| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T204 |
0-30 |
Sentence |
denotes |
Sequence similarity comparison |
| T205 |
31-252 |
Sentence |
denotes |
The sequence similarity between 2019-nCoV open reading frames and previously characterized immunogenic peptides in IEDB was analysed by local alignment using R ‘pairwiseAlignment’ function from Biostrings v2.40.2 package. |
| T206 |
253-337 |
Sentence |
denotes |
The local alignment utilized BLOSUM62 matrix, gapOpening of 5 and gapExtension of 5. |
| T207 |
338-402 |
Sentence |
denotes |
The alignment score was normalized by length of target peptides. |
| T208 |
403-562 |
Sentence |
denotes |
In extracting peptides with the exact sequence alignment with epitope sequences in IEDB, only peptides with more than 3 amino acids in length were shortlisted. |
