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CORD-19:133024fd511290554bcd6866e7401cb073d05cfe JSONTXT 11 Projects

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Id Subject Object Predicate Lexical cue
T1 0-89 Sentence denotes T Lymphocytes as Measurable Targets of Protection and Vaccination Against Viral Disorders
T2 91-99 Sentence denotes Abstract
T3 100-385 Sentence denotes Continuous epidemiological surveillance of existing and emerging viruses and their associated disorders is gaining importance in light of their abilities to cause unpredictable outbreaks as a result of increased travel and vaccination choices by steadily growing and aging populations.
T4 386-704 Sentence denotes Close surveillance of outbreaks and herd immunity are also at the forefront, even in industrialized countries, where previously eradicated viruses are now at risk of re-emergence due to instances of strain recombination, contractions in viral vector geographies, and from their potential use as agents of bioterrorism.
T5 705-1004 Sentence denotes There is a great need for the rational design of current and future vaccines targeting viruses, with a strong focus on vaccine targeting of adaptive immune effector memory T cells as the gold standard of immunity conferring long-lived protection against a wide variety of pathogens and malignancies.
T6 1005-1186 Sentence denotes Here, we review viruses that have historically caused large outbreaks and severe lethal disorders, including respiratory, gastric, skin, hepatic, neurologic, and hemorrhagic fevers.
T7 1187-1418 Sentence denotes To observe trends in vaccinology against these viral disorders, we describe viral genetic, replication, transmission, and tropism, host-immune evasion strategies, and the epidemiology and health risks of their associated syndromes.
T8 1419-1800 Sentence denotes We focus on immunity generated against both natural infection and vaccination, where a steady shift in conferred vaccination immunogenicity is observed from quantifying activated and proliferating, long-lived effector memory T cell subsets, as the prominent biomarkers of long-term immunity against viruses and their associated disorders causing high morbidity and mortality rates.
T9 1802-1952 Sentence denotes The world was forever changed by the introduction of vaccine against smallpox in the late 1700s, at the time protecting its first 100,000 individuals.
T10 1953-2203 Sentence denotes This was the first demonstration that a vaccine could successfully eradicate viruses causing disorders and diseases that even when not lethal, still had the potential to cripple both surviving populations and their surrounding geographical economies.
T11 2204-2576 Sentence denotes Since that time, the occurrence of epidemics and outbreaks are now at lower risk, following the introduction of massive vaccination programs able to induce immune system targeting of viruses causing severe disorders affecting distinct geographical locations, and with many epidemiological reports demonstrating long-term efficacy of viral control of non-naïve populations.
T12 2577-2710 Sentence denotes Outbreaks of existing and emerging viral diseases or disorders vary widely in duration and frequency across geographical populations.
T13 2711-3046 Sentence denotes Some can be predicted annually, while others may see decades between outbreaks, therefore driving the continuous epidemiological surveillance of associated infectious disorders, the development and implementation of targeting vaccines, and development of immune-monitoring strategies measuring vaccine efficiency in target populations.
T14 3047-3279 Sentence denotes Despite vaccination-mediated protection of numerous nations documenting complete eradication of the causative agents of viral disorders in endemic populations, there is threat of re-emergence of pandemic proportions of these agents.
T15 3280-3683 Sentence denotes Threats to virus re-emergence are caused by contemporary choices made to not vaccinate children, by strain recombination, by viral spread to naïve populations by world-travelers, migrants, or climate change, causing redistribution of viral vectors, by potential use of these agents in acts of bioterrorism or war upheaval, or by depletion of vaccination stocks required for protection against pandemics.
T16 3684-3956 Sentence denotes Other factors include the increasing and aging global population and increased number of immunocompromised individualsd factors strongly supporting the maintenance of herd immunity against existing viruses, despite lower incidence of outbreaks in industrialized countries.
T17 3957-4207 Sentence denotes In the event of a re-emergence of previously eradicated viruses or the acquisition of increased pathogenicity by existing viral strains, there is an urgent need for vaccine development strategies that can rapidly and effectively arrest global spread.
T18 4208-4344 Sentence denotes Important advances are continuously being made in vaccine development strategies toward the control of viruses and associated disorders.
T19 4345-4492 Sentence denotes Vaccine design has been modified from the use of attenuated viruses to use of more precise viral protein subunits specifically targeted by T cells.
T20 4493-4659 Sentence denotes Historically, vaccination immunogenicity was documented by measures of serum immunoglobulin (Ig) classes and antigen-specific antibodies produced by humoral immunity.
T21 4660-4858 Sentence denotes More recently, quantification of cellular components of innate immunity at the interface between innate and adaptive immunity are made, in addition to more precise measurements of adaptive immunity.
T22 4859-5059 Sentence denotes Long-term protection achieved by adaptive immunity can be quantified by measuring levels of circulating cytokines, along with specific phenotypic profiles of effector memory, antigen-specific T cells.
T23 5060-5373 Sentence denotes Though both humoral and cellular arms of immunity are integrally linked during the initial induction of immunity against pathogens, these can become disconnected with developing pathology due to their individual needs for survival factors, unequal declines in immune function, and differential cellular lifespans.
T24 5374-5776 Sentence denotes This loss of correlation between memory T cells and neutralizing antibody responses varies according to different viruses, suggesting that independent time course measures of these separate immune responses are required over time for adequate recording of biomarkers of natural infection and vaccine efficacy or suggesting that T cell status may be most crucial measure of conferred long-term immunity.
T25 5777-6051 Sentence denotes From the standpoint of fundamental or clinical research, it has become established that the targeted induction of specific pathogen-and tumorclearing effector memory T cell subsets is our endgame armor toward long-term human survival against infectious diseases and cancers.
T26 6052-6246 Sentence denotes This chapter provides an overview of viruses that have historically caused severe lethal disorders, including those of the respiratory, gastric, skin, hepatic, neurologic, and hemorrhagic types.
T27 6247-6506 Sentence denotes The features of viruses and associated disorders that we herein describe include viral genetics and replication cycles, transmission modalities, cell and organ tropism, host-immune evasion strategies, associated viral disorders and diseases, and epidemiology.
T28 6507-6706 Sentence denotes We also report on well-accepted and other important documented instances of viral control by T cells, currently available and successful vaccines, and recorded measures of vaccination immunogenicity.
T29 6707-6852 Sentence denotes We focus on quantification of vaccine-induced effector memory T cellemediated immunity, representing the gold standard of successful vaccination.
T30 6853-7103 Sentence denotes Just as it is for advances in vaccinology, investigations into the biology of T cells are currently at the forefront of many research fields examining various disorders, diseases, and malignancies not formerly considered to be controlled by immunity.
T31 7104-7564 Sentence denotes Although many viral infections are limited to the upper respiratory tract, it is lower respiratory tract infections (LRTI) that most predominantly cause enormous disease burden in children and immunocompromised adults suffering from human immunodeficiency virus (HIV) infection or in patients having received stem cell or solid organ transplants for which immunosuppressive therapies were administered (Henrickson et al., 2004; Pavia, 2011; Kim et al., 2007) .
T32 7565-7743 Sentence denotes Acute lower respiratory illnesses (ALRIs) are a major cause of morbidity and mortality, accounting for approximately 1.6 million deaths, globally, per year (Black et al., 2010) .
T33 7744-7857 Sentence denotes Frequently overlapping LRTI syndromes include bronchiolitis, asthma exacerbation, wheezing, croup, and pneumonia.
T34 7858-8213 Sentence denotes Although certain specific syndromes can be more precisely associated with infection by specific viruses, syndromes overlaps can complicate diagnosis of these numerous viruses, and quite often, difficulties in differentiating between viral and bacterial pneumonias symptoms can also result in antibiotics being mistakenly prescribed during viral disorders.
T35 8214-8868 Sentence denotes Several viruses are normally, however, considered to be primarily responsible for LRTIs, beginning with upper respiratory tract infections, most commonly caused by respiratory viruses that are typically spread from person-to-person by contact with infected respiratory droplets, and including respiratory syncytial virus (RSV), epidemic influenza A and B, H5N1 and H7N9 avian influenza A viruses (IAVs), parainfluenza viruses 1 through 4, adenovirus, human metapneumovirus (hMPV), severe acute respiratory syndrome coronavirus, human coronaviruses NL63 and HKU1, rhinoviruses, and bocaviruses (Pavia, 2011; Mahony, 2008; Nichols et al., 2008) (Table 1) .
T36 8869-9122 Sentence denotes Currently, vaccines for human influenza viruses, human parainfluenza viruses (HPIVs), and adenoviruses causing upper and lower respiratory infections are used to control these infections and the resulting propagation of their morbid symptom derivations.
T37 9123-9360 Sentence denotes Human influenza viruses make up three of the five genera of the family Orthomyxoviridae and are classified as A, B, and C types, based on their highly conserved matrix protein 1 (M1), membrane matrix protein (M2), and nucleoprotein (NP).
T38 9361-9513 Sentence denotes Type A influenza viruses can be further sub-subtyped by the antigenicity of their hemagglutinin (HA) and neuraminidase (NA) surface glycoproteins (GPs).
T39 9514-9790 Sentence denotes Antigenic drift, caused by point mutations in HA and NA and recombination of the HA genes, results in the generation of new strains that can escape pre-existing immunity, causing both the prediction of circulating strains difficult and antigenic mismatch by existing vaccines.
T40 9791-9926 Sentence denotes Approximately 18 HA and 9 NA subtypes of influenza A are documented in aquatic birds, representing their natural hosts (i.e., vectors).
T41 9927-10083 Sentence denotes Influenza A H1 and H3 subtypes cocirculate seasonally, and Influenza B viruses can only infect humans, via two distinct, seasonally cocirculating, lineages.
T42 10084-10194 Sentence denotes Type C influenza viruses are more rarely documented to infect humans and pigs (Berlanda Scorza et al., 2016) .
T43 10195-10387 Sentence denotes Influenza viruses cause acute upper and lower respiratory infections, and due to their rapid and unpredictable genetic drift, represent the most likely of pathogens to cause a human pandemics.
T44 10388-10599 Sentence denotes Annually, human influenza viruses have the potential to cause up to 5 million cases of severe illness, with an associated 500,000 deaths worldwide (WHO_Influenza_(Seasonal), 2018), causing great economic burden.
T45 10600-10766 Sentence denotes Four influenza pandemics have occurred over the past century, as a consequence of the H1N1 (1918), H2N2 (1957), H3N2 (1968), and H1N1 (1977) variants (Palese, 2004) .
T46 10767-10918 Sentence denotes Since the most recent outbreak in 2009, an estimated 200,000 people globally have succumbed to the H1N1 variant of swine origin (Dawood et al., 2012) .
T47 10919-11081 Sentence denotes Epithelial cells that are infected with influenza virus produce inflammatory cytokines acting as chemoattractants for homing macrophages and dendritic cells (DC).
T48 11082-11240 Sentence denotes DCs take up influenza viral particles to trigger their maturation and pursuant migration to the lymph, where they initiate antigen-specific T cell maturation.
T49 11241-11648 Sentence denotes These influenza-specific effector T cells then enter the respiratory tract to counteract viral titres through cytokine expression and the direct lysis of infected cells, with activated CD8 þ effector cytotoxic T cells (CTLs) representing the main constituents of this response by their release of perforins and granzymes, and the engagement of tumor necrosis factor (TNF) receptors (Spitaels et al., 2016) .
T50 11649-11957 Sentence denotes Influenza-specific CD4 þ T helper cells can act directly and indirectly in viral clearance, primarily by producing cytokines that induce the functions of B cells and CD8 þ T cells and which have also been reported to directly eliminate infected cells themselves (Topham and Doherty, 1998; Hua et al., 2013) .
T51 11958-12323 Sentence denotes While preexisting CD8 þ T cell immunity has not yet been demonstrated to prevent infection from occurring, it is hypothesized to be the result of the loss of granzyme expression by memory CD8 þ T cells and populations of IAVspecific CD8 þ T cells are still importantly correlated with the control of spread and recovery in healthy populations (Grant et al., 2016) .
T52 12324-12582 Sentence denotes The most currently administered influenza vaccines are inactivated (IV) trivalent (TIV) or quadrivalent formulations containing equal amounts of HA of two influenza A strains (H1N1 and H3N2) and one of two influenza B strains (Yamagata and Victoria lineage).
T53 12583-12822 Sentence denotes These are derived from viruses typically grown in fertilized chicken eggs, are mainly focused on eliciting a strainmatched humoral immune responsedrequiring yearly updatesdand are unable to provide protection to all vaccinated individuals.
T54 12823-13129 Sentence denotes The requirement of memory T cell immunity for long-term protection against influenza virus promotes the development of vaccines that elicit both humoral and cellular immunity: a strategy expected to overcome the inadequacies of current vaccines against influenza and other viruses (Spitaels et al., 2016) .
T55 13130-13271 Sentence denotes There is broad interest in the development of a universal influenza vaccine, considered to be the "holy grail" of influenza vaccine research.
T56 13272-13740 Sentence denotes This approach is being developed to use virus-infected cell-killing antibodies that produce an antiviral environment; these termed antibody-dependent cellular cytotoxicity (ADCC)-mediating antibodies, which are predicted to link innate and adaptive immune responses, and is becoming possible due to new technologies for rapid isolation and characterization of monoclonal antibodies targeting conserved regions of influenza virus, reviewed in Jegaskanda et al. (2017) .
T57 13741-14052 Sentence denotes This approach has been postulated to work, in part, from reports of IAVspecific CD8 þ T cells, promoting viral clearance in the absence of neutralizing antibodies, and can also mediate cross-reactive immunity against distinct IAVs to drive a rapid recovery from severe influenza disorders (Grant et al., 2016) .
T58 14053-14176 Sentence denotes The induction of infection-permissive immunity is both protective and allows virus-induced cross-reactive immune responses.
T59 14177-14375 Sentence denotes Vaccines targeting the conserved ectodomain of M2 deliver this kind of non-neutralizing immunity since these antibodies rely on Fc receptors and innate immune components (El Bakkouri et al., 2011) .
T60 14376-14623 Sentence denotes Antagonizing antibodies inhibiting NA activity represents another promising strategy, not by blocking viral entry and eliciting sterilizing immunity, but by contributing to immunity against a virus possessing a similar NA type (Wan et al., 2013) .
T61 14624-15097 Sentence denotes There is also progress being made in the development of recombinant T celleinducing vaccines, with the most advanced version of this strategy demonstrated by Modified Vaccinia Ankara (MVA) viruses expressing influenza virus NP and M1 antigens (Berthoud et al., 2011) , with vaccinated individuals demonstrating increases in interferon-gamma (IFN-g) expressing CD8 þ T cells and increased protection against influenza infection (Antrobus et al., 2012; Powell et al., 2013) .
T62 15098-15339 Sentence denotes Co-administration of this MVA-based vaccine with TIV formulations results in increased influenza strainespecific antibody responses and the generation of memory T cells that recognize a range of influenza A subtypes (Antrobus et al., 2014) .
T63 15340-15623 Sentence denotes Additional research demonstrates production of antigen-specific T cell responses using alternate prime/boost regiments of combinations of vaccination regimens employing recombinant replication-deficient adenovirus or MVA, expressing IAV NP and matrix protein 1 (Lambe et al., 2013) .
T64 15624-15942 Sentence denotes Quality and clonal T cell receptor (TCR) characteristics of influenza-specific CD8 þ T cells, in addition to in silico predicted and peptide-based approaches for pools of minimal IAV epitopes, are investigated for their induction of cellular immunity and recognition by CD8 þ T cells (reviewed in Grant et al., 2016) .
T65 15943-16149 Sentence denotes HPIV are enveloped negative-sense RNA genome viruses of 150e250 nm, belonging to the large and rapidly growing Paramyxoviridae family, causing significant human and veterinary disorders (Henrickson, 2003) .
T66 16150-16440 Sentence denotes HPIV is divided into serotypes 1 to 4, with HPIV-1 representing the most common etiologic agent of associated disease, but with HPIV-1, -2, and -3 representing common causative agents of respiratory illness in pediatric, geriatric, and immunocompromised populations (Schmidt et al., 2011) .
T67 16441-16631 Sentence denotes HPIVs are a common cause of acute respiratory illness throughout all stages of human life (Schomacker et al., 2012) , causing acute respiratory infections in children (Cooney et al., 1975) .
T68 16632-16914 Sentence denotes Second, only to human respiratory syncytial virus, HPIVs are the major contributors to hospitalization due to ALRIs and global pneumonia mortalities in young children, and up to 80% of children are seropositive for HPIVs by the age of 5 years (Murphy, 1988; Weinberg et al., 2009) .
T69 16915-17152 Sentence denotes HPIV infections can induce potent humoral and cellular immune responses, including innate immune responses, local and systemic IgG and IgA responses, and adaptive CD8 þ and CD4 þ T cell responses (Gitlin et al., 2010; Hou et al., 1992) .
T70 17153-17544 Sentence denotes Though cellular responses can restrict HPIV replication dynamics and clear primary infections, neutralizing antibodies against virus envelope hemagglutininneuraminidase (HN) and fusion (F) GPs are required for early infection (Suzuki et al., 2001; Zhang et al., 2005) and confer long-term protection against HPIV-related disorders (Murphy, 1988; Spriggs et al., 1987; Schmidt et al., 2011) .
T71 17545-17616 Sentence denotes Currently, there is no vaccine to protect against human HPIV infection.
T72 17617-17918 Sentence denotes Progress in the development of HPIV vaccines using reverse genetics for serotypes À1 to À3 has generated several live-attenuated, intranasal HPIV vaccines evaluation in adults and in children, two of which, HPIV-3 are well tolerated in HPIV3-seronegative pediatric populations (Schmidt et al., 2011) .
T73 17919-18167 Sentence denotes Ongoing pediatric trials testing live-attenuated HPIV vaccines for HPIV-1 and HPIV-2 predict these will replicate in the upper respiratory tract of infants to induce the full spectrum of humoral and cellular immune responses (Karron et al., 2015) .
T74 18168-18332 Sentence denotes Heterologous (i.e., Jennerian) vaccine design strategies using the Sendai virus (SeV) to control infections by HPIVs and RSV are discussed in the following section.
T75 18333-18483 Sentence denotes Human respiratory syncytial virus (RSV) types A and B are found within the genus Orthopneumovirus, family Pneumoviridae, of the order Mononegavirales.
T76 18484-18616 Sentence denotes RSV is an enveloped, spherical virus of w150 nm in diameter, and reaching up to several micrometers in length (Gower et al., 2005) .
T77 18617-18762 Sentence denotes The negative-sense RNA genome encodes for outer structural, NP, polymerase, NS, transmembrane, and regulatory proteins (Griffiths et al., 2017) .
T78 18763-19045 Sentence denotes RSV is a major cause of ALRIs, resulting in numerous pediatric hospitalizations globally, where by 3 years of age, most children have been exposed and are at risk of developing life-threatening bronchiolitis and pneumonia (Glezen et al., 1986; Hall et al., 2009; Henrickson, 1994) .
T79 19046-19350 Sentence denotes Up to 120,000 infants are hospitalized due to RSV infection in the United States (Marks, 1992) , and 34 million episodes of RSV-associated ALRI in children globally represent at least 3 million cases resulting in hospitalization, and approximately 199,000 associated deaths per year (Nair et al., 2010) .
T80 19351-19520 Sentence denotes A balance of adaptive immune CTLs and neutralizing antibodies of the humoral immune response mediate protection and clearance of RSV infection (Griffiths et al., 2017) .
T81 19521-19899 Sentence denotes Though neutrophils are the highest proportion of leukocytes found in the airways of those infected with RSV (Everard et al., 1994) , and despite observations that natural killer (NK) cells are first to attain infected airways (Hussell and Openshaw, 1998) , it is CD4 þ helper and CD8 þ CTLs that correlate with the early clearance of RSV-infected cells (Anderson et al., 1990) .
T82 19900-20100 Sentence denotes In infants and immunocompromised populations, fatalities resulting from RSV infection are associated with deficiencies in CD4 þ and cytotoxic CD8 þ T cells (Hall et al., 1986; Welliver et al., 2008) .
T83 20101-20357 Sentence denotes Later in infection, increases in neutralizing antibodies prevent reinfection by opsonizing viral epitopes required for RSV entry and infection, and RSV clearance can be associated with RSV-neutralizing nasal Immunoglobulin A (IgA) (Mcintosh et al., 1978) .
T84 20358-20509 Sentence denotes More recently, enhanced RSV clearance with reduced disease severity has been associated with vaccine-elicited memory CD8 þ T cells (Lee et al., 2012) .
T85 20510-20777 Sentence denotes While memory CD8 þ T cells can mediate protection against RSV infection, in the absence of antibodies and memory CD4 þ T cells, these cause mortality via systemic proinflammatory cytokine storms and local IFN-g production (Stoley et al., 2016; Schmidt et al., 2018) .
T86 20778-20945 Sentence denotes Other recent studies however indicate that the CD8 þ T cell response may not be the major determinant of severity of RSV-related pathology (Collins and Melero, 2011) .
T87 20946-21119 Sentence denotes There are currently several recombinant RSV subunit vaccines in clinical trials, including the Novavax RSV F Vaccine representing the most promising candidate for licensing.
T88 21120-21277 Sentence denotes This RSV F subunit targeting vaccine has been demonstrated to elicit the expression of circulating neutralizing antibodies against RSV (Glenn et al., 2016) .
T89 21278-21640 Sentence denotes Toward the development of future adaptive immunity-inducing RSV vaccines, it has been demonstrated that the transfer of airway-resident T cells protect against RSV, where it has been suggested that, to lessen the burden of T cellemediated damage to airways, the induction of lung tissue T cells should be the focus of vaccine development (Kinnear et al., 2018) .
T90 21641-21854 Sentence denotes Recently, the SeV has been used as a component of a Jennerian vaccine model for HPIV-1 and as a backbone for other viruses causing serious lower respiratory infections (LRIs), including other HPIVs, RSV, and hMPV.
T91 21855-22175 Sentence denotes SeV-based vaccines have proven to be effective toward inducing B cell and T cell immune responses, and in the protection from HPIV-1, -2, and -3, and RSV, where they can also be used in combination with other vaccines to primeeboosts or to target one or more than one paramyxovirus pathogen (Russell and Hurwitz, 2016) .
T92 22176-22424 Sentence denotes SeV is attractive for use in human vaccination because it is a murine pathogen unable to infect humans (Bousse et al., 2006) and therefore does not require attenuation as it can never revert to a human pathogenic phenotype (Schickli et al., 2012) .
T93 22425-22961 Sentence denotes Another important feature supporting the use of SeV as a pan-virus vaccination agent stems from its ability to grow transiently in mammalian cells, accommodating the endogenous expression of antigens with posttranslational modifications matching those of the target antigens and neutralizing epitopes (Henrickson et al., 1991) , with endogenous expression of antigens ensuring robust activation of CD8 þ T cells able to destroy antigen-producing cells and terminate virus amplification (York and Rock, 1996; Russell and Hurwitz, 2016) .
T94 22962-23136 Sentence denotes In murine studies, SeV could elicit rapid and durable respiratory mucosa and systemic HPIV-specific B cell and T cell responses (Sealy et al., 2010; Rudraraju et al., 2011) .
T95 23137-23240 Sentence denotes Clinical testing of human populations infected with RSV and HPIVs is underway (Adderson et al., 2015) .
T96 23241-23374 Sentence denotes For a full review of current development of antiviral compounds and vaccine candidates tested against RSV, see Costello et al., 2012.
T97 23375-23447 Sentence denotes 2.4 Adenovirus Classification, Epidemiology, Immunology, and Vaccinology
T98 23448-23656 Sentence denotes Human adenoviruses (HAdVs) are classified in the Mastadenovirus genus, containing seven known HAdV species, from HAdV-A to HAdV-G, and with at least 57 unique known human serotypes (Buckwalter et al., 2012) .
T99 23657-23823 Sentence denotes Adenoviruses are nonenveloped double-stranded DNA viruses ranging from 65 to 80 nm in diameter and are composed of a protein capsid, a NP core, and internal proteins.
T100 23824-23905 Sentence denotes DNA homology between HAdV subgroups ranges from 48% to 99% (Walls et al., 2003) .
T101 23906-24101 Sentence denotes HAdV infection rarely causes serious or fatal illness in immunocompetent individuals but may cause severe disease in immunocompromised, pediatric, and geriatric populations (Lynch et al., 2011) .
T102 24102-24250 Sentence denotes Clinical disease symptoms associated with HAdVs are dependent on HAdV genotypes, with at least 69 recognized, and assigned to subgroups A through G.
T103 24251-24439 Sentence denotes Clinical symptoms include fever, rhinorrhea, pharyngitis, conjunctivitis, gastroenteritis, bronchitis, pneumonia, acute hemorrhagic cystitis, and meningoencephalitis (Lynch et al., 2011) .
T104 24440-25011 Sentence denotes Recombination between HAdVs are largely responsible for outbreaks of acute febrile respiratory disease in immunocompetent military recruits, where serotypes 4 and type 7 have been documented to account for approximately 60% of these respiratory illnesses (Hilleman et al., 1957; Dudding et al., 1973) , and are associated to other frequently occurring disorders including upper and lower respiratory illnesses, gastroenteritis, hepatitis, keratoconjunctivitis, meningoencephalitis, cystitis, and myocarditis in these immunocompetent populations, reviewed in Lion (2014) .
T105 25012-25082 Sentence denotes Adenoviruses are endemic in pediatric populations (Echavarria, 2008) .
T106 25083-25272 Sentence denotes The incidence of adenovirus infection peaks in infants and children, where, globally, 5%e7% of respiratory tract infections in pediatric patients are ascribed to HadV (Ghebremedhin, 2014) .
T107 25273-25416 Sentence denotes Recently, re-emergence of type 7d HAdV has caused fatal outbreaks due to severe pneumonia syndromes in children from high-density populations .
T108 25417-25772 Sentence denotes Immune responses to adenovirus infection are dependent on primary sites of inoculation, methods of transmission, viral serotypes, and secretory Ig antibody status of the infected host; IgAs are present in respiratory tract early following infection, and IgG2 is present in serum and nasal secretions at later time points, reviewed in Walls et al. (2003) .
T109 25773-25855 Sentence denotes Histopathological changes resulting from infection can be divided into two phases:
T110 25856-26081 Sentence denotes The first phase of immune histopathology predominantly involves nonspecific, cytokine-mediated inflammatory recruitment of monocytes and macrophages, while the second phase involves T cell infiltration (Prince et al., 1993) .
T111 26082-26416 Sentence denotes T cellemediated immunity is believed to be required for HadV recovery from acute infections, and individuals lacking adaptive immunity are found to be at elevated risk of infection, with CD8 þ T cells as primary mediators of response to respiratory viruses, with relatively little contribution by CD4 þ cells (Woodland et al., 2001) .
T112 26417-26753 Sentence denotes However, following adenovirus exposure, CD4 þ T cells have been shown to be responsible for increasing proliferation status of peripheral blood mononuclear cells (PBMC), and CD4 þ T cells represent the major CTL subsets produced and recognize conserved antigens across adenovirus serotypes (Flomenberg et al., 1995; Regn et al., 2001) .
T113 26754-27013 Sentence denotes Adenoviruses have, however, evolved several hostevasion strategies, including inhibition of apoptosis, responses to IFN-g and TNF-a, and major histocompatibility complex (MHC) class I expression (Mahr and Gooding, 1999; Wold et al., 1994 Wold et al., , 1999 .
T114 27014-27295 Sentence denotes The live, oral adenovirus vaccine was licensed in the 1970s for active immunization toward the prevention of febrile acute respiratory disease in military populations, where it initially reduced adenovirus-associated respiratory illnesses by over five-fold (Dudding et al., 1973) .
T115 27296-27555 Sentence denotes Vaccine stock depletion and associated epidemics led to the manufacture of another vaccine in 2011, again denting adenovirus-associated disease burden by approximately 100-fold among recruits within the first 2 years of its introduction (Radin et al., 2014) .
T116 27556-27741 Sentence denotes These oral lyophilized vaccines replicate asymptomatically in the gut, inducing humoral and cell-mediated immunity, to confer longlasting protection from infection (Berg et al., 2014) .
T117 27742-28019 Sentence denotes Due to their abilities to induce potent transgene product-specific T-and B-cell responses, adenovirus vectors are explored for use as vaccine carriers against a variety of many other pathogens (Chen et al., 2010; Harro et al., 2009; Hill et al., 2010; Radosevic et al., 2007) .
T118 28020-28251 Sentence denotes ALRIs by respiratory viruses are a major cause of morbidity and mortality, accounting for over 1.5 million deaths globally each year, and are predominantly resulting from human transmission of virus containing respiratory droplets.
T119 28252-28362 Sentence denotes Licensed vaccines are useful against several viruses causing these severe, often lethal, associated disorders.
T120 28363-28466 Sentence denotes Influenza has no borders and causes great economic burden, making it a prominent international concern.
T121 28467-28627 Sentence denotes Its rapid and unpredictable genetic drift causes human pandemics, where it has an annual potential of causing 5 million infections and 500,000 deaths worldwide.
T122 28628-28977 Sentence denotes Influenza vaccinology requiring constant yearly updates has stimulated interest in the development of universal T cell vaccines that can elicit both humoral and cellular immunity, whereby influenza-specific memory CD8 þ T cell responses against a range of influenza subtypes could be induced to clear infection in absence of neutralizing antibodies.
T123 28978-29103 Sentence denotes RSV causes 34 million ALRIs in children annually, resulting in 3 million hospitalizations and almost 200,000 deaths per year.
T124 29104-29460 Sentence denotes RSV is cleared by balance of adaptive immune CTLs and humoral neutralizing antibody responses, correlating most highly with CD4 þ helper and CD8 þ CTLs during natural infections, and with memory CD8 þ and CD4 þ T cells following vaccination, with research endeavours targeting their strengthening by specific induction of lung tissue RSV targeting T cells.
T125 29461-29546 Sentence denotes Second, only to Rsv, Hpivs cause many ARI-and LRI-associated mortalities in children.
T126 29547-29770 Sentence denotes HPIVs can induce potent humoral, innate, and adaptive CD8 þ and CD4 þ T cell responses able to restrict their replication and where neutralizing antibodies can confer long-term protection against their associated disorders.
T127 29771-29933 Sentence denotes HAdVs infect both immunocompetent and immunocompromised humans and have been shown to cause up to 60% of respiratory disorders in hospitalized military personnel.
T128 29934-30244 Sentence denotes Despite their having evolved convoluted host-evasion strategies, adaptive T cell immunity against HAdVs starts early in diseases phases and is key to recovery from acute natural infection, with its greatest contributions by cytotoxic CD8 þ T cells that require stimulating by CD4 þ T cells for their expansion.
T129 30245-30408 Sentence denotes Vaccines against HAdVs induce both humoral and adaptive immunity, including potent transgene virus-specific T-and B-cell responses conferring long-term protection.
T130 30409-30557 Sentence denotes Success from HAdV vaccinology has influenced explorations of adenovirus vectors as target carriers for vaccination against numerous other pathogens.
T131 30558-30820 Sentence denotes Diarrheal disorders remain a leading cause of morbidity and mortality worldwide, with these listed in the top five causes of death worldwide, and which are associated with global estimates at 4e6 million deaths per year; reviewed in Clark and Mckendrick (2004) .
T132 30821-31043 Sentence denotes The majority of gastric infections are viral in origin, and viral gastroenteritis is one of the most common illnesses in all age groups and an important cause of morbidity in industrialized countries (Chang et al., 2003) .
T133 31044-31305 Sentence denotes The human risk of viral gastroenteritis in the United States alone is at least one per individual per year, with 450,000 adults and 160,000 children hospitalizations recorded and an associated 4000 mortalities per year (Mead et al., 1999; Mounts et al., 1999) .
T134 31306-31453 Sentence denotes Several viruses are responsible for viral gastroenteritis, where their transmission typically occurs from person-to-person by the oral-fecal route.
T135 31454-31637 Sentence denotes Viruses commonly causing gastroenteritis include rotavirus (RV; causing the most serious gastric disorders), norovirus, astrovirus, adenovirus, and coronavirus-like agents (Table 1) .
T136 31638-31697 Sentence denotes RVs are classified as a genus within the family Reoviridae.
T137 31698-32067 Sentence denotes These are nonenveloped viruses measuring 70 nm in diameter and have inner and outer capsids surrounding their cores containing double-stranded RNA viral genomes encoding viral capsid (VP-1 to VP-6, and VP-7; VP4 outer capsid protein mediates virus attachment to cells) (Bishop et al., 1973) and nonstructural (NSP-1 to NSP-6) proteins, reviewed in Desselberger (2014) .
T138 32068-32384 Sentence denotes RVs classify into seven serotypes (AeG), based on antigenic properties of the inner capsid VP6 protein, where subtypes AeC represent human pathogens and are further subclassified into serotypes within these groups on the basis of differing outer capsid composition (Anderson and Weber, 2004; Wilhelmi et al., 2003) .
T139 32385-32657 Sentence denotes Diarrhea is a major cause of death among children globally (Liu et al., 2012) , and RV is the leading cause of severe diarrhea, globally causing an estimated 453,000 deaths in developing countries and 2.3 million pediatric patient hospitalizations Parashar et al., 2003) .
T140 32658-32845 Sentence denotes RV also represents a significant cause of disease in industrialized countries, with greater numbers of hospital admissions reported relative to developing countries (Chang et al., 2003) .
T141 32846-33220 Sentence denotes Though Group A RV causes the majority of endemic infections and can also lead to significant outbreaks in infant and geriatric populations (Villena et al., 2003; Marshall et al., 2003) , group B RVs are less common but can also lead to outbreaks and epidemics (Sanekata et al., 2003; Ahmed et al., 2004) , whereas group C RV is less often observed causing sporadic diseases.
T142 33221-33341 Sentence denotes Of the existing 10 G and eight P RV group A serotypes, G1 to 4, P (Kostouros et al., 2003; Clark and Mckendrick, 2004) .
T143 33342-33771 Sentence denotes Studies of T cell responses to RV infection in humans have reported that most healthy adults and children have circulating RV-specific T cells, with approximately 50% of RV-CD4 þ T cells expressing the intestinal homing receptor a4b7, and with circulating RV-CD4 þ and RV-CD8 þ T cells secreting IFN-g or interleukin (IL)-2 (Makela et al., 2004; Offit et al., 1992; Yasukawa et al., 1990; Rott et al., 1997; Parra et al., 2014) .
T144 33772-34105 Sentence denotes Frequencies of circulating IFN-g þ RV T cells are comparable to those specific for other mucosal respiratory viruses (Mesa et al., 2007) , but these often possess profiles of terminally differentiated effector cells that are usually associated to those unable to provide long-term immunity (Parra et al., 2014) . (Yen et al., 2014) .
T145 34106-34232 Sentence denotes As in the case of natural neonatal RV infection, fair protection rates are achieved via humoral immunity using these vaccines.
T146 34233-34393 Sentence denotes Though these are unable to protect against RV reinfection, they do offer protection against severe associated clinical symptoms causing patient hospitalization.
T147 34394-34593 Sentence denotes These vaccines offer both homotypic and heterotypic immunity, and protection often correlates with increases in RV typee specific IgG or IgA antibodies, reviewed in Desselberger and Huppertz (2011) .
T148 34594-34820 Sentence denotes Although RV vaccineeinduced humoral immunity substantially decreases disease burden, these vaccination strategies are less effective and difficult to implement in low-income countries requiring them most (Patel et al., 2012) .
T149 34821-35133 Sentence denotes As with natural RV infection, vaccines provide nonsterilizing immunity to children (Angel et al., 2007) , where lack of establishment of long-term immunity against RV causes half of children's guardians to be at risk of becoming infected and presenting with severe associated disorders (Rodriguez et al., 1987) .
T150 35134-35321 Sentence denotes This further demonstrates that RV-specific T (RV-T) cells are crucial for the development of overall, long-term, protective immunity against RV (Franco et al., 2006; Offit et al., 1993) .
T151 35322-35576 Sentence denotes Indeed, in models of RV infection, vaccine-induced protective immune responses are dependent on antiviral cytokine production and by direct killing of RV-infected cells by T cell and B cell adaptive immune subsets (Jiang et al., 2008; Wen et al., 2016) .
T152 35577-36002 Sentence denotes In addition, with observations that gut CD4 þ T cells may become tolerogenic or anergic in response to RV infection, stimulating T cells with RV antigen in the presence of IL-2, IL-12, or R59949, a pharmacological diacylglycerol kinase alpha inhibitor, causes increased PBMC frequencies of RV antigen-specific T effector cells, including RV-CD4 þ TNF-a þ , RV-CD4 þ IFN-g þ , and RV-CD8 þ IFN-g þ cells (Parra et al., 2014) .
T153 36003-36068 Sentence denotes Diarrheal disorders cause an annual 4e6 million deaths worldwide.
T154 36069-36273 Sentence denotes RV is the leading cause of severe diarrhea outbreaks in infant and geriatric populations, with global annual estimates of 453,000 deaths in developing countries and 2.3 million pediatric hospitalizations.
T155 36274-36583 Sentence denotes Most immunocompetent individuals have circulating RV-specific CTLs at comparable frequencies to those elicited by other respiratory viruses, but which have terminally differentiated effector profiles rendering them incapable of conferring long-term protection against the reoccurrence of associated disorders.
T156 36584-36807 Sentence denotes RV vaccineemediated protection from severe disorders is from humoral nonsterilizing immunity unable to protect against reinfection, yet vaccination programs are challenging to implement in countries requiring them the most.
T157 36808-36975 Sentence denotes RV-specific T cells are key to long-term protection, and vaccineinduced protection is dependent on cytokine production and direct killing of infected cells by T cells.
T158 36976-37125 Sentence denotes Countermeasures against crucial helper CD4 þ T celledeveloping anergic states may assist the development of vaccines conferring long-term protection.
T159 37126-37234 Sentence denotes An exanthem is a widespread eruptive skin rash that may be associated with fever or other systemic symptoms.
T160 37235-37564 Sentence denotes More than 50 infectious agents causing exanthems have been identified (Cherry, 1983) , where more than 70% of recorded cases of combined fever and widespread rash in pediatric populations were caused by viral infections, relative to the 20% resulting from bacterial infections (Goodyear, Laidler, Price, Kenny and Harper, 1991) .
T161 37565-37784 Sentence denotes Correct diagnosis of these skin manifestations, resulting from direct inoculation of the infectious agent onto the cutaneous surface, or by dissemination from a distant site, is a main research theme on viral exanthems.
T162 37785-37977 Sentence denotes This is because, while infections by many viral (i.e., paraviral) exanthems are benign and resolve spontaneously, others may rapidly lead to fatal conditions, reviewed in Drago et al. (2017) .
T163 37978-38246 Sentence denotes Thus, special attention in diagnosing even vaccine-preventable viral exanthems must be applied to avoid the arising of serious complications in nonimmune pregnant women and their fetuses from the more harmful classes of viruses causing exanthems (White et al., 2012) .
T164 38247-38659 Sentence denotes Common exanthematous infections are typically caused by transmission of viruses from person-to-person (with exception of alphaviruses having a mosquito vector), and where a multitude of viruses are their causative agents, including rubeola virus, rubella virus, human parvovirus B19, human herpesvirus (HHV) type 6, varicella-zoster virus (VZV), variola, alphaviruses, and molluscum contagiosum virus (Table 1) .
T165 38660-39023 Sentence denotes Numerous other exanthematous disorder causing viruses are not covered in this section, including Ebola and Zika, but which are becoming classified as emerging viral exanthems due to the increasing numbers of at-risk populations and the critical need to classify these diseases to minimize outbreaks and risk to pregnant women and fetuses (Keighley et al., 2015) .
T166 39024-39281 Sentence denotes Rubeola, or measles virus (MeV), belonging to the morbillivirus genus of the Paramyxoviridae family, is a negative-sense RNA virus having a nonsegmented genome and a lipid envelope, and measuring up to 250 nm in diameter, reviewed in Griffin et al. (2012) .
T167 39282-39453 Sentence denotes The 16 kb genome encodes eight proteins: the viral envelope is composed of hemagglutinin (H) and fusion (F) GPs projecting from the matrix (M) protein lining its interior.
T168 39454-39639 Sentence denotes The helical nucleocapsid is composed of the RNA and nucleocapsid (N) protein packed within the envelope as a coil with the phosphoprotein (P) and large polymerase (L) proteins attached.
T169 39640-39761 Sentence denotes The two NS proteins, C and V, regulate cellular response to infection and modulate IFN signaling (Bellini et al., 1985) .
T170 39762-39858 Sentence denotes Humans are the only natural host of highly contagious MeV virus spread by the respiratory route.
T171 39859-40065 Sentence denotes Despite the availability of a safe and efficacious vaccine, measles remains one of the most important viruses causing child morbidity and mortality worldwide (Moss and Griffin, 2006; Wolfson et al., 2009) .
T172 40066-40310 Sentence denotes Infection by MeV is associated with up to 10% of mortality rates in African children (Grais et al., 2007; Nandy et al., 2006) , and with 25% in unvaccinated refugee camp and virus-naive population mortalities (Moss, 2007; Shanks et al., 2011) .
T173 40311-40548 Sentence denotes Female mortality is a dominant feature disorders resulting from infection (Garenne, 1994) , and many acute mortalities from secondary infections resulting from immune suppression induced by MeV are also observed (Beckford et al., 1985) .
T174 40549-40815 Sentence denotes MeV has a persistent and long latency infection period, often resulting in the development of subacute sclerosing panencephalitis (SSPE) in males, causing fatal neurologic disease presenting itself many years following the original infection (Bellini et al., 2005) .
T175 40816-40913 Sentence denotes Adaptive cellular immune responses are generally regarded as most important for clearance of MeV.
T176 40914-41098 Sentence denotes Children with low plasma Ig may recover from MeV infection, while those with defects in cellular immunity develop progressive infections (Albertyn et al., 2011; Mcquaid et al., 1998) .
T177 41099-41326 Sentence denotes MeV-specific antibody and T cell responses coincide with the onset of the rash, whereby rash biopsies of MeV-replicating, infected epithelial cells, have high levels of CD4 þ and CD8 þ T cell infiltrates (Polack et al., 1999) .
T178 41327-41667 Sentence denotes CD8 þ T cell subsets appear to be particularly important for control and clearance of infectious MeV, where expanded circulating virus-specific CTLs are found in the blood of patients suffering rash, and increases in CD8 þ T cells are also found in MeV-induced pneumonias (Jaye et al., 1998; Mongkolsapaya et al., 1999; Myou et al., 1993) .
T179 41668-42134 Sentence denotes In addition, depending on the target tissue and cell type analyzed with regards to MeV infection, though differentially rated, both cytotoxicity and IFN production have been implicated as key effector mechanisms for MeV clearance (Patterson et al., 2002; Stubblefield Park et al., 2011; Finke et al., 1995) , with specific combinations of CD4 þ T cells, CD8 þ T cells, and B cells recorded as required for the control of primary MeV infection (Tishon et al., 2006) .
T180 42135-42220 Sentence denotes Protection against measles is based on MeV-specific humoral, antibodybased, immunity.
T181 42221-42454 Sentence denotes Diagnostically, the current gold standard of protection is via quantification of neutralizing antibodies against the viral hemagglutinin (H) and fusion (F) surface GPs (Bouche et al., 2002; Haralambieva et al., 2011; Plotkin, 2010) .
T182 42455-42653 Sentence denotes MeV, however, triggers an aggressive immune response, involving both the humoral and cellular arms of the immune system (Moss and Griffin, 2012; De Vries et al., 2012; Buchanan and Bonthius, 2012) .
T183 42654-42784 Sentence denotes Once measles has been cleared, it is memory T cells that can provide lifelong immunity against reinfection by MeV (Bester, 2016) .
T184 42785-43056 Sentence denotes Importantly, during MeV infection, immune reactions to other pathogens are suppressed from weeks to years, leading to risk and susceptibility to secondary infections, and which is believed to be a driver of complications and mortality long after measles had been cleared.
T185 43057-43376 Sentence denotes Conversely, this measlesinduced immune "amnesia," sometimes disabling immune memory for up to 3 years, has been suggested to work toward herd protection against other infections and is supported by the association of measles vaccination with lowered mortality rates from other childhood infections (Mina et al., 2015) .
T186 43377-43614 Sentence denotes Occasional spontaneous tumor regressions have also been observed to occur during natural measles infection, suggesting that MeV infection may be adopted in the generation of safe and effective oncolytic viruses (Russell and Peng, 2009 ).
T187 43615-43709 Sentence denotes Rubella virus belongs to the Togaviridae family and is the sole member of the Rubivirus genus.
T188 43710-43979 Sentence denotes Rubella contains a single-stranded, positive-sense RNA genome (Frey, 1994) , and its viral particles measure between 50 and 85 nm in diameter (Oshiro et al., 1969) and have a pleomorphic nucleocapsid surrounded by a host-derived lipid membrane (Battisti et al., 2012) .
T189 43980-44290 Sentence denotes The E1 and E2 rubella protein spikes are anchored to the external layer of the membrane, with membrane-bound E2 proteins bridging rows of E1 proteins, considered as the main immunodominant antigens responsible for controlling receptor-mediated endocytosis (Petruzziello et al., 1996; Katow and Sugiura, 1985) .
T190 44291-44461 Sentence denotes Antibody levels against the neutralizing domain of E1 correlate with protection against rubella virus (Mitchell et al., 1996; Cordoba et al., 2000; Wilson et al., 2006) .
T191 44462-44638 Sentence denotes Rubella virus is spread from person-to-person via the respiratory route and is the causative agent of rubella disease, commonly known as German measles (Lambert et al., 2015) .
T192 44639-44770 Sentence denotes Although rarer in the United States, rubella infection remains a major health concern in developing countries (Tosh et al., 2009) .
T193 44771-45084 Sentence denotes Although acquired rubella infection is not severe in adults, transplacental transfer of the virus to the developing fetus during maternal viremia can cause devastating consequences of congenital rubella syndrome (CRS) (Watson et al., 1998) , where more than 100,000 infants worldwide are born with CRS each year .
T194 45085-45278 Sentence denotes Common CRS symptoms include spontaneous abortion, premature delivery, fetal death, ocular abnormalities, neurological problems, abnormal cardiac development, and deafness (White et al., 2012) .
T195 45279-45531 Sentence denotes Congenital malformations due to CRS may be present at birth, while other conditions such as diabetes mellitus, deafness, intellectual disability, and/or subacute encephalitis may develop months to years later (Watson et al., 1998; White et al., 2012) .
T196 45532-45798 Sentence denotes From mass immunization programs, the number of rubella cases has progressively declined and was no longer endemic in the United States as of 2004 but remains endemic in other countries, with a dramatic increase in reported cases the last decade (Reef et al., 2011) .
T197 45799-46074 Sentence denotes Recently, Africa and Asian have seen 20-fold increases in rubella cases, representing a significant proportion of the over 121,000 global cases reported, but where neither of these regions has immunization policies in place to control rubella outbreaks (White et al., 2012) .
T198 46075-46293 Sentence denotes A recent, 2013 rubella epidemic in Japan reporting over 11,000 cases, with at least 13 CRS cases (Minakami et al., 2014) , has also served to demonstrate that partial vaccination strategies can lead to major outbreaks.
T199 46294-46563 Sentence denotes In this case, vaccination was only provided to young women, while outbreaks affected the adult male populationsda phenomenon which has also been observed in other countries applying such vaccination strategies (Paradowska-Stankiewicz et al., 2013; Janta et al., 2012) .
T200 46564-46809 Sentence denotes Once measles is cleared, memory T cells can provide lifelong immunity to MeV (Bester, 2016) , and distinct patterns of cellular immunity to rubella virus are observed and related to the time elapsed following vaccination (Lambert et al., 2015) .
T201 46810-47071 Sentence denotes Predominant biomarkers of early cellular measles immunity are characterized by an immunosuppressive phenotype, with increases in IL-10 and TNF-a and decreases in IFN-g and proliferative properties of circulating peripheral lymphocytes (Pukhalsky et al., 2003) .
T202 47072-47309 Sentence denotes Late immunity is shifted to predominantly proinflammatory cytokine profiles via increased concentrations of IL-6, granulocyte-macrophage colony-stimulating factor, and TNF-a, in combination with decreases in IL-10 (Dhiman et al., 2010) .
T203 47310-47746 Sentence denotes Human leukocyte antigens (HLAs), known to play critical roles in immune response to viruses, contribute to the heterogeneity of the immune response to rubella virus as a result of their polymorphic nature, whereby HLA class I and II polymorphisms restrict the available repertoire of rubella antigens presented to T cells and therefore influence the subsequent immune response (Mitchell et al., 1996; Ou et al., 1994 Ou et al., , 1998 .
T204 47747-48120 Sentence denotes Current efforts are placed on deciphering the immunogenetics of antirubella humoral and cell-mediated immune responses, with a focus on better understanding HLA polymorphisms toward the development of vaccine candidates that utilize constructs comprised of HLA-specific epitopes that can induce immunity across heterogenetic populations, reviewed in Lambert et al. (2015) .
T205 48121-48261 Sentence denotes Both natural infection and vaccines induce humoral and cellular immune responses conferring protection against rubella (Tosh et al., 2009) .
T206 48262-48611 Sentence denotes While humoral responses have been conventionally used to measure and record protective immunity in human populations, cellular immune responses are intrinsic to humoral immunity (Bautista-Lopez et al., 2000; Horstmann et al., 1985; Ovsyannikova et al., 2004; Nepom et al., 1997; Vesikari et al., 1975; Akaboshi et al., 2001; Farzaneh et al., 2003) .
T207 48612-48860 Sentence denotes Since its induction into healthcare systems, immunization with live attenuated rubella virus vaccine has been demonstrated to be safe and effective at preventing infection, CRS, and to interrupt endemic rubella transmission (Lambert et al., 2015) .
T208 48861-49253 Sentence denotes The live attenuated rubella vaccine strain RA27/3 has a proven track record for safety and immunogenicity efficacy (Hilleman et al., 1968; Plotkin, 1979) , where single doses have been demonstrated to potently induce humoral immunity and lifelong protection against infection, and where the vaccine has also been demonstrated to boost previously immunized persons (Diaz-Ortega et al., 2014) .
T209 49254-49529 Sentence denotes From their safety and efficacy, use of recombinant rubella vectors has also been tested toward enhancing immune responses against SIV and HIV epitopes, where increases in memory B cell repertoires have been observed upon re-exposure to rubella vectors (Virnik et al., 2013) .
T210 49530-49743 Sentence denotes Durable HIV-specific cellular immunity has been observed from rubella vector boosting, with cytotoxic antigenspecific responses by central and effector memory CD4 þ and CD8 þ T cell subsets (Rosati et al., 2015) .
T1 49744-49839 Sentence denotes VZV, also known as HHV-3, is a virus of the Varicellovirus genus from the Herpesviridae family.
T2 49840-49977 Sentence denotes Humans are its only vector (Hambleton and , where it specifically infects T cells, epithelial cells, and ganglia (Gershon et al., 2015) .
T3 49978-50245 Sentence denotes VZV viruses have diameters measuring up to 200 nm and are encoded by a linear double-stranded DNA genome consisting of approximately 125 kb and encoding at least 70 unique genes, with all but the exception of 6, having homologs in herpes simplex virus (Cohen, 2010) .
T4 50246-50438 Sentence denotes VZV virions are composed of the viral DNA, the capsid, the tegument surrounding the capsid, and the envelope surrounding the tegument and which incorporates the major viral GPs (Arvin, 1996) .
T5 50439-50549 Sentence denotes During lytic infection phases, VZV produces at least 12 GPs expressed on both virions and human cell surfaces.
T6 50550-50730 Sentence denotes During this process, and which is common to other herpesviruses, gene expression is believed to proceed in an orderly cascade of immediate early genes, early genes, and late genes.
T7 50731-50879 Sentence denotes During latent VZV infection, gene expression is restricted until reactivation for additional rounds of lytic infection (Gershon and Gershon, 2010) .
T8 50880-51249 Sentence denotes VZV has extraordinarily high transmission rates and is highly communicable via the airborne transmission route, with concentrated virus coming from vesicles shedding from skin lesions, leading to cell-free contagious airborne viruses, and as evidenced by the fact that infected children without skin lesions are not contagious (Tsolia et al., 1990; Chen et al., 2004) .
T9 51250-51324 Sentence denotes Primary VZV infection causes varicella, also commonly known as chickenpox.
T10 51325-51756 Sentence denotes As cellular immunity to VZV wanes in the elderly and immunocompromised populations, latent VZV becomes reactivated and causes zoster (i.e., shingles, herpes zoster), which is usually associated with chronic pain but also numerous other serious neurological and ocular disorders, as well as multiple visceral and gastrointestinal disorders, including ulcers, hepatitis, and pancreatitis (Gershon et al., 2015; Gilden et al., 2010) .
T11 51757-51917 Sentence denotes Available antiviral drugs and vaccines against varicella and zoster are safe and effective for treatment and prevention strategies (Gershon and Gershon, 2010) .
T12 51918-52032 Sentence denotes Varicella is globally endemic and is transmitted year-round, with frequent epidemics occurring every 2 to 3 years.
T13 52033-52264 Sentence denotes Outbreaks most commonly occur in nurseries and schools, in hospitals and other medical institutions, and in refugee camps and military and correctional facilities (Izurieta et al., 1997; Levy et al., 2003; Longfield et al., 1990) .
T14 52265-52546 Sentence denotes Although it can often be a self-limiting disease, varicella can also result in death, where in developed countries, an estimated 5 of 1000 patients are hospitalized with serious complications, with up to three deaths per 100,000 patients (Galil et al., 2002; Rawson et al., 2001) .
T15 52547-52800 Sentence denotes Complications from varicella requiring hospitalization include bacterial superinfections of the skin, blood, bones, and lungs, as well as encephalitis and hemorrhagic manifestations in pediatric and immunocompromised populations (Gershon et al., 2015) .
T16 52801-52928 Sentence denotes Importantly, acquiring VZV during early pregnancy often results in severe congenital defects in 1% of newborns (Enders, 1984) .
T17 52929-53149 Sentence denotes VZV is a great example of success through herd vaccination programs for children, dramatically influencing its epidemiology, and causing 95% declines of hospitalization cases in the United States (Gershon et al., 2015) .
T18 53150-53369 Sentence denotes Following its transmission to the respiratory mucosa, VZV proliferates in the oral pharynx, where it infects human tonsillar activated memory CD4 þ T cells and induces their tissue-homing properties (Sen et al., 2014) .
T19 53370-53579 Sentence denotes VZV can be propagated to T cellerich regional lymph nodes for rapid proliferation and is then disseminated by the circulation to infect dermis, epidermis, and other organs (Ku et al., 2002 (Ku et al., , 2004 .
T20 53580-53763 Sentence denotes Lymphopenia is typically observed in patients during viral incubation, followed by an increase in leukocyte counts, correlating with the onset of rash until the resolution of viremia.
T21 53764-54039 Sentence denotes During infection, VZV can be recovered from PBMCs in children exhibiting rash (Ozaki et al., 1984; Koropchak et al., 1992; Sawyer et al., 1992) , is extensively observed in thymic lymphocytes (Levin, 2014) , and observed in all T cell subsets examined (Moffat et al., 1995) .
T22 54040-54280 Sentence denotes Though innate skin immunity can cause delays in multiplication of skin-bound VZV while the adaptive immune system mounts an attack, however, aggressive VZV replication in the skin results in characteristic varicella rash (Ku et al., 2004) .
T23 54281-54399 Sentence denotes High VZV titre-skin vesicles from rash provide cell-free virus for person-to-person transmission (Chen et al., 2004) .
T24 54400-54544 Sentence denotes VZV also latently infects neurons of cranial nerve ganglia, dorsal root ganglia, and enteric and autonomic ganglia (Gershon and Gershon, 2010) .
T25 54545-54932 Sentence denotes VZV reactivation causes ganglia to become necrotic and hemorrhagic (Head et al., 1997) , with VZV proteins found in neurons and non-neuronal cells, and where this VZV-induced ganglionitis is often also marked by the upregulation of MHC class I and II proteins associated infiltration of CD4 þ and CD8 þ T cells (Schmidbauer et al., 1992; Steain et al., 2014; Gowrishankar et al., 2010) .
T26 54933-55054 Sentence denotes Before VZV vaccines became available, approximately 30% of infected adults later developed shingles (Yawn et al., 2007) .
T27 55055-55275 Sentence denotes The single dose, lyophilized, live, attenuated VZV vaccine (i.e., zoster vaccine live (Zvl), Zostavax, Merck) is indicated for prevention of latent VZV reactivation leading to shingles in individuals older than 50 years.
T28 55276-55610 Sentence denotes ZVL is licensed in over 55 countries, with 34 million distributed doses globally (Willis et al., 2017) , and which has associated efficacy rates of over 50% in all ages tested (Oxman et al., 2005; Schmader et al., 2012) ; consistent with original clinical trial datasets (Tseng et al., 2011; Langan et al., 2013; Marin et al., 2015) .
T29 55611-55870 Sentence denotes However, increases in VZV susceptibility have arisen due to increasing aging populations, and in immune-suppressed organ transplant recipients, chemotherapy patients, HIV-infected individuals, and those suffering from chronic illnesses (Forbes et al., 2014) .
T30 55871-56023 Sentence denotes In these patients, earlier exposure to exogenous VZV protects against shingles by boosting cellular immunity (Arvin et al., 1983; Thomas et al., 2002) .
T31 56024-56350 Sentence denotes The memory immune response following naturally acquired primary VZV infection is characterized by VZV IgG and IgA antibodies, as well as VZV-specific CD4 þ and CD8 þ T cells, where VZV-specific IgG antibodies bind many VZV proteins and mediate virus neutralization and antibodydependent cytotoxicity, reviewed in Arvin (2008).
T32 56351-56486 Sentence denotes The frequency of VZV-specific memory proliferating T cells is estimated to be approximately one in 40,000 PBMC (Hayward et al., 1986) .
T33 56487-56879 Sentence denotes VSV-specific memory cytotoxic MHC class I-or class II-restricted T cells producing IFN-g and TNF-a can recognize the VZV gE, gB, gC, gH, gi, Ie62, and IE63 proteins and can be found to persist for over 20 years after varicella exposure (Jenkins et al., 1998; Huang et al., 1992; Asanuma et al., 2000; Diaz et al., 1989; Hayward et al., 1986; Sharp et al., 1992; Sadzot-Delvaux et al., 1997) .
T34 56880-57319 Sentence denotes The ability of the live attenuated varicella vaccine to elicit VZV-specific IgG and T cell immunity in naive hosts was established during its prelicensing clinical evaluations (Gershon et al., 1992) , and where, as expected from its design, the magnitude of these VZV-specific immune responses correlated with infectious virus content and with antigen content of individual vaccine formulations (Bergen et al., 1990; Watson et al., 1993) .
T35 57320-57600 Sentence denotes Importantly, it was later discovered that providing two doses to children resulted in higher IgG antibody titres and increased T cell proliferation and where experimental evidence suggesting that memory responses were sustained more effectively from such regimens (Watson, 2008) .
T36 57601-57759 Sentence denotes These observations led to the more recent recommendation of implementing of a two-dose regimen of varicella vaccine for all vaccine recipients (Arvin, 2008) .
T37 57760-58069 Sentence denotes Studies of how regimens affect long-term protection by the adaptive T cell immune response to vaccination, as exemplified by VZV vaccination studies, have the potential to modify dosages and timelines to maximize overall and persisting beneficial long-term effects from vaccination against many other viruses.
T38 58070-58285 Sentence denotes Historically, smallpox was a severe human disease caused by the variola virus (VARV), which was both highly lethal and highly contagious prior to its eradication from human populations in 1980 (Moore et al., 2006) .
T39 58286-58484 Sentence denotes VARV belongs to the genus Orthopoxvirus of the family Poxviridae, which also includes zoonotic species: vaccinia virus (VACV), monkeypox virus, cowpox virus, and camelpox virus (Shchelkunov, 2013) .
T40 58485-58688 Sentence denotes Orthopoxviruses are enveloped, brick-shaped viruses measuring 350 by 270 nm, and containing a double-stranded DNA genomes encoding 150e200 genes, and measuring approximately 200 kb (Garon et al., 1978) .
T41 58689-58809 Sentence denotes Unlike other DNA viruses, these replicate as 'virus factories' in the cytoplasm of infected cells (Pauli et al., 2010) .
T42 58810-58962 Sentence denotes VARV encodes approximately 200 proteins, where over 80 of these are found at terminal regions of the genome and are associated with host immune evasion.
T43 58963-59182 Sentence denotes The origin of smallpox is unknown, but VARV is considered to be one of the most deadly diseases of human history, decimating populations to such an extent that it significantly altered the course of human civilizations.
T44 59183-59462 Sentence denotes Smallpox is believed to have first appeared in 10,000 BC in Africa, with the oldest credible confirmation found in Sanskrit writings from 1500 BC and where smallpox lesions are believed to be observed on the mummified Egyptian ruler Ramses V (1100 BC) (Ristanovic et al., 2016) .
T45 59463-59600 Sentence denotes Prior to its eradication in 1980, VARV circulated in the human population for many centuries and repeatedly caused large-scale epidemics.
T46 59601-59755 Sentence denotes In the 18th century for instance, smallpox caused the death of more than 400,000 Europeans per year (Babkin and Babkina, 2015; Smith and Mcfadden, 2002) .
T47 59756-59950 Sentence denotes Despite VARV eradication from the human population more than two decades ago, fears about its potential re-emergence or the threat of its use as a potential bioterrorism agent have not subsided.
T48 59951-60090 Sentence denotes This has led to numerous debates concerning the destruction of existing viral stocks, currently maintained in the United States and Russia.
T49 60091-60389 Sentence denotes Destruction of these stocks has been postponed for the benefit of further research elucidating VARV mechanisms of pathogenesis toward the design of therapeutics as well as on efficacious vaccine strategies that may be required for potential future outbreak (Smith and Mcfadden, 2002; Stone, 2002) .
T50 60390-60674 Sentence denotes Immune-evasion mechanisms by VARV are the least understood among the orthopoxviruses due to difficulties of finding an appropriate host animal model (Turner and Moyer, 2002) , along with limited availability of authentic variola proteins since its eradication (Massung et al., 1993) .
T51 60675-60892 Sentence denotes Thus only two variola proteins, namely smallpox inhibitor of complement enzymes (SPICE) and vaccinia virus complement control protein (VCP), have been characterized and are similar in structure (Dunlop et al., 2003) .
T52 60893-61210 Sentence denotes These viral antigens regulate the human complement system (Yadav et al., 2008) , are important for stimulating innate immunity, and also have important features for adaptive immunity, shown to bolster antiviral T cell responses including IFN and cytokine expression (Noris and Remuzzi, 2013; Moss and Shisler, 2001) .
T53 61211-61407 Sentence denotes VACV has been used more extensively for human immunization than any other vaccine and what was employed to provide cross-protection against VARV toward smallpox eradication (Jacobs et al., 2009 ).
T54 61408-61789 Sentence denotes The first generation VACV/VARV vaccines produced in the 1970s and 1980s (Dryvax, Apsv, LancyeVaxina, L-IVP) contained live VACV , and induced robust humoral immunity is characterized by high antibody titers, neutralizing and opsonizing viral particles, fixing complement, hemagglutination, and antibody-dependent cell cytotoxicity (Amanna et al., 2006; Panchanathan et al., 2008) .
T55 61790-62075 Sentence denotes These vaccines have since been observed to generate adaptive immune responses over many concentrations (Frey et al., 2002; Rock et al., 2006) , including the secretion of effector cytokines (e.g., IFN-g) and the lysing of infected cells (Amanna et al., 2006; Hammarlund et al., 2003) .
T56 62076-62245 Sentence denotes Most second-generation vaccines created for biodefense contain replication competent viruses (Artenstein and Grabenstein, 2008) and have comparable efficacies to Dryvax.
T57 62246-62413 Sentence denotes Thirdgeneration vaccine formulations using attenuated VACV strains (LC16m8, Mva, Nyvac, dVVL) have increased safety profiles (Artenstein, 2008; Kennedy et al., 2009) .
T58 62414-62837 Sentence denotes Proof that adaptive cellular immunity is essential in preventing the spread of VARV following immunization and in its generating overall protective immunity against smallpox comes from observations that individuals having T celledeficiency disorders suffered serious and sometimes fatal infections after vaccination, but that agammaglobulinemic children were not at risk of these adverse complications (Rock et al., 2006) .
T59 62838-63149 Sentence denotes VARV vaccine induces strong CD4 þ and CD8 þ T cell responses, peaking after immunization and then contracting to provide stable memory T cell populations that remain detectable for decades (Amanna et al., 2006; Hammarlund et al., 2003) and with memory CD4 þ T cells persisting the longest (Amara et al., 2004) .
T60 63150-63566 Sentence denotes Defects in cellular immunity lead to uncontrolled vaccinia infection (Lane et al., 1970) , where CD4 þ and CD8 þ T cells are able to prevent mortality of B celledeficient animals infected with VACV (Belyakov et al., 2003) and where CD4 þ T cells have the most protective overall effects (Xu et al., 2004) , and are essential for optimal CTL function and memory formation (Sun and Bevan, 2003; Kennedy et al., 2009) .
T61 63567-63782 Sentence denotes VACV-specific CD4 þ and CD8 þ T cells recognize a diverse array of viral proteins, and CD8 þ T cell epitopes are predominantly found in early, non-structural genes and transcription factors (Terajima et al., 2008) .
T62 63783-64128 Sentence denotes CD4 þ T cell epitopes are from late viral products including membrane, structural proteins, and replicative enzymes (Jing et al., 2008) , and linkage of B cell and CD4 þ T cell epitopes to VARV proteins suggests T helper celleB cell interactions are those required for generation of robust VACV-specific antibody responses (Sette et al., 2008) .
T63 64129-64269 Sentence denotes In humans, VARVspecific CD4 þ and CD8 þ T cells have been observed to persist for over 75 years following immunization (Rock et al., 2006) .
T64 64270-64594 Sentence denotes Exanthem disorders by viruses represent more than 70% of cases of combined fever and widespread rash in pediatric populations, and their correct diagnosis is especially critical for the distinguishing of benign versus lethal viral strain variations that can cause lifelong morbidities in children born from infected mothers.
T65 64595-64796 Sentence denotes MeV is transmitted via human respiratory routes, and despite vaccine availability, still causes 10% of African children mortalities, and severe risk of SSPE-derived fatalities years later in survivors.
T66 64797-64950 Sentence denotes Historically, in common with many other viruses, the gold standard diagnostic of protection is made by quantification of humoral neutralizing antibodies.
T67 64951-65143 Sentence denotes Adaptive cellular immune responses are, however, those most critical for MeV clearance, where MeV-specific T cell responses coincide with rashes densely infiltrated by CD4 þ and CD8 þ T cells.
T68 65144-65344 Sentence denotes Combinations of CD4 þ T cells, CD8 þ T cells, and B cells control primary infection, where CD8 þ T cells dominate for control and clearance, and memory T cells are able to provide lifelong protection.
T69 65345-65635 Sentence denotes MeV infection induces general longterm immunosuppression leading to vulnerability to other pathogens causing secondary infections, but this immunosuppression is believed, by some, to be simultaneously conferring herd protection and have been observed to induce spontaneous tumor regression.
T70 65636-65914 Sentence denotes Rubella virus infection has progressively declined from immunization programs but continues to be endemic in many countries, as a result of complete absence of or problematic or partial vaccination programs, still causing severe CRS cases in 100,000 infants worldwide, per year.
T71 65915-66043 Sentence denotes While humoral responses are conventionally used to measure protective immunity, it is adaptive immunity that confers protection.
T72 66044-66262 Sentence denotes Both natural infection and vaccination induce humoral and cellular immune responses, where memory T cells can provide lifelong immunity, with presence of cytolytic T cell biomarkers from vaccine-induced immunogenicity.
T73 66263-66373 Sentence denotes Vaccines in development can comprise HLA-specific epitopes inducing immunity across heterogenetic populations.
T74 66374-66529 Sentence denotes Since rubella vaccines can boost the previously immunized, their vectors are being investigated for use toward immunization programs for unrelated viruses.
T75 66530-66584 Sentence denotes VZV has extraordinarily high human transmission rates.
T76 66585-66874 Sentence denotes Primary VZV infection causes varicella, and before vaccination programs were initiated, would re-emerge from declines in adaptive immunity to cause zoster in 30% of in immunocompromised populations to cause the hospitalization of 1 of every 200 and the death of three per 100,000 patients.
T77 66875-66985 Sentence denotes VZV represents a poster child of herd vaccination programs that led to 95% declines in hospitalization events.
T78 66986-67083 Sentence denotes VZV infection rates are again on the rise in immunocompromised and immune-suppressed populations.
T79 67084-67254 Sentence denotes It infects human tonsillar activated memory CD4 þ T cells that home to the lymph to then infect CD4 þ and CD8 þ T cells, followed by a lymphopenia resolved at rash onset.
T80 67255-67355 Sentence denotes Innate immunity controls VZV spread until adaptive immunity develops to fully counter the infection.
T81 67356-67612 Sentence denotes VSV-specific memory CTLs persist 20 years after varicella exposure, and observations that increased T cell proliferation with better-sustained memory responses result from multiple booster doses of vaccine have caused modifications in vaccination programs.
T82 67613-67781 Sentence denotes Smallpox by VARV was one of the most deadly diseases in human history, causing more than 400,000 European casualties annually prior to its vaccine-mediated eradication.
T83 67782-67950 Sentence denotes Viral stocks are maintained from the necessity of developing new vaccines to counter potential future re-emergence of VARV from natural-or bioterrorism-derived sources.
T84 67951-68022 Sentence denotes Characterized variola proteins amplify and strengthen T cell responses.
T85 68023-68182 Sentence denotes First-generation VACV vaccine induced robust humoral immunity and ADCC, in addition to generating adaptive immune responses marked by cytokines and cell lysis.
T86 68183-68414 Sentence denotes VARV vaccine induces strong initial effector CD4 þ and CD8 þ T cell responses having B cell linkage, then contacting to generate stable memory populations of VARV-specific CD4 þ and CD8 þ T cells that can persist for over 75 years.
T87 68415-68541 Sentence denotes Accordingly, second-and third-generation vaccines created for biodefense are designed to stimulate adaptive cellular immunity.
T88 68542-68742 Sentence denotes Globally, liver cancer is the fifth most common of cancers, with an average of 374,000 cases per year, representing 7.2% of all cancers, and with mortality rates reflecting geographic incidence rates.
T89 68743-68865 Sentence denotes Almost 85% of liver cancers occur in developing countries, with over 20 of 100,000 individuals affected by these diseases.
T90 68866-69079 Sentence denotes Hepatocellular carcinoma (HCC) is the most common form of liver cancer, and approximately 80% of cases are associated with chronic infection by hepatitis B virus (HBV) or hepatitis C virus (HCV) (El-Serag, 2012) .
T91 69080-69245 Sentence denotes Hepatitis viruses are so named because they display hepatotropism by preferentially infecting hepatocytes to cause liver inflammation, also known as viral hepatitis.
T92 69246-69399 Sentence denotes Infection by HBV and HCV promotes liver cirrhosis in most affected, leading to the development of HCC in up to 30% of patients (Fattovich et al., 2004) .
T93 69400-69580 Sentence denotes Approximately 5% of the global population (350e400 million people) are chronically infected with HBV and strong correlations between HBV prevalence and HCC incidence and mortality.
T94 69581-69709 Sentence denotes Chronic HBV infection accounts for approximately 50% of HCC cases in adults and for all HCC cases in children (El-Serag, 2012) .
T95 69710-69932 Sentence denotes Hepatitis transmission is from person-to-person contact with infected blood or body secretions or by the fecal-oral route and involving at least five specific viruses, namely hepatitis A, B, C, D, and E viruses (Table 1) .
T96 69933-70322 Sentence denotes Infectious viral hepatitis is an important challenge to health worldwide: hepatitis A virus (HAV) and hepatitis E virus (HEV) are acute and endemic in many low-income countries, usually causing self-limiting hepatitis, whereas HBC and HCV also cause acute illness but usually lead to chronic and progressive liver fibrosis, cirrhosis, and an increased risk of HCC (Stanaway et al., 2016) .
T97 70323-70426 Sentence denotes HBV is controlled in adults but is chronically persistent from neonatal infection (Shin et al., 2016) .
T98 70427-70470 Sentence denotes Hepatitis viruses differ in their virology.
T99 70471-70543 Sentence denotes HBV is an enveloped DNA virus that belongs to the Hepadnaviridae family.
T100 70544-70857 Sentence denotes It contains a 3200 bp, partially double-stranded relaxed-circular DNA genome that is reverse transcribed via a pregenomic RNA intermediate and encodes four overlapping open reading frames, which are translated to produce viral core protein, surface proteins, reverse transcriptase, and HBx (Nguyen et al., 2008) .
T101 70858-71081 Sentence denotes Transmission of HBV results from exposure to infectious blood or body fluids containing blood, and HBV can integrate into the human genome, contributing to its genomic instability and ultimately to HCC (Zhao et al., 2016) .
T102 71082-71186 Sentence denotes HCV is also transmitted by infected blood; but unlike HBV, HCV does not integrate into the host genome .
T103 71187-71302 Sentence denotes HCV is also a positivestranded RNA virus but is classified in the Hepacivirus genus within the Flaviviridae family.
T104 71303-71416 Sentence denotes Its genome is 9.6 kb in length, includes an internal ribosome entry site, and encodes structural and NS proteins.
T105 71417-71525 Sentence denotes The structural proteins form the viral particle and include the core protein and the envelope GPs E1 and E2.
T106 71526-71749 Sentence denotes The NS proteins include the p7 ion channel, the NS2-3 protease, the NS3 serine protease and RNA helicase, the NS4A polypeptide, the NS4B and NS5A proteins, and the NS5B RNAdependent RNA polymerase (Moradpour et al., 2007) .
T107 71750-71846 Sentence denotes Hepatitis D virus (HDV) is also transmitted by contact with infected blood or other body fluids.
T108 71847-72056 Sentence denotes HDV is an enveloped, negative sense, singlestranded, closed circular RNA virus, and requires HBV coinfection for its propagation, where infection with both viruses commonly results in severe liver pathologies.
T109 72057-72211 Sentence denotes HDV genomic RNA of HDV is composed of approximately 1700 bp, packaged with approximately 200 molecules of hepatitis delta antigen to form viral particles.
T110 72212-72347 Sentence denotes HDV envelope surrounding its genome and HDAg protein is composed of the three HBV small, medium, and large HBV HBsAg envelope proteins.
T111 72348-72497 Sentence denotes HDV also does not encode its own replicase or polymerase, and rather utilizes host cellular machineries for its replication (Abbas and Afzal, 2013) .
T112 72498-72744 Sentence denotes HAV and HEV are positive-stranded nonenveloped RNA viruses transmitted via the fecal-oral route, and unlike chronically persisting HBV and HCV, are typically cleared after acute infection of immunocompetent individuals (Park and Rehermann, 2014).
T113 72745-72841 Sentence denotes HAV is a hepatotropic virus belonging to the Hepatovirus genus within the Picornaviridae family.
T114 72842-73036 Sentence denotes Its genome consists of approximately 7500 bp and encompasses a single open reading frame coding for a single polyprotein, which is post-translationally processed into structural and NS proteins.
T115 73037-73170 Sentence denotes The structural proteins of HAV are divided into the polypeptides VP1, VP2, VP3, and VP4, forming the icosahedral capsid of the virus.
T116 73171-73301 Sentence denotes NS proteins 2B, 2C, 3A, 3B, 3C, and 3D are involved in RNA replication and viral polyprotein processing (Martin and Lemon, 2006) .
T117 73302-73563 Sentence denotes HEV of the family Hepeviridae and genus Orthohepevirus has a 7.2 kb genome having three opening reading frames encoding for the viral replicase, the capsid protein, and a small phosphoprotein required for the secretion of viral particles (Debing et al., 2016) .
T118 73564-73847 Sentence denotes HAV and HEV are waterborne viruses that usually cause acute hepatitis without progressing to chronic liver disease (Joon et al., 2015) , where annually, over 100 million cases of HAV and 28 million cases of HEV infections have been recorded globally (Makiala-Mandanda et al., 2017) .
T119 73848-73962 Sentence denotes HEV outbreaks are reported in Africa nearly every year, with some involving over 10,000 cases (Kim et al., 2014) .
T120 73963-74097 Sentence denotes HAV is highly endemic in Africa, infecting most children, conferring long-term immunity to reduce serious epidemics (Jacobsen, 2014) .
T121 74098-74479 Sentence denotes Hbv, Hcv, and HDV can be sexually, parenterally, or vertically transmitted and usually evolve into chronic hepatitis, liver cirrhosis, and HCC causing high morbidity and mortality rates, where globally, over 350 million people are chronically infected with HBV, 150 million with HCV, and 15 million with HDV (Kramvis and Kew, 2007; Hughes et al., 2011; Thursz and Fontanet, 2014) .
T122 74480-74677 Sentence denotes Superinfection of HBV patients with HDV frequently accelerates the progression of HBV disease to liver cirrhosis, considerably increasing the burden of chronic liver disease (Hughes et al., 2011) .
T123 74678-74972 Sentence denotes HAV, HBV and HCV are responsible for the majority of viral hepatitis cases, and there are similarities and differences in immune responses to infections by these three viruses, possibly explaining the distinct disease courses and outcomes of each hepatitis virus infection (Shin et al., 2016) .
T124 74973-75320 Sentence denotes Type I and III IFNs, major components of the antiviral innate immune system, induce the expression of IFN-stimulated genes (ISGs), observed to be much more highly induced by HCV than HAV, and not at all by HBV, indicating that this virus is not recognized by the innate immune system (Su et al., 2002; Lanford et al., 2011; Wieland et al., 2004) .
T125 75321-75560 Sentence denotes Another component of the innate immune system, NK cells, are also believed to be responsible for protection against HCV, where increased NK cells in protected individuals coincide with increased IFN-g and cytotoxicity (Shin et al., 2016) .
T126 75561-75712 Sentence denotes Though virus-specific antibodies are produced by all viral hepatitis infections, these have differing roles according to the hepatitis virus infection.
T127 75713-75915 Sentence denotes HAV-specific antibodies with virus-neutralizing activity are induced by natural infection and vaccine immunization and confer lifelong protective immunity (Walker et al., 2015; Martin and Lemon, 2006) .
T128 75916-76131 Sentence denotes HBV surface antigen HBsAg-specific antibodies are induced by infection and immunization with the recombinant protein and have virus-neutralizing activity conferring protective immunity (Guidotti and Chisari, 2006) .
T129 76132-76421 Sentence denotes HCV-specific antibodies produced after infection do not offer long-term protection as these do not persist, are subject to loss of neutralizing activity from virus mutation, and are ineffective for cellto-cell HCV transmission (Takaki et al., 2000; Dowd et al., 2009; Timpe et al., 2008) .
T130 76422-76644 Sentence denotes T cells play critical roles during acute HCV and HBV infections, where robust and multiple epitope-specific CD8 þ T cell responses are assisted by CD4 þ T cells for spontaneous resolution of infection (Shin et al., 2016) .
T131 76645-76852 Sentence denotes This is supported by observations that the depletion of CD4 þ or CD8 þ T cells in chimpanzees delays rapid clearance and recovery from infection by these viruses (Grakoui et al., 2003; Thimme et al., 2003) .
T132 76853-76978 Sentence denotes When HCV and HBV infections become chronically persistent, virus-specific T cells become exhausted and functionally impaired.
T133 76979-77202 Sentence denotes In acute HCV infection, virus-specific T cells are only detected in the blood and liver after 8 weeks postinfection, and their appearance coincides with large declines of virus titres Shin et al., 2006 Shin et al., , 2011 .
T134 77203-77555 Sentence denotes HBV virusespecific T cell responses are also important for spontaneous resolution of HBV infection, where their responses are observed to be vigorous, broad, and polyclonal in patients resolving primary infections and where their absences are associated with prolonged infection and delayed viral clearance (Chisari et al., 2010; Thimme et al., 2003) .
T135 77556-77839 Sentence denotes CD8 þ T cells also play important roles in HAV infection, where these have been observed to target multiple epitopes of HAV, despite more recent results suggesting that HAV is controlled by virus-specific CD4 þ T cells and not CD8 þ T cells (Walker et al., 2015; Shin et al., 2016) .
T136 77840-78007 Sentence denotes Finally, hepatitis virus infection results in liver injury, not directly caused by these viruses but rather by immunemediated mechanisms (Guidotti and Chisari, 2006) .
T137 78008-78525 Sentence denotes Liver injury biomarkers correlate with acute Hav, Hab, and HAC infection (Guidotti and Chisari, 2006; Park and Rehermann, 2014; Walker et al., 2015) and may result from cytotoxic activity of CD8 þ T cells, believed to induce apoptosis of hepatocytes in close proximity to their targeted cells (Guidotti and Chisari, 2006) , by IL-22 producing Th17-differentiated T cells, and by recruitment of nonspecific mononuclear cells by HBVspecific cytokine secreting CD8 þ T cells (Iannacone et al., 2007; Shin et al., 2016) .
T138 78526-78722 Sentence denotes Effective vaccines controlling HAV and HBV have been available for over 2 decades, and an HEV vaccine has also been licensed for use in China since 2011 (Zhu et al., 2010; Stanaway et al., 2016) .
T139 78723-78896 Sentence denotes Neonatal HBV vaccination has proven to be highly effective in inducing protective antibodies and preventing perinatal and horizontal transmission of HBV (Lee et al., 1991) .
T140 78897-79110 Sentence denotes However, observations that HBsAg-specific IFN-g-or IL-5-secreting PBMCs are absent in many adolescents suggest that booster vaccines should be administered to provide continued HBV immunization (Lu et al., 2008) .
T141 79111-79263 Sentence denotes HAV vaccination provides long-term immunity in the general population and in immunocompromised patients infected with HIV (Crum-Cianflone et al., 2011).
T142 79264-79471 Sentence denotes There is no existing vaccine for HCV, despite ongoing efforts toward their design and testing for their ability to generate prolonged cellular and humoral immune responses, reviewed in Naderi et al. (2014) .
T143 79472-79696 Sentence denotes In the absence of a vaccine, progress in HCV treatment includes oral treatments achieving cure in most patients, including those previously considered as difficult to treat cases (Poordad et al., 2013; Lawitz et al., 2013) .
T144 79697-79846 Sentence denotes Liver cancer is the fifth most common cancer, representing 7.2% of all cancers, with 374,000 annual cases from which 20 in 100,000 mortalities occur.
T145 79847-80024 Sentence denotes HCC is the most common liver cancer, with 80% of cases resulting from chronic infection by HBV or HCV, with a significant 350 and 150 million chronically infected, respectively.
T146 80025-80175 Sentence denotes In contrast, HAV and HEV cause acute hepatitis but do not progress to chronic liver diseases, and HDV infection depends on pre-existing HBV infection.
T147 80176-80310 Sentence denotes HCV induces the expression of type I and III ISGs and NK cells, not at all present from HBV infection unrecognized by innate immunity.
T148 80311-80427 Sentence denotes Virus-specific antibodies are produced by all viral hepatitis infections but have differing roles across infections.
T149 80428-80598 Sentence denotes Robust and multiple epitope-specific CD8 þ T cell responses and dominant but depend on assistance from CD4 þ T cells for resolution of acute Hav, Hbv, and HCV infections.
T150 80599-80740 Sentence denotes In chronic infections, cytolytic T cells either cause extensive liver injury to hepatocytes and/or become tolerant and functionally impaired.
T151 80741-80814 Sentence denotes Effective vaccines controlling HAV and HBV provide protective antibodies.
T152 80815-80966 Sentence denotes HAV vaccination provides longterm immunity to the immunocompromised, but booster vaccination programs are required for persistence of HBV immunization.
T153 80967-81151 Sentence denotes No vaccine is licensed for highly variable and rapidly mutating HCV, despite numerous ongoing efforts to generate those which will provide robust cellular and humoral immune responses.
T154 81152-81369 Sentence denotes Historically, the central nervous system (CNS) has been considered to be an immunologically privileged site within the body (Bailey et al., 2006; Galea et al., 2007; Engelhardt, 2008; Prendergast and Anderton, 2009 ).
T155 81370-81727 Sentence denotes By definition, immunologically privileged sites, also including the brain, cornea, testis, and pregnant uterus, have a reduced or delayed ability to reject foreign tissue grafts compared with conventional sites within the body, such as skin (Streilein, 2003; Bailey et al., 2006; Carson et al., 2006; Mrass and Weninger, 2006; Kaplan and Niederkorn, 2007) .
T156 81728-81872 Sentence denotes Though the CNS is protected by a highly complex barrier system, a wide variety of viruses still manage to gain access to it and induce diseases.
T157 81873-82055 Sentence denotes Due to their sizes and tissue penetration strategies, the number of CNS viral infections outweigh bacterial, fungal, and protozoa CNS infections combined (Romero and Newland, 2003) .
T158 82056-82320 Sentence denotes Following CNS infection, inflammatory events can arise in distinct anatomical regions such as the meninges (meningitis), brain (encephalitis), and spinal cord (myelitis) or can also simultaneously arise in multiple regions (meningoencephalitis, encephalomyelitis).
T159 82321-82451 Sentence denotes For many neurotropic viruses, viral cytopathology plays a major role in CNS dysfunction, reviewed in Swanson and Mcgavern (2015) .
T160 82452-82787 Sentence denotes Virus can breach the protective barriers of the CNS in many ways, with the main route mechanism being via the blood, where inhaled or ingested viruses can move past the mucosa to establish infection in secondary lymphoid tissues and later be shed into circulating blood to cause broad systemic infections (Swanson and Mcgavern, 2015) .
T161 82788-83003 Sentence denotes The CNS parenchyma is protected from a plethora of agents carried in the circulation via an elaborate network called the blood-brain barrier (BBB) and the blood-cerebrospinal fluid barrier (Ransohoff et al., 2003) .
T162 83004-83266 Sentence denotes Viruses have evolved and adapted to overcome these barriers (Mcgavern and Kang, 2011) , where some viruses can infect vascular endothelial cells, permitting direct passage across the BBB into the CNS (Verma et al., 2009; Moses et al., 1993; Coyne et al., 2007) .
T163 83267-83436 Sentence denotes In addition, parts of the CNS that are not completely protected by the BBB permit more rapid entry of several viruses (Van Den Pol et al., 1999; Wolinsky et al., 1974) .
T164 83437-83618 Sentence denotes Infected hematopoietic cells in circulating blood can also serve as "Trojan horses" that can transport undetected virus into the CNS (Clay et al., 2007; Tabor-Godwin et al., 2010) .
T165 83619-83895 Sentence denotes Other mechanisms can include systemic viral infections leading to massive systemic inflammation and an ensuing BBB breakdown which opens the floodgates to CNS infection by a variety of otherwise restricted infectious agents (Arsenio-Nunes et al., 1975; Eugenin et al., 2006) .
T166 83896-84368 Sentence denotes There are more than 30 recognized distinct virus strains that cause human neurological disease, and the majority of documented cases are caused by viruses that are transmitted to humans by blood-eating arthropod vectors, also known as arboviruses, that are mainly transmitted by mosquitoes and ticks and include polioviruses (PVs), alphaviruses, mosquito-borne flaviviruses, tick-borne orthobunyaviruses, mosquito-borne mammarenaviruses, and rabies virus (RABV; Table 1 ).
T167 84369-84513 Sentence denotes PV, the causative agent of poliomyelitis, more commonly referred to as polio, is a human enterovirus and member of the family of Picornaviridae.
T168 84514-84808 Sentence denotes Typically spherical, nonenveloped picornaviruses range in diameter between 27 and 30 nm and have a positive-strand RNA of 7000e9000 nucleotides, translated into a polyprotein (i.e., VP4-VP2-VP3-VP1-2A-2B Poliovirus 2C-3A-3B-3C-3D), which yields 11 proteins upon its cleavage by viral proteases.
T169 84809-85028 Sentence denotes Picornavirus replication occurs in the cytoplasm of infected cells in association with intracellular membranes, where virions are released by cell lysis, ultimately killing cells and causing extensive damage to tissues.
T170 85029-85186 Sentence denotes The host immune response against picornaviruses includes cytokine release, antibody production, and CTL activation, reviewed in Dotzauer and Kraemer (2012) .
T171 85187-85411 Sentence denotes The viral genome of PV is a single-stranded RNA of approximately 7500 nucleotides, enclosed in a nonenveloped capsid comprising 60 copies of four different polypeptides arranged with icosahedral symmetry (Racaniello, 2006) .
T172 85412-85762 Sentence denotes All three PV serotypes cause paralytic disease, and CD155 is the cellular receptor for all three serotypes, whereby PV interaction with CD155, expressed by many different cell types, leads to a conformational change of the virus particle and the following release of the RNA genome into the cellular cytoplasm (Mendelsohn et al., 1989; Hogle, 2002) .
T173 85763-85874 Sentence denotes Once in the cytoplasm, the viral RNA genome is translated, and the production of new infectious virions begins.
T174 85875-85999 Sentence denotes PV infection results from ingested virus that replicates in the oropharyngeal and intestinal mucosa (Sabin and Ward, 1941) .
T175 86000-86173 Sentence denotes From the primary sites of multiplication in the mucosa, PV virus drains into cervical and mesenteric lymph nodes and then into the blood, causing transient viremia symptoms.
T176 86174-86252 Sentence denotes The person-to-person transmission of PV virus is through the fecal-oral route.
T177 86253-86441 Sentence denotes Once PV is shed in the feces, the majority of the natural human infection ends at this stage with a modest symptoms including sore throat, fever, and malaise (Dotzauer and Kraemer, 2012) .
T178 86442-86780 Sentence denotes However, in 1%e2% of PV-infected individuals, the virus gains entry to the CNS through neurons at neuromuscular junctions (NMJs) and replicates in motor neurons within the spinal cord, brain stem, or motor cortex and leads to the PV-characteristic flaccid muscle paralysis disorder poliomyelitis (Racaniello, 2006; Koyuncu et al., 2013) .
T179 86781-86862 Sentence denotes Approximately 10% of these paralytic cases result in death (Roush et al., 2007) .
T180 86863-87067 Sentence denotes Following both PV infection and vaccination, neutralizing antibodies are generated to clear the virus, and these can be detected for many years, providing lifelong protection (Libbey and Fujinami, 2014) .
T181 87068-87356 Sentence denotes Vaccination with the injected inactivated PV vaccine prevents viral spread to the CNS, whereas vaccination with the live-attenuated oral PV vaccine protects against infection of the intestinal tract and also prevents person-to-person spread of the virus (Nathanson, 2008; Griffin, 2010) .
T182 87357-87539 Sentence denotes PV remains an important cause of neurologic disease as the three live-attenuated vaccine strains are at risk of recombining their genomes to revert to virulent form (Griffin, 2010) .
T183 87540-87716 Sentence denotes PV is endemic in Afghanistan, Pakistan, India, and Nigeria, where political reasons, in part, are the most significant modality toward achieving PV eradication via vaccination.
T184 87717-87775 Sentence denotes PV can usually be cleared by the adaptive immune response.
T185 87776-87994 Sentence denotes Under conditions of antibody deficiencies in humans, however, continuous fecal shedding of PV contributes to the establishment of persistent infection cycles (Martin, 2006; Nathanson, 2008; Libbey and Fujinami, 2014) .
T186 87995-88314 Sentence denotes Though less is known about the roles of adaptive T cell responses in controlling PV infections relative to that of neutralizing antibody responses, it is known that PV-specific CD4 þ T cells are induced in vaccinated individuals, where key epitopes have also been identified (Graham et al., 1993; Simons et al., 1993) .
T187 88315-88711 Sentence denotes The induction of PV-specific CD4 þ T cells has been suggested to be the result of stimulating by PV-infected DCs and macrophages (Wahid et al., 2005; Dotzauer and Kraemer, 2012) , where it has been demonstrated that HLA class II presentation remains intact in infected, antigen-presenting cells (APCs), and that cytolytic CD4 þ T cells produce IFN-g to lyse PV-infected cells for virus clearance.
T188 88712-89001 Sentence denotes PV-specific cytotoxic, IFN-g-secreting cytotoxic CD8 þ T cell responses induced by infected macrophages have also been documented (Wahid et al., 2005) , suggesting that both CD4 þ and CD8 þ cytolytic T cells partake in the adaptive immune reaction against PV (Dotzauer and Kraemer, 2012) .
T189 89002-89349 Sentence denotes Approximately 73 viruses are included in the Flavivirus genus of the Flaviviridae family of viruses, with 40 of its species associated with dengue, yellow fever (YF), Japanese encephalitis (JE), tick-borne encephalitis, and West Nile encephalitis as the most important arboviruses causing extensive global morbidity and mortality (Diamond, 2003) .
T190 89350-89569 Sentence denotes Flaviviruses are enveloped viruses with single-stranded RNA genomes that are translated in the cytoplasm to generate a single polyprotein that is then cleaved into structural and NS proteins by virus and host proteases.
T191 89570-89790 Sentence denotes The various encoded viral proteins assemble to generate the capsid, the envelope for receptor binding, membrane fusion and viral assembly, and the transmembrane proteins (prM) that assist in protein folding and function.
T192 89791-89947 Sentence denotes The entry of flaviviruses into their target cells is mediated by the interaction of the E GP with host cell surface receptors (Perera-Lecoin et al., 2013) .
T193 89948-90342 Sentence denotes Flaviviruses are believed to evade the immune system to enter the brain and spinal cord via circulating blood (Johnson and Mims, 1968) , where these may cross the BBB by passive transport across the endothelium, by active replication in endothelial cells, or by a "Trojan horse" mechanism, where virus hides in inflammatory cells during their transit into the brain (Solomon and Vaughn, 2002) .
T194 90343-90524 Sentence denotes IFN-dependent and complement system innate immune responses, along with humoral neutralizing antibodies, protect against virus dissemination and spread, reviewed in Diamond (2003) .
T195 90525-90846 Sentence denotes Adaptive cellular immunity is also important toward the destruction of infected cells, whereby virus-specific CTLs become activated, proliferate, and release inflammatory cytokines following exposure to flavivirus-infected cells (Kesson et al., 1987; Kurane et al., 1989a; Liu et al., 1989; Murali-Krishna et al., 1996) .
T196 90847-91011 Sentence denotes There is also evidence that flavivirus replication is enhanced by myeloid cells, as observed for dengue, YF, West Nile, tick-borne, and JE viruses (Diamond, 2003) .
T197 91012-91225 Sentence denotes The JE flavivirus is the leading cause of encephalitis and is amplified by waterfowl and only transmitted to humans by mosquito vectors, with no possibility of human-to-human transmission (Erlanger et al., 2009) .
T198 91226-91325 Sentence denotes Pediatric and geriatric populations are at higher risk of infection by JE (Burchard et al., 2009) .
T199 91326-91513 Sentence denotes While 99% of JE infections remain asymptomatic, JE can be devastating in symptomatic patients, causing mortality rates of 30% in these patient populations (Batchelor and Petersen, 2015) .
T200 91514-91734 Sentence denotes After approximately 14 days of JE incubation, these patients suffer from high fever, chills, headache, myalgia, and confusion, where pediatric patients also have symptoms of gastrointestinal pain, vomiting, and seizures.
T201 91735-91854 Sentence denotes Post-JE infection, handicaps from persistent neurological deficits can last a lifetime in up to 50% of these survivors.
T202 91855-91996 Sentence denotes As there is no treatment against JE, the only method of prevention is avoidance of mosquitos and vaccination (Batchelor and Petersen, 2015) .
T203 91997-92524 Sentence denotes The four available JE vaccines are registered worldwide and used in national immunization programs for different age groups, including inactivated Vero cell culture vaccine (JE-VC) (IXIARO), inactivated mouse braine derived vaccine (JE-MB), a cell cultureederived (primary hamster kidney) live-attenuated vaccine based on the SA 14-14-2 strain manufactured in China, and a live-attenuated chimeric vaccine based on the genes of YF 17D backbone combined with Vero cellepropagated SA 14-14-2 strain (IMOJEV) (Chen et al., 2015) .
T204 92525-92742 Sentence denotes T cell responses to JE vaccination have been reported, where for SA14-14-2, T cell responses were detected in the majority following vaccination, and these cross-reacted with other flaviviruses (Turtle et al., 2017) .
T205 92743-92856 Sentence denotes JE-specific T cell responses are observed in PBMCs isolated from JE-infected patients and vaccinated individuals.
T206 92857-93091 Sentence denotes CD4 þ and CD8 þ T cells directed against structural viral proteins were identified in vaccinated individuals, in contrast to specific CD4 þ and CD8 þ responses against NS or C proteins in infected patients (Nathanson and Cole, 1971) .
T207 93092-93280 Sentence denotes These findings indicate that NS proteins, and especially NS3 have important roles in the initiation of T cell responses, as the main target of JE-specific T cellemediated immune responses.
T208 93281-93467 Sentence denotes In addition, cytolytic CD4 þ T cells clones that cross-reactive with other flaviviruses have been generated from individuals immunized with inactivated JE vaccine (Aihara et al., 1998) .
T209 93468-93627 Sentence denotes Finally, CD4 þ and CD8 þ and Th1 T cells are believed to be primary determinants of protection from JE infection (Kumar et al., 2004a (Kumar et al., , 2004b ).
T210 93628-93760 Sentence denotes Viruses from the Alphavirus genus are members of the Togaviridae family of viruses, a group of enveloped positive-sense RNA viruses.
T211 93761-93835 Sentence denotes These are mosquito-borne viruses causing two major types of human disease.
T212 93836-94101 Sentence denotes The Old World alphavirusesdSindbis, chikungunya, and Ross River virusdcause arthritis and arthralgia, while the New World alphavirusesdeastern (EEEV), western (WEEV), and Venezuelan equine encephalitis virus (VEEV)dcause encephalitis (Trobaugh and Klimstra, 2017) .
T213 94102-94268 Sentence denotes Alphaviruses are small, icosahedral-shaped, enveloped viruses and are approximately 70 nm diameter in size (Mancini et al., 2000; Morgan et al., 1961; Fuller, 1987) .
T214 94269-94610 Sentence denotes Alphavirus virions acquire host cell lipid membranes during viral assembly (Fuller, 1987; Acheson and Tamm, 1967; Vogel et al., 1986) , with 80 E1 and E2 viral GPs spike protrusions, arranged in an icosahedral pattern embedded within their membranes and interacting with nucleocapsid (Fuller, 1987; Vogel et al., 1986; Owen and Kuhn, 1997) .
T215 94611-95005 Sentence denotes Alphavirus single-stranded, positive-sense, RNA genomes are 12 kb long and consist of two large open reading frames encoding the NS and structural polyproteins that are subsequently cleaved by both viral and host proteases to create four NS proteins (nsP1 to 4) and five structural proteins (C, E3, E2, 6k, E1) (Strauss et al., 1984; Hardy and Strauss, 1989) ; reviewed in Leung et al. (2011) .
T216 95006-95213 Sentence denotes Of major concern are the New World EEEV, WEEV, and VEEV alphaviruses, which are naturally transmitted by mosquitos, but where VEEV is also highly infectious via the aerosol route (Zacks and Paessler, 2010) .
T217 95214-95504 Sentence denotes Precise mechanisms of entry of alphaviruses into the CNS remains elusive, however, once in, alphaviruses infect humans and equines neurons, causing neurologic symptoms from mild febrile illness to severe encephalitis resulting in death (Ramakrishna et al., 2002; Zacks and Paessler, 2010) .
T218 95505-95709 Sentence denotes Development of severe encephalitis is believed to result from neuronal cell death from accelerated viral spread and host neuroinflammatory viral responses (Paessler et al., 2006 (Paessler et al., , 2007 .
T219 95710-96036 Sentence denotes Antibodies are protective against lethal meningoencephalitis when the virus is transmitted by insects, and virus-specific CD4 þ T cells are found to be important for protection from lethal meningoencephalitis from aerosol transmission routes (Paessler et al., 2007; Yun et al., 2009) ; reviewed in Libbey and Fujinami (2014) .
T220 96037-96149 Sentence denotes VEEV remains an emerging disease threat by natural transmission as well as via its usage as a biological weapon.
T221 96150-96349 Sentence denotes Of the New World alphaviruses, VEEV is the most important human and equine pathogen, it having caused outbreaks of febrile and neurological disease primarily in Latin America during the past century.
T222 96350-96628 Sentence denotes Past outbreaks have lasted several years and have involved up to 100,000 equine and human cases over large geographical regions, with the largest outbreaks on record were from the 1960s, where central Colombia saw over 200,000 human cases and an estimated 100,000 equine deaths.
T223 96629-96765 Sentence denotes More recent outbreaks in Mexico and South America are behind the classification of VEEV as a re-emerging disease (Weaver et al., 2004) .
T224 96766-96998 Sentence denotes Because VEEV can also be developed as a biological weapon amenable to use in warfare or terrorism, current global emphases on biological defenses have renewed interest in its virology (Hawley and Eitzen, 2001; Weaver et al., 2004) .
T225 96999-97147 Sentence denotes VEEV infection in humans typically causes nonlethal, incapacitating symptoms including fever, headache, malaise, myalgia, sore throat, and vomiting.
T226 97148-97479 Sentence denotes Up to 4% of rarer cases of CNS involvement usually follow acute febrile phases, with associated severities of neurological disease ranging from somnolence and mild confusion, to seizures, ataxia, paralysis, and coma, with mortality rates ranging as high as 35% in infected children and 10% in infected adults (Bowen et al., 1976) .
T227 97480-97654 Sentence denotes VEEV has also been reported to cause long-term neurological deficits, abortions, and teratogenic effects (De La Monte et al., 1985; Rivas et al., 1997; Weaver et al., 1996) .
T228 97655-98092 Sentence denotes Like VEEV, though the majority of human infections with EEEV are asymptomatic, CNS involvement results in severe neurological signs, lesions, and sequelae, with an estimated associated human mortality rate of 75%, and with its neurological manifestations including facial edema, paresis, paralysis, respiratory impairment, altered mental state, and seizures in children, many of these symptoms persisting long-term in surviving patients.
T229 98093-98233 Sentence denotes In fatal cases of EEEV, gross lesions in the brain include edema, meningeal congestion, hemorrhage, and malacia (Deresiewicz et al., 1997) .
T230 98234-98372 Sentence denotes As with VEEV and EEEV, natural human cases of WEEV typically show an early, flu-like illness with associated fever, malaise, and headache.
T231 98373-98539 Sentence denotes Similar to EEEV, WEEV results in CNS involvement in a significant proportion of cases, including symptoms of somnolence, seizures, coma, and motor neuron dysfunction.
T232 98540-98628 Sentence denotes Ninety percent of infants infected with WEEV have severe CNS symptoms (Calisher, 1994) .
T233 98629-98792 Sentence denotes Human mortality rates from WEEV infection range from 3% to 15%, and neurological sequelae may become permanent features in survivors (Steele and Twenhafel, 2010) .
T1 98793-99091 Sentence denotes Alphavirus expression vectors based on Sindbis, Semliki Forest, and VEEV have been demonstrated to induce strong CD8 þ T cell responses against their antigens (Rayner et al., 2002; Lundstrom, 2002 Lundstrom, , 2003 Riezebos-Brilman et al., 2006; Schlesinger and Dubensky, 1999; Polo et al., 2000) .
T2 99092-99193 Sentence denotes Both innate and adaptive immune responses can control viruses targeting CNS neurons (Griffin, 2003) .
T3 99194-99416 Sentence denotes Viral disruption of the type I IFN signaling pathways interferes with survival from VEEV, as well as of those infected with Sindbis and West Nile viruses (Ryman et al., 2000; Samuel and Diamond, 2005; White et al., 2001) .
T4 99417-99588 Sentence denotes Virus-specific antibody responses are critical in limiting viral spread and facilitating clearance of infectious virus from neurons within the brain Levine et al., 1991) .
T5 99589-99739 Sentence denotes Both alpha beta (ab) and gamma delta (gd) T cell responses have been demonstrated as being important for the control of VEEV (Paessler et al., 2006) .
T6 99740-100000 Sentence denotes T cell responses reduce mortality rates by direct killing of infected cells, producing antiviral cytokines and increasing production of virusspecific antibodies (Bilzer and Stitz, 1994; Patterson et al., 2002; Shrestha et al., 2006; Sitati and Diamond, 2006) .
T7 100001-100145 Sentence denotes VEEV replicon particles delivered as an adjuvant have been demonstrated to induce activation of CD8 þ T cell responses (Thompson et al., 2008) .
T8 100146-100565 Sentence denotes More recently, T cells have been demonstrated to facilitate recovery from VEEV-induced encephalomyelitis in absence of antibodies, responsible for dramatic reduction in viral titres in CNS, where CD4 þ T cells were the best T cell producers of IFN-g response and were more efficient at controlling VEEV in CNS lesions than CD8 þ T cells, facilitating recovery from severe viral encephalomyelitis (Brooke et al., 2010) .
T9 100566-100822 Sentence denotes Commercial equine vaccines marketed in the United States are generated with inactivated TC-83, which produces viremia, fever, and leukopenia in horses but generates robust neutralizing antibodies and VEEV protection from rechallenge (Walton et al., 1972) .
T10 100823-101116 Sentence denotes U.S. army special immunization programs provide inactivated C-84 to individuals failing to seroconvert in response to TC-83 boosters (Pittman et al., 1996) ; however, neither of these vaccines can be shown to completely protect nonhuman primates against aerosol exposure (Pratt et al., 1998) .
T11 101117-101363 Sentence denotes A more stably attenuated VEEV vaccine candidate called V3526 has been produced, where preclinical testing has demonstrated it to be safe and immunogenic and possibly superior to TC-83 (Pratt et al., 2003; Hart et al., 2000; Ludwig et al., 2001) .
T12 101364-101554 Sentence denotes Adaptive immune PBMC-derived biomarker signatures have been identified and able to efficiently stratify TC-83 vaccinated from naïve or nonresponding individuals (Erwin- Cohen et al., 2012) .
T13 101555-101637 Sentence denotes RABV is the type species of the genus Lyssavirus, within the Rhabdoviridae family.
T14 101638-101745 Sentence denotes Rhabdoviruses are negative-sense, single-stranded RNA viruses having a distinctive bullet-shaped structure.
T15 101746-101824 Sentence denotes Up to 10 viruses of Lyssaviruses have the potential to cause rabies in humans.
T16 101825-102017 Sentence denotes These have a 12,000 nucleotide genome encoding five proteins: nucleoprotein (N), phosphoprotein (P), matrix (M), glycoprotein (G), and RNA-dependent-RNA polymerase (L) (Marston et al., 2007) .
T17 102018-102099 Sentence denotes RABV causes acute encephalitis in mammals, causing fatality rates of almost 100%.
T18 102100-102215 Sentence denotes RABV commonly infects many animals, including bats, skunks, foxes, and dogs and can also infect insects and plants.
T19 102216-102283 Sentence denotes RABV in animal saliva spreads between hosts via bites or scratches.
T20 102284-102489 Sentence denotes Infected animals can survive for years, secreting infectious particles in their saliva, but untreated infection in humans generally results in rapidly fatal acute myeloencephalitis (Koyuncu et al., 2013) .
T21 102490-102607 Sentence denotes Rabid dogs are the most important reservoirs for RABV, where dog bites account for more than 99% of human infections.
T22 102608-102731 Sentence denotes RABV, like all members of Lyssaviruses, is neurotropic and infects peripheral nerves close to the primary site of the bite.
T23 102732-102846 Sentence denotes RABV then rapidly moves by retrograde axonal transport to the dorsal root ganglia where virus replication begins .
T24 102847-103023 Sentence denotes RABV particles enter axons of motor neurons at the NMJ via their binding to nicotinic acetylcholine receptors (e.g., nAchR) and neural cell adhesion molecules (Ugolini, 2011) .
T25 103024-103159 Sentence denotes Transneuronal RABV spread occurs between synaptically connected neurons, whereby viruses move from postsynaptic to presynaptic neurons.
T26 103160-103347 Sentence denotes In humans, a relatively long asymptomatic incubation period after initial RABV infection can occur, sometimes lasting up to 1 year, and providing some time for CNS infection intervention.
T27 103348-103495 Sentence denotes However, death almost always ensues after RABV infection reaches the CNS, with marked behavioral and neurological symptoms (Koyuncu et al., 2013) .
T28 103496-103623 Sentence denotes Once RABV has entered the CNS, it rapidly moves to the brain and is associated with an explosive increase in virus replication.
T29 103624-103772 Sentence denotes Initial symptoms include pain or paraesthesia close to the bite site and are often associated with fever, fatigue, and weakness in associated limbs.
T30 103773-103906 Sentence denotes Nonspecific neurological symptoms including headache and anxiety occur days prior to acute encephalitis (Morrison and Wenzel, 1985) .
T31 103907-104132 Sentence denotes Currently, there are no available therapies against disease symptoms once they develop, and death ensues within a number of days following CNS-associated symptoms (Jackson et al., 2003) and reviewed in Johnson et al. (2010) .
T32 104133-104288 Sentence denotes RABV replication begins following CNS penetration, thereby limiting earlier possible detection of low-level primary antigens in the peripheral circulation.
T33 104289-104423 Sentence denotes This delays antigen presentation, where antigens later but rapidly drain from the CNS to local lymphoid tissues (Knopf et al., 1998) .
T34 104424-104801 Sentence denotes Once B cells are stimulated, the next delaying obstacle is re-entry into the CNS, but experimental models have demonstrated T and B cell infiltration of dorsal root ganglia, spinal cord, and brain (Johnson et al., 2008) , with T cells as the major immune subsets, but where most of these CNS-infiltrated T cells have Fas-mediated apoptotic phenotypes (Baloul and Lafon, 2003) .
T35 104802-105008 Sentence denotes Further intrinsic complexities in immune responses are present in the CNS, including tight MHC expression regulation (Irwin et al., 1999) , and the expression of immunosuppressive factors by neuronal cells.
T36 105009-105088 Sentence denotes Additionally, the BBB remains intact during RABV infection (Roy et al., 2007) .
T37 105089-105380 Sentence denotes Numerous studies have suggested that the virus suppresses the adaptive immune response, believed to be in part due to a deficit of adaptive immune effector cell accumulation within the CNS due to a virally induced reduction in BBB permeability (Libbey and Fujinami, 2014; Roy et al., 2007) .
T38 105381-105565 Sentence denotes Two RABV vaccines are licensed for human application, the human diploid cell vaccine manufactured by Aventis Pasteur and the purified chick embryo cell vaccine manufactured by Chiron .
T39 105566-105971 Sentence denotes Pre-exposure vaccination given to healthcare personnel, laboratory workers, and travelers to endemic areas causes detectable IgM and IgG antibodies within a week following exposure, and long-term studies have provided evidence that IgG antibodies provide the most effective protection against RABV due to its ability to penetrate tissues, in contrast to IgM which cannot penetrate tissues (Turner, 1978) .
T40 105972-106243 Sentence denotes A multifaceted approach for human rabies eradication involving government support, disease awareness, and vaccination of at-risk humans and dogs will be required to achieve the goals of the World Health Organization in eradication of rabies by 2030 (Fooks et al., 2017) .
T41 106244-106331 Sentence denotes The CNS is immunologically privileged and protected by a highly complex barrier system.
T42 106332-106498 Sentence denotes Viruses that have evolved to overcome these barriers can cause CNS infections greatly outnumbering those from all bacterial, fungal, and protozoa infections combined.
T43 106499-106721 Sentence denotes Ingested PV multiplies in the oropharyngeal and intestinal mucosa and drains to cervical and mesenteric lymph nodes and then into the blood ahead of penetrating the CNS to cause polio, with 10% of cases resulting in death.
T44 106722-106841 Sentence denotes Both neutralizing antibodies and the adaptive immune system can clear PV infection and may provide lifelong protection.
T45 106842-107034 Sentence denotes Vaccination combinations can induce PV-specific cytolytic CD4 þ and CD8 þ T cells for virus clearance, but their coadministration can pose the risk for reversion to virulence by recombination.
T46 107035-107306 Sentence denotes The JE flavivirus is amplified by waterfowl and transmitted to humans by mosquitoes, and while 99% of its infections are asymptomatic, mortality rates in 30% of infected individuals cause associated disorders that leave its survivors a lifetime of associated morbidities.
T47 107307-107411 Sentence denotes As there is no existing JE treatment, prevention involves either avoidance of mosquitoes or vaccination.
T48 107412-107525 Sentence denotes Flaviviruses evade the immune system to cross the BBB by an inflammatory celle mediated "Trojan horse" mechanism.
T49 107526-107663 Sentence denotes JE dissemination is limited by innate immune responses, neutralizing antibodies produced by humoral immunity, and by virus-specific CTLs.
T50 107664-107841 Sentence denotes JE vaccines are licensed worldwide, and the majority of vaccinated individuals have circulating JE-specific CD4 þ and CD8 þ T cells that can cross-react with other flaviviruses.
T51 107842-108023 Sentence denotes Alphaviruses are transmitted by mosquito bites to infect neurons, causing mild to severe encephalitis resulting in death, with past outbreaks numbering in the hundreds of thousands.
T52 108024-108165 Sentence denotes VEEV infection causes up to 35% mortality in children, 75% of which involve CNS penetration, causing severe long-term neurological disorders.
T53 108166-108381 Sentence denotes VEEV is not only a naturally emerging disease threat but is also a highly developed biological weapon amenable to warfare or terrorism due to its aerosol transmission route and associated lethal meningoencephalitis.
T54 108382-108582 Sentence denotes IFN signaling pathways and ab and gd T cell response from innate and adaptive immunity can control VEEV targeting of CNS, where virus-specific antibody responses are critical in limiting viral spread.
T55 108583-108784 Sentence denotes In the absence of antibodies, VEEV replicon particles can induce T cell responses able to induce recovery from VEEV-induced encephalomyelitis, where cytotoxic CD4 þ T cells control VEEV in CNS lesions.
T56 108785-108872 Sentence denotes VEEV vaccines induce robust neutralizing antibodies for protection against rechallenge.
T57 108873-109008 Sentence denotes TC-83 vaccine responders have circulating PBMC biomarkers, and military programs give boosters of C-84 to those failing to seroconvert.
T58 109009-109295 Sentence denotes In contrast to these other viruses, RABV replication only begins after CNS penetration, as facilitated by depth of bite by its canine vector, thereby limiting possible detection of primary viral antigen in the periphery and resulting in delayed and minimal innate and humoral responses.
T59 109296-109504 Sentence denotes Once RABV-related acute encephalitis symptoms begin, fatality is sure to follow due to absence of CNS infiltration by adaptive immune effector cells as a result of virus-induced decreases in BBB permeability.
T60 109505-109634 Sentence denotes Other countermeasures against protection are tight MHC expression regulation and apoptotic phenotypes of BBB-infiltrated T cells.
T61 109635-109748 Sentence denotes RABV vaccines cause increases in Ig, but little is known concerning vaccine-associated adaptive immune responses.
T62 109749-109920 Sentence denotes Viral hemorrhagic fever (VHF) classification originates from the study of hantaviral hemorrhagic fever (HF) and was later extended to include CrimeaneCongo HF and Omsk HF.
T63 109921-109999 Sentence denotes VHF can results from infection by 23 enveloped RNA viruses from four families:
T64 110000-110058 Sentence denotes Flaviviridae, Filoviridae, Arenaviridae, and Bunyaviridae.
T65 110059-110191 Sentence denotes VHF designation is given to severe febrile illnesses with abnormal vascular regulation and vascular damage (Peters and Zaki, 2002) .
T66 110192-110471 Sentence denotes Vascular dysregulation occurs early in the course of disease, visible as skin flushing, hypotension, and conjunctival vasodilation, whereby vascular damage with capillary leakage occurs as disease progresses, causing edema and serous effusions of pleural and peritoneal cavities.
T67 110472-110655 Sentence denotes The terminal phase of VHF, or shock, arises from increased disease severity from combinations of vascular dysregulation and damage from capillary leakage (Paessler and Walker, 2013) .
T68 110656-111016 Sentence denotes Detailed mechanisms of hemorrhage and plasma leakage during VHF include endothelial injury, activation of the mononuclear phagocytic system, cytokine storm, platelet aggregation and consumption, activation of the coagulation cascade, and insufficiency of coagulation factors from severe hepatic damage (Schnittler and Feldmann, 2003; Chen and Cosgriff, 2000) .
T69 111017-111148 Sentence denotes These mechanisms vary among diseases, cell and organ tropism of causative viruses, and host responses (Paessler and Walker, 2013) .
T70 111149-111244 Sentence denotes Flaviviruses, filoviruses, arenaviruses, and bunyaviruses are the main causes of HF (Table 1) .
T71 111245-111372 Sentence denotes These viruses continue to propagate as part of the life cycles of primates, bats, rodents, farm animals, mosquitoes, and ticks.
T72 111373-111514 Sentence denotes Infection by these viruses can cause mild vascular instability to fatal shock, with hemorrhage ranging from unnoticeable to life-threatening.
T73 111515-111699 Sentence denotes Pathogenic mechanisms of HFV are diverse and include hepatic necrosis leading to deregulation of coagulation factors, cytokine storm, increased permeability, and complement activation.
T74 111700-111866 Sentence denotes Overall disease severity by these viruses is varied, whereby ebola and Marburg HF can cause high fatality rates, whereas YF and dengue infections can be asymptomatic.
T75 111867-112042 Sentence denotes Severe VHF is commonly correlated with ineffective immunity and high viral loads, and severe plasma leakage can occur from viral clearance and fever breaks in dengue HF (DHF).
T76 112043-112353 Sentence denotes Approximately 73 viruses are included in the Flavivirus genus of the Flaviviridae family of viruses, with 40 of these species associated with dengue, YF, JE, tick-borne encephalitis, and West Nile encephalitis as the most important arboviruses causing extensive global morbidity and mortality (Diamond, 2003) .
T77 112354-112573 Sentence denotes Flaviviruses are enveloped viruses with single-stranded RNA genomes that are translated in the cytoplasm to generate a single polyprotein that is then cleaved into structural and NS proteins by virus and host proteases.
T78 112574-112769 Sentence denotes The various encoded viral proteins include capsid, envelope for receptor binding, membrane fusion and viral assembly, and transmembrane proteins (prM) that assist in protein folding and function.
T79 112770-113159 Sentence denotes Although the precise mechanism is unclear, flaviviruses are believed to evade the immune system to enter the brain and spinal cord via circulating blood (Johnson and Mims, 1968) , where these may cross the BBB by passive transport across the endothelium, by active replication in endothelial cells, or by a "Trojan horse" mechanism utilizing inflammatory cells (Solomon and Vaughn, 2002) .
T80 113160-113371 Sentence denotes IFN-dependent and complement system innate immune responses and humoral immunity, producing neutralizing antibodies limit dissemination of infection and protect against viral spread, reviewed in Diamond (2003) .
T81 113372-113709 Sentence denotes Cellular immunity is also important toward eradication of infected cells, whereby infection induces the recognition of flavivirusinfected cells by virus-specific CTLs, which then become activated, proliferate, and release inflammatory cytokines (Kesson et al., 1987; Kurane et al., 1989a; Liu et al., 1989; Murali-Krishna et al., 1996) .
T82 113710-113892 Sentence denotes However, there is also evidence that flavivirus replication is enhanced by myeloid cells and has been observed for dengue, YF, West Nile, tick-borne, and JE viruses (Diamond, 2003) .
T83 113893-113953 Sentence denotes YF virus (YFV) is important both historically and currently.
T84 113954-114052 Sentence denotes It was once one of the most globally feared diseases terrorizing Africa, Europe, and the Americas.
T85 114053-114173 Sentence denotes Hundreds of thousands were killed in the Americas over a 250-year spandcrippling economies (Watson and Klimstra, 2017) .
T86 114174-114306 Sentence denotes YFV is a member of the genus Flavivirus of the Flaviviridae family and contains a single-stranded RNA genome of approximately 11 kb.
T87 114307-114469 Sentence denotes YFV virions are icosahedral and are composed of nucleocapsid, composed of capsid (C) protein subunits and a surrounding lipid bilayer derived from host membranes.
T88 114470-114599 Sentence denotes The viral envelope is studded with dimers of envelope (E) and membrane (M) proteins, for a total diameter of approximately 45 nm.
T89 114600-114754 Sentence denotes As the major component of the virion surface, the E protein is responsible for cell-surface receptor binding, virion assembly, fusion, and immunogenicity.
T90 114755-115013 Sentence denotes Viral proteins are encoded in a single open reading frame and produced as a polyprotein later processed by proteolytic cleavage into structural (C, M, and E) and NS proteins (NS1, NS2a, Ns2b, Ns3, NS4a, Ns4B, and NS5) , reviewed in Gardner and Ryman (2010) .
T91 115014-115138 Sentence denotes During most YFV infections, the virus is transmitted by the bite of an infected Aedes aegypti mosquito found in urban areas.
T92 115139-115415 Sentence denotes Infected patients often develop severe acute illness hemorrhagic YF disease, with associated symptoms of fever, nausea, vomiting, epigastric pain, hepatitis, jaundice, renal failure, hemorrhage, and shock, with 20%e60% of cases resulting in death (Watson and Klimstra, 2017) .
T93 115416-115677 Sentence denotes YF is the prototypical VHF, sharing many pathophysiological features with other viral disorders only associated via similarities in syndromes, but with the exception that YF causes the most severe symptoms of hepatic dysfunction (Monath and Vasconcelos, 2015) .
T94 115678-115888 Sentence denotes YFV remains endemic in South American and African countries, with monkeys as its reservoir, causing regular outbreaks of jungle YF, and resulting in as many as 200,000 infections per year causing 30,000 deaths.
T95 115889-115971 Sentence denotes Millions are at risk for infection in Africa, where vaccination prevalence is low.
T96 115972-116272 Sentence denotes The 2016 outbreak in Angola serves as an example of YFV traveler-associated spreading to neighboring countries, where it reached as far as China, then naïve for virus (Watson and Klimstra, 2017) , and representing a prime population for a major outbreak of epic proportions (Wasserman et al., 2016) .
T97 116273-116444 Sentence denotes Geographical shifting of mosquito populations to North America is also creating new risk for YFV, dengue, and Zika infection of naïve populations (Monaghan et al., 2016) .
T98 116445-116659 Sentence denotes Despite the availability of vaccination against YFV since the 1940s, large epidemics have still arisen, with dramatic surges of YFV in Africa in the 1960s and the late 1980s, with each reporting over 100,000 cases.
T99 116660-116759 Sentence denotes Recent outbreaks have also affected Brazil, Paraguay and Argentina, Uganda, and Sudan and Ethiopia.
T100 116760-117083 Sentence denotes Immunity is the critical for reducing and eliminating viral infections, but other contributing factors to virus amplification are multifactorial and elusive, including the emergence of new viral strains and prolonged periods of hot and humid weather promoting insect propagation, reviewed in Monath and Vasconcelos (2015) .
T101 117084-117174 Sentence denotes Fifty-seven million people were vaccinated against YF across Africa between 2007 and 2010.
T102 117175-117372 Sentence denotes Five hundred million doses of the live-attenuated YF 17D vaccine, representing the most effective vaccine ever created, have been distributed over the last 50 years (Monath and Vasconcelos, 2015) .
T103 117373-117635 Sentence denotes Both humoral and cellular immunity elicited by 17D are observed and well characterized, where neutralizing antibodies provide protection, but 17D also provides a robust, long-lived, and polyfunctional adaptive T cell immune response (Watson and Klimstra, 2017) .
T104 117636-117825 Sentence denotes Neutralizing antibodies remain the accepted correlate of protection against YFV, with 90% or greater of 17D immunized individuals developing neutralizing antibodies (Gotuzzo et al., 2013) .
T105 117826-117975 Sentence denotes 17D also elicits a complex modulation of innate immune cytokines, with elevated levels of plasma IFN-g 15 days postvaccination (Neves et al., 2009) .
T106 117976-118284 Sentence denotes Restimulation of innate immune cell cultures of NK cells, neutrophils, and monocytes from 17D vaccinated humans with YF antigen results in the increased production of IFN-g, IL-1beta, IL-10, IL-12, TNF-a, and IL-10 (Neves et al., 2009; Gardner and Ryman, 2010; Luiza-Silva et al., 2011; Silva et al., 2011) .
T107 118285-118430 Sentence denotes Since its development, humoral immunity, as a gold standard of general vaccine development, was the most studied aspect of human immunity to 17D.
T108 118431-118731 Sentence denotes However, recent studies of adaptive T cellemediated immunity to 17D have demonstrated that both CD4 þ and CD8 þ T cells strongly respond to 17D, with activated CD8 þ T cells detected as 3 days after vaccination , and CD4 þ T cells detected several days later Kohler et al., 2012; Blom et al., 2013) .
T109 118732-118871 Sentence denotes Increased CD8 þ T cell proliferation correlates directly with the levels of virus genomes in plasma, which peaks once virus is eliminated .
T110 118872-119080 Sentence denotes CD8 þ T cell clones responding to 17D differentiate into central memory and effector memory subpopulations (Dewitt et al., 2015) and are still detectable 25 years following vaccination (Wieten et al., 2016) .
T111 119081-119580 Sentence denotes 17D-specific CD8 þ T cells respond to epitopes contained from every protein product generated by the 17D polyprotein, and upon peptide restimulation, these 17D-specific CD8 þ T cells have activated cytotoxic profiles including increased expression of IFN-g, TNF-a, and MIP1-b and IL-2 granzyme B and CD107a (Blom et al., 2013; Akondy et al., 2009) but are not exhausted and retain long-lived memory and polyfunctional phenotypes for at least 2 years following 17D rechallenge (Akondy et al., 2009) .
T112 119581-119827 Sentence denotes Dengue virus (DENV), also a member of the single-stranded positivesense RNA viruses from the Flaviviridae family, causes visceral and CNS disease in humans and is closely related to YFV, where DENV fever has often been mistaken for YFV infection.
T113 119828-120000 Sentence denotes Far more serious is DHF, where additional symptoms develop, including hemorrhage and shock, and have mortality rates exceeding 30% if left untreated (Rogers et al., 2006) .
T114 120001-120144 Sentence denotes DENV is a spherical, 50-nm virion, comprising of three structural proteins: capsid (C), premembrane and membrane (prM and M), and envelope (E).
T115 120145-120324 Sentence denotes The E protein directs several critical steps of the viral replication cycle, including engagement with cellular attachment and entry factors, membrane fusion, and virion assembly.
T116 120325-120518 Sentence denotes DENV binds to target cells via glycosaminoglycans, C-type lectins such as DC-SIGN, the mannose receptor CD206, and immunomodulatory proteins (TIM and TAM receptors; Diamond and Pierson, 2015) .
T117 120519-120647 Sentence denotes Thus targets for DENV infection include monocytes, macrophages, DCs, mast cells, and possibly hepatocytes and endothelial cells.
T118 120648-120908 Sentence denotes Following its entry into the cellular cytoplasm, the viral genomic 10.7 kb RNA is translated into a single polyprotein, later cleaved into three structural and seven NS proteins (NS1, NS2a, Ns2b, Ns3, NS4a, Ns4B, and NS5 ) by viral NS3 and host cell proteases.
T119 120909-121090 Sentence denotes Twenty-five percent of DENV infections cause both mild symptoms including dengue fever (DF) to more severe and lethal DHF, causing shock via hemorrhagic and capillary leak syndrome.
T120 121091-121346 Sentence denotes DF can be characterized by abrupt onset febrile illness causing headache, severe muscle and joint pain, and rash, whereas DHF is characterized by rapid onset capillary leakage accompanied by significant thrombocytopenia and liver injury (Halstead, 2007) .
T121 121347-121538 Sentence denotes As with YF, DENV origins are believed to be that of a sylvatic virus, with a natural life cycle involving multiple mosquito and vertebrate species from Asia and Africa (Diallo et al., 2003) .
T122 121539-121667 Sentence denotes DENV adaptation to human demography is via mosquito vector Aedes aegypti, breeding in urban areas (Trpis and Hausermann, 1986) .
T123 121668-121821 Sentence denotes Cases of DENV infection have increased since the 1960s, with an estimated 50 million cases of DF, and 500,000 cases of DHF occurring globally every year.
T124 121822-122046 Sentence denotes There are no cures for DENVassociated disorders, and vaccine development has been complicated by antibody-dependent enhancement of future heterotypic infection induced by vaccination (Vaughn, 2000; Halstead and Deen, 2002) .
T125 122047-122163 Sentence denotes Thus avoidance and control of Aedes aegypti is the best approach for limiting DENV infection (Rogers et al., 2006) .
T126 122164-122471 Sentence denotes Adaptive immune CD8 þ T cells vigorously and frequently recognize DENV NS3, NS4B, and NS5 proteins, whereas the capsid, envelope, and NS3 proteins are the dominant targets for CD4 þ T cells (Simmons et al., 2005; Duangchinda et al., 2010; Weiskopf et al., 2011 Weiskopf et al., , 2013 Rivino et al., 2013) .
T127 122472-122769 Sentence denotes Both CD4 þ and CD8 þ T cells are believed to contribute to protection against DENV, as DENV-specific CD4 þ T and CD8 þ T cells proliferate, produce IFN-g, and lyse target cells, from primary DENV infection (Kurane et al., 1989b; Mathew et al., 1996; Gagnon et al., 1999; Livingston et al., 1995) .
T128 122770-122908 Sentence denotes Higher frequencies of DENV-specific IFN-gproducing T cells are present in children with asymptomatic DENV infection (Hatch et al., 2011) .
T129 122909-123306 Sentence denotes Both CD4 þ and CD8 þ T cells contribute to protection against DENV challenge (Yauch et al., 2009 (Yauch et al., , 2010 Zompi et al., 2012; Zellweger et al., 2013) , and HLA alleles associated with increased risk of DENV severity correlated with weak CD8 þ T cell responses and vice versa, implying a protective role for CD8 þ T cells against severe DENV disease in humans (Weiskopf et al., 2013) .
T130 123307-123682 Sentence denotes In 2015, the first dengue vaccine (Dengvaxia) was licensed in Asian and South American countries for protection against all four DENV serotypes, and while it demonstrated an good safety and efficacy in clinical trials, it has recently been withdrawn in the Philippines due to its causing elevated disease severity if administered following infection (Wichmann et al., 2017) .
T131 123683-124216 Sentence denotes It has been suggested that failure of this and other live-attenuated tetravalent dengueeYF chimeric virus vaccines (Guy et al., 2011) is the result of their lacking the NS proteins NS3, NS4B, and NS5, otherwise dominantly targeted by CD8 þ T cells (Simmons et al., 2005; Duangchinda et al., 2010; Weiskopf et al., 2011 Weiskopf et al., , 2013 Rivino et al., 2013) , making it critical to accurately assess not only antibody responses but rather T cell responses in the context of DENV vaccine development (Weiskopf and Sette, 2014) .
T132 124217-124355 Sentence denotes Lassa virus (LASV), causing Lassa fever (LF), is an enveloped virus with two single-stranded RNA segments and is another virus causing HF.
T133 124356-124421 Sentence denotes LASV is an Old World member of the Arenavirida family of viruses.
T134 124422-124550 Sentence denotes The single-stranded arenavirus genome consists of a small (S) and a large (L) RNA segment, measuring 3.4 and 7 kb, respectively.
T135 124551-124707 Sentence denotes The large segment encodes a small zinc-binding (Z) protein which regulates transcription, replication, and viral budding, along with the RNA polymerase (L).
T136 124708-124853 Sentence denotes The small segment encodes the NP and the two envelope glycoproteins (GP1 and GP2) responsible for cell entry, reviewed in Russier et al. (2012) .
T137 124854-125127 Sentence denotes LASV disorder is endemic in Africa and its neighboring countries (Safronetz et al., 2010; Gunther et al., 2000) , and though infection rates are difficult to quantify due to limited survey infrastructure, classification of its clinical symptoms is common to other diseases.
T138 125128-125288 Sentence denotes LASV is predicted to be responsible for approximately 300,000 infections and up to 6000 resultant deaths each year (Ogbu et al., 2007; Mccormick et al., 1987) .
T139 125289-125381 Sentence denotes Transmission to humans is via the rodent host Mastomys natalensis (Mccormick et al., 1987) .
T140 125382-125667 Sentence denotes APCs, DCs, and macrophages are believed to be the first cells targeted by LASV infection (Baize et al., 2004; Mahanty et al., 2003) , which can rapidly speed up dissemination of LASV to multisystem organs due to their widespread physiological distributions in mucosal tissues and skin.
T141 125668-125861 Sentence denotes Due to their ease in motility across various organs and tissues, APCs are believed to the responsible for the spread of LASV for the establishment of systemic infection (Hensley et al., 2011) .
T142 125862-126037 Sentence denotes APC infection results in substantial virus release in the secondary lymphoid organs, the liver, hepatocytes, fibroblasts, and endothelial cells that are subsequently infected.
T143 126038-126175 Sentence denotes Lymphopenia of CD4 þ and CD8 þ T cells, NK cells, and B cells is observed early during disease onset, reviewed in Russier et al. (2012) .
T144 126176-126453 Sentence denotes LASV infection severities range from asymptomatic infection to fatal HF (Fisher-Hoch et al., 1995) and commonly resulting from other viral infections, nonspecific symptoms beginning several days after infection include fever, headache, arthralgia, myalgia, and severe asthenia.
T145 126454-126600 Sentence denotes These early symptoms are typically followed by more severe symptoms of pharyngitis, conjunctivitis, cough, abdominal pain, diarrhea, and vomiting.
T146 126601-126785 Sentence denotes In severely affected patients, cervical and facial edema, hemorrhages, renal and liver failures, and encephalopathy occur, and death follows systemic shock (Edington and White, 1972) .
T147 126786-126927 Sentence denotes Survivors of LASV-related disorders have persisting lifelong morbidities and disabling conditions including deafness (Cummins et al., 1990) .
T148 126928-127187 Sentence denotes No vaccine has been licensed against LASV, and ribavirin is the only existing treatment, but is only effective if administered very early after infection and is not available for broad distribution in countries where LASV is endemic (Mccormick et al., 1986) .
T149 127188-127421 Sentence denotes T cells play a crucial role in the outcome of severe LASV infection, which has been associated with defective T cell responses since the very cells responsible for stimulating T cell antigen responses are those infected by the virus.
T150 127422-127703 Sentence denotes However, T cell responses have been demonstrated to play critical roles in the control of LASV, where strong memory CD4 þ T cell responses directed against LASV NP and GP proteins are observed in LASVseropositive healthy individuals from endemic regions (Ter Meulen et al., 2004) .
T151 127704-127944 Sentence denotes High serum concentrations of IL-8 and CXCL10 chemokines that attract and activate T cells are associated with nonfatal LASV infections (Christensen et al., 2006; Dufour et al., 2002) and vice versa in fatality cases (Mahanty et al., 2001) .
T152 127945-128116 Sentence denotes The control of acute LF has been correlated with increases in circulating activated CD4 þ and CD8 þ T cells in response to LASV infection or antigen (Baize et al., 2009) .
T153 128117-128285 Sentence denotes In vaccine studies, protection against a lethal LASV rechallenge is associated with the induction of T cell immunity (Fisher-Hoch et al., 2000; Geisbert et al., 2005) .
T154 128286-128417 Sentence denotes However, in comparison to other viruses, LASV-infected DCs are unable to mount effector T cell responses (Pannetier et al., 2011) .
T155 128418-128822 Sentence denotes Human and nonhuman primate studies have demonstrated that LASV NP and GP proteins are the main viral antigens recognized by activated T cells (Meulen et al., 2004; Ter Meulen et al., 2000; Fisher-Hoch et al., 2000; Fisher-Hoch and Mccormick, 2001, 2004; Geisbert et al., 2005) , suggesting that vaccines using these proteins to induce long-term memory T cell expansion will best control the spread of LF.
T156 128823-128960 Sentence denotes Ebola virus (EBOV) causes a rapidly fatal HF for which there is currently no treatment (Muyembe-Tamfum et al., 2012; Team et al., 2014) .
T157 128961-129090 Sentence denotes EBOV is a member of the Filoviridae family, which are filamentous, negative-stranded RNA viruses that cause severe human disease.
T158 129091-129306 Sentence denotes Filoviruses viruses are variable, with long filaments measuring 80 nm in diameter and which can reach lengths of up to 1000 nm, with many turns and branches and which have tendency to curve to resemble the number 6.
T159 129307-129590 Sentence denotes Viruses are composed of nucleocapsid, matrix, and envelope proteins, whereby seven genes encode NP, the viral proteins VP24-VP30-VP35-VP40, L (polymerase), and the GP (Hoenen et al., 2006) , expressed as GP1 and GP2, and regulating virus production and release (Mohan et al., 2015) .
T160 129591-129660 Sentence denotes NPs embed the genome in complex with VP30 and VP35 for RNA synthesis.
T161 129661-129766 Sentence denotes VP40 and VP24 proteins are localized in virus matrix space (Watanabe et al., 2007; Hoenen et al., 2010) .
T162 129767-130041 Sentence denotes EBOV is transmitted to humans via mucosal surfaces, skin injury, and vertical transmission (Feldmann and Geisbert, 2011) , and with the exception of T cells, can infect almost all human cells using various different attachment mechanisms, reviewed in Falasca et al. (2015) .
T163 130042-130383 Sentence denotes Both innate and adaptive immune responses are involved in EBOV pathogenesis, where innate immune deregulation involves inhibition of type-I IFN response and perturbation of cytokine signaling, along with impairment of DC and NK cells, and adaptive immune deregulation involves both humoral and cell-mediated immunity (Falasca et al., 2015) .
T164 130384-130814 Sentence denotes Because high levels of EBOV replication are associated to multiple cell types, its associated systemic dissemination results in a highly complex pathogenesis model, including detrimental immune suppression and hyperactivation, and leading to disordered coagulation and tissue damage, that, in the absence of treatment, results in rapid multiple organ failure and death within days of symptomatic infection (Baseler et al., 2017) .
T165 130815-130935 Sentence denotes For 50 years, EBOV and related filoviruses have been repeatedly re-emerging to cause large epidemics of highly fatal HF.
T166 130936-131121 Sentence denotes Ongoing EBOV outbreaks in Africa has brought this virus to the forefront of research, with over 20,000 reported cases of infection and an associated 8000 deaths (Mcelroy et al., 2015) .
T167 131122-131307 Sentence denotes Natural serologic response to EBOV infection involves virus-specific IgM and IgG antibody responses sometimes detected early, but usually later, once symptoms begin Rowe et al., 1999) .
T168 131308-131489 Sentence denotes EBOVinfected DCs are impaired in cytokine production required for T cell activation (Mahanty et al., 2003) , whereas infected macrophages are unable to mature (Bosio et al., 2003) .
T169 131490-131726 Sentence denotes EBOV is classified as an immunosuppressive virus since numerous of its proteins interfere with immune responses by inducing T cell apoptosis, lymphopenia, and absence of antibody responses in fatal cases (Basler and Amarasinghe, 2009 ).
T170 131727-131908 Sentence denotes Classification of EBOV-targeting mechanisms has been compromised by lack of infrastructure for adequate biosafety containment level facilities required to analyze this deadly virus.
T171 131909-132354 Sentence denotes However, observations of the adaptive T cell immune response have shown that EBOV correlates with fatal outcomes by causing aberrant cytokine responses (Baize et al., 1999 (Baize et al., , 2002 Wauquier et al., 2010; Villinger et al., 1999; Ansari, 2014) , decreased CD4 þ and CD8 þ T cells, and increased apoptotic T cell phenotypes (Baize et al., 1999; Wauquier et al., 2010; Geisbert et al., 2000; Bradfute et al., 2010; Gupta et al., 2007) .
T172 132355-132744 Sentence denotes In recent work, EBOV induced increased CD4 þ and CD8 þ T cell activation against the viral NP, with CD8 þ T cells demonstrating the largest increases in expression of activation and proliferation biomarkers, with sustained activation following EBOV clearance and following patient discharge, suggesting continued antigen stimulation after resolution of the disease (Mcelroy et al., 2015) .
T173 132745-133061 Sentence denotes Recently, an rVSV-ZEBOV recombinant, replicationecompetent vesicular stomatitis virusebased vaccine expressing a surface GP of Zaire ebolavirus, demonstrate a 100% efficacy in preventing EBOV disease in contacts and contacts of contacts of recently confirmed cases in Guinea, West Africa (Henao-Restrepo, 2017 #550).
T174 133062-133322 Sentence denotes This vaccine produced rapid innate immune responses after a single dose, suggested to lead to longerterm full protection by providing an essential period of restricted virus replication during the development of specific adaptive responses (Marzi, 2015 #551) .
T175 133323-133432 Sentence denotes Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne virus causing HF resulting in human fatalities.
T176 133433-133565 Sentence denotes CCHFV is a member of the Nairoviridae family of viruses from the genus of Orthonairovirus and the order of the Bunyaviridae viruses.
T177 133566-133731 Sentence denotes It has a single-stranded, negative-sense RNA genome possessing three segments: the large (L), medium (M), and small (S) segments (Casals, 1969; Clerx et al., 1981) .
T178 133732-133866 Sentence denotes The L segment encodes the viral RNA-dependent RNA polymerase responsible for mRNA synthesis and RNA replication (Honig et al., 2004) .
T179 133867-134024 Sentence denotes The M-segment encodes numerous NS and two structural GPs (GN and GC) responsible for cell tropism and attachment and are targets for neutralizing antibodies.
T180 134025-134180 Sentence denotes The S-segment encodes the viral NP binding the RNA segments toward formation of ribonucleoprotein complexes (Altamura et al., 2007; Sanchez et al., 2006) .
T181 134181-134383 Sentence denotes Though HF by CCHFV infection in humans is not among the most common viral disorders reported, it remains important because it is fatal in up to 30% of cases (Bente et al., 2013; Goedhals et al., 2017) .
T182 134384-134619 Sentence denotes Transmission of CCHFV to humans occurs through contact with infected animal blood, or ticks, belonging to the genus Hyalomma, as its primary vectors and providing transit from one infected human to another (Mousavi-Jazi et al., 2012) .
T183 134620-134945 Sentence denotes CCHFV human infection involves sudden onset of acute symptoms, including high fever, headache, myalgia, and petechial rash, followed by hemorrhage progressing to multiorgan failure, with leukopenia, thrombocytopenia, and elevated liver enzymes as hallmarks of the overall disorder (Begum et al., 1970; Sanchez et al., 2006) .
T184 134946-135039 Sentence denotes Outbreak-associated fatality rates are varied but can reach 70% (Mousavi-Jazi et al., 2012) .
T185 135040-135204 Sentence denotes There is currently no licensed vaccine, and use of Ribavirin as treatment has been investigated but remains controversial (Begum et al., 1970; Bente et al., 2010) .
T186 135205-135353 Sentence denotes Distribution of CCHFV infection and associated disease follows geographical spread of the principal vectors (Bente et al., 2013; Whitehouse, 2004) .
T187 135354-135677 Sentence denotes Clinical CCHFV disorders are described in Africa, Asia, the Middle and East Eastern Europe, and have recently emerged in other countries including Turkey, India, Spain, and Greece, and with almost 10,000 cases reported in Turkey between 2002 and 2015 (Maltezou et al., 2010; Papa et al., 2008; Leblebicioglu et al., 2016) .
T188 135678-135931 Sentence denotes Typically, transient IgM and IgG antibody responses develop within days following primary CCHFV infection and can persist long-term (Shepherd et al., 1989; Burt et al., 2013) , but where lack thereof usually results in fatality (Shepherd et al., 1989) .
T189 135932-136127 Sentence denotes IgM and IgG antibodies have however not been correlated with clearance, viral load, or outcomes (Duh et al., 2007) , implying that innate and T cell immunity must be critical for viral clearance.
T190 136128-136308 Sentence denotes Neutralizing antibodies also do not cause protection, and nonneutralizing antibodies may assist in antibody-dependent cell-mediated cytotoxicity (Bertolotti-Ciarlet et al., 2005) .
T191 136309-136443 Sentence denotes Thus, as immune correlates of protection for CCHFV are not well documented, vaccine design has aimed at targeting the CCHFV NP or GPs.
T192 136444-136739 Sentence denotes Only an inactivated vaccine is available, and even though the attaining of immunogenicity has required its administration in multiple doses, it was demonstrated to reduce infections and induce both neutralizing antibody responses and T cell responses to NP peptides (Mousavi-Jazi et al., 2012) .
T193 136740-137012 Sentence denotes Another promising approach is the use of modified VACV Ankara recombinant vaccine expressing the viral GPs, which induce cellular and humoral responses and which are observed to provide protection from lethal disease in mice (Buttigieg et al., 2014; Dowall et al., 2016) .
T194 137013-137502 Sentence denotes Although T cell responses are known to play a role in protection from and clearance of viral infections, it was only recently that specific CD8 þ T cell epitopes against GN and GC were shown to stimulate IFN-g production, whereby responses were detectable several years after the acute CCHFV infection, even in the absence of continued antigenic stimulation, and where IFN-g-producing CD8 þ T cells were confirmed as responsible for providing long-term protection (Goedhals et al., 2017) .
T195 137503-137610 Sentence denotes VHFs causes high fatality rates and are commonly correlated with ineffective immunity and high viral loads.
T196 137611-137668 Sentence denotes YFV is important for both historical and current reasons.
T197 137669-137766 Sentence denotes Historically, it crippled economies and families by killing hundreds of thousands over 250 years.
T198 137767-137880 Sentence denotes YFV is transmitted by mosquitos in urban areas, causing as many as 200,000 infections and 30,000 deaths annually.
T199 137881-138061 Sentence denotes Like other mosquito vector viruses, YFV is an existing and re-emerging threat due to increased geological spread by both world travelers and shifting mosquito breeding geographies.
T200 138062-138194 Sentence denotes Flaviviruses evade immunity to enter the brain and spinal cord via circulating blood, crossing the BBB via "Trojan horse" mechanism.
T201 138195-138355 Sentence denotes Dissemination of infection and protection against YFV is elicited by IFN-signaling, complement system, and other innate, humoral, and adaptive immune responses.
T202 138356-138660 Sentence denotes Neutralizing antibodies are still the gold standard correlates of protection, but evidence that a robust, long-lived, and polyfunctional adaptive CD4 þ and CD8 þ T cell immune response is what is provided, early after vaccination by the 500 million doses of effective YF 17D vaccine distributed globally.
T203 138661-138821 Sentence denotes Importantly, these are nonexhausted, polyfunctional central memory and effector memory T cell subsets that are detected for over 25 years following vaccination.
T204 138822-138962 Sentence denotes Far more serious is DHF by infection by DENV, contributing to either mild or severe HF, with mortality rates exceeding 30% in the untreated.
T205 138963-139036 Sentence denotes As with YFV, DENV uses mosquitos adapted to urban areas as their vectors.
T206 139037-139300 Sentence denotes Fifty million cases of DF and 500,000 cases of DHF occur globally each year, with no available cures for its associated disorders and where vaccine development has been complicated by antibody-dependent vaccineinduced enhancement of future heterotypic infections.
T207 139301-139463 Sentence denotes Cytotoxic CD8 þ and CD4 þ T cells, however, vigorously and frequently recognize DENV proteins and are believed to contribute protection against primary infection.
T208 139464-139734 Sentence denotes The DENV vaccine Dengvaxia has been recently withdrawn, with its failure posited to result from its lack of DENV proteins specifically targeted by CD8 þ T cells, and demonstrates that is essential to accurately assess T cell responses in the context of DENV development.
T209 139735-139837 Sentence denotes LASV also causes mild and severe VHF and may cause 300,000 infections and up to 6000 deaths each year.
T210 139838-140046 Sentence denotes LASV is transmitted to humans by a rodent vector and first targets Apc, Dc, and macrophages, contributing to rapid multisystem and organ LASV dissemination due to their widespread physiological distributions.
T211 140047-140216 Sentence denotes LASV also causes lymphopenia of CD4 þ and CD8 þ T cells, NK cells, and B cells, and survivors of LASV-related disorders can be expected to maintain lifelong morbidities.
T212 140217-140391 Sentence denotes There is no licensed LASV vaccine as of yet, complicated by the fact that the very cells responsible for stimulating T cell antigen responses are those infected by the virus.
T213 140392-140562 Sentence denotes However, control of acute LF is correlated with increased circulating strong memory CD4 þ and CD8 þ T cells in response to LASV infection or rechallenge and LASV antigen.
T214 140563-140588 Sentence denotes EBOV also causes mass HF.
T215 140589-140754 Sentence denotes It can infect almost all human cells with exception of lymphocytes and has no known treatment despite documented involvement of innate and adaptive immune responses.
T216 140755-140893 Sentence denotes Classification of EBOV targeting mechanisms are compromised by lack of infrastructure for adequate biosafety containment level facilities.
T217 140894-141155 Sentence denotes EBOV causes DCs to be impaired in cytokine production for T cells activation and inhibits macrophages maturation, thus classifying it as an immunosuppressive virus, with fatalities correlating with its induction of lymphopenia the absence of antibody responses.
T218 141156-141289 Sentence denotes EBOV, however, causes increased CD4 þ and CD8 þ T cell activation, with recorded persistence of activated CD8 þ T cells in survivors.
T219 141290-141428 Sentence denotes The knowledge that CD4 þ and CD8 þ T cell responses are against the EBOV NP will be useful for the design of efficient targeting vaccines.
T220 141429-141492 Sentence denotes CCHFV also causes HF yielding fatalities in up to 30% of cases.
T221 141493-141640 Sentence denotes There is no current vaccine, and CCHFV has recently reemerged in naïve countries in response to geographical relocation of its primary tick vector.
T222 141641-141802 Sentence denotes Infection by CCHFV causes transient Ig antibody responses, inversely correlating with sure fatality, but not correlating with clearance, viral load, or outcomes.
T223 141803-141945 Sentence denotes No protection is granted by neutralizing antibodies either, implying that innate and T cell arms of immunity are critical for viral clearance.
T224 141946-142201 Sentence denotes With little to no immune correlates of protection for CCHFV, vaccine design has aimed at targeting the CCHFV NP or GPs, where immunogenicity requires the administration of multiple doses to induce both neutralizing antibody responses and T cell responses.
T225 142202-142368 Sentence denotes Only recently, specific CD8 þ T cell epitopes against these CCHFV proteins have been confirmed to stimulate cytotoxic CD8 þ T cells providing protection in survivors.
T226 142369-142874 Sentence denotes Despite many documented instances of virus eradication from populations by earlier vaccination strategies, there is a continuous imminent risk of outbreaks of pandemic proportions by existing and emerging viruses, as a result of anti-vaccination campaigns, unforeseen viral strain recombination, exposure of naïve populations to viruses by infected world travellers, a rapidly growing and aging and immunocompromised world population, acts of bioterrorism, and use of viruses as biological weapons in war.
T227 142875-143182 Sentence denotes Past strategies in the development of certain vaccines have often been lucky in their efficacies due to their eliciting both humoral and long-lasting adaptive T cell immunity, whereas others have failed and have only induced shorter lived humoral responses that do not always confer long-lasting protection.
T228 143183-143377 Sentence denotes The precise and likely overlapping mechanisms dictating lifelong immunity conferred by successful vaccines against smallpox, measles, mumps, rubella, polio, and YF are not completely understood.
T229 143378-143501 Sentence denotes What has become clear however is that innate immunity usually primes adaptive immunity to confer this long-term protection.
T230 143502-143732 Sentence denotes It is not a lack of existing immune-monitoring methodologies but rather perhaps a lack of their correct implementation in the continued analysis of vaccinated individuals that are hampering the gaining of this important knowledge.
T231 143733-144139 Sentence denotes Therefore it seems there is an urgent need for the standardization of vaccine methodologies adequately measuring effector memory T cell responses and host-immune evasion mechanisms in appropriate animal models and humans and through the use of multiparametric immune-monitoring platforms able to simultaneously document numerous immune cell phenotypes across time postexposure, vaccination, or rechallenge.
T232 144140-144445 Sentence denotes The importance of global development of standardized procedures of biospecimen banking from vaccinated individuals cannot be understated and will provide unprecedented statistical power in the analysis of the balance between the innate and adaptive immune arms conferring lifelong resistance to infection.
T233 144446-144704 Sentence denotes The standardization of these methodologies should better assist future rational design of vaccines and boost confidence toward the mass production and stockpiling of these critical prophylactic measures against otherwise crippling and lethal viral disorders.
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