LitCovid-sentences  

PMC:7189872 / 9494-11768 JSONTXT 8 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T74 0-51 Sentence denotes 3.1 T-cell epitopes prediction and VaxiJen scoring
T75 52-337 Sentence denotes Non-allergen proteins selected (Table 1) based on allergenicity scores (by deploying AllergenFP 1.0) New to NetMHCII PAN 3.2 and NETMHC 4.0 servers for determining 1-log50k value and affinity values for selecting the best possible pair of epitopes with their corresponding HLA alleles.
T76 338-527 Sentence denotes In Table 2 and Table 3 , results for MHC Class I HLA and MHC Class II HLA alleles paired epitopes along with their VaxiJen scores were represented respectively, to obtain putative epitopes.
T77 528-572 Sentence denotes The results are self-explanatory in Fig. 2 .
T78 573-734 Sentence denotes Graphical representation of selected peptides for docking are based on their interaction with MHC Class I and Class II HLA alleles along with their antigenicity.
T79 735-959 Sentence denotes Table 2 Probable antigenic epitopes and MHC I Allele interaction based on NETMHC 4.0 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T80 960-1054 Sentence denotes NCBI-GenBank ID MHC I Allele POS Core peptide 1-LOG50K Affinity(nM) Vaxijen score Antigenicity
T81 1055-1114 Sentence denotes QHD43417.1 HLA-A*68:01 7 FTIGTVTLK 0.853 4.9 2.0317 ANTIGEN
T82 1115-1166 Sentence denotes HLA-A*31:01 125 RLWLCWKCR 0.74 16.59 1.1604 ANTIGEN
T83 1167-1204 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T84 1205-1266 Sentence denotes QHD43419.1 HLA-A*11:01 5 GTITVEELK 0.719 20.98 1.0976 ANTIGEN
T85 1267-1329 Sentence denotes QHD43421.1 HLA-A*11:01 109 ITLCFTLKR 0.71 22.97 2.0208 ANTIGEN
T86 1330-1382 Sentence denotes HLA-A*68:01 109 ITLCFTLKR 0.695 27.24 2.0208 ANTIGEN
T87 1383-1435 Sentence denotes HLA-A*23:01 107 VFITLCFTL 0.621 60.42 1.2490 ANTIGEN
T88 1436-1473 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T89 1474-1707 Sentence denotes Table 3 Probable antigenic epitopes and MHC II Allele interaction based on NETMHC II PRED 3.2 server and VaxiJen 2.0 scores (≥1.0) for antigenicity prediction. (* - sign is used for no interaction any HLA Allele under consideration).
T90 1708-1804 Sentence denotes NCBI-GenBank ID MHC II Allele POS Core peptide 1- LOG50K Affinity(nM) Vaxijen score Antigenicity
T91 1805-1842 Sentence denotes QHD43417.1 – – – – – – NO INTERACTION
T92 1843-1880 Sentence denotes QHD43418.1 – – – – – – NO INTERACTION
T93 1881-1947 Sentence denotes QHD43419.1 HLA-DRB1*04:01 55 WLLWPVTA 0.282 2375.78 1.0631 ANTIGEN
T94 1948-2014 Sentence denotes QHD43421.1 HLA-DRB1*01:01 74 VYQLRARSV 0.484 267.05 1.3108 ANTIGEN
T95 2015-2071 Sentence denotes HLA-DRB1*07:01 74 VYQLRARSV 0.342 1235.08 1.3108 ANTIGEN
T96 2072-2109 Sentence denotes QHD43423.2 – – – – – – NO INTERACTION
T97 2110-2274 Sentence denotes Fig. 2 Graphical representation of selected peptides for docking based on their interaction with MHC Class I and Class II HLA alleles along with their Antigenicity.