cat#300-29A |
| T573 |
10256-10301 |
Sentence |
denotes |
TNF-alpha, Protein std R&D Systems Cat#210-TA |
| T574 |
10302-10355 |
Sentence |
denotes |
Trappin-2/Elafin, Protein std R&D Systems Cat#1747-PI |
| T575 |
10356-10396 |
Sentence |
denotes |
IL-17A, Protein std Peprotech Cat#200-17 |
| T576 |
10397-10445 |
Sentence |
denotes |
CXCL10/IP-10, Protein std R&D Systems Cat#266-IP |
| T577 |
10446-10488 |
Sentence |
denotes |
S100A8, Protein std R&D Systems Cat#DS8900 |
| T578 |
10489-10528 |
Sentence |
denotes |
IL-22, Protein std Peprotech Cat#200-22 |
| T579 |
10529-10577 |
Sentence |
denotes |
CXCL5/ENA-78, Protein std R&D Systems Cat#254-XB |
| T580 |
10578-10618 |
Sentence |
denotes |
IL-6, Protein std R&D Systems Cat#206-IL |
| T581 |
10619-10665 |
Sentence |
denotes |
CCL7/MCP-3, Protein std R&D Systems Cat#282-P3 |
| T582 |
10666-10719 |
Sentence |
denotes |
CCL2/MCP-1, Detection Antibody R&D Systems Cat#BAF279 |
| T583 |
10720-10774 |
Sentence |
denotes |
CCL5/RANTES, Detection Antibody R&D Systems Cat#BAF278 |
| T584 |
10775-10831 |
Sentence |
denotes |
CCL11/Eotaxin, Detection Antibody R&D Systems Cat#BAF320 |
| T585 |
10832-10882 |
Sentence |
denotes |
GM-CSF, Detection Antibody R&D Systems Cat#BAM 215 |
| T586 |
10883-10934 |
Sentence |
denotes |
IL-1RA, Detection Antibody Peprotech Cat#500-P209BT |
| T587 |
10935-10989 |
Sentence |
denotes |
CCL13/MCP-4, Detection Antibody R&D Systems Cat#BAF327 |
| T588 |
10990-11037 |
Sentence |
denotes |
IL-4, Detection Antibody R&D Systems Cat#BAF204 |
| T589 |
11038-11087 |
Sentence |
denotes |
IL-10, Detection Antibody Peprotech Cat#500-P20BT |
| T590 |
11088-11137 |
Sentence |
denotes |
IL-15, Detection Antibody R&D Systems Cat#BAM 247 |
| T591 |
11138-11189 |
Sentence |
denotes |
IL-1beta, Detection Antibody R&D Systems Cat#BAF201 |
| T592 |
11190-11244 |
Sentence |
denotes |
CCL8/MCP-2, Detection Antibody Peprotech Cat#500-P35BT |
| T593 |
11245-11298 |
Sentence |
denotes |
CXCL9/MIG, Detection Antibody Peprotech Cat#500-P50BT |
| T594 |
11299-11357 |
Sentence |
denotes |
CCL3/MIP-1alpha, Detection Antibody R&D Systems Cat#BAF270 |
| T595 |
11358-11416 |
Sentence |
denotes |
CXCL2/GRO-Beta, Detection Antibody Peprotech Cat#500P104BT |
| T596 |
11417-11471 |
Sentence |
denotes |
TGF-Beta1, Detection Antibody R&D Systems Cat#BAM 2462 |
| T597 |
11472-11523 |
Sentence |
denotes |
CXCL16, Detection Antibody Peprotech Cat#500-P200BT |
| T598 |
11524-11577 |
Sentence |
denotes |
CXCL8/IL-8, Detection Antibody R&D Systems Cat#BAF208 |
| T599 |
11578-11626 |
Sentence |
denotes |
MMP-9, Detection Antibody R&D Systems Cat#BAF911 |
| T600 |
11627-11685 |
Sentence |
denotes |
CXCL1/GRO-alpha, Detection Antibody Peprotech Cat#500P92BT |
| T601 |
11686-11733 |
Sentence |
denotes |
IL-7, Detection Antibody R&D Systems Cat#BAF207 |
| T602 |
11734-11791 |
Sentence |
denotes |
CCL4/MIP-1beta, Detection Antibody R&D Systems Cat#BAF271 |
| T603 |
11792-11844 |
Sentence |
denotes |
IL-1alpha, Detection Antibody R&D Systems Cat#BAF200 |
| T604 |
11845-11901 |
Sentence |
denotes |
IL-12(p70), Detection Antibody Peprotech Cat#500-P154GBT |
| T605 |
11902-11950 |
Sentence |
denotes |
IL-16, Detection Antibody R&D Systems Cat#BAF316 |
| T606 |
11951-12006 |
Sentence |
denotes |
CCL20/MIP-3a, Detection Antibody R&D Systems Cat#BAF360 |
| T607 |
12007-12059 |
Sentence |
denotes |
TNF-alpha, Detection Antibody R&D Systems Cat#BAF210 |
| T608 |
12060-12120 |
Sentence |
denotes |
Trappin-2/Elafin, Detection Antibody R&D Systems Cat#BAF1747 |
| T609 |
12121-12170 |
Sentence |
denotes |
IL-17A, Detection Antibody R&D Systems Cat#BAF317 |
| T610 |
12171-12227 |
Sentence |
denotes |
CXCL10/IP-10, Detection Antibody Peprotech Cat#500-P93BT |
| T611 |
12228-12277 |
Sentence |
denotes |
S100A8, Detection Antibody R&D Systems Cat#DS8900 |
| T612 |
12278-12328 |
Sentence |
denotes |
IL-22, Detection Antibody Peprotech Cat#500-P211BT |
| T613 |
12329-12384 |
Sentence |
denotes |
CXCL5/ENA-78, Detection Antibody R&D Systems Cat#BAF254 |
| T614 |
12385-12432 |
Sentence |
denotes |
IL-6, Detection Antibody R&D Systems Cat#BAF206 |
| T615 |
12433-12486 |
Sentence |
denotes |
CCL7/MCP-3, Detection Antibody R&D Systems Cat#BAF282 |
| T616 |
12487-12513 |
Sentence |
denotes |
Critical Commercial Assays |
| T617 |
12514-12545 |
Sentence |
denotes |
MTT assay Roche Cat#11465007001 |
| T618 |
12546-12612 |
Sentence |
denotes |
Luna Universal One-Step RT-qPCR Kit New England Biolabs Cat#E3005L |
| T619 |
12613-12677 |
Sentence |
denotes |
CellTiter-Glo Luminescent Cell Viability Assay Promega Cat#G7570 |
| T620 |
12678-12734 |
Sentence |
denotes |
Direct-zol RNA Miniprep Plus kit Zymo Research Cat#R2072 |
| T621 |
12735-12787 |
Sentence |
denotes |
KAPA SYBR FAST qPCR Master Mix Roche Cat#07959389001 |
| T622 |
12788-12836 |
Sentence |
denotes |
Bio-Rad II Protein Assay Kit Bio-Rad Cat#5000002 |
| T623 |
12837-12851 |
Sentence |
denotes |
Deposited Data |
| T624 |
12852-12950 |
Sentence |
denotes |
Phosphoproteomics data of SARS-CoV-2 infected Vero E6 cells This paper PRIDE Project ID: PXD019113 |
| T625 |
12951-13039 |
Sentence |
denotes |
Supplemental Tables in Mendeley Data This paper https://dx.doi.org/10.17632/dpkbh2g9hy.1 |
| T626 |
13040-13112 |
Sentence |
denotes |
CORUM v3.0 Giurgiu et al., 2019 http://mips.helmholtz-muenchen.de/corum/ |
| T627 |
13113-13199 |
Sentence |
denotes |
RNA-seq dataset for transcription factor activities Blanco-Melo et al., 2020 GSE147507 |
| T628 |
13200-13327 |
Sentence |
denotes |
Phosphoproteomics datasets of biological conditions Ochoa et al., 2016 https://www.embopress.org/doi/full/10.15252/msb.20167295 |
| T629 |
13328-13534 |
Sentence |
denotes |
Functional scores for phosphorylation sites Ochoa et al., 2020 https://idp.nature.com/authorize?response_type=cookie&client_id=grover&redirect_uri=https%3A%2F%2Fwww.nature.com%2Farticles%2Fs41587-019-0344-3 |
| T630 |
13535-13664 |
Sentence |
denotes |
Gene identifier mapping database from BioMart Ensembl http://uswest.ensembl.org/biomart/martview/5ccd994c794265409f21c6194730ce5b |
| T631 |
13665-13802 |
Sentence |
denotes |
Molecular Signatures Database for gene set enrichment analysis Subramanian et al., 2005 https://www.gsea-msigdb.org/gsea/msigdb/index.jsp |
| T632 |
13803-13908 |
Sentence |
denotes |
Kinase-substrate relationships Bachman et al., 2019 https://www.biorxiv.org/content/10.1101/822668v3.full |
| T633 |
13909-14014 |
Sentence |
denotes |
Chlorocebus proteome sequences for peptide searches Uniprot https://www.uniprot.org/proteomes/UP000029965 |
| T634 |
14015-14112 |
Sentence |
denotes |
Sars-CoV-2 genomic sequences (hCoV-19/France/IDF0372/2020) GISAID Accession number EPI_ISL_406596 |
| T635 |
14113-14133 |
Sentence |
denotes |
Experimental Models: |
| T636 |
14134-14144 |
Sentence |
denotes |
Cell Lines |
| T637 |
14145-14225 |
Sentence |
denotes |
ACE2-A549 human lung carcinoma Donated from the laboratory of Brad Rosenberg N/A |
| T638 |
14226-14248 |
Sentence |
denotes |
Caco-2 ATCC Cat#HTB-37 |
| T639 |
14249-14316 |
Sentence |
denotes |
VERO C1008 [Vero 76, clone E6, Vero E6] (Vero E6) ATCC Cat#CRL-1586 |
| T640 |
14317-14352 |
Sentence |
denotes |
HEK293T/17 cells ATCC Cat#CRL-11268 |
| T641 |
14353-14369 |
Sentence |
denotes |
Oligonucleotides |
| T642 |
14370-14478 |
Sentence |
denotes |
ON-TARGETplus Human MAPK12 (6300) siRNA - SMARTpool, 5 nmol Horizon Discovery/Dharmacon Cat#L-003590-00-0005 |
| T643 |
14479-14587 |
Sentence |
denotes |
ON-TARGETplus Human MAPK13 (5603) siRNA - SMARTpool, 5 nmol Horizon Discovery/Dharmacon Cat#L-003591-00-0005 |
| T644 |
14588-14696 |
Sentence |
denotes |
ON-TARGETplus Human MAP2K3 (5606) siRNA - SMARTpool, 5 nmol Horizon Discovery/Dharmacon Cat#L-003509-00-0005 |
| T645 |
14697-14796 |
Sentence |
denotes |
ON-TARGETplus Human ACE2 (59272) siRNA - SMARTpool Horizon Discovery/Dharmacon Cat#L-005755-00-0005 |
| T646 |
14797-14859 |
Sentence |
denotes |
N gene region (reverse) 5′-CGAAGGTGTGACTTCCATG-3′ Eurofins N/A |
| T647 |
14860-14924 |
Sentence |
denotes |
N gene region (forward)5′-TAATCAGACAAGGAACTGATTA-3′ Eurofins N/A |
| T648 |
14925-14940 |
Sentence |
denotes |
Recombinant DNA |
| T649 |
14941-14988 |
Sentence |
denotes |
pLVX-TetOne-Puro empty vector Takara Cat#631847 |
| T650 |
14989-15041 |
Sentence |
denotes |
pLVX-TetOne-Puro-SARS-CoV-2-N-2xStrep This paper N/A |
| T651 |
15042-15103 |
Sentence |
denotes |
pMD2.G, Addgene Gift from Didier Trono Addgene Plasmid #12259 |
| T652 |
15104-15171 |
Sentence |
denotes |
Gag-Pol-Tat-Rev packaging construct Gift from Judd Hultquist pJH045 |
| T653 |
15172-15195 |
Sentence |
denotes |
Software and Algorithms |
| T654 |
15196-15281 |
Sentence |
denotes |
artMS Bioconductor https://www.bioconductor.org/packages/release/bioc/html/artMS.html |
| T655 |
15282-15369 |
Sentence |
denotes |
MSstats Bioconductor https://www.bioconductor.org/packages/release/bioc/html/artMS.html |
| T656 |
15370-15463 |
Sentence |
denotes |
The R Project for Statistical Computing R Core Team, 2019 http://www.r-project.org/index.html |
| T657 |
15464-15524 |
Sentence |
denotes |
Spectronaut Biognosys https://biognosys.com/shop/spectronaut |
| T658 |
15525-15591 |
Sentence |
denotes |
ZEN (Blue edition) Carl Zeiss Microscopy https://www.zeiss.com/zen |
| T659 |
15592-15653 |
Sentence |
denotes |
SPPIDER v2 Porollo and Meller, 2007 http://sppider.cchmc.org/ |
| T660 |
15654-15725 |
Sentence |
denotes |
DoRothEA Garcia-Alonso et al., 2019 https://saezlab.github.io/dorothea/ |
| T661 |
15726-15819 |
Sentence |
denotes |
VIPER Alvarez et al., 2016 https://www.bioconductor.org/packages/release/bioc/html/viper.html |
| T662 |
15820-15911 |
Sentence |
denotes |
Biostrings Bioconductor https://bioconductor.org/packages/release/bioc/html/Biostrings.html |
| T663 |
15912-16013 |
Sentence |
denotes |
clusterProfiler Bioconductor https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html |
| T664 |
16014-16109 |
Sentence |
denotes |
DESeq2 package Love et al., 2014 http://bioconductor.org/packages/release/bioc/html/DESeq2.html |
| T665 |
16110-16172 |
Sentence |
denotes |
Imaris 64x 9.5.1 Oxford Instruments https://imaris.oxinst.com/ |
| T666 |
16173-16248 |
Sentence |
denotes |
MetaMorph (Version 7.8) Molecular Devices https://www.moleculardevices.com/ |
| T667 |
16249-16254 |
Sentence |
denotes |
Other |
| T668 |
16255-16351 |
Sentence |
denotes |
Orbitrap Exploris 480 MS with internal calibration option Thermo Fisher Scientific Cat#BRE725533 |
| T669 |
16352-16442 |
Sentence |
denotes |
ZEISS LSM 800 Confocal Laser Scanning Microscope Carl Zeiss Microscopy Model#ZEISS LSM 800 |
| T670 |
16443-16508 |
Sentence |
denotes |
QuantStudio 6 Real-Time PCR System Applied Biosystems Cat#4485697 |
| T671 |
16509-16541 |
Sentence |
denotes |
FACSymphony BD Life Sciences N/A |
| T672 |
16542-16578 |
Sentence |
denotes |
Infinity 2000 Plate Reader Tecan N/A |
| T673 |
16579-16619 |
Sentence |
denotes |
Luminex MAGPIX platform Luminex Corp N/A |
| T674 |
16620-16659 |
Sentence |
denotes |
LightCycler 480 Instrument II Roche N/A |
| T675 |
16660-16708 |
Sentence |
denotes |
Bal-Tec Drier Balzers, Liechtenstein Cat#CPD 030 |
| T676 |
16709-16787 |
Sentence |
denotes |
Quorum sputter coater Electron Microscopy Sciences, Hatfield, PA Cat#EMS300T D |
| T677 |
16788-16875 |
Sentence |
denotes |
Hitachi field emission scanning electron microscope Hitachi, Tokyo, Japan Model#SU-8000 |
| T678 |
16876-16923 |
Sentence |
denotes |
Leica UC7 ultramicrotome Leica Microsystems N/A |
| T679 |
16924-16991 |
Sentence |
denotes |
FEI BT Tecnai transmission electron microscope Thermofisher/FEI N/A |
| T680 |
16992-17018 |
Sentence |
denotes |
Gatan Rio camera Gatan N/A |
| T681 |
17019-17057 |
Sentence |
denotes |
Celigo imaging cytometer Nexcelcom N/A |
