| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T134 |
0-47 |
Sentence |
denotes |
3.4 Molecular dynamics and simulation analysis |
| T135 |
48-237 |
Sentence |
denotes |
RMSD values and Atomic fluctuation per amino acid residue were obtained for Epitopes interacting with the HLA-Allele structure; this analysis allows a perfect pair selection and validation. |
| T136 |
238-381 |
Sentence |
denotes |
Moreover, only two Epitope pairs, i.e., ITLCFTLKR and VYQLRARSV, were identified as probable T-cell epitopes and as putative vaccine specimens. |
| T137 |
382-575 |
Sentence |
denotes |
Fig. 7 shows the RMSD Plot and Atomic fluctuation per residue for the ITLCFTLKR- HLA-A*68:01 complex, the RMSD Plot and Atomic fluctuation per residue for the VYQLRARSV- HLA-DRB1*07:01 complex. |
| T138 |
576-728 |
Sentence |
denotes |
Both results were positive as best interactions, for protein-ligand docked complexes must possess RMSD values from 0 to 1.0 Å as a preferred range [13]. |
| T139 |
729-738 |
Sentence |
denotes |
Fig. 7 A. |
| T140 |
739-847 |
Sentence |
denotes |
RMSD Plot for ITLCFTLKR- HLA-A*68:01 complex, for each amino acid residue by Molecular dynamics analysis, B. |
| T141 |
848-961 |
Sentence |
denotes |
B-Factor (atomic fluctuation) values per amino acid residue for Epitope ITLCFTLKR- HLA-A*68:01 docked complex, C. |
| T142 |
962-1065 |
Sentence |
denotes |
RMSD Plot for VYQLRARSV- HLA-DRB1*07:01, for each amino acid residue by Molecular dynamics analysis, D. |
| T143 |
1066-1179 |
Sentence |
denotes |
B-Factor (atomic fluctuation) values per amino acid residue for Epitope VYQLRARSV- HLA-DRB1*07:01 docked complex. |
