| Id |
Subject |
Object |
Predicate |
Lexical cue |
| T470 |
0-127 |
Sentence |
denotes |
Raw glycoproteomic data from the mass spectrometers was searched using Proteome Discoverer v1.4 (SEQUEST), Protein Metrics Inc. |
| T471 |
128-162 |
Sentence |
denotes |
Byonic v3.8.13, and pGlyco v2.2.2. |
| T472 |
163-295 |
Sentence |
denotes |
For data searches using Proteome Discoverer, the results were processed to apply false discovery rate filtering using ProteoIQ v2.7. |
| T473 |
296-468 |
Sentence |
denotes |
For the deglycosylated protein work, search results from SEQUEST were filtered in ProteoIQ with a 1% false discovery rate at the protein level and 10% at the peptide level. |
| T474 |
469-602 |
Sentence |
denotes |
For N-linked glycopeptide analysis, pGlyco was used with false discovery rate of 1% at the glycan level and 10% at the peptide level. |
| T475 |
603-719 |
Sentence |
denotes |
For disulfide bond analysis and O-glycopeptide searches, Byonic was used and the false discovery rate was set to 1%. |
| T476 |
720-772 |
Sentence |
denotes |
All mass spectrometry results were manually curated. |
