LitCovid-sentences  

PMC:7096774 / 1502-4812 JSONTXT 14 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T14 0-61 Sentence denotes Clinical presentation and laboratory confirmation of the case
T15 62-208 Sentence denotes The first COVID-19 case in Finland was a female Chinese tourist in her 30s, who had left Wuhan on 22 January and arrived in Finland on 23 January.
T16 209-285 Sentence denotes Her first symptoms were a runny nose on 26 January and nausea on 27 January.
T17 286-379 Sentence denotes Because of high fever (39 °C), weakness and cough she sought medical attention on 28 January.
T18 380-594 Sentence denotes Suspicion of COVID-19 led to her direct transfer to the Lapland Central Hospital in Rovaniemi, where she was isolated and sampled on 28 and 29 January for laboratory confirmation of SARS-CoV-2 infection (Figure 1).
T19 595-813 Sentence denotes SARS-CoV-2 infection was confirmed from nasopharyngeal samples on 29 January by the Helsinki University Hospital Laboratory (HUSLAB), and further confirmed at the Finnish Institute for Health and Welfare (THL) (Table).
T20 814-969 Sentence denotes Both laboratories performed real-time RT-PCR testing for three targets: the envelope (E), the RNA-dependent RNA polymerase (RdRp) and the nucleocapsid (N).
T21 970-1032 Sentence denotes Primers and probes were based on the Corman et al. method [2].
T22 1033-1095 Sentence denotes Cycle threshold (Ct) values above 37 were considered negative.
T23 1096-1198 Sentence denotes Figure 1 Timeline of events around the first COVID-19 case imported to Finland, January–February 2020
T24 1199-1229 Sentence denotes COVID-19: coronavirus disease.
T25 1230-1326 Sentence denotes Table Laboratory data of the first case of SARS-CoV-2 infection, Finland, January–February 2020
T26 1327-1417 Sentence denotes Sampling day Day since the first symptoms Specimen PCR done at E RdRp N MN IgM IgG
T27 1418-1487 Sentence denotes 28 Jan 2020Day 3 NPS HUSTHL ND30.49 ND30.48 ND31.59 NA NA NA
T28 1488-1568 Sentence denotes 29 Jan 2020Day 4 NPA HUSTHL 31.1827.13 27.56 28.43 28.2928.73 NA NA NA
T29 1569-1630 Sentence denotes NPS HUSTHL 28.1529.59 27.1330.87 28.8231.78 NA NA NA
T30 1631-1685 Sentence denotes Serum THLUH NegNeg NegNeg NegNeg < 4 < 20 < 20
T31 1686-1751 Sentence denotes 03 Feb 2020Day 9 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T32 1752-1787 Sentence denotes Serum UH ND Neg Neg 60 80 80
T33 1788-1854 Sentence denotes 04 Feb 2020Day 10 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T34 1855-1890 Sentence denotes Serum ND ND ND ND 72 160 160
T35 1891-1951 Sentence denotes 14 Feb 2020Day 20 Serum UH Neg Neg Neg 160 320 1,280
T36 1952-2018 Sentence denotes 17 Feb 2020Day 23 NPS HUSTHL NegNeg NegNeg NegNeg NA NA NA
T37 2019-2049 Sentence denotes E: envelope protein gene; HUS:
T38 2050-2382 Sentence denotes Helsinki University Hospital Laboratory; IgG: immunoglobulin G; IgM: immunoglobulin M; MN: microneutralisation test; N: nucleocapsid protein gene; NA: not applicable; ND: not done; Neg: negative; NPA: nasopharyngeal aspirate; NPS: nasopharyngeal swab; RdRp: RNA-dependent RNA polymerase gene; RT-PCR: reverse-transcription PCR; THL:
T39 2383-2428 Sentence denotes Finnish Institute for Health and Welfare; UH:
T40 2429-2452 Sentence denotes University of Helsinki.
T41 2453-2512 Sentence denotes The case had mild symptoms throughout the isolation period.
T42 2513-2641 Sentence denotes She was tested PCR-negative in 3 and 4 February samples and, as considered asymptomatic, discharged from hospital on 5 February.
T43 2642-2731 Sentence denotes One additional sample for serology and PCR was taken on 14 and 17 February, respectively.
T44 2732-2803 Sentence denotes Altogether 21 close contacts were identified of whom we could reach 17.
T45 2804-2872 Sentence denotes Fourteen were still in Finland and placed in quarantine for 14 days.
T46 2873-3014 Sentence denotes Information about three close contacts that had left the country was communicated to the competent authorities in their respective countries.
T47 3015-3080 Sentence denotes For the remaining four close contacts, we had no contact details.
T48 3081-3224 Sentence denotes Two of the 21 close contacts were closely co-exposed and therefore sampled on Days 4, 10, 12 and 14 after the first symptoms of the index case.
T49 3225-3310 Sentence denotes Follow-up of all contacts ended on 11 February without secondary transmission events.