LitCovid-sentences  

PMC:7281378 / 114177-116936 JSONTXT 9 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T851 0-126 Sentence denotes Table 2 An overview of swine sample types and methods used for detection of influenza viruses in swine populations worldwide.
T852 127-129 Sentence denotes S.
T853 130-133 Sentence denotes No.
T854 135-240 Sentence denotes Swine Sample Types Methods Used for Influenza Virus Detection Virus Types/Subtypes Detected References
T855 241-243 Sentence denotes 1.
T856 245-832 Sentence denotes Nasal swab RNA extraction, real-time RT-PCR, reverse transcription PCR, multiplex RT-PCR, ligation, partial/whole genome Sanger sequencing, Next-generation sequencing, phylogenetic analysis, virus isolation (MDCK cells/Caco-2 cells/HRT18 cells/SPF chicken eggs), transmission electron microscopy, HI assay, NI assay, ultracentrifugation H1N1, H1N2,H3N2, H4N6, A(H1N1)pdm09, Reassortant H1N1, Reassortant A(H1N1)pdm09, Triple-reassortant H3N2, H1N7, H5N2, IBV, IDV [5,37,43,45,46,61,74,88,137,157,171,176,188,191,199,207,215,219,220,221,241,243,248,250,263,289,290,301,306,307,326,334]
T857 833-835 Sentence denotes 2.
T858 837-1036 Sentence denotes Tracheal swab RNA extraction, real-time RT-PCR, reverse transcription PCR, Sanger sequencing, virus isolation (MDCK cells, SPF chicken eggs) H5N1, IAV, ICV, H1N1, A(H1N1)pdm09, [38,59,103,321,331]
T859 1037-1039 Sentence denotes 3.
T860 1041-1082 Sentence denotes Nasal wipe Real-time RT-PCR H3N2 [289]
T861 1083-1085 Sentence denotes 4.
T862 1087-1160 Sentence denotes Snout wipe RNA extraction, real-time RT-PCR, virus isolation IAV [286]
T863 1161-1163 Sentence denotes 5.
T864 1165-1266 Sentence denotes Oropharyngeal swab RNA extraction, real-time RT-PCR, Sanger sequencing IAV, A(H1N1)pdm09 [211,276]
T865 1267-1269 Sentence denotes 6.
T866 1271-1427 Sentence denotes Nasopharyngeal swab RNA extraction, real-time RT-PCR, virus isolation (SPF chicken eggs), Sanger sequencing H3N2, A(H1N1)pdm09, IBV, ICV [38,141,211,277]
T867 1428-1430 Sentence denotes 7.
T868 1432-1624 Sentence denotes Oral fluid RNA extraction, real-time RT-PCR, virus isolation, Sanger sequencing, Next-generation sequencing (MiSeq) IAV, IDV, H1N1, H1N2, H3N2, A(H1N1)pdm09 [45,192,227,282,285,287,302,322]
T869 1625-1627 Sentence denotes 8.
T870 1629-1920 Sentence denotes Blood/ serum IDEXX Ab test, ELISA, HI assay, NI assay, VN assay, MN assay, western blot, virus isolation (MDCK cells) H1N1, H1N2, H3N2, A(H1N1)pdm09, H5N1, H5N2, H5N3, H9N2, H7N9, H3N1, H4N8, H6N6, H6N2, H7N2, IBV, ICV, IDV [37,38,46,52,59,70,79,96,97,135,138,153,186,195,200,215,291,306]
T871 1921-1923 Sentence denotes 9.
T872 1925-2324 Sentence denotes Lung/liver/internal organ tissues RNA extraction, real-time RT-PCR, reverse transcription-PCR, ligation, HI assay, virus isolation (MDCK cells/SPF chicken eggs), Sanger and Next-generation sequencing, hematoxylin-eosin staining, immunohistochemistry, Immunofluorescence H1N1, H1N2, Reassortant H1N1, H3N2, H2N3, A(H1N1)pdm09, H7N2, IDV [45,121,127,128,130,201,203,243,245,248,274,314,320,325,327]
T873 2325-2328 Sentence denotes 10.
T874 2330-2604 Sentence denotes Lung homogenate RNA extraction, real-time RT-PCR, multiplex RT-PCR, single step RT-PCR, virus isolation (MDCK cells/Caco-2 cells/SPF chicken eggs), Sanger sequencing, membrane enzyme immunoassay, HI assay H1N1, H1N2, H3N2, Reassortant H1N2, A(H1N1)pdm09 [130,213,218,292]
T875 2605-2608 Sentence denotes 11.
T876 2610-2658 Sentence denotes Fecal slurry RNA extraction, qRT-PCR IAV [88]
T877 2659-2662 Sentence denotes 12.
T878 2664-2759 Sentence denotes Rectal swab Nucleic acid extraction, reverse transcription, metagenomic sequencing IAV [300]