PMC:7443692 / 44729-47526 JSONTXT 9 Projects

Annnotations TAB TSV DIC JSON TextAE

Id Subject Object Predicate Lexical cue
T266 0-19 Sentence denotes Key Resources Table
T267 20-57 Sentence denotes REAGENT or RESOURCE SOURCE IDENTIFIER
T268 58-103 Sentence denotes Chemicals, Peptides, and Recombinant Proteins
T269 104-139 Sentence denotes SARS-CoV-2 S protein This Study N/A
T270 140-173 Sentence denotes Human ACE2 protein This Study N/A
T271 174-219 Sentence denotes 2x Laemmli sample buffer Bio-Rad Cat#161-0737
T272 220-313 Sentence denotes Invitrogen NuPAGE 4 to 12%, Bis-Tris, Mini Protein Gel Thermo Fisher Scientific Cat#NP0321PK2
T273 314-383 Sentence denotes Coomassie Brilliant Blue G-250 Dye Thermo Fisher Scientific Cat#20279
T274 384-422 Sentence denotes Dithiothreitol Sigma Aldrich Cat#43815
T275 423-460 Sentence denotes Iodoacetamide Sigma Aldrich Cat#I1149
T276 461-486 Sentence denotes Trypsin Promega Cat#V5111
T277 487-510 Sentence denotes Lys-C Promega Cat#V1671
T278 511-534 Sentence denotes Arg-C Promega Cat#V1881
T279 535-558 Sentence denotes Glu-C Promega Cat#V1651
T280 559-583 Sentence denotes Asp-N Promega Cat#VA1160
T281 584-619 Sentence denotes Endoglycosidase H Promega Cat#V4871
T282 620-645 Sentence denotes PNGaseF Promega Cat#V4831
T283 646-706 Sentence denotes Chymotrypsin Athens Research and Technology Cat#16-19-030820
T284 707-757 Sentence denotes Alpha lytic protease New England BioLabs Cat#P8113
T285 758-811 Sentence denotes 18O water Cambridge Isotope Laboratories OLM-782-10-1
T286 812-854 Sentence denotes O-protease OpeRATOR Genovis Cat#G1-OP1-020
T287 855-869 Sentence denotes Deposited Data
T288 870-971 Sentence denotes MS data for site-specific N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019937
T289 972-1073 Sentence denotes MS data for site-specific O-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019940
T290 1074-1176 Sentence denotes MS data for deglycosylated N-linked glycopeptides for SARS-Cov-2 S and human ACE2 This Study PXD019938
T291 1177-1250 Sentence denotes MS data for disulfide bond analysis for SARS-Cov-2 S This Study PXD019939
T292 1251-1326 Sentence denotes MS data for N-linked glycomics deposited at GlycoPost This Study GPST000120
T293 1327-1402 Sentence denotes MS data for O-linked glycomics deposited at GlycoPost This Study GPST000121
T294 1403-1423 Sentence denotes Experimental Models:
T295 1424-1434 Sentence denotes Cell Lines
T296 1435-1463 Sentence denotes 293-F Cells GIBCO Cat#R79007
T297 1464-1489 Sentence denotes Vero-6 Cells ATCC CRL1586
T298 1490-1510 Sentence denotes Experimental Models:
T299 1511-1528 Sentence denotes Organisms/Strains
T300 1529-1564 Sentence denotes VSV(G)-Pseudoviruses This Study N/A
T301 1565-1588 Sentence denotes Software and Algorithms
T302 1589-1669 Sentence denotes pGlyco v2.2.2 Liu et al., 2017 http://pfind.ict.ac.cn/software/pGlyco/index.html
T303 1670-1735 Sentence denotes Proteome Discoverer v1.4 Thermo Fisher Scientific CAT#OPTON-30945
T304 1736-1819 Sentence denotes Byonic v3.8.13 Protein Metrics Inc. https://www.proteinmetrics.com/products/byonic/
T305 1820-1942 Sentence denotes ProteoIQ v2.7 Premier Biosoft (Bern et al., 2012) http://www.premierbiosoft.com/protein_quantification_software/index.html
T306 1943-2014 Sentence denotes GRITS Toolbox V1.1 Weatherly et al., 2019 http://www.grits-toolbox.org/
T307 2015-2100 Sentence denotes EMBOSS needle v6.6.0 Rice et al., 2000 https://www.ebi.ac.uk/Tools/psa/emboss_needle/
T308 2101-2157 Sentence denotes Biopython v1.76 Cock et al., 2009 https://biopython.org/
T309 2158-2205 Sentence denotes Rpdb v2.3 Julien Ide https://rdrr.io/cran/Rpdb/
T310 2206-2290 Sentence denotes SignalP V5.0 Almagro Armenteros et al., 2019 http://www.cbs.dtu.dk/services/SignalP/
T311 2291-2389 Sentence denotes LibreOFFICE Writer v6.4.4.2 The Document Foundation https://www.libreoffice.org/download/download/
T312 2390-2442 Sentence denotes GlyGen V1.5 York et al., 2020 https://www.glygen.org
T313 2443-2533 Sentence denotes GNOme V1.5.5 OBO Foundry https://github.com/glygen-glycan-data/GNOme/blob/master/README.md
T314 2534-2600 Sentence denotes GlyTouCan V3.1.0 Aoki-Kinoshita et al., 2016 https://glytoucan.org
T315 2601-2687 Sentence denotes Inkscape V1.0 Inkscape project contributors https://inkscape.org/release/inkscape-1.0/
T316 2688-2741 Sentence denotes ffmpeg V3.4 The FFmpeg developers https://ffmpeg.org/
T317 2742-2797 Sentence denotes Cygwin V3.1.5 Cygwin developers https://www.cygwin.com/