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CORD-19:038354e8830fe01feb621a12e8a8c467a15b6354 JSONTXT 9 Projects

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Id Subject Object Predicate Lexical cue
T1 0-67 Sentence denotes Conference report Current research on respiratory viral infections:
T2 68-99 Sentence denotes Fifth International Symposium ଝ
T3 101-109 Sentence denotes Abstract
T4 112-285 Sentence denotes The Fifth International Symposium on Respiratory Viral Infections was convened by The Macrae Group (New York, NY) in Casa de Campo, Dominican Republic on 5-8 December 2002 .
T5 286-673 Sentence denotes This symposium provides an annual forum for virologists, vaccinologists, clinicians, pharmacologists, and public health specialists to discuss recent advances in respiratory virus research in an interdisciplinary fashion and summaries of four previous meetings have been published in Antiviral Research (Ison et al., 2002; Kaiser et al., 1999; Munoz et al., 2000; Schmidt et al., 2001) .
T6 674-1011 Sentence denotes The spectrum of discussion ranged from basic virology and pathogenesis to epidemiology, immunology, and management strategies, with particular attention to vaccines, antivirals, and economic issues. rors because of a lack of proof reading mechanisms that, in turn, results in the production of quasi-species in most infected individuals.
T7 1012-1164 Sentence denotes As a consequence of these errors, there is incredible genetic variability that results in continuous antigenic drifts and intermittent antigenic shifts.
T8 1165-1285 Sentence denotes These shifts have resulted in the introduction of new strains of virus that often resulted in a pandemic (see Table 1 ).
T9 1286-1437 Sentence denotes Inter-pandemic influenza is responsible for over 20,000 deaths per year in addition to significant morbidity and loss of work (Thompson et al., 2003) .
T10 1438-1529 Sentence denotes The most important pandemic of the past century was the Spanish Influenza pandemic of 1918.
T11 1530-1617 Sentence denotes The virus infected 28% of all Americans and resulted in 675,000 deaths in the US alone.
T12 1618-1783 Sentence denotes The death rate among young adults, aged 15-34 years, was 20 times higher than in previous years and depressed the life expectancy of Americans by more than 10 years.
T13 1784-1871 Sentence denotes The pace and severity of the pandemic is best documented in its history in New Zealand.
T14 1872-1958 Sentence denotes On 12 October 1918, several members on board the SS Niagara became ill with influenza.
T15 1959-2076 Sentence denotes Since the boat was carrying Prime Minister Massey, the Minister of Health failed to enforce a quarantine on the boat.
T16 2077-2262 Sentence denotes As a result, influenza infected much of the city of Auckland, such that by the first week in November it was dubbed the "City of the Dead" and had resulting breakdown of civil services.
T17 2263-2354 Sentence denotes By November 12, there were two full death trains per day to carry the dead out of the city.
T18 2355-2429 Sentence denotes Like the US, the mortality rate was highest among people aged 20-44 years.
T19 2430-2599 Sentence denotes Interestingly, the Maori had a higher death rate (43.3/1000) than Europeans (7.6/1000), a finding that suggests prior exposure to influenza may have minimized mortality.
T20 2600-2754 Sentence denotes Jeffrey Taubenberger has sequenced the HA, NA, NS, M, and NP genes of the 1918 Spanish influenza virus and found that it is closely related to swine H1N1.
T21 2755-2847 Sentence denotes Unfortunately, the molecular basis of the high pathogenicity of this virus is still unknown.
T22 2848-3079 Sentence denotes Likewise, it is unclear if the virus, the hemagglutinin and neuraminidase genes of which derived 1977-present No from an avian influenza virus, directly infected man and then infected pigs or if pigs served as an intermediate host.
T23 3080-3218 Sentence denotes Studies of more recent viruses has demonstrated that aquatic birds are the natural reservoirs of all influenza A viruses in other species.
T24 3219-3376 Sentence denotes In these wild aquatic birds, influenza virus replicates predominately in the intestinal tract and transmission via the fecal-oral route, often through water.
T25 3377-3535 Sentence denotes There are a limited number of host-specific lineages of influenza viruses in birds and there is a geographical separation into Eurasian and American lineages.
T26 3536-3674 Sentence denotes Influenza viruses in their natural avian reservoir are in evolutionary stasis, but rapid evolution occurs after transmission to new hosts.
T27 3675-3850 Sentence denotes It is felt that swine are significant intermediate hosts as they are susceptible to all influenza A subtypes and have receptors for both avian and mammalian influenza viruses.
T28 3851-4050 Sentence denotes Acquisition of avian influenza genes by swine influenza viruses has been documented in H1N1 isolates in Europe, H4N6 in Canada, and H9N2 in China, although these latter two instances were transitory.
T29 4051-4252 Sentence denotes In the United States, H3N2 viruses became a problem in pigs in 1998 when the infection was associated with respiratory signs, high fever (104-107 • F), high morbidity (100%), and high risk of abortion.
T30 4253-4338 Sentence denotes The responsible viruses were highly transmissible and resulted in variable mortality.
T31 4339-4560 Sentence denotes Interestingly, analysis of three of the porcine H3N2 viruses revealed that the virus has undergone triple reassortment and had acquired human PB1, HA, and NA genes, porcine NP, M, and NS genes, and avian PA and PB2 genes.
T32 4561-4674 Sentence denotes There is growing evidence, too, that H1N1 swine influenza A viruses are acquiring avian polymerase genes as well.
T33 4675-4903 Sentence denotes Although pigs appear to be an important reservoir and mixing pot for potential human influenza viruses, the chicken H5N1 and H9N2 viruses that have recently emerged in Asia suggest chickens may also be an important intermediary.
T34 4904-5094 Sentence denotes In 1997, a reassortant H5N1 virus containing H5 Goose/Guangdong/1/96-like HA and other genes from H9N2 Quail/HK/G1/97-like and H6N1 duck/HK/W312/97like viruses began circulating in chickens.
T35 5095-5161 Sentence denotes The virus was transmitted to 18 humans and resulted in six deaths.
T36 5162-5307 Sentence denotes Patients who became infected had high fevers, nausea, vomiting, diarrhea, and pneumonia in addition to alterations in hepatic and renal function.
T37 5308-5443 Sentence denotes Fortunately there was no human-to-human transmission and the outbreak was halted by the massive slaughter of all poultry in the region.
T38 5444-5669 Sentence denotes Additional studies of the local chicken market demonstrated that when H5N1 virus infected a chicken it resulted in its death, while chickens co-infected with H9N2 viruses were protected from illness but efficiently shed H5N1.
T39 5670-5869 Sentence denotes The H5N1 virus still appears to be a problem with re-emergence of a different H5N1 virus in 2001; fortunately an outbreak of human infections was prevented by the massive slaughter of chickens again.
T40 5870-6015 Sentence denotes Unfortunately, multiple different lineages of H5N1 viruses, all with the Goose/Guangdong HA are still present in local chickens. [Editorial note:
T41 6016-6154 Sentence denotes In February 2003 infections with an avian influenza A/H5N1 virus resulted in two deaths in a Hong Kong family that visited southern China.
T42 6155-6450 Sentence denotes During the current influenza season, avian influenza A/H5N1 has again caused disease and death throughout Asia.] Upon further investigation of these H5N1 outbreaks in chickens and humans, it became clear that quail might play a significant role in interspecies transmission of influenza viruses.
T43 6451-6606 Sentence denotes It appears that quail acquire infection from fecal sources and then replicate virus in their respiratory tract with evidence of tracheal shedding of virus.
T44 6607-6722 Sentence denotes The outbreaks in chickens were associated with the reintroduction of H6N1 and H9N2-infected quail into the markets.
T45 6723-6871 Sentence denotes To address the concerns that quail are intermediates in the transmission of influenza, quail have been banned from all poultry markets in Hong Kong.
T46 6872-7111 Sentence denotes In addition, ducks and geese, which have been recognized in the past as reservoirs for influenza viruses, are imported separately from all other poultry and are killed and sold chilled instead of the previous practice of selling them live.
T47 7112-7236 Sentence denotes Finally, all markets are emptied and cleaned monthly with the hopes of reducing transmission of influenza among the poultry.
T48 7237-7396 Sentence denotes Since the H5N1 virus has caused severe disease in humans already and is a potential pandemic threat, several researchers are looking for its virulence factors.
T49 7397-7525 Sentence denotes Clinical experience has documented that H5N1 virus kills all chickens it infects, unless there is coinfection with H9N2 viruses.
T50 7526-7583 Sentence denotes Likewise, the virus is neurovirulent in mice and ferrets.
T51 7584-7692 Sentence denotes In humans, mortality is high and post-mortem examination in two individuals found very high cytokine levels.
T52 7693-7851 Sentence denotes Several studies subsequently documented that the NS1 protein of the H5N1 was an antagonist of the antiviral activity of several cytokines (Seo et al., 2002) .
T53 7852-8039 Sentence denotes Genetic comparison of the NS1 gene of H5N1 viruses from 1997 and 2001 and other human, avian, swine, and equine viruses identified a single Asp92Glu mutation in the virulent H5N1 viruses.
T54 8040-8262 Sentence denotes Using reverse genetics, it was found that infection due to the viruses with the mutation resulted in greater viral shedding and symptoms in pigs and lacked inhibition of replication typically induced by cytokines in vitro.
T55 8263-8510 Sentence denotes Furthermore, in-vitro infection of human primary macrophages with H5N1/97 virus up-regulated expression of mRNA encoding TNF-␣, IFN-␤, IL-1␤, MCP-1, MIP-1␣/␤, RANTES, IFN-␣, and IL-12 and caused increased elaboration of pro-inflammatory cytokines.
T56 8511-8649 Sentence denotes As our understanding of current and previous pandemic viruses expands, so do our techniques to learn about the virus and its pathogenesis.
T57 8650-8735 Sentence denotes One of the major advances is the multi-plasmid reverse genetics system for influenza.
T58 8736-9018 Sentence denotes This system allows scientists to make influenza viruses to order, to rapidly prepare high growth reassortants for vaccines, to rapidly prepare subtype-specific vaccines for pandemic preparedness, and to better understand the molecular basis of virulence and host range of the virus.
T59 9019-9079 Sentence denotes Unfortunately, powerful technique brings several challenges.
T60 9080-9346 Sentence denotes Since it is so easy to make reassortant viruses, it could be possible to create viruses with several pathogenic genes or viruses that are highly resistant to antivirals resulting in highly transmissible and lethal agents that could be used as agents of bioterrorism.
T61 9347-9487 Sentence denotes In this regard, dangerous constructs need to be contained within BSL3+ level facilities, limiting the number of centers that can study them.
T62 9488-9705 Sentence denotes To prepare for the future, with the current risks of bioterrorism and pandemic influenza, it is essential that surveillance, using global WHO human and animal networks, and yet to be developed biosensors, be expanded.
T63 9706-9907 Sentence denotes Additionally, vaccines and their production need to be studied since it currently takes 6 months to prepare a new vaccine and there may not be a mild warning wave of infection before the next pandemic.
T64 9908-9995 Sentence denotes Lastly, antivirals need to be stockpiled and new antiviral agents need to be developed.
T65 9996-10158 Sentence denotes Human metapneumovirus (hMPV) was discovered and described by the group at Erasmus University in 2001 (van den Hoogen et al., 2001 (van den Hoogen et al., , 2001 .
T66 10159-10550 Sentence denotes Since then, serologic studies have documented infection in patients throughout the world, including the Dutch Antilles, Barbados, Slovakia, Finland, The Netherlands, Sudan, Somalia, India, and Vietnam Chan et al., 2002; Falsey et al., 2003; Freymouth et al., 2003; Howe, 2002; Jartti et al., 2002a; Nissen et al., 2002; Pelletier et al., 2002a,b; Peret et al., 2002; Stockton et al., 2002) .
T67 10551-10701 Sentence denotes Most children first acquire the infection during the first 5 years of life with infection documented in over 50% of infants in the first year of life.
T68 10702-10822 Sentence denotes Although most infections have been documented in children, up to 20% of infections occur in patients over the age of 60.
T69 10823-10983 Sentence denotes Preliminary data suggests that hMPV may be responsible for approximately 7-8% of viral respiratory tract illnesses (RTI) in children and 2-3% of RTIs in adults.
T70 10984-11154 Sentence denotes Among the primates, rhesus monkeys (71%) and chimps (59%) frequently have antibodies to hMPV, while they are less frequently found in orangutans (33%) and gib-bons (13%).
T71 11155-11423 Sentence denotes Experimental challenge studies were done in cynomolgus macaques, guinea pigs, ferrets, chickens and turkeys; birds failed to become infected and only the macaques developed disease with evidence of histopathological changes in tissues from the nose to the bronchioles.
T72 11424-11527 Sentence denotes Repeated infection of the macaques resulted in shorter duration of shedding with subsequent infections.
T73 11528-11765 Sentence denotes Serum IgA antibodies failed to be detectable until after a second infection; secondary infection resulted in a low level of hMPV antibody production but failed to induce heterologus antibodies against the related avian pneumovirus (APV).
T74 11766-11901 Sentence denotes Sequencing of the N, P, M, F, M2, SH, G, and L genes indicates that hMPV is most closely related to APV (van den Hoogen et al., 2002) .
T75 11902-11996 Sentence denotes Hydrophilicity plots of the F revealed two hydrophobic regions with similarity to APV and RSV.
T76 11997-12040 Sentence denotes The G protein has five glycosylation sites.
T77 12041-12364 Sentence denotes There appear to be two genetic and serotypic clusters of hMPV with two subclusters of each cluster (A1, A2, B1, B2). (Guy Boivin, Laval University, Québec, Canada) A new paramyxovirus, the human metapneumovirus (hMPV), has been recently isolated from Dutch children with respiratory symptoms (van den Hoogen et al., 2001) .
T78 12365-12484 Sentence denotes However, the prevalence, clinical presentation, and severity of hMPV infections in children have not been well studied.
T79 12485-12784 Sentence denotes A multiplex real-time PCR assay was used to detect viral pathogens (influenza A, influenza B, respiratory syncytial virus (RSV), and hMPV) in nasopharyngeal aspirates of hospitalized children (0-3 years) with acute respiratory tract infections (ARTI) during then 2001-2002 winter and spring seasons.
T80 12785-13142 Sentence denotes Children hospitalized for surgery without respiratory symptoms were used as controls. hMPV was detected in 5.8% of the 208 children hospitalized for ARTI, compared to 51% for RSV and 21.6% for influenza A; no virus was detected in 29.8% of symptomatic patients and 6.8% had more than one pathogen including one case of coinfection with hMPV and influenza A.
T81 13143-13192 Sentence denotes None of the viruses were detected in 51 controls.
T82 13193-13313 Sentence denotes Most RSV and influenza infections occurred in January-February, whereas peak hMPV activity was seen in March-April 2002.
T83 13314-13767 Sentence denotes Overall, the clinical presentation and complications associated with hMPV infection were very similar to those caused by RSV (fever 67% versus 57%, cough 100% versus 99%, rhinorrhea 92% versus 91%, and wheeze 92% versus 95% for hMPV and RSV, respectively). hMPV was associated with bronchiolitis in 66.7%, otitis media in 50%, and pneumonia in 16.7% of infected children; no hMPV children were sick enough to require admission to an intensive care unit.
T84 13768-13870 Sentence denotes Mean hospital stays were 5.5, 5.8, and 5.0 days for children infected with hMPV, RSV, and influenza A.
T85 13871-14024 Sentence denotes Although severe hMPV infections are less frequent than those caused by hRSV, the clinical presentation of the two viral pathogens is virtually identical.
T86 14025-14217 Sentence denotes Dr. Boivin also discussed an outbreak investigation in which there appears to be a nosocomial outbreak of hMPV in a nursing home, giving further information about the impact of this new virus.
T87 14218-14316 Sentence denotes In summary, hMPV is a true respiratory pathogen associated with significant morbidity in children.
T88 14317-14321 Sentence denotes 3.3.
T89 14322-14531 Sentence denotes Dual respiratory viral infections: two worse than one? (Robert Couch, Baylor College of Medicine, Houston, TX) Multiple respiratory viruses can be detected sometimes in patients with respiratory tract illness.
T90 14532-14704 Sentence denotes In various studies, the frequency of dual infection has ranged from 0 to 40% of virus-infected patients, with most studies documenting dual infections in 0-10% of patients.
T91 14705-14782 Sentence denotes The frequency of dual infection appears to be higher in children than adults.
T92 14783-14868 Sentence denotes The types of diagnostic techniques utilized greatly impacts the detection of viruses.
T93 14869-15192 Sentence denotes In a study of 4336 adult patients, many with underlying lung disease, who developed 1341 respiratory infections, dual infection was documented in 1.9% of patients when cell culture alone was used, 8.1% when serology was added to culture, and 11.6% when RT-PCR was added to the previous two techniques (Drews et al., 1997) .
T94 15193-15414 Sentence denotes The most frequently isolated viruses from patients with dual infections included picornaviruses (n = 33), influenza A (28), coronaviruses (22), RSV (21), adenoviruses (12), parainfluenza viruses (12), and influenza B (7).
T95 15415-15556 Sentence denotes The three most common combinations were picornaviruses with influenza A (n = 10), cornoavirus (10), and adenovirus (7) (Drews et al., 1997) .
T96 15557-15712 Sentence denotes During the question and answer period, Sebastian Johnston reported that in his study of respiratory viral illnesses in children with a history of wheezing:
T97 15713-15800 Sentence denotes 15% of patients had dual infections and 5% with triple infections during exacerbations.
T98 15801-15871 Sentence denotes The impact of dual infections on disease course has also been studied.
T99 15872-16351 Sentence denotes In volunteers who were co-inoculated with HRV 15 and another picornavirus (simultaneous infection) or infected with a picornavirus approximately 2 weeks after initial HRV 15 infection (sequential infection), those infected with two viruses simultaneously had no difference in virus shedding or disease severity, whereas those who had sequential infection had reduced virus shedding and disease severity, in comparison to volunteers only infected with HRV15 (Fleet et al., 1965) .
T100 16352-16523 Sentence denotes The exact mechanism for this reduction of viral shedding and symptom severity is not known but transient immunity from the previous infection may contribute to the effect.
T101 16524-17055 Sentence denotes In children presenting with lower respiratory illness with RSV alone or in combination with another respiratory virus, some studies did not find differences in the severity or duration of the illness, but two studies documented increased severity of symptoms and one documented increased duration of illness (Andreoletti et al., 2000; Cate et al., 1964; Meissner et al., 1984; Papadopoulos et al., 2002a; Portnoy et al., 1966; Ray et al., 1993; Smith et al., 1980; Subbarao et al., 1989; Tristram et al., 1988; Tsai et al., 2001) .
T102 17056-17215 Sentence denotes Preliminary data from Dr. Johnston's study also documented a clear increase in severity of the asthma exacerbation with increasing number of infecting viruses.
T103 17216-17366 Sentence denotes Although not well controlled for in these studies, the timing of infection and the type of viruses likely impact the duration and severity of illness.
T104 17367-17644 Sentence denotes Available information is insufficient for firm conclusions on the illness consequences of dual respiratory viral infections, and future studies should be address the relationships between illness severity and etiology, time course, and quantitative virology of dual infections.
T105 17645-17649 Sentence denotes 3.4.
T106 17650-17893 Sentence denotes Respiratory pathogens in the first year of life: a birth cohort study using PCR (Sebastian Johnston, Imperial College London, UK) Numerous studies have documented an association between asthma exacerbations and respiratory viral illness (RVI).
T107 17894-18035 Sentence denotes Approximately 85% of children and 60% of adults presenting with asthma exacerbations have detectable virus at the time of their exacerbation.
T108 18036-18169 Sentence denotes Several recent studies have expanded on our understanding of the epidemiology of RVIs and their relationship to asthma exacerbations.
T109 18170-18416 Sentence denotes In unpublished studies, the presenter's group performed viral culture and PCR for RSV and human rhinoviruses (hRV) on nasal aspirates from 80 children aged 0-16 years who were hospitalized with upper respiratory tract illness (URTI) and wheezing.
T110 18417-18635 Sentence denotes Ninety-six percent of children under 2 years of age were positive for one of the two viruses (80% RSV, 40% rhinovirus, 20% dual infection), while 80% of children 2 years and older had detectable virus (66% rhinovirus).
T111 18636-18843 Sentence denotes These results confirm the high frequency of RVI in such patients and the age-related changes in pathogen distribution observed in earlier studies with predominance of rhinovirus infections after age 2 years.
T112 18844-18956 Sentence denotes A second study collected nasal aspirates within 24 h of admission among 118 infants admitted with bronchiolitis.
T113 18957-19109 Sentence denotes Seventy-three percent of these patients had virus detected by PCR (72% RSV, 29% hRV, 9% adenovirus, 3% influenza, 3% parainfluenza, and 3% coronavirus).
T114 19110-19165 Sentence denotes Dual infection was documented in 19.5% of the patients.
T115 19166-19318 Sentence denotes Patients with RSV infection tended to be younger (3.2 months versus 5.2 months, P = 0.005) and with a higher birth weight than those with hRV infection.
T116 19319-19663 Sentence denotes Patients with hRV infections alone were hospitalized earlier in an illness episode (1.8 days versus 3.1 days, P = 0.001) and had a higher likelihood of having a clinical severity score on admission above the 50th percentile (OR 4.9, P = 0.022) after controlling for age, gender, birth weight, presence of fever, and day of disease on admission.
T117 19664-19938 Sentence denotes Patients with dual infections were hospitalized later in illness than those with RSV or hRV alone (4.7 days versus 3.1 days (P = 0.028) versus 1.8 days (P = 0.001)), consistent with the interpretation of dual infection being a sequential event (Papadopoulos et al., 2002b) .
T118 19939-20194 Sentence denotes Another recent unpublished epidemiologic study, the Western Australian Childhood Asthma study, conducted by Drs. Peter Sly, Patrick Holt, and Merci Kusel, enrolled 263 newly born infants who had at least one parent with physician-diagnosed atopic disease.
T119 20195-20411 Sentence denotes All acute respiratory illnesses were recorded during the first year of life and home visits by a study nurse were arranged within 24 h of onset of illness for assessment of symptoms and collection of nasal aspirates.
T120 20412-20473 Sentence denotes Two control visits were done when the child was asymptomatic.
T121 20474-20626 Sentence denotes During the first 6 months of life and subsequent 6 months, 59 and 86% of the children, respectively, developed an upper respiratory tract illness (URI).
T122 20627-20822 Sentence denotes Non-wheezy lower respiratory tract illness (LRI) developed in 28 and 52% of children during the first and subsequent 6 months, respectively, and wheezy LRIs developed in 10 and 26%, respectively.
T123 20823-21060 Sentence denotes Among the first 656 samples from July 1996 to February 1998 (369 ARI, 260 controls), 19% of the controls were positive (11% picornavirus, 8% RSV) compared to 65% of the ARI samples (55% picornavirus, 10% RSV, and 3% with dual infection).
T124 21061-21354 Sentence denotes Among those with URI, 84% had picornaviruses, 11% had RSV, and 5% had dual infections; non-wheezing LRI was associated with picornavirus detection in 74%, RSV in 23%, and dual infection in 3%; wheezing LRI was associated with picornavirus in 70% of cases, RSV in 22%, and dual infection in 8%.
T125 21355-21422 Sentence denotes The ratio of URI to LRI was 1.9:1 for picornavirus and 1:1 for RSV.
T126 21423-21723 Sentence denotes Although RSV is perhaps more likely to be associated with severe lower respiratory tract illness, these data indicate that rhinoviruses are major respiratory pathogens during the first year of life and cause about three times as many LRIs in the first year of life as RSV in non-hospitalized infants.
T127 21724-21801 Sentence denotes The specific picornavirus that cause these illnesses remain to be identified.
T128 21802-21968 Sentence denotes Further PCR tests for coronaviruses, influenza A and B, parainfluenza viruses 1-3, adenoviruses, hMPV, Mycoplasma pneumonia, and Chlamydia pneumoniae are in progress.
T129 21969-21973 Sentence denotes 3.5.
T130 21974-22052 Sentence denotes Molecular epidemiology of adenovirus type 7 respiratory infections (Adriana E.
T131 22053-22242 Sentence denotes Kajon, Lovelace Respiratory Research Institute, Albuquerque, NM) The adenoviruses constitute an important group of human pathogens with a capacity to cause a wide range of illnesses in man.
T132 22243-22372 Sentence denotes Adenoviruses are responsible for 5-10% of the cases of pediatric acute respiratory infections (ARI) that require hospitalization.
T133 22373-22454 Sentence denotes Nosocomial outbreaks of adenovirus respiratory infection are frequently reported.
T134 22455-22590 Sentence denotes The adenovirus virion consists of a non-enveloped icosohedral capsid enclosing a double-stranded DNA genome of approximately 36,000 bp.
T135 22591-22816 Sentence denotes The human adenovirus family currently comprises 51 serotypes that are classified into six species (formerly subgenera), A-F, based on their genomic characteristics, tropism, associated disease and other biological properties.
T136 22817-22992 Sentence denotes Respiratory disease is mainly caused by adenovirus serotypes classified within subspecies B1 (Ad3, Ad7, Ad16, Ad21, Ad50), species C (Ad1, Ad2, Ad5, Ad6), and species E (Ad4).
T137 22993-23288 Sentence denotes Among the most prevalent serotypes associated with human respiratory disease, adenovirus type 7 (Ad7) is a frequent cause of severe clinical presentations in children and young adults, in whom it causes epidemics of acute febrile respiratory illness among military recruits (Ryan et al., 2002) .
T138 23289-23454 Sentence denotes Extrapulmonary manifestations, rare fatalities, and residual lung damage are observed in association with Ad7 infection (Becroft, 1967; Steen-Johnsen et al., 1969) .
T139 23455-23628 Sentence denotes Affected patients surviving severe disease may have chronic sequelae in the form of bronchiectasis, bronchiolitis obliterans and hyperlucent lung (Murtagh and Kajon, 1997) .
T140 23629-23748 Sentence denotes Restriction enzyme analysis of Ad7 strains has shown the existence of considerable intra-serotypic genetic variability.
T141 23749-23965 Sentence denotes Over the last two decades reports of molecular epidemiological studies of Ad7 infection have shown that certain genome types predominate in an area for long periods of time and then are replaced by a new genome type.
T142 23966-24146 Sentence denotes The molecular bases of these substitutions of one genome type for another, called genome type "shifts", and the selective forces driving adenovirus evolution in nature are unknown.
T143 24147-24236 Sentence denotes Moreover, the impact of genetic variability on adenovirus virulence is poorly understood.
T144 24237-24337 Sentence denotes A shift from Ad7c to Ad7b occurred in Europe in 1969 and in Australia in 1975 (Wadell et al., 1985 .
T145 24338-24550 Sentence denotes A shift from Ad7b to Ad7d occurred in China between 1965 and 1980 (Li et al., 1996 , and a shift from Ad7c to Ad7h took place in the South America (Argentina, Chile and Uruguay) in 1986 (Kajon and Wadell, 1994) .
T146 24551-24876 Sentence denotes Ad7b is still the most prevalent genome type isolated in Europe and North America and Ad7h is still recovered from the nasopharyngeal secretions of children hospitalized for ARI in the South America, observations suggesting an adaptive advantage of their array of genes over the preceding prevalent genome type in the region.
T147 24877-25190 Sentence denotes Interestingly, Ad7h has been recently detected in the United States and Japan in association with respiratory illness and in Brazil in association with acute conjunctivitis, findings that suggest a recent introduction and dissemination of this virus from previously geographically restricted areas of circulation.
T148 25191-25407 Sentence denotes Ad7d 2 , originally reported to circulate in China and later on in Japan and Israel, has been identified in recent outbreaks of ARI in the United States affecting children and military trainees Gerber et al., 2001) .
T149 25408-25632 Sentence denotes The major neutralizing epitopes of different Ad7 genome types, the hypervariable regions of the hexon, exhibit a high degree of conservation at the amino acid level with the exception of Ad7p and Ad7d (Li and Wadell, 1999) .
T150 25633-25743 Sentence denotes These findings suggest that genome type shifts are not strongly determined by selection of antigenic variants.
T151 25744-25967 Sentence denotes We have initiated the study of genetic variability in regions of the viral genome encoding immunomodulatory functions (Horwitz, 2001) and have identified sequence differences in the E3 region among various Ad7 genome types.
T152 25968-26112 Sentence denotes The occurrence of intermediate variants that have a 7-like hexon gene and a 3-like fiber gene has also been detected (Kajon and Wadell, 1996b) .
T153 26113-26340 Sentence denotes However, the implications of genetic variation for human disease are still unclear and will remain elusive until Ad7 genome types are characterized phenotypically and a correlation between genotype and phenotype is established.
T154 26341-26517 Sentence denotes The Spanish Flu pandemic of 1918 resulted in significant morbidity and mortality in part because of the high rate of viral pneumonias and lower respiratory tract complications.
T155 26518-26629 Sentence denotes Recently, certain genes of the virus have been sequenced to help determine those responsible for its virulence.
T156 26630-26784 Sentence denotes Reverse genetics has been used to create viruses with an influenza A/WSN background, that contain genes from the 1918 strain or more contemporary strains.
T157 26785-26973 Sentence denotes In a recent experiment, conducted in a BSL4 laboratory, three viruses were created: a wild-type WSN virus, a WSN virus with 1918 HA and NA genes, and a WSN virus with 2001 HA and NA genes.
T158 26974-27094 Sentence denotes In mice the LD 50 for the 2001 HA/NA virus was >10 5 , compared to 10 3.1 for both the wild type and 1918 HA/NA viruses.
T159 27095-27239 Sentence denotes Lung titers of infected mice were higher in the wild-type (10 6.4 ) and the 1918 HA/NA viruses (10 6.1 ) than in the 2001 HA/NA virus (10 4.1 ).
T160 27240-27409 Sentence denotes The degree of lung inflammation was most severe, with evidence of significant hemorrhage, in mice infected with the 1918 HA/NA virus and least with the 2001 HA/NA virus.
T161 27410-27496 Sentence denotes Viral antigen was distributed differently in the lungs for the three viruses at day 6.
T162 27497-27706 Sentence denotes The WSN wild-type virus was predominant in the bronchioles; the 1918 HA/NA virus had evidence of diffuse involvement of the pulmonary parenchyma; the 2001 HA/NA virus had minimal staining of the lower airways.
T163 27707-27799 Sentence denotes Lastly, another recombinant virus was constructed with the A/Memphis/8/88 (H3N2) background.
T164 27800-27905 Sentence denotes The wild-type virus was non-lethal in mice, but the virus with 1918 HA and NA genes was uniformly lethal.
T165 27906-28017 Sentence denotes Such findings indicate that HA and NA of the 1918 virus are linked in part to its virulence in mammalian hosts.
T166 28018-28099 Sentence denotes Protection against the 1918 virus could be achieved by antivirals and antibodies.
T167 28100-28261 Sentence denotes The currently available anti-influenza agents have excellent activity against the 1918 strain of influenza A responsible for the pandemic (Tumpey et al., 2002) .
T168 28262-28350 Sentence denotes Antibodies have been tested in residual blood samples of patients before and after 1918.
T169 28351-28480 Sentence denotes High levels of antibodies directed against the 1918 HA are present in blood in patients born before 1918 but generally not after.
T170 28481-28705 Sentence denotes The concept of original antigenic sin, in which humans exposed or vaccinated to influenza will produce higher antibodies against the first virus they were exposed to than against subsequent viruses, may explain this finding.
T171 28706-28852 Sentence denotes In turn, this could partly explain why older patients may have been relatively protected relative to younger individuals during the 1918 pandemic.
T172 28853-28994 Sentence denotes Another question that has recently been answered, although the significance of it is still under investigation, is how the virus is packaged.
T173 28995-29124 Sentence denotes Analysis of the genes of influenza documented that all 8 segments of influenza A have conserved, non-coding regions at both ends.
T174 29125-29223 Sentence denotes Several studies were then conducted to determine if segment incorporation was random or selective.
T175 29224-29324 Sentence denotes First, viruses with 6, 7, and 8 segments were created to assess the efficiency of virion production.
T176 29325-29441 Sentence denotes In cell culture, virus replication was greatest when all 8 segments were present and least when only 6 were present.
T177 29442-29758 Sentence denotes Next, reverse genetics was used to create two viruses, one had the NA gene replaced with the gene for green florescent protein (GFP) with the conserved non-coding flanking base pairs (NCFBP) before and after (NCFBP-GFP-NCFBP) and another in which the GFP was flanked by NCFBP and the NA gene (NCFBP-NA-GFP-NA-NCFBP).
T178 29759-29862 Sentence denotes In the GFP only segment, only 0.1% of infected cells made GFP as compared to 91% of the NA-GFP segment.
T179 29863-29998 Sentence denotes This suggests that, although the NCFBP is required, the coding region, in this case NA, is required for incorporation into new virions.
T180 29999-30149 Sentence denotes Additional studies documented that this virion incorporation signal (VIS), which frequently contained UAU coding regions, was unique for each segment.
T181 30150-30265 Sentence denotes The genes for the HA, NP, and M require VIS at both ends while the NA and NS genes only require a VIS at the 3 end.
T182 30266-30550 Sentence denotes Lastly, the packaging of segments within the virion was assessed through electron microscopy, which demonstrated that there is likely an interaction between base pairs on each of the segments that results in the segments aligning with one another in a fixed way (Fujii et al., 2003) .
T183 30551-30658 Sentence denotes These interactions require greater study as this is a potential target for drugs or vaccines of the future.
T184 30659-30899 Sentence denotes The ability to recover infectious respiratory syncytial virus (RSV) and parainfluenza viruses (PIV) serotypes 1, 2 and 3 from cloned cDNAs, a technique called "reverse genetics", offers a new approach to developing live attenuated vaccines.
T185 30900-31080 Sentence denotes The main challenge in creating a potential live vaccine is to develop a virus that is both highly and stability attenuated while maintaining a satisfactory level of immunogenicity.
T186 31081-31293 Sentence denotes Reverse genetics have be used to achieve this goal by creating an array of potential mutations, fine tuning the level of attenuation, increasing the immunogenicity of the virus, and decreasing its reactogenicity.
T187 31294-31525 Sentence denotes RSV and the PIVs have modular genome organizations (3 -N-P-M-F-HN-L-5 for the PIVs and 3 -NS1-NS2-N-P-M-SH-G-F-M2-L-5 for RSV) and short cis-acting RNA signals that make for viruses that are highly amenable to genetic manipulation.
T188 31526-31807 Sentence denotes Vaccine candidates for RSV (strain A2 of subgroup A) had previously been developed by conventional biological means, involving passage at suboptimal temperature ("cold passage" [cp]) followed by chemical mutagenesis and the identification of temperature sensitive (ts) derivatives.
T189 31808-32035 Sentence denotes Several of these strains were evaluated clinically and one, called cpts248/404, was shown to be infectious, immunogenic, and protective against a second vaccine dose in 1-2-month-old infants, the target age for RSV vaccination.
T190 32036-32143 Sentence denotes However, it retained the ability to cause mild nasal congestion and thus would require further attenuation.
T191 32144-32191 Sentence denotes This proved unfeasible by conventional methods.
T192 32192-32406 Sentence denotes These viruses were sequenced and their mutations were identified and the phenotype conferred by each was confirmed by incorporation into wild type recombinant virus, providing a list of known attenuating mutations.
T193 32407-32577 Sentence denotes This list was expanded by finding that a number of RSV genes, including NS1, NS2, SH and M2-2, could be deleted to yield derivatives that proved to be attenuated in vivo.
T194 32578-32794 Sentence denotes This new knowledge was applied to reverse genetics to create two new viruses, 248/404/ SH and 248/404/1030/ SH, the second of which shows promise in early clinical trials and appears to be free of residual virulence.
T195 32795-32970 Sentence denotes Other viruses are being developed that contain some of the more highly-attenuating gene deletions, or which contain various combinations of gene deletions and point mutations.
T196 32971-33282 Sentence denotes Reverse genetics also can be used to increase gene stability to prevent reversion by incorporating multiple point mutations, by designing amino acid substitutions to involve at least two nucleotide changes compared to assignments yielding wild type or wild type-like phenotypes, and by employing gene deletions.
T197 33283-33468 Sentence denotes Further investigation suggests that moving the G and F genes to a more proximal location in the genome results in increased efficiency of G and F expression and enhanced immunogenicity.
T198 33469-33657 Sentence denotes Likewise, deletion of the M2-2 ORF, a putative regulatory factor, resulted in a shift in RNA synthesis from RNA replication to transcription, with concomitant increased antigen expression.
T199 33658-33921 Sentence denotes It might also be possible to reduce the reactogenicity of an RSV vaccine using strategies developed from immunobiological studies: one example would be to ablate the secreted form of G, which has been implicated in preferential sensitization of Th2 T lymphocytes.
T200 33922-34127 Sentence denotes Reverse genetics also was used to create RSV subgroup B vaccine candidates by replacing the G and F protective antigen genes of RSV subgroup A vaccine candidates with their subgroup B G and F counterparts.
T201 34128-34206 Sentence denotes Reverse genetics has also been applied to hPIV3 to develop vaccine candidates.
T202 34207-34325 Sentence denotes A promising hPIV3 vaccine candidate, cp45, had previously been developed by the conventional approach of cold passage.
T203 34326-34557 Sentence denotes Nucleotide sequencing identified 15 potential attenuating mutations, which were characterized by reverse genetics: the major attenuating mutations were found to involve three ts mutations in L and three non-ts mutations in C and F.
T204 34558-34875 Sentence denotes Reverse genetics was used to develop additional means of attenuation, which included silencing the C, V and D open reading frames as well as the novel strategy of "importing" mutations into hPIV3 from corresponding genes in heterologous viruses using amino acid sequence alignments to identify corresponding residues.
T205 34876-35061 Sentence denotes Bovine (b)PIV3 represents a completely different vaccine strategy, one that is based on the finding that bPIV3 is antigenically related to hPIV3 but is naturally attenuated in primates.
T206 35062-35162 Sentence denotes This is a "Jennerian" strategy, analogous to the use of cowpox virus as a vaccine against small pox.
T207 35163-35401 Sentence denotes This strategy was improved by using reverse genetics to construct a version of bPIV3 in which the F and HN major antigenic determinants were replaced by their hPIV3 counterparts, thus providing for fully homologous immunity against hPIV3.
T208 35402-35502 Sentence denotes This chimeric virus retained the attenuation phenotype and represents a promising vaccine candidate.
T209 35503-35646 Sentence denotes The basis for the host range restriction of bPIV3 was investigated by the replacement of individual genes in hPIV3 with their bPIV3 couterpart.
T210 35647-35747 Sentence denotes This showed that most of the bPIV3 genes made individual contributions to the attenuation phenotype.
T211 35748-35838 Sentence denotes This suggests that a vaccine based on the attenuated bPIV3 backbone should be very stable.
T212 35839-36041 Sentence denotes It also indicated that the introduction of individual bPIV3 genes into hPIV3 is an additional strategy for attenuation, one that is now being pursued with a version of hPIV3 containing the bPIV3 N gene.
T213 36042-36258 Sentence denotes Reverse genetics also is being applied to hPIV1 and hPIV2, for which no live vaccine candidates are presently available and for which there are no attenuated animal virus counterparts as potential Jennerian vaccines.
T214 36259-36503 Sentence denotes Here, the strategy of "importing" mutations, in particular from RSV and hPIV3, has been particularly useful and has resulted in the development of a number of attenuating mutations that will serve as the basis for live hPIV1 and hPIV2 vaccines.
T215 36504-36634 Sentence denotes Finally, reverse genetics have been used to create attenuated, chimeric virus vectors to protect against multiple paramyxoviruses.
T216 36635-36751 Sentence denotes One multivalent candidate used the above-mentioned bPIV3/hPIV3 chimeric virus as a vector for the RSV F and G genes.
T217 36752-36799 Sentence denotes This virus thus combines two vaccines into one.
T218 36800-36990 Sentence denotes Importantly, the PIV3 backbone replicates in cell culture more efficiently and expresses higher levels of protein than RSV, and avoids the physical instability that is characteristic of RSV.
T219 36991-37179 Sentence denotes This chimeric vaccine exhibited satisfactory levels of attenuation and immunogenicity against hPIV3 and RSV when evaluated in Rhesus monkeys, and will be developed for clinical evaluation.
T220 37180-37391 Sentence denotes The availability of PIV vectors expressing RSV antigens offers a novel approach for the immunization or, alternatively, provides an efficient method of "boosting" an initial vaccination made by a live RSV virus.
T221 37392-37717 Sentence denotes It is anticipated that these methods will result in the development of live vaccines against RSV and hPIV3, which preferably would be given in the first weeks of life, and against hPIV1 and hPIV2, which cause disease somewhat later during the first year of life such that vaccination could begin at 6 months of age. (Kevin L.
T222 37718-37907 Sentence denotes Russell, Navel Health Research Center, San Diego, CA) Infections caused by influenza and adenovirus are not only common among military personnel but also make them less prepared for battle.
T223 37908-38123 Sentence denotes The current threat of bio-warfare, in addition to availability of anti-influenza drugs for prevention and treatment, makes the rapid identification of these pathogens essential to medical personnel and the military.
T224 38124-38216 Sentence denotes In the battlefield situation, ambient storage and transport of specimens would be desirable.
T225 38217-38593 Sentence denotes The Department of Defense Center for Deployment Health Research, the Naval Health Research Center, the Armed Forces Institute of Pathology, and the Fort Jackson Army Recruit Training Center have collaborated to assess the performance of PCR assays for influenza and adenovirus of samples stored at ambient temperature in comparison to viral culture using frozen fresh samples.
T226 38594-38789 Sentence denotes Any army recruit at Fort Jackson, SC who presented with an oral temperature ≥100.5 • F and a cough or sore throat during the study period (December 2001 -March 2002 had two nasal swabs collected.
T227 38790-38948 Sentence denotes One was inoculated into viral transport media and then frozen (−70 • C) for later viral culture, while the other was stored in ethanol at ambient temperature.
T228 38949-39117 Sentence denotes In samples collected from 195 symptomatic recruits, viral culture was positive in 46% of patients (14% influenza (27/28 H3N2, 1 B), 32% adenovirus (10 typed, all Av4)).
T229 39118-39174 Sentence denotes No dual infection were observed with culture techniques.
T230 39175-39253 Sentence denotes PCR detected influenza A in 25% of patients and adenovirus in 47% of patients.
T231 39254-39329 Sentence denotes There were 12 patients (6%) PCR positive for both adenovirus and influenza.
T232 39330-39454 Sentence denotes The results confirm the greater sensitivity of nucleic acid detection methods compared to culture under these circumstances.
T233 39455-39640 Sentence denotes The sensitivity and specificity of the culture, considering the PCR to be the gold standard, were 64 and 96%, respectively, for adenovirus and 49 and 98%, respectively, for influenza A.
T234 39641-39828 Sentence denotes There was no direct comparison to PCR positivity of samples frozen immediately versus specimens stored at ambient temperature, although these studies are planned for the 2002-2003 season.
T235 39829-40082 Sentence denotes Since room temperature storage techniques are easier to accomplish in most locations and since PCR techniques are widely available to the military, the techniques used in this study should expand the ability to provide respiratory pathogen surveillance.
T236 40083-40327 Sentence denotes Several subsequent studies are currently under way to standardize the methodology and equipment for the military and to provide information on yield of molecular techniques over time after collection of specimens (6-12 months after collection).
T237 40328-40412 Sentence denotes Unfortunately, the world does not appear to be prepared for a pandemic of influenza.
T238 40413-40551 Sentence denotes Thirty-one countries have plans but only four have formalized plans (Slovak Republic and Norway in 2001, New Zealand and Canada in 2002) .
T239 40552-40751 Sentence denotes All of the plans have been based on the WHO phases as outlined on the Global Agenda on Influenza (http://www.who.int/influenza) which outlines four major areas with 17 associated priority activities.
T240 40752-40875 Sentence denotes Guidelines for vaccines have been developed, but there is widespread concern that vaccine production will lag behind needs.
T241 40876-41002 Sentence denotes The WHO hopes to increase the awareness of the importance of pandemic planning and the development of national pandemic plans.
T242 41003-41160 Sentence denotes Likewise, the WHO is hoping to increase utilization of vaccines and antivirals and to develop strate-gies to acquire and utilize new vaccines and antivirals.
T243 41161-41235 Sentence denotes Lastly, the WHO is advocating for additional research on pandemic viruses.
T244 41236-41382 Sentence denotes These efforts are being heard, as a recent G7+ Round meeting to discuss bioterrorism set aside time for discussion of influenza pandemic planning.
T245 41383-41517 Sentence denotes Although progress is being made, a pandemic may occur at any time and greater steps need to be taken to minimize its potential impact.
T246 41518-41943 Sentence denotes The United States Department of Health and Human Services has established the Interagency Pandemic Influenza Working Group, with input from the Centers for Disease Control, the Food and Drug Administration, the National Institutes of Health, the Department of Defense, the Office of the General Council, the Office of Planning and Evaluation, the Office of Emergency Preparedness, and the National Vaccine Advisory Committee.
T247 41944-42113 Sentence denotes The goals of this Working Group were to develop a plan to limit the burden of disease, minimize social disruption, and reduce economic loss during an influenza pandemic.
T248 42114-42219 Sentence denotes These goals are to be met through three objectives: improving surveillance, response, and infrastructure.
T249 42220-42436 Sentence denotes Several actions have been proposed to strengthen national and global capabilities for virologic and disease surveillance with a view to increasing the likelihood of early detection of viruses with pandemic potential.
T250 42437-42629 Sentence denotes First, the WHO Global Influenza Surveillance network, with 112 sites in 80 countries and 4 collaborating centers in Atlanta, London, Melbourne, and Tokyo will have to be expanded and improved.
T251 42630-42769 Sentence denotes Increased collaboration between the WHO and CDC in the form of laboratory and epidemiology training has taken place during the past decade.
T252 42770-42882 Sentence denotes Animal influenza surveillance is also being enhanced through collaborations between NIH, WHO and other partners.
T253 42883-43047 Sentence denotes CDC has worked with states to expand the Sentinel Physicians Network such that it currently includes over 1400 physicians in 47 states and the District of Columbia.
T254 43048-43220 Sentence denotes Work is ongoing to establish a system to monitor hospitalized cases of influenza and to further facilitate the transfer of technology via training and reagent distribution.
T255 43221-43318 Sentence denotes The US Department of Defense surveillance sites also contribute to global influenza surveillance.
T256 43319-43441 Sentence denotes The Interagency Pandemic Influenza Working Group is also focused on improving national readiness to respond to a pandemic.
T257 43442-43683 Sentence denotes The CDC has developed a planning guide for state and local health officials (http://www.cdc.gov/od/nvpo/ pandemicflu.htm) that has helped in the development of pandemic planning guides for 47 states, 4 of which are available on the internet.
T258 43684-43969 Sentence denotes The focus of these plans is to create decision-making protocols for response to a pandemic, to develop flexible contingency plans for procurement and distribution of vaccines and antivirals, to reduce liability risks, and to prioritize groups for receipt of vaccines and/or antivirals.
T259 43970-44136 Sentence denotes Improved readiness has also focused on identification of specific resources required for a response, including additional medical personnel, medications and vaccines.
T260 44137-44286 Sentence denotes A web-based program, FluAid 2.0 (http://www2.cdc.gov/od/fluaid) has been developed which will help states estimate the potential impact of influenza.
T261 44287-44439 Sentence denotes The third, and perhaps largest objective of the Working Group, is to strengthen influenza-related public health practices, infrastructure, and research.
T262 44440-44625 Sentence denotes A successful component of this objective is the promotion of adult immunization programs with improved vaccine coverage of individuals at increased risk of complications from influenza.
T263 44626-44771 Sentence denotes Several groups are developing communications networks and protocols to disseminate up-to-date information to healthcare providers and the public.
T264 44772-45028 Sentence denotes Research on influenza biology and epidemiology, animal surveillance, and vaccine and antiviral development has been and will continue to be supported by NIH through grants to academic researchers and through grants that support public-private partnerships.
T265 45029-45215 Sentence denotes Development of cell culture-based vaccines and the testing in humans of candidate pandemic vaccines made using reverse genetics or classical reassortment techniques should be encouraged.
T266 45216-45301 Sentence denotes There is also a need to test adjuvanted vaccines and to develop new antiviral agents.
T267 45302-45461 Sentence denotes It is noteworthy that there are currently only two influenza vaccine manufacturers licensed to distribute vaccine in the US for the 2003-2004 influenza season.
T268 45462-45646 Sentence denotes It is also noteworthy that 80-90% of produced vaccine is purchased privately, and it takes nearly a full year from the time of selection of strains to the production of usable vaccine.
T269 45647-45956 Sentence denotes As a result, it will be essential to encourage new vaccine manufacturers and new approaches, including reverse genetics to prepare seed strains, in addition to developing and implementing a vaccine policy that ensures adequate and fair procurement and distribution of the vaccine during an influenza pandemic.
T270 45957-46051 Sentence denotes Such policies will need to take into account liability protection and equitable global access.
T271 46052-46213 Sentence denotes Finally, identifying appropriate antiviral drugs to stockpile and developing plans to prioritize use of these antivirals are necessary for pandemic preparedness.
T272 46214-46361 Sentence denotes Despite all of the progress made by the Working Group, many obstacles remain that prevent effective implementation of a pandemic preparedness plan.
T273 46362-46571 Sentence denotes It is essential that policy makers and the public understand the potential threat that influenza poses to mankind so that firm political and financial commitments are made to minimize the impact of a pandemic.
T274 46572-46894 Sentence denotes The best defense against an influenza pandemic is to strengthen the capacity to respond to seasonal epidemics of influenza through improved surveillance, increased vaccine use, enhanced vaccine production, and development of a more effective vaccine delivery infrastructure that could function effectively in an emergency.
T275 46895-47052 Sentence denotes Policy makers should take advantage of and integrate bioterrorism planning with pandemic influenza preparedness and develop flexible, science-based policies.
T276 47053-47149 Sentence denotes By combining all of these efforts we will be better prepared for the next pandemic of influenza.
T277 47150-47269 Sentence denotes Despite the significant progress made in some countries, pandemic influenza planning in Europe is still in its infancy.
T278 47270-47440 Sentence denotes A major obstacle to pandemic planning in Europe is the lack of a centralized planning organization and dependence on national governments to address public health issues.
T279 47441-47590 Sentence denotes The first pandemic planning meeting of European Union members included policy makers, scientists, and industry in Brussels, Belgium in November 2001.
T280 47591-47769 Sentence denotes Since then, an EU draft pandemic plan, with guidance from the WHO's draft guidelines and those prepared by the CDC, has been produced and is currently circulating for discussion.
T281 47770-47964 Sentence denotes In addition, the IVS Taskforce was developed and has two important subcommittees: the Policy, Practice, and Communications committee and the Science, Production, and Regulations (SPR) committee.
T282 47965-48192 Sentence denotes The SPR committee has developed goals of creating high-yield seeds through production of influenza virus libraries, with the help of MedImmune, CDC, and European FluPlan partners, and enhancement of reverse genetics technology.
T283 48193-48477 Sentence denotes The SPR is also working to enhance reagent availability, speed regulatory clearance of future vaccines and antivirals, and to collect clinical data on the safety, necessary antigen concentrations, most appropriate adjuvants and dose schedule, and immunogenicity of candidate vaccines.
T284 48478-48580 Sentence denotes In addition, it hopes to move studies forward to allow proof of concept of novel vaccine technologies.
T285 48581-48734 Sentence denotes One study in this direction has looked at the amount of antigen needed and the relative production capacity of vaccine using several different scenarios.
T286 48735-48882 Sentence denotes Currently, most trivalent vaccines require 15 g of antigen for each virus and have a production capacity within Europe of 1 million doses per week.
T287 48883-49066 Sentence denotes If a monovalent vaccine was used in combination with a potent adjuvant, the required antigen could be potentially reduced to 3.25 g and increase capacity to 12 million doses per week.
T288 49067-49300 Sentence denotes Two recent meetings have helped to identify candidate vaccines for H5N3, H9N2, and H2N2 viruses, to collect data on enhanced vaccine efficacy with the use of adjuvants, and to develop protocols to fast track registration of vaccines.
T289 49301-49470 Sentence denotes A significant issue for Europe is that only a few of the countries have vaccine production capacities, leaving most nations dependent on others to supply their vaccines.
T290 49471-49574 Sentence denotes It is estimated that there will be a 189 million dose shortfall of vaccine in the EU during a pandemic.
T291 49575-49695 Sentence denotes Likewise, there has yet to be a concerted effort to stockpile antiviral agents and supplies of these agents are limited.
T1 49696-49779 Sentence denotes Three groups are actively working on pandemic influenza issues in Europe currently.
T2 49780-49877 Sentence denotes The European Scientific Working Group on Influenza has meetings to address pandemic preparedness.
T3 49878-50095 Sentence denotes The European Influenza Surveillance Scheme has been designed to collect and exchange information on influenza activity throughout Europe and currently encompasses 10,500 physicians and 26 laboratories in 20 countries.
T4 50096-50285 Sentence denotes Pandemic plans have been developed in 19 of the 20 European Influenza Surveillance Scheme participating countries, although implementation of the plans has been, for the most part, limited.
T5 50286-50389 Sentence denotes Finally, the European Union has funded the Fifth Framework Program including FluPlan and No-vaFlu 2001.
T6 50390-50495 Sentence denotes These programs hope to address development of novel vaccines and vaccination strategies and formulations.
T7 50496-50612 Sentence denotes Australia has developed a 'Framework' for an influenza pandemic plan and has begun to implement its recommendations.
T8 50613-50888 Sentence denotes The Influenza Pandemic Planning Committee (IPPC) was chartered to develop a contingency plan and make recommendations for infrastructure and strategies required to minimize the mortality, morbidity, social disruption and economic losses associated with an influenza pandemic.
T9 50889-51173 Sentence denotes The work of the Committee and its recommendations were published as a comprehensive document which incorporated as an appendix the contingency plan for health care institutes prepared for the Victorian state plan: http://www.health.gov.au/pubhlth/strateg/communic/ tech/influenza.htm.
T10 51174-51307 Sentence denotes A condensed, action-oriented version of the plan was subsequently adopted by the Communicable Diseases Network as a basis for action.
T11 51308-51577 Sentence denotes The major recommendations were the maintenance of an ongoing pandemic planning committee, further impact modeling, adoption of WHO 'alerts', improvement of interpandemic use of vaccine, development of an antiviral stockpile, and development of communication strategies.
T12 51578-51686 Sentence denotes A National Pandemic Action Committee (NIPAC) has recently been formed with the following terms of reference:
T13 51687-51719 Sentence denotes During the interpandemic period:
T14 51720-52162 Sentence denotes • Assisting the Government with development of national policies on vaccination strategies, surveillance and antiviral stockpiling; • Establishing working parties to progress policy issues from the Action Plan; • Collaborating with the States and Territories to prepare their plans; • Revising and promoting the Action Plan in consideration of the changing global agenda; • Regularly reporting progress to the Department of Health and Ageing.
T15 52163-52203 Sentence denotes Following WHO declaration of a pandemic:
T16 52204-52264 Sentence denotes • Initiating the national response and monitor the pandemic;
T17 52265-52295 Sentence denotes • Facilitating communications;
T18 52296-52429 Sentence denotes • Alerting government regarding urgent issues and advising actions to reduce public health risks; • Evaluating the pandemic response.
T19 52430-52498 Sentence denotes Similarly the Australian states are moving to pandemic action plans.
T20 52499-52846 Sentence denotes However, whilst these steps have been taken and pandemic planning has been elevated within the bureaucracy, there has yet to be significant commitment of funds, there has been little regional involvement and, apart from representation through the WHO Collaborating Centre, Australia has not yet contributed greatly to global pandemic preparedness.
T21 52847-52928 Sentence denotes The health and economic benefits of influenza vaccination are firmly established.
T22 52929-53011 Sentence denotes Influenza vaccine use is increasing worldwide, especially in developing countries.
T23 53012-53090 Sentence denotes In the year 2000, approximately 234 million doses of vaccine were distributed.
T24 53091-53209 Sentence denotes Of these, 34% of the doses were used in countries outside North America, Western Europe and Australia and New Zealand.
T25 53210-53350 Sentence denotes Most (85%) of the world's influenza vaccine is produced in eight developed countries located in Western Europe, North America and Australia.
T26 53351-53629 Sentence denotes Susceptibility to pandemic influenza will depend on whether the virus is a re-emergent virus similar to one that has infected people in the past, for example influenza A (H2N2), or an entirely new virus like the avian influenza A (H5N1) virus that appeared in Hong Kong in 1997.
T27 53630-53868 Sentence denotes If it is an influenza A (H2N2)-like virus, people over the age of 35 years (approximately 40% of the world's population) are likely to have been immunologically primed by past infection and will require only one 'booster' dose of vaccine.
T28 53869-53973 Sentence denotes If the virus is entirely new, no one will have been primed and everyone will probably require two doses.
T29 53974-54236 Sentence denotes Moreover, because the clinical effectiveness and cost-effectiveness of vaccinating not only older adults but also younger adults and children is widely appreciated, health officials in many countries may choose to vaccinate most, if not all of their populations.
T30 54237-54369 Sentence denotes Thus the number of doses of vaccine that will be needed for a pandemic will be much larger than the number currently used each year.
T31 54370-54544 Sentence denotes In inter-pandemic years, companies sell influenza vaccine through contracts with public health authorities or directly to distributors, institutions, employers or physicians.
T32 54545-54669 Sentence denotes Prices are low, and the vaccine is generally considered to be a commodity product by companies and health authorities alike.
T33 54670-54773 Sentence denotes For this reason, companies make conservative estimates of how much vaccine they will produce each year.
T34 54774-54956 Sentence denotes When demand for vaccine increases suddenly, as it will when a pandemic threat appears, vaccine companies will probably lack the production capacity to respond adequately and quickly.
T35 54957-55138 Sentence denotes Because a pandemic vaccine will probably be monovalent rather than trivalent, it is theoretically possible that the number of doses that might be produced could increase three-fold.
T36 55139-55225 Sentence denotes Nonetheless, pandemic vaccine is still likely to be in short supply in most countries.
T37 55226-55385 Sentence denotes Prudent national health officials may choose to lock in a future supply of pandemic vaccine by negotiating a long-term forward contract with a vaccine company.
T38 55386-55541 Sentence denotes Canadian health officials have negotiated such a contract with Canada's sole domestic producer, but no such contracts have been written in other countries.
T39 55542-55719 Sentence denotes When a pandemic threat appears, within a period of a few months scores of countries will try to negotiate contracts for pandemic vaccine supply with a small number of companies.
T40 55720-55787 Sentence denotes The negotiations will be chaotic and, for the most part, fruitless.
T41 55788-55930 Sentence denotes Moreover, they are likely to be compromised by the 'nationalization' of vaccine production in countries that have influenza vaccine companies.
T42 55931-56034 Sentence denotes This is what political leaders in the United States did for Swine influenza vaccine production in 1976.
T43 56035-56179 Sentence denotes Canadian health officials remember this well, which is one reason why they signed their contract with their domestic influenza vaccine producer.
T44 56180-56263 Sentence denotes Political leaders in countries without vaccine companies will not have this option.
T45 56264-56409 Sentence denotes A new approach must be devised that guarantees there will be an adequate supply of pandemic vaccine to meet the level of demand in all countries.
T46 56410-56472 Sentence denotes This new approach must address the following six major issues.
T47 56473-56578 Sentence denotes (1) When a pandemic threat appears, there will be delay in preparing seed strains for vaccine production.
T48 56579-56658 Sentence denotes This might be overcome by using reverse genetics to prepare these seed strains.
T49 56659-56761 Sentence denotes In principle, reverse genetics could be used to prepare high-growth variants for efficient production.
T50 56762-56973 Sentence denotes This may be essential if the pandemic virus is of avian origin because many of these viruses grow poorly (or not at all) in embryonated eggs, the culture system used for all current influenza vaccine production.
T51 56974-57438 Sentence denotes As long as issues regarding the worker safety and the intellectual property rights attached to reverse genetics can be sorted out beforehand, this promising technique could be the key factor for ensuring adequate production of pandemic vaccine. (2) Whether the pandemic threat is due to a re-emergent (A/H2-like) or novel (e.g. A/H5-like) virus will determine not only the kind of vaccine that should be produced but also whether one or two doses will be required.
T52 57439-57549 Sentence denotes Every effort must be made to determine the minimal antigenic content of a dose that is acceptably immunogenic.
T53 57550-57710 Sentence denotes Studies conducted many years ago indicated that whole cell vaccines were more immunogenic than split virus or subunit preparations of similar antigenic content.
T54 57711-57839 Sentence denotes Moreover, recent studies have shown that an adjuvanted vaccine will probably be needed for at least the first if not both doses.
T55 57840-57950 Sentence denotes These studies need to be extended in a larger series of clinical trials of candidate 'pandemic-like' vaccines.
T56 57951-58173 Sentence denotes The trials must be publicly funded and designed to determine the optimal characteristics of a pandemic vaccine and vaccination schedule. (3) Current regulatory requirements will delay the registration of pandemic vaccines.
T57 58174-58302 Sentence denotes In Western Europe, immunogenicity studies must be undertaken by vaccine companies each year in order to register their products.
T58 58303-58402 Sentence denotes Such trials are costly and time consuming, and they are not required in North America or Australia.
T59 58403-58500 Sentence denotes Moreover, there is widespread international trade in influenza vac-cines in inter-pandemic years.
T60 58501-58571 Sentence denotes For the next pandemic, such trade is likely to be much more extensive.
T61 58572-58815 Sentence denotes If pandemic vaccines are to be delivered quickly to the countries where they are needed most, a global protocol will be required that will allow the pandemic vaccine produced by any company to be registered for use in any country of the world.
T62 58816-59087 Sentence denotes The need for a protocol for the global registration of pandemic vaccines should be considered before the next pandemic threat appears. (4) Countries will be better prepared for the next pandemic if they can increase their use of influenza vaccine in inter-pandemic years.
T63 59088-59243 Sentence denotes This was started by the Canadian province of Ontario in 2000, when it extended its recommendation for influenza vaccine to all people over 6 months in age.
T64 59244-59325 Sentence denotes One reason for instituting this program was to be better prepared for a pandemic.
T65 59326-59670 Sentence denotes Health officials can help prepare for the next pandemic by expanding their influenza vaccination recommendations and extending their programs for public reimbursement for vaccination in inter-pandemic years. (5) The traditional market approach for providing interpandemic vaccine will not be able to meet the global demand for pandemic vaccine.
T66 59671-59844 Sentence denotes Although many vaccine companies are expanding their production facilities, it is still difficult for them to estimate future demand for inter-pandemic and pandemic vaccines.
T67 59845-59981 Sentence denotes This is unlike the situation for pediatric vaccines for which precise estimates of the size of future target populations are well known.
T68 59982-60420 Sentence denotes One way to overcome uncertainty about future demand for influenza vaccines would be to: (a) obtain country-specific data on the number of doses of influenza vaccine distributed each year by each vaccine company and rapidly report the total number of doses distributed per 1000 population in all countries; and (b) obtain 5-year rolling forecasts of the demand for inter-pandemic and pandemic vaccine from health officials in each country.
T69 60421-60845 Sentence denotes The availability of such past and future information would challenge health officials to make more comprehensive plans for vaccination programs and help companies make more realistic plans for vaccine production. (6) Political leaders in most vaccine-producing countries will probably prohibit the export of domestically produced pandemic vaccine to other countries until they are certain their national needs have been met.
T70 60846-61064 Sentence denotes As a result, countries that do not have vaccine companies, including many that currently use large amounts of vaccine in inter-pandemic years, may find it difficult or impossible to obtain supplies of pandemic vaccine.
T71 61065-61296 Sentence denotes To prevent this from happening, international political agreements must be negotiated beforehand that ensure adequate production and equitable distribution of pandemic vaccines to both vaccine-producing and non-producing countries.
T72 61297-61353 Sentence denotes The European Commission has begun doing this for Europe.
T73 61354-61410 Sentence denotes Something similar needs to be done for the entire world.
T74 61411-61560 Sentence denotes Effective planning for pandemic influenza and the global vaccine supply will require the skills of experts in virology, epidemiology and vaccination.
T75 61561-61650 Sentence denotes Equally important, however, will be the skills of experts in politics, economics and law.
T76 61651-61727 Sentence denotes Coordinating their efforts at an international level will be very difficult.
T77 61728-61782 Sentence denotes That the task must be undertaken cannot be questioned.
T78 61783-61895 Sentence denotes Because the health benefits of its success are certain, the challenge it presents is extraordinarily compelling.
T79 61896-61900 Sentence denotes 5.6.
T80 61901-62509 Sentence denotes How good are the rapid diagnostic tests really? (Peter Wright, Vanderbilt University Medical Center, Nashville, TN and Ruth Karron, Johns Hopkins University, Baltimore, MD) Rapid diagnostic tests for respiratory viral illness has become an increasingly important tool because of the advent of effective antiviral agents that are maximally effective if started early in the course of the illness, the need to isolate patients who could pass their infection to other ill patients, and the need to differentiate between these viral illnesses and other respiratory tract pathogens, including bioterrorism agents.
T81 62510-62574 Sentence denotes However, currently available rapid testing has many limitations.
T82 62575-62952 Sentence denotes Areas of improvement that need to be addressed include the ability to test for all or most know agents, improved collection methods, improved integration of diagnosis with use of medications and clinical care, use of diagnostics for epidemiology and vaccine development, increased sensitivity in adults and immunocompromised patients, and improved ease and accuracy of testing.
T83 62953-63028 Sentence denotes Rapid testing is currently available for RSV and influenza on a wide basis.
T84 63029-63263 Sentence denotes There are significant limitations of these tests including sensitivities and specificities that are dependent on the quality of the sample collected, the timing of the illness, the intensity of the epidemic, and the population tested.
T85 63264-63437 Sentence denotes These assays have been developed to allow for sentinel surveillance, although their positive predictive values are limited at the beginning and end of epidemics (see below).
T86 63438-63614 Sentence denotes In addition, rapid testing helps to identify patients who may benefit from antiviral agents and to decrease the use of antibiotics and shorten the duration of hospitalizations.
T87 63615-63742 Sentence denotes The available rapid tests for RSV and their respective characteristics have been reviewed elsewhere recently (Caliendo, 2002) .
T88 63743-63926 Sentence denotes Rapid testing for influenza uses three major methods: fluorescent antibodies (FA) and other antigen detection techniques, neuraminidase detection, and polymerase chain reaction (PCR).
T89 63927-63994 Sentence denotes FA testing is rapid with a turn-around-time (TAT) of 20 min to 2 h.
T90 63995-64106 Sentence denotes Unfortunately, it requires intact cells in the collected fluid, an expert reader, and a fluorescent microscope.
T91 64107-64263 Sentence denotes It is able to distinguish between influenza A and B and has a sensitivity of 92-99% and a specificity of 96% (Hornsleth and Jankowski, 1990; Storch, 2003) .
T92 64264-64335 Sentence denotes It costs about US$ 2.50-7 to screen and US$ 8-18 to identify influenza.
T93 64336-64454 Sentence denotes PCR takes slightly longer with a TAT of 6-12 h and requires an expert technician and specialized, expensive equipment.
T94 64455-64527 Sentence denotes Unfortunately, PCR is not available at most centers as a clinical assay.
T95 64528-64851 Sentence denotes Very rapid tests include Becton-Dickinson Influenza A and Influenza A/B, enzyme immunoassays (EIA), Zstat Flu, an endogenous viral encoded assay (EVEA), FluOIA, an optical immunoassay (OIA), Quickvue Influenza, a lateral flow immunoassay (LFIA), and Binax Now Flu A and Flu B, an immunochromatographic membrane (ICT) assay.
T96 64852-64976 Sentence denotes The ZStat Flu, QuickVue Influenza, and Binax Now FluA and FluB are currently CLIA-waived which allows for in-clinic testing.
T97 64977-65070 Sentence denotes The features of the different assays have been summarized recently (Nicholson et al., 2003) .
T98 65071-65414 Sentence denotes Unfortunately, reported sensitivities and specificities of these various tests cannot be directly compared, since different 'gold standards', source populations, sample types (fresh versus frozen; nasal versus throat), and operators (i.e. research laboratory versus clinical laboratory versus physician office) were used to evaluate each test.
T99 65415-65723 Sentence denotes Use of a particular rapid diagnostic test for influenza should be determined according to the level of identification needed (influenza A or B versus influenza A and B), price, CLIA status, specimen type, staff familiarity with methods, turn-around-time, and relative sensitivity and specificity of the test.
T100 65724-65796 Sentence denotes Additionally, the predictive value depends on the prevalence of disease.
T101 65797-66016 Sentence denotes For example, if the sensitivity and specificity of the test was 80%, and the prevalence of influenza was 5%, the positive predictive value (PPV) of the test would be 17%; if the prevalence was 20%, the PPV would be 50%.
T102 66017-66135 Sentence denotes Rapid testing is best used in individuals with a strong pre-test probability of influenza during the influenza season.
T103 66136-66262 Sentence denotes When clinically important (for example, in hospitalized patients), negative rapid test results should be confirmed by culture.
T104 66263-66595 Sentence denotes The response to respiratory viral infections is mediated through interactions within the mucosal surface which contains epithelial cells, alveolar cells, dendritic cells, and macrophages, the innate immune system, including natural killer cells, neutrophils, and macrophages, and the adaptive immune system, including B and T cells.
T105 66596-66847 Sentence denotes These interactions occur as the result of mediators including preformed ones like the collectins, including surfactant protein A (SP-A) and D (SP-D), and inducible mediators, such as collectins, cytokines, chemokines, granule products, and antibodies.
T106 66848-66936 Sentence denotes Several signaling pathways are used to modulate the immune response following infection.
T107 66937-67169 Sentence denotes Viral infection of epithelium, interaction with pattern recognition receptors, such as toll-like receptors, and creation of Virus-collectin complexes results in upregulation of mediator genes, predominately cytokines and chemokines.
T108 67170-67222 Sentence denotes Virus-collectin complexes also enhance phagocytosis.
T109 67223-67435 Sentence denotes Viral proteins binding to B cell receptors results in increase antibody and mediator production, while viral protein binding to T cell receptors results in activation of T cells and increased mediator production.
T110 67436-67650 Sentence denotes The chemokines and cytokines that are elaborated in response to the infection then interact with receptors that result in chemotaxis and regulation of gene expression that ultimately results in the immune response.
T111 67651-67837 Sentence denotes To evaluate the role of specific mediators, receptors, or signaling pathways in response to respiratory virus infections, animal experiments, particularly with mice, are frequently used.
T112 67838-68179 Sentence denotes Three types of mice can be used for such experiments: transgenic mice, where the gene encoding the molecule of interest is over-expressed or expressed in an abnormal location (tissue), knock-out mice, which have specific genes or gene segments deleted, and knock-in mice, which have mutated forms of the gene replacing the wild-type version.
T113 68180-68271 Sentence denotes For example, collectin-deficient mice have been used in influenza and RSV infection models.
T114 68272-68434 Sentence denotes SP-D deficient mice have increased sensitivity to RSV and influenza A infection, increased inflammation, increased lung virus titers with delayed virus clearance.
T115 68435-68480 Sentence denotes SP-A deficient mice have a similar phenotype.
T116 68481-68568 Sentence denotes These studies suggest that collectins regulate the innate and adaptive immune response.
T117 68569-68745 Sentence denotes Since the RSV-F protein binds to toll-like receptor 4 (TLR-4), TLR-4 deficient mice have been used in immunopathogenesis studies on the role of toll receptors in RSV infection.
T118 68746-68879 Sentence denotes TLR-4 deficient mice had impaired clearance of RSV from lungs, but TLR-4 deficiency does not have an effect on influenza A clearance.
T119 68880-69020 Sentence denotes TLR-4 deficient mice also had diminished pulmonary IL-12 synthesis after RSV infection and defective recruitment and activation of NK cells.
T120 69021-69108 Sentence denotes TLR-4 is therefore considered a major mediator of RSV clearance (Haynes et al., 2001) .
T121 69109-69173 Sentence denotes Interferons play a key role in control of many viral infections.
T122 69174-69314 Sentence denotes Typically interferon receptor genes are knocked out instead of the interferon genes because numerous genes code for each type of interferon.
T123 69315-69482 Sentence denotes Survival, lung virus titers, and clearance of influenza in IFN-␣/␤/␥ receptor knock-out mice are not different from that observed in normal mice (Price et al., 2000) .
T124 69483-69655 Sentence denotes Interferon may limit influenza virus dissemination for those strains that can replicate outside of the respiratory tract, a process that is more difficult to model in mice.
T125 69656-69787 Sentence denotes Several knock-out mice have been used to better understand the impact of the adaptive immune response on influenza virus infection.
T126 69788-70016 Sentence denotes B-cell function has been tested using MT, J H , and C K knockouts, while CD8 and MHC class II knockouts have been used to understand the role of CD4 and CD8␣ and ␤2M knockouts have been used to understand the role of CD8 T cell.
T127 70017-70259 Sentence denotes From studies with these knockouts, deficit in any component of the adaptive immune system results in enhanced susceptibility to infection, delayed virus clearance, and increased pulmonary inflammation and injury following influenza infection.
T128 70260-70397 Sentence denotes Recovery from infection can be mediated by the remaining adaptive immune response in conjunction with the ongoing innate immune response.
T129 70398-70531 Sentence denotes Ex-periments with these mice suggest that resistance to repeat infection and hetero-subtypic immunity is mediated in part by B cells.
T130 70532-70633 Sentence denotes The role of secretory antibodies has been studied using IgA, J chain, and poly-Ig receptor knockouts.
T131 70634-70875 Sentence denotes These studies have demonstrated that secretory IgA is not required for recovery from pulmonary infection but that secretory IgA may enhance clearance of homotypic and heterosubtypic virus from the upper respiratory tract following infection.
T132 70876-70991 Sentence denotes Finally, the role of CD8 T cell lytic machinery has been studied using perforin, Fas, and Fas ligand knockout mice.
T133 70992-71139 Sentence denotes Perforin deficiency has no impact on influenza clearance but does result in delayed clearance of virus and increased inflammation in RSV infection.
T134 71140-71305 Sentence denotes Fas ligand deficiency has no impact on influenza clearance, but combined defects of perforin and Fas ligand results in delayed clearance of influenza by CD8 T cells.
T135 71306-71557 Sentence denotes Taken together, our understanding of the contributions of individual components of the immune system to the clearance of virus and survival of the host following influenza and RSV infection has been advanced by the use of genetically modified animals.
T136 71558-71698 Sentence denotes Both the innate and adaptive host immune responses contribute to virus clearance and recovery from experimental influenza and RSV infection.
T137 71699-71764 Sentence denotes Innate and adaptive host responses are cooperative and redundant.
T138 71765-71854 Sentence denotes Immunologic memory in the respiratory tract may not be accurately reflected systemically.
T139 71855-72041 Sentence denotes With greater understanding of the innate and adaptive immune response, it may be possible to develop vaccines with improved efficacy or with the ability to modulate the pulmonary injury.
T140 72042-72162 Sentence denotes RSV is highly infectious and nearly all children have serological evidence of infection by the end of their second year.
T141 72163-72269 Sentence denotes It is not known why some infected infants develop severe disease, whereas the majority have mild symptoms.
T142 72270-72439 Sentence denotes In response to infection, the host produces a complex mixture of cytokines and other inflammatory mediators with anti-viral but also potentially pathological properties.
T143 72440-72701 Sentence denotes Various clinical and experimental observations indicate that certain patterns of host response are associated with severe disease, but it has been extremely difficult to prove that these are causal determinants, rather than just correlates, of clinical outcome.
T144 72702-72854 Sentence denotes To better understand the association between clinical response to infection (phenotype) and specific genes, genetic association studies need to be done.
T145 72855-72944 Sentence denotes Genetic association studies can be done using a genome approach or using candidate genes.
T146 72945-73121 Sentence denotes It has been estimated that genomic approaches would require study of at least 200,000 markers in several thousand subjects, a project which would cost many millions of dollars.
T147 73122-73188 Sentence denotes For this reason candidate gene approaches are used by most groups.
T148 73189-73371 Sentence denotes Several candidate genes have been identified that may play a role in the immune response to RSV, including IL-5, 8, 10, and 13, CCR5, ICAM-1, IL-4 receptor, IFN-␥ and IFN-␥ receptor.
T149 73372-73565 Sentence denotes The primary objective of current genetic association studies is to identify host factors that contribute to the development of severe lower respiratory tract disease following infection by RSV.
T150 73566-73808 Sentence denotes These studies will address this problem through a molecular genetic approach, by investigating whether disease susceptibility is related to common polymorphisms in host genes that are thought to be critical for protection and/or pathogenesis.
T151 73809-73896 Sentence denotes The UK study is enrolling infants, less than a year old, with severe RSV bronchiolitis.
T152 73897-74020 Sentence denotes DNA samples from the patient, the patient's parents, and ethnically matched cord blood controls are collected and analyzed.
T153 74021-74101 Sentence denotes To date, 700 cases have been collected, including 550 complete family samplings.
T154 74102-74193 Sentence denotes The first gene to be analyzed was IL-8, a potent neutrophil chemo-attractant and activator.
T155 74194-74302 Sentence denotes We have previously demonstrated that IL-8 promoter polymorphisms may influence the level of gene expression.
T156 74303-74352 Sentence denotes IL8-251A is associated with severe bronchiolitis.
T157 74353-74456 Sentence denotes The odds ratio (OR) for bronchiolitis for a T to A change is 1.25 while AA to any other change is 1.47.
T158 74457-74577 Sentence denotes There is also a suggestion that the IL8-251 polymorphism predisposes to subsequent wheezing illness after bronchiolitis.
T159 74578-74759 Sentence denotes In a follow-up study of children who had been admitted to hospital with RSV bronchiolitis, IL8-251AA was found more frequently in children who experienced subsequent wheezing (29%).
T160 74760-74882 Sentence denotes The frequency in children without wheezing was not different from controls who had not had bronchiolitis (17% versus 20%).
T161 74883-75125 Sentence denotes Our current work is directed at fine mapping of the IL8 bronchiolitis susceptibility effect; preliminary studies suggest there is also a link with a RAS effector gene (RASSF6) (OR 2.1) that is located just downstream from the IL-8 gene locus.
T162 75126-75169 Sentence denotes We have also investigated variants of CCR5.
T163 75170-75318 Sentence denotes CCR5 is the major receptor for RANTES, MIP-1␣, and MIP-1␤ and has several polymorphisms that are associated with levels of CCR5 on the cell surface.
T164 75319-75394 Sentence denotes Certain polymorphisms of CCR5 have been associated with progression of HIV.
T165 75395-75567 Sentence denotes We have found that a CCR5 promoter SNP (single nucleotide polymorphism; CCR5-2459) is associated with more severe bronchiolitis (OR 1.5; OR 1.8 without other risk factors).
T166 75568-75761 Sentence denotes In combination, the studies on IL8 and CCR5 suggest that the innate immune response of the airway epithelial cells to infection with RSV appears to be important in determining disease severity.
T167 75762-75940 Sentence denotes Another area of interest in RSV pathogenesis relates to chromosome 5q31-33, which contains several markers that have been associated with atopy, IgE levels, and wheezing illness.
T168 75941-76013 Sentence denotes Several Th2 cytokine genes map to this region, including IL-4 and IL-13.
T169 76014-76159 Sentence denotes We have found that a common haplotype of IL-4, which 77% of humans carry, is associated with increased risk of severe RSV bronchiolitis (OR 1.5).
T170 76160-76398 Sentence denotes In a Korean study of 105 children under 24 months old with RSV lower respiratory tract infections and 315 blood donors, a different haplotype at IL-4 was also found to be associated with more severe disease (OR 1.63) (Choi et al., 2002) .
T171 76399-76566 Sentence denotes These results suggest that there may be a functional variant at this locus (identified by different haplotypes in different populations) that affects disease severity.
T172 76567-76749 Sentence denotes In addition, we have preliminary data that suggests that a rare haplotype of IL-13, found in only 5% of humans, also affects the risk of bronchiolitis after exposure to RSV (OR 2.0).
T173 76750-76916 Sentence denotes In conclusion, data from genetic association studies indicate that both innate and adaptive immune responses are important in determining the severity of RSV disease.
T174 76917-77112 Sentence denotes Genetic association studies should shed light on the pathogenesis of severe RSV disease, as well as providing information that may allow targeting of therapies to infants at especially high risk.
T175 77113-77286 Sentence denotes This approach could be extended to other common respiratory viral infections, such as those due to influenza and rhinovirus, to understand differences in disease expression.
T176 77287-77441 Sentence denotes Efficient RSV infection in HEp-2 and A549 cells involves binding to cell surface glycosaminoglycans (GAG) such as heparin sulfate and chondroitin sulfate.
T177 77442-77603 Sentence denotes These GAGs are long chains of repeating disaccharides, typically 70-200 residues in length, and are present on surface proteoglycans of the extracellular matrix.
T178 77604-77765 Sentence denotes HPIV3 attaches to sialic acid that decorates cell surface glycoproteins and glycolipids, although GAGs also have been reported to contribute to HPIV3 attachment.
T179 77766-77961 Sentence denotes In contrast to the usual practice of employing monolayer cultures of immortalized cell lines, the present study investigated RSV and PIV3 infection of primary human airway epithelial (HAE) cells.
T180 77962-78275 Sentence denotes These cells are grown on a support in culture and, upon the establishment of an air-liquid interface, differentiate into a multi-layered, pseudostratified, polarized tissue that closely resembles the airway epithelium in vivo with regard to morphology and functions, including mucus production and ciliary motion.
T181 78276-78333 Sentence denotes The cilia are limited to the apical surface of the cells.
T182 78334-78423 Sentence denotes Keratan sulfate is frequently present on ciliated cells and can detected immunologically.
T183 78424-78714 Sentence denotes Wild type recombinant RSV was genetically engineered to express the green fluorescent protein (rgRSV) from an added gene, so that infection could be monitored in real time in living cells. rgRSV could only infect the cells when applied to the apical surface and not the basolateral surface.
T184 78715-78805 Sentence denotes Furthermore, the virus appeared to infect only ciliated, keratan sulfate-expressing cells.
T185 78806-79012 Sentence denotes Mechanical damage to the tissue, which exposes underlying layers of cells, did not increase the range of infection, indicating that this reflected an authentic tropism rather than simple physical exclusion.
T186 79013-79093 Sentence denotes Next, the virus was applied to cell cultures at different stages of development.
T187 79094-79315 Sentence denotes Infection was very inefficient early in the development of the tissue (2 days after establishment of an air-liquid interface), but the efficiency increased with increasing differentiation, reaching a plateau after day 14.
T188 79316-79372 Sentence denotes This corresponded with the appearance of ciliated cells.
T189 79373-79527 Sentence denotes The virus was also shown to be shed from the apical surface at reasonably steady levels after infection (∼10 7 plaque forming units per ml of wash fluid).
T190 79528-79641 Sentence denotes Timed microscopy demonstrated well-defined spread of the RSV across the apical face consistent with cilia motion.
T191 79642-79701 Sentence denotes Ribavirin and palivizumab inhibited infection of the cells.
T192 79702-79910 Sentence denotes Thirty-six days after rgRSV infection, intact infected cells were readily detected but, interestingly, cytopathologic effect was minimal, although cells were noted to become rounder in the vertical dimension.
T193 79911-80022 Sentence denotes These studies show that RSV infects only the apical surface and only keratan sulfate-containing ciliated cells.
T194 80023-80144 Sentence denotes RSV infection has minimal cytopathic effect with an absence of syncytia, likely due to polarized expression of F protein.
T195 80145-80210 Sentence denotes A similar model was created using HPIV3 expressing GFP (PIV3GFP).
T196 80211-80290 Sentence denotes Like RSV, HPIV3 appears to infect, bud, and spread via the apical surface only.
T197 80291-80447 Sentence denotes HPIV3 also appeared to infect only ciliated cells, and appeared to infect keratin sulfate-containing cells, as well as a subset that lacked keratin sulfate.
T198 80448-80547 Sentence denotes Unlike RSV, HPIV3 was able to infect undifferentiated cells as efficiently as differentiated cells.
T199 80548-80636 Sentence denotes Infection appeared to be completely dependent on sialic acid on the apical cell surface.
T200 80637-80776 Sentence denotes Lastly, HPIV3, like RSV, does not cause visible damage to the tissue and HPIV3 does not cause the change in cell shape associated with RSV.
T201 80777-80934 Sentence denotes These model systems may help identify cellular receptors for RSV and HPIV3 and should be useful in studying the epithelial cell response to these infections.
T202 80935-81028 Sentence denotes Staphylococcus aureus is the most common cause of nosocomial infections in the United States.
T203 81029-81180 Sentence denotes Nosocomial S. aureus outbreaks have been linked to healthcare workers such that concern has been raised that S. aureus could be spread through the air.
T204 81181-81378 Sentence denotes Increased risk of S. aureus airborne transmission has been associated with increased S. aureus in the nose, male sex, snorting or sneezing, antibiotic use, cutaneous diseases, and viral infections.
T205 81379-81651 Sentence denotes A phenomenon entitled the "cloud baby" was originally described in 1960 by Eichenwald in which newborn infants nasally colonized with S. aureus had airborne dispersal of S. aureus associated with an upper respiratory tract viral infection (URI) (Eichenwald et al., 1960) .
T206 81652-81732 Sentence denotes Cloud Babies were capable of causing outbreaks both in the hospital and at home.
T207 81733-81882 Sentence denotes The concept was expanded to include adults when an outbreak of S. aureus infections occurred in two newborn nurseries associated with a single nurse.
T208 81883-82098 Sentence denotes During the outbreak investigation, it was noted that the likelihood of this nurse transmitting S. aureus increased five-fold during periods of time when she had an upper respiratory infection (Belani et al., 1986) .
T209 82099-82251 Sentence denotes The possibility that "cloud adults" exist was substantiated during an investigation of another point-source outbreak of S. aureus nosocomial pneumonias.
T210 82252-82311 Sentence denotes This outbreak was tied to a single physician who had a URI.
T211 82312-82391 Sentence denotes The outbreak lasted 3 weeks which was coincident with his respiratory symptoms.
T212 82392-82529 Sentence denotes This physician was then experimentally infected with rhinovirus and open agar plates were placed around him to detect airborne dispersal.
T213 82530-82710 Sentence denotes Following rhinovirus infection, there was a 40-fold increase in airborne dispersal of S. aureus and this increase could be decreased 75% by wearing a mask (Sherertz et al., 1996) .
T214 82711-82882 Sentence denotes To further investigate the concept of a "cloud adult", a special chamber was designed in which laminar airflow was maintained and HEPA filters were used to purify the air.
T215 82883-83090 Sentence denotes Airborne dispersal of S. aureus was found to be greatest when street clothes were worn into the chamber, less when sterile garb was donned without a mask, and least when the sterile garb with mask were used.
T216 83091-83188 Sentence denotes The greatest amount of S. aureus was cultured after the volunteers were infected with rhinovirus.
T217 83189-83389 Sentence denotes There was an approximately two-fold mean increase in airborne dispersal of S. aureus following experimental rhinovirus infection with peak airborne dispersal as high as 100-fold greater than baseline.
T218 83390-83589 Sentence denotes Masks did not blunt this effect but wearing barrier garb (gown, gloves, booties, cap) did, suggesting that in most volunteers the airborne dispersal is not coming in real time directly from the nose.
T219 83590-83738 Sentence denotes Independent predictors of detecting S. aureus in the area around the volunteers included wearing street clothes, sneezing, and rhinovirus infection.
T220 83739-83905 Sentence denotes Cough and the severity of the cold were not related to S. aureus colony counts, and the greatest colony counts were obtained after the catarrhal phase of the illness.
T221 83906-84103 Sentence denotes Recent studies have shown that coagulase-negative Staphylococci have increased airborne dispersal after a rhinovirus infection suggesting that the "cloud phenomenon" may occur with other organisms.
T222 84104-84379 Sentence denotes This finding may be quite important as it suggests a possible mechanism for the outbreaks of meningococcal, pneumococcal, and streptococcal (Group A) infection that occur in the community and in semi-closed populations as an aftermath to outbreaks of influenza and viral URI.
T223 84380-84674 Sentence denotes One potential hypothesis to explain the pathogenesis of the "cloud adult" is that infection results in inflammation that in turn reduces the diameter of the nasal passage and increases the rate of airflow and associated aerosolization of particulates, including bacteria, by the venturi effect.
T224 84675-84832 Sentence denotes To test this hypothesis, volunteers with allergic rhinitis who had their medication held but did not have culturable virus were placed into the test chamber.
T225 84833-84919 Sentence denotes After stopping their medications, there was increased airborne dispersal of S. aureus.
T226 84920-85040 Sentence denotes The inflammatory response in the nose, not the rhinovirus itself, may be central to the mechanism of airborne dispersal.
T227 85041-85246 Sentence denotes Imperial College, London, UK) RSV bronchiolitis in infancy is strongly associated with the later development of asthma (Stein et al., 1999) and RSV is also implicated in virus induced asthma exacerbations.
T228 85247-85476 Sentence denotes Protective immunity to re-infection with RSV is incomplete and of short duration; previously infected infants and adults remain susceptible to re-infection with antigenically closely related viruses or the identical virus strain.
T229 85477-85621 Sentence denotes Recent evidence suggests that virus-induced asthma exacerbations may be associated with deficient type 1 immunity (Papadopoulos et al., 2002d) .
T230 85622-85898 Sentence denotes A deficit in IFN-␥/IL-4 mRNA ratio and IL-18 mRNA expression by peripheral blood mononuclear cells (PBMC) has been observed in infants that developed RSV bronchiolitis compared to infants from the same birth cohort with a normal response to RSV infection (Legg et al., 2003) .
T231 85899-86023 Sentence denotes IL-15 is a type 1 inducing cytokine produced by resident airway cells in response to inflammatory stimuli such as infection.
T232 86024-86358 Sentence denotes By promoting (i) long-term survival of NK and memory CD8 + T cells and (ii) type 1 function (IFN-␣ production and cytotoxicity) in NK, NK T cells and memory CD8 + T cells, IL-15 plays an important role in antiviral immune response (Biron et al., 1999; Carson et al., 1997; Kennedy et al., 2000; Liu et al., 2002; Zhang et al., 1998) .
T233 86359-86515 Sentence denotes We hypothesized that in a type 2 cytokine rich environment (as occurs in asthmatic airways), virus-induced production of type 1 cytokines is down-regulated.
T234 86516-86652 Sentence denotes To test this hypothesis, we studied RSV-induced production of IL-15 in respiratory epithelial cells in the absence and presence of IL-4.
T235 86653-86812 Sentence denotes A549 cells, a human lung type 2 alveolar carcinoma cell line, were infected with RSV A2 strain in the presence of 10 ng/ml of IL-4 or in its absence (control).
T236 86813-86892 Sentence denotes RSV induced IL-15 production in A549 cells in a time-and dose-dependent manner.
T237 86893-87001 Sentence denotes Experiments conducted in the presence of IL-4 showed a down-regulation in IL-15 production by RSV infection.
T238 87002-87241 Sentence denotes Decreased production of IL-15 in the lung in respiratory viral infections in asthmatic subjects may be a possible pathway for deficient antiviral immune responses, delayed virus eradication and virus-induced exacerbations of atopic asthma.
T239 87242-87578 Sentence denotes Further study directions include repeating experiments on other cell lines and on primary bronchial epithelial cells, gene expression studies to define the mechanisms of RSV-induced IL-15 production and its down-regulation by IL-4, and comparison of IL-15 production during respiratory viral infections in normal and asthmatic subjects.
T240 87579-87858 Sentence denotes RSV: childhood wheezing, 'asthma', and atopy (Peter Openshaw, Imperial College, London, UK) Asthma, by definition, is reversible airflow obstruction (change in FEV 1 /PERF >14%), with bronchial hyperresponsiveness to irritants such as exercise, chemicals, allergens, or cold air.
T241 87859-87980 Sentence denotes Most patients have wheezing, cough, or shortness of breath, and all have evidence of increased inflammation in the lungs.
T242 87981-88375 Sentence denotes Wheezing can be classified into four types, predominating at distinct ages: transient infant wheeze (likely related to exposure to smoke or small lungs); early wheeze (typically after a viral illness); classical atopic asthma (which tends to be familial) and chronic obstructive airway disease (typically resulting from chronic irritant exposure, such as smoke, throughout a person's lifetime).
T243 88376-88584 Sentence denotes Of 826 children fol-lowed from birth until age 6, 51.5% never wheezed, 19.9% had transient wheezing, 15% had onset of wheezing after 3 years of age, and 13.7% had persistent wheezing (Martinez et al., 1995) .
T244 88585-88690 Sentence denotes Five to six million American children have asthma, making it the most common chronic disease in children.
T245 88691-88894 Sentence denotes It is estimated that there are 470,000 hospitalizations per year, 5000 deaths per year, and an estimated excess expenditure of over US$ 6 billion per year worldwide as the result of asthma exacerbations.
T246 88895-89029 Sentence denotes As a result of this significant burden, many have studied asthma and its relationship to respiratory viral diseases, particularly RSV.
T247 89030-89214 Sentence denotes In one study, 47 children hospitalized for RSV lower respiratory tract illness (LRI) during the first year of life were compared to 93 controls with no or mild RSV upper tract illness.
T248 89215-89337 Sentence denotes Patients with lower tract illness had a significantly increased risk of wheezing by 7 years of age (Sigurs et al., 2000) .
T249 89338-89457 Sentence denotes Another study compared 207 children with mild RSV LRI to control children without LRI during the first 3 years of life.
T250 89458-89605 Sentence denotes The patients that had LRI has statistically significant increased frequency of wheeze compared to the control through age 11 (Stein et al., 1999) .
T251 89606-90038 Sentence denotes In total, nine controlled studies with 2-13 years of follow-up have been conducted, and all demonstrated increased frequency of lower respiratory tract symptoms and/or airflow obstruction after bronchiolitis; of all enrolled patients in these studies, 82% has lower respiratory symptoms within 2 years, 69% within 3.5 years, 55% within 4-5 years, and 31% within 6-8 years (Hall et al., 1984; Henry et al., 1983; Webb et al., 1985) .
T252 90039-90370 Sentence denotes To further investigate a potential link between RSV bronchiolitis and asthma, Wenzel and colleagues conducted a long-term follow-up study of 13 children with bronchopulmonary dysplasia (PBD) who were treated with RSV polyclonal immunoglobulin (RSV-Ig) during infancy and 26 age-matched controls with BPD who did not receive RSV-Ig.
T253 90371-90518 Sentence denotes Unfortunately, the groups were not matched for sex (more male children in the treated group), for RSV LRI (6/13 versus 21/26), or for cat exposure.
T254 90519-90782 Sentence denotes However, 7-10 years after enrollment, RSV-Ig treated children had significantly better FEV1/FVC ratios and airway conductance, in addition to less atopy, missed school, colds, asthma attacks, hospitalizations, and use of asthma medications (Wenzel et al., 2002) .
T255 90783-91008 Sentence denotes These results raised the question of whether normal lungs become asthmatic after viral infection or if weakened lungs that would become asthmatic without infection are also at increased risk of wheezing after viral infection.
T256 91009-91195 Sentence denotes To address this question, we collected peripheral blood mononuclear cells from 37 7-8-year-old children with a history of RSV bronchiolitis and 70 without a history of RSV bronchiolitis.
T257 91196-91330 Sentence denotes These PBMCs were thawed, stimulated with a number of antigens, and then had IL-4 and IFN-␥ ELISPOT and proliferation assays performed.
T258 91331-91510 Sentence denotes Bronchiolitic patients had increased IL-4 response to RSV and Fel d antigens, but not to other tested antigens (Der p, Bet v, tetanus toxoid, PHA, and media) (Pala et al., 2002) .
T259 91511-91642 Sentence denotes A second study took mice and exposed them to intranasal ovalbumin followed by intravenous ovalbumin 18 days after initial exposure.
T260 91643-91877 Sentence denotes Mice who were exposed to intranasal ovalbumin after being exposed to RSV or influenza A had an anaphylactic reaction to intravenous ovalbumin, while mice exposed without infections had minimal symptoms (O'Donnell and Openshaw, 1998) .
T261 91878-92065 Sentence denotes Taken together, these results suggest that mild infection results in low level IFN-␥ production, while bronchiolitis results in increased IL-4 production in addition (Pala et al., 2002) .
T262 92066-92146 Sentence denotes The age of acquisition of RSV infection may impact on future asthmatic sequelae.
T263 92147-92210 Sentence denotes Most cases of RSV bronchiolitis occur prior to 4 months of age.
T264 92211-92346 Sentence denotes At the time of birth, neonates have a strong Th2 immune response, whereas Th1 response matures with exposure to environmental antigens.
T265 92347-92459 Sentence denotes Viral and gastrointestinal infections promote Th1 responses, which are responsible for protection against atopy.
T266 92460-92663 Sentence denotes Such immune maturation hypotheses have been documented by stimulating tonsil extracts from children with RSV and PHA in vitro; these stimulations result in increasing levels of IFN-␥ with increasing age.
T267 92664-92929 Sentence denotes When mice are infected with RSV at 1 day, 1, 4, and 8 weeks of age and then reinfected at 12 weeks of age, infection of older mice resulted in increased viral load, likely secondary to larger lungs with more cells to infect, but similar rates of clearance of virus.
T268 92930-93080 Sentence denotes Secondary infection caused substantial weight loss in mice primarily infected at 1 day and 1 week, but not in mice initially infected at 4 or 8 weeks.
T269 93081-93229 Sentence denotes Mice primarily infected at 1 day and 1 week had increased number of total cells, CD8 T cells, eosinophils, and neutrophils extracted from the lungs.
T270 93230-93397 Sentence denotes Mice infected at 2 and 4 weeks had increased production of IFN-␥ and decreased production of IL-4 compared to mice infected at 1 day and 1 week (Culley et al., 2002) .
T271 93398-93505 Sentence denotes This data suggests that the nature of the secondary response is determined by the age at primary infection.
T272 93506-93669 Sentence denotes RSV infection early in life sensitizes for severe response to viral challenge later in life and T-cell priming in the neonatal period may explain this association.
T273 93670-93820 Sentence denotes Delaying RSV infection beyond infancy could have long-term benefits in terms of less severe disease, decreased atopy, and lower frequencies of asthma.
T274 93821-94062 Sentence denotes Potential mechanisms for this delayed effect include chronic, persistent, or latent viral infection, remodeling of the lung after infection, permanent epithelial damage, immunologic priming or tolerance, or bystander antigenic sensitization.
T275 94063-94134 Sentence denotes Further studies will need to be done to investigate these alternatives.
T276 94135-94322 Sentence denotes Several studies suggest that some infections in infancy protect against asthma and allergic disease while lower respiratory tract viral illness are associated with wheezing later in life.
T277 94323-94558 Sentence denotes In general infections induce type 1 responses (IFN-␣, IL-12, IL-15, IL-18, IFN-␥) while allergic disorders are associated with type 2 responses (IL-4, IL-5, IL-9, and IL-13); type 1 and type 2 responses are mutually counter-regulatory.
T278 94559-94769 Sentence denotes Immune responses at birth are skewed toward type 2, and microbial exposure is required to develop type 1 responses, so environmental exposure early in life likely contributes to maturation of the immune system.
T279 94770-94968 Sentence denotes Children from large families and those who are lower in birth order, both markers for increased exposure to microbes, are at reduced risk of developing hay fever, eczema, and allergen sensitization.
T280 94969-95114 Sentence denotes Likewise, hepatitis A, likely a marker of load of infectious exposure, is associated with decreased risk of allergies (Matricardi et al., 2002) .
T281 95115-95233 Sentence denotes Respiratory virus infections have been associated with an increased risk of wheezing illness and atopic sensitization.
T282 95234-95381 Sentence denotes RSV has the strongest association (Sigurs et al., 2000) but the Tucson Children's Respiratory Infection Study has shed light onto other infections.
T283 95382-95568 Sentence denotes Children were initially followed until 3 years of age and had samples collected for virologic studies when the child experienced any signs or symptoms of lower respiratory tract illness.
T284 95569-95660 Sentence denotes Children then had follow up visits at 6, 8, 11, and 13 years of age to evaluate for wheeze.
T285 95661-95786 Sentence denotes There was increased risk of later wheezing when lower respiratory tract illness had developed as the result of RSV infection.
T286 95787-95966 Sentence denotes However, lower respiratory tract illnesses resulting from other virus types were also significantly associated with increased risk of wheezing later in life (Stein et al., 1999) .
T287 95967-96092 Sentence denotes Another study found substantial contributions of rhinoviruses to the severity of bronchiolitis (Papadopoulos et al., 2002c) .
T288 96093-96416 Sentence denotes Potential explanations for the relationship of early virus-related lower respiratory illness including RSV bronchiolitis is that patients with lower respiratory illness/bronchiolitis may have smaller airways, deficient type 1 or increased type 2 immunity, or develop increased allergen sensitization during acute infection.
T289 96417-96665 Sentence denotes To evaluate these potential explanations, Legg and associates collected nasal lavages on days 1, 2 and 5-7 of illness and peripheral blood mononuclear cells on days 5-7 of illness from children in their first year of life with proven RSV infection.
T290 96666-96913 Sentence denotes At both time points, infants with bronchiolitis had a higher IL4/IFN-␥ and IL-10/IL-12 ratios in nasal lavages and a depressed level of the IFN-␥/IL-4 mRNA ratio and of IL-18 mRNA expression in blood mononuclear cells compared to infants with URI.
T291 96914-97018 Sentence denotes Slower clearance of virus (PCR viral load) was seen in patients with bronchiolitis (Legg et al., 2003) .
T292 97019-97187 Sentence denotes From these results, the authors concluded that RSV bronchiolitis is associated with deficient type 1 immunity and impaired virus clearance (Mallia and Johnston, 2002) .
T293 97188-97342 Sentence denotes Day care attendance and having greater than two siblings increases the risk of wheeze early in life but decreases risk later in life (Ball et al., 2000) .
T294 97343-97453 Sentence denotes Others have also found differences in risk of wheezing between patients with URIs compared to those with LRIs.
T295 97454-97652 Sentence denotes Patients with two or more episodes of URI before 1 year of age had a 50% reduced risk of asthma at 7 years of age, while patients who had LRI with wheeze were at increased risk (Illi et al., 2001) .
T296 97653-97934 Sentence denotes In conclusion, it appears that the risk of allergic disease later in life can be reduced by high overall load of infectious disease (including respiratory viral infections) early in life, but exposure to respiratory infections early in life causes increased morbidity at that time.
T297 97935-98378 Sentence denotes Likewise, individual infections in subjects at risk, such as those with deficient type 1 immunity or small airways, result in infections that are more severe, more likely to involve the lower respiratory tract, and are strongly associated with wheezing later in life. (Michael Boeckh, Fred Hutchinson Cancer Research Center, Seattle, WA) Increasingly, respiratory viruses are being recognized as significant pathogens in transplant recipients.
T298 98379-98529 Sentence denotes Serious illness due to respiratory viruses appears most common in hematopoietic stem cell transplant (HSCT) recipients and lung transplant recipients.
T299 98530-98663 Sentence denotes The most frequently isolated respiratory viruses are respiratory syncytial virus, parainfluenza, influenza viruses, and rhinoviruses.
T300 98664-98904 Sentence denotes A targeted surveillance system has found an attack rate among the approximately 4800 patients who received HSCT at the Fred Hutchinson Cancer Research Center (FHCRC) over the past 12 years to be 7% for PIV, 4% for RSV, and 1% for influenza.
T301 98905-99054 Sentence denotes Most respiratory virus infections (RVIs) in the Seattle area, like most temperate areas, occur during the winter months (November to May in Seattle).
T302 99055-99219 Sentence denotes Our retrospective review found that respiratory viral pneumonia was associated with an increased risk of death (HR 2.2 for RSV, 3.4 for PIV, and 2.4 for influenza).
T303 99220-99353 Sentence denotes Likewise, patients with respiratory viral infections were at increased risk for invasive aspergillosis (HR 2.1) (Marr et al., 2002) .
T304 99354-99490 Sentence denotes This finding suggests that the clinical effects of RVIs are likely both from direct lytic effects and indirect immunomodulatory effects.
T1 99491-99671 Sentence denotes Recently, the group at the FHCRC has conducted retrospective studies of >4000 HSCT recipients to determine the incidence, risk factors, and outcomes of respiratory viral illnesses.
T2 99672-99742 Sentence denotes Risk factors for acquisition of RSV, PIV, and influenza were analyzed.
T3 99743-100013 Sentence denotes Season, male sex, and transplant type were associated with increased risk of developing RSV infection; unrelated donor status was associated with PIV infection; and season, female sex, and underlying malignancy were associated with increased risk of influenza infection.
T4 100014-100164 Sentence denotes Data from other studies suggest that CD4 lymphopenia also enhances the risk of acquisition of a respiratory viral illness in a dose-dependent fashion.
T5 100165-100266 Sentence denotes Lymphopenia is also associated with increased risk of progression to lower respiratory tract disease.
T6 100267-100507 Sentence denotes Steroids were noted to be protective against progression in influenza infection but to be a risk factor, in a dose-dependent manner, for progression in PIV infections (Chakrabarti et al., 2001; Ljungman et al., 2001; Nichols et al., 2001) .
T7 100508-100596 Sentence denotes HSCT recipients with RVIs typically develop upper respiratory tract infection initially.
T8 100597-100691 Sentence denotes A smaller percentage progress to lower respiratory tract involvement after a median of 7 days.
T9 100692-100806 Sentence denotes Unfortunately, it is not yet possible to determine accurately which patients will progress to lower tract disease.
T10 100807-100910 Sentence denotes RSV has been recognized to have one of the highest rates of progression to the lower respiratory tract.
T11 100911-101063 Sentence denotes Most patients develop RSV during the first 3 months post-transplant with a median of onset ranging 40-50 days post-transplant (Falsey and Walsh, 2000) .
T12 101064-101241 Sentence denotes Most patients typically presented with cough (87-100%), fever (65-100%), rhinorrhea or sinus congestion (61-82%) and less frequently with sore throat (11-27%) and otalgia (36%).
T13 101242-101404 Sentence denotes A large percentage of patients have rales or rhonchi on exam (50-100%), have chest X-ray infiltrates (58-75%), and manifest wheezing (35-56%) or dyspnea (36-45%).
T14 101405-101499 Sentence denotes Once RSV has progressed to pneumonia, there is no clear prospective data to direct management.
T15 101500-101770 Sentence denotes Several, mostly small, retrospective studies have documented poor response to intravenous ribavirin alone (20-100% survival) or in combination with aerosolized ribavirin with (50% survival) or without (40% survival) IVIG (Lewinsohn et al., 1996; Ljungman et al., 2001) .
T16 101771-102116 Sentence denotes Better results have been documented with aerosolized ribavirin alone (22-66% survival) (Harrington et al., 1992; Ljungman et al., 2001) , or in combination with IVIG (50-68% survival) (Ghosh et al., 2001; Ljungman et al., 2001; Whimbey et al., 1995) , RSV-Ig (86-91% survival) (DeVincenzo et al., 2000; Small et al., 2002) or palivizumab (83%) .
T17 102117-102254 Sentence denotes These data suggest that optimal therapy for RSV pneumonia involves the combination of aerosolized ribavirin plus an antibody preparation.
T18 102255-102305 Sentence denotes Starting antiviral therapy early impacts survival.
T19 102306-102469 Sentence denotes If combination therapy is started before respiratory failure begins, 78-80% of patients survive, compared to none who have therapy begun after respiratory failure.
T20 102470-102734 Sentence denotes Potential risk factors for increased mortality in patients with RSV pneumonia includes the co-pathogens, concomitant immunosuppression (steroids, anti-lymphocyte antibodies), lymphopenia, preexisting lung disease, and the therapy used, including the time of onset.
T21 102735-102814 Sentence denotes Prevention strategies should be explored to limit the frequency of RSV disease.
T22 102815-102953 Sentence denotes Infection control is an important component to prevent infections, but is of limited value when the patient leaves the hospital or clinic.
T23 102954-103152 Sentence denotes Use of RSV-Ig or palivizumab for prophylaxis might be beneficial, although the two preparations have never been studied in this population in a randomized fashion and would be very expensive to use.
T24 103153-103373 Sentence denotes Preemptive therapy, with aerosolized ribavirin, could be used in patients with asymptomatic shedding or RSV URIs, although early detection methods limit the ability to implement preemptive management of these infections.
T25 103374-103466 Sentence denotes Additionally, these preemptive strategies have not been tested for RSV in randomized trials.
T26 103467-103622 Sentence denotes As a result of the potentially devastating outcome of RSV and other RVIs, there has been some concern about the need to delay HSCT in symptomatic patients.
T27 103623-103901 Sentence denotes In a retrospective case series of 10 patients who underwent autologous HSCT for advanced multiple myeloma who also had active RSV URI, none of the patients progressed to LRI, required transfer to the ICU, or died after transplantation as the result of RSV (Aslan et al., 1999) .
T28 103902-103974 Sentence denotes One patient developed tracheobronchitis and required oxygen transiently.
T29 103975-104176 Sentence denotes The strategy currently used is to delay transplant if upper respiratory symptoms are present and not do the transplant until cessation of symptoms and the nasal wash is negative for virus (CDC, 2000) .
T30 104177-104254 Sentence denotes At FHCRC we found that 37 patients who developed RSV URI prior to transplant.
T31 104255-104375 Sentence denotes Thirty-one had the URI before conditioning and two developed pneumonia after transplantation with response to treatment.
T32 104376-104424 Sentence denotes Six were discovered after starting conditioning.
T33 104425-104591 Sentence denotes Of the three that had the transplant aborted, none developed RSV pneumonia, whereas two of those that continued with transplantation developed pneumonia and one died.
T34 104592-104738 Sentence denotes This same study documented pre-transplant shedding in patients for up to 42 days with most patients having shedding of virus for at least 1 month.
T35 104739-104820 Sentence denotes Delay in transplantation did not result in progression of the underlying disease.
T36 104821-104933 Sentence denotes Thus, delay of transplant for at least 1 month should be advised for all myeloablative transplants (CDC, 2000) .
T37 104934-105085 Sentence denotes The current study was designed to assess the clinical and microbiological characteristics of RSV infection in patients with hematological malignancies.
T38 105086-105275 Sentence denotes Adult in-and out-patients with hematologic malignancy, including HSCT recipients, were included in the study if they had signs and symptoms of an upper or lower respiratory tract infection.
T39 105276-105454 Sentence denotes A total of 251 nasopharyngeal aspirates and 19 bronchoalveolar lavages were collected during 256 episodes of respiratory infection in 198 patients from October 1999 to June 2002.
T40 105455-105530 Sentence denotes One or multiple respiratory viruses, were identified in 122 episodes (48%).
T41 105531-105755 Sentence denotes Influenza A virus was found in 67 cases, followed by respiratory syncytial virus in 24, enteroviruses in 12, adenoviruses in 12, influenza B virus in 8, parainfluenza viruses in 10 (5 PIV 1 and 5 PIV 3) and two rhinoviruses.
T42 105756-105810 Sentence denotes In eight cases, a mixed viral infection was diagnosed.
T43 105811-105959 Sentence denotes Among the 24 episodes of RSV infection, RSV was detected alone in 18, while eight patients also had infections with influenza A and in one with CMV.
T44 105960-106103 Sentence denotes Most (88%) of the patients cleared the infection during the first 2 weeks, while one patient each had detectable virus until day 18 and week 5.
T45 106104-106219 Sentence denotes Thirty-eight percent of the patients acquired their RSV infection in the hospital after a median of 15 days (range:
T46 106220-106231 Sentence denotes 5-26 days).
T47 106232-106400 Sentence denotes Upper respiratory tract infection was diagnosed in 17 patients, LRI in 7, and only one patient with upper respiratory tract infection at presentation progressed to LRI.
T48 106401-106483 Sentence denotes Six patients received inhaled ribavirin and only one of the treated patients died.
T49 106484-106657 Sentence denotes This study prospectively confirmed that RSV occurs typically in the winter months, can be nosocomially transmitted, and can frequently progress to involve the lower airways.
T50 106658-106733 Sentence denotes Most patients clear the infection during the first 2 weeks after infection.
T51 106734-107252 Sentence denotes RSV infection was associated with a low mortality in this heterogeneous population, despite 33% having lower respiratory tract symptoms. (Tuomas Jartti, University of Turku, Turku, Finland) Up to 20-25% of all children have at least one episode of wheezing, and most cases of asthma exacerbations are the result of viral respiratory infections (Glezen et al., 2000; Habbick et al., 1999; Hesselmar et al., 2000; Johnston et al., 1995; Martinez et al., 1995; McIntosh, 1976; Mertsola et al., 1991; Rakes et al., 1999) .
T52 107253-107415 Sentence denotes A prospective study was conducted to determine which respiratory viruses are isolated from children in Finland who are hospitalized for acute expiratory wheezing.
T53 107416-107465 Sentence denotes A total of 293 hospitalized children (median age:
T54 107466-107483 Sentence denotes 1.6 years, range:
T55 107484-107574 Sentence denotes 3 months to 15 years) were recruited from September 2000 until May 2002 in Turku, Finland.
T56 107575-107679 Sentence denotes Patients with chronic lung disease, heart disease, and chronic steroid use were excluded from the study.
T57 107680-107941 Sentence denotes In addition to serologies, nasal aspirates were tested by PCR for rhino-, entero-, corona-and metapneumo-virus (hMPV), antigen detection and culture for influenza A and B, parainfluenza type 1, 2 and 3, adenovirus and RSV, and culture for rhino-and enterovirus.
T58 107942-108159 Sentence denotes A potential causative viral agent was found in 88.7% of cases: RSV 27%, entero-25%, rhino-22%, nontypable picorna-16.4%, adenovirus 5%, hMPV 4%, parainfluenza type 1/3 5%, influenza A and B both 1% and coronavirus 1%.
T59 108160-108219 Sentence denotes Eighteen percent of patients had multiple viruses detected.
T60 108220-108285 Sentence denotes Patients with rhino-and entroviruses were slightly older (median:
T61 108286-108347 Sentence denotes 2.2 years) than patients with RSV and hMPV infection (median:
T62 108348-108359 Sentence denotes 0.9 years).
T63 108360-108487 Sentence denotes Patients with RSV and hMPV typically had longer durations of hospitalization than patients with other viral pathogens detected.
T64 108488-108587 Sentence denotes RVIs were associated with almost all episodes of wheezing leading to hospitalization in this study.
T65 108588-108791 Sentence denotes This study was also one of the first to demonstrate the contribution of hMPV, particularly during winter epidemics, and its correlation with wheezing (Jartti et al., 2002b; van den Hoogen et al., 2001) .
T66 108792-108999 Sentence denotes The prevalence of enterovirus was higher in this study than previously reported, and the results confirm the large contribution of picornaviruses, particularly rhinoviruses, to wheezing episodes in children.
T67 109000-109160 Sentence denotes Subbarao, NIAID, NIH, Bethesda, MD) One of the many key components to pandemic preparedness is the development of pandemic vaccines before the pandemic arrives.
T68 109161-109295 Sentence denotes Live-attenuated influenza vaccines (LAIV) are particularly appealing as they are typically easier to deliver than injectable vaccines.
T69 109296-109709 Sentence denotes Unfortunately, there are several issues that currently limit the development of these vaccines including the need to generate candidate vaccines in a BSL3+ facility, the wide range of avian viruses, the choice of vaccine development strategy (reverse genetics or reassortment), choice of donor virus (PR8 or LAIV), and the need to do extensive safety and immunogenicity testing of candidate in animals and humans.
T70 109710-109867 Sentence denotes An additional issue is selection of the optimal serologic assay (HAI, Nt, SRH) for determining immunogenicity and defining an appropriately protective titer.
T71 109868-110006 Sentence denotes The avian influenza H5N1, H9N2, H5N2, H7, and H6 subtypes have recently been identified as high priority for pandemic vaccine development.
T72 110007-110096 Sentence denotes Three candidate vaccines against H5N1, H5N2, and H9N2 are in early states of development.
T73 110097-110297 Sentence denotes The H5N1 × AA candidate vaccine is a modified HK H5N1×A/AnnArbor/6/60 cold-adapted, 6-2 reassortant virus that has been developed by reverse genetics as part of a collaboration between Aviron and CDC.
T74 110298-110426 Sentence denotes The virus replicates to 8.5-9.4 log 10 in eggs and has a mutagenized HA that decreases its cleavability by endogenous proteases.
T75 110427-110513 Sentence denotes The virus grows at 33 • C but not 39 • C and is not pathogenic in chickens or ferrets.
T76 110514-110653 Sentence denotes Studies in chickens demonstrated that the two candidate vaccines, MVS156 and MVS483, are immunogenic and reduce mortality after challenge .
T77 110654-110834 Sentence denotes The H9N2 G9/AA vaccine is a temperature-sensitive, cold-adapted, 6:2 reassortant virus generated by genetic reassortment in SPF eggs as part of a collaboration between NIH and CDC.
T78 110835-110983 Sentence denotes In mouse studies, intranasal application of the G9 reassortant virus resulted in low titers of the virus in the nose and minimal virus in the lungs.
T79 110984-111063 Sentence denotes The vaccine was also immunogenic in the mice and prevented challenge infection.
T80 111064-111222 Sentence denotes Finally, an H5N2 × AA cold-adapted virus that was developed also through genetic reassortment as part of a collaboration between NIH and CDC has been created.
T81 111223-111268 Sentence denotes Early studies of this candidate are on-going.
T82 111269-111339 Sentence denotes The first two vaccines are moving into human proof-ofprinciple trials.
T83 111340-111487 Sentence denotes The trials will be conducted with isolated volunteers who are vaccinated during the summer when influenza activity is minimal in the United States.
T84 111488-111598 Sentence denotes The key properties of the vaccine to be studied include infectivity, level of attenuation, and immunogenicity.
T85 111599-111729 Sentence denotes It is hoped that these and future studies will allow the development of seed lots of vaccine viruses for a range of avian viruses.
T86 111730-111895 Sentence denotes Additionally, alternative substrates for vaccine production and new adjuvants will need to be tested to enhance our armamentarium against pandemic influenza strains.
T87 111896-112067 Sentence denotes The trivalent cold-adapted influenza vaccine (CAIV-T) we tested from Wyeth Laboratories has a major advantage of being stable in liquid form without the need for freezing.
T88 112068-112358 Sentence denotes The study (D153P501) was designed to determine the efficacy of CAIV-T in a diverse Asian population of children age 12-36 months against culture-confirmed influenza illness, to assess the efficacy over serial influenza seasons, and to investigate the impact of CAIV-T on acute otitis media.
T89 112359-112484 Sentence denotes Subjects were blindly randomized in a 3:2 fashion to receive either the CAIV-T or placebo during the first year of the study.
T90 112485-112591 Sentence denotes A booster dose was given 35 days after the initial dose and a third dose was given 1 year after the first.
T91 112592-112758 Sentence denotes There were four study groups: CAIV-T (year 1, dose 1)/CAIV-T (year 1, dose 2)/CAIV-T (year 2); CAIV-T/CAIV-T/placebo; placebo/placebo/CAIV-T; placebo/placebo/placebo.
T92 112759-113138 Sentence denotes The studied enrolled 3174 healthy children between the age of 12 and <36 months whose parent or legal guardian gave written consent over 5 Table 2 , the efficacy of the vaccine against culture-confirmed illness was estimated to be 74.3% (95% CI 64.1-81.8) overall and the point estimates of efficacy against H1, H3 and B influenza infection were 82.3, 88.8, and 50, respectively.
T93 113139-113352 Sentence denotes From the interim analysis of the first year's data, it appears that CAIV-T confers substantial efficacy against culture-confirmed influenza in Asian children, despite regional differences in influenza circulation.
T94 113353-113499 Sentence denotes Additional data about the impact on AOM and the results of the second year of the study are in progress. (Harry Greenberg, MedImmune Vaccines, Mt.
T95 113500-113526 Sentence denotes View, CA) [Editorial note:
T96 113527-113818 Sentence denotes FluMist is an intranasal live-attenuated, cold-adapted, trivalent influenza vaccine that was approved by the FDA for use in healthy children and adults ages 5-49 years in June 2003.] Approval of the CAIV-T vaccine was slow because of concerns about safety and efficacy in certain age groups.
T97 113819-114012 Sentence denotes The vaccine has been shown to be genetically stable; viruses that have lost their temperature sensitivity or cold-adaptation RNA Virus Virosome have not been recovered from vaccinated patients.
T98 114013-114208 Sentence denotes Likewise, transmission of the vaccine virus is very infrequent; only one case has been documented in which a child in a day care setting acquired the vaccine strain from another vaccinated child.
T99 114209-114317 Sentence denotes The child who inadvertently acquired the virus did not have symptoms distinct from other placebo recipients.
T100 114318-114507 Sentence denotes The two major concerns on the part of the FDA after their initial advisory panel review in 2001 related to the questions of increased risk of pneumonia and asthma in vaccinated individuals.
T101 114508-114644 Sentence denotes Subsequent analyses of the original clinical trials data failed to demonstrate an increased risk of pneumonia in vaccinated individuals.
T102 114645-115003 Sentence denotes Data from a large study in the Northern California Kaiser system did demonstrate an increased number of medical encounters for asthma in vaccinated children compared to placebo vaccinated patients, but most of the visits were outpatient clinic visits for asthma management and did not temporally cluster within the 42-day post-vaccination observation period.
T103 115004-115111 Sentence denotes Many of these subjects had a history of asthma at the time of enrollment and none required hospitalization.
T104 115112-115179 Sentence denotes No asthma signal was detected in children above the age of 5 years.
T105 115180-115381 Sentence denotes The FDA advisory committee felt that there was adequate data on the efficacy and safety of the vaccine in children >59 months of age and adults younger than 50 to recommend approval for this age group.
T106 115382-115553 Sentence denotes As a result, further studies are needed in the age groups that have not been as completely studied, including young children and otherwise healthy adults aged 50-64 years.
T107 115554-115708 Sentence denotes Virosomes are functionally reconstituted, non-infectious viral envelopes retaining the cell entry properties of the native virus but lacking the RNA core.
T108 115709-115794 Sentence denotes In effect, virosomes represent a functional reconstitution of the hemagglutinin (HA).
T109 115795-115984 Sentence denotes One key difference between virus envelopes and the viro-some is that the virosome has HA molecules extending bidirectionally on the external and internal surfaces of the membrane (Fig. 1 ).
T110 115985-116161 Sentence denotes Virosomes are produced by first solubilizing inactivated influenza virus in an excess of the nonionic detergent octaethyleneglycon-n-dodecyl monoether (Stegmann et al., 1987) .
T111 116162-116228 Sentence denotes There are several theoretical advantages of virosomes as vaccines.
T112 116229-116351 Sentence denotes Virosomes maintain normal receptor binding and low-pH-dependent membrane fusion that occurs with intact influenza viruses.
T113 116352-116559 Sentence denotes Antigens may also be encapsulated within the lumen of the virosome, so that delivery of the antigen occurs intracellularly and the immune system can react against both the antigen within and on the virosome.
T114 116560-116871 Sentence denotes Theoretically, once taken up by an antigen presenting cell (APC), the virosome would fuse from within the acidic endosomal cell compartment, resulting in delivery of virosome-encapsulated antigen to the cell cytosol, while surface-associated antigen-including part of the HA-would remain behind in the endosome.
T115 116872-116934 Sentence denotes In the cytosol, the antigen would be processed by proteasomes.
T116 116935-117114 Sentence denotes Peptides produced would bind in the ER to MHC class I molecules to be ultimately presented on the APC surface, priming CD8 + T cells to mature into cytotoxic T lymphocytes (CTLs).
T117 117115-117268 Sentence denotes Within the endosome, virosomal antigen would be degraded to allow peptides to bind to MHC class II molecules and activate CD4 + T helper cells (Fig. 2) .
T118 117269-117408 Sentence denotes To document the ability of virosomes to activate both MHC class I and II mediated immune pathways, ovalbumin was included within virosomes.
T119 117409-117631 Sentence denotes The ovalbumin-containing virosomes were then incubated along with cultured murine dendritic cells in the presence of T cells in vitro to assay for MHC class I or class II presentation using specific CD8 + or CD4 + T cells.
T120 117632-117704 Sentence denotes The experiment was repeated with fusion-inactivated ovalbumin virosomes.
T121 117705-118006 Sentence denotes Fusion-active ovalbumin virosomes, but not fusion-inactive ovalbumin virosomes, empty virosomes, or free ovalbumin, resulted in efficient antigen presentation via the MHC I pathway, while both fusion-active and fusion-inactive ovalbumin virosomes accessed the MHC II pathway (Bungener et al., 2002b) .
T122 118007-118203 Sentence denotes Accordingly, in an in vivo mouse model, fusion-active ovalbumin-containing virosomes induced a powerful class I MHC-restricted CTL response against the ovalbumin antigen (Bungener et al., 2002a) .
T123 118204-118488 Sentence denotes Despite a concern that pre-existing antibodies against HA would block virosome-mediated CTL priming, mice with a high pre-existing antibody titer against virosomal HA developed a strong ovalbumin-specific CTL response after subsequent immunization with ovalbumin-containing virosomes.
T124 118489-118608 Sentence denotes It appears that antibody-opsonized virosomes are actively processed by dendritic cells through uptake via Fc receptors.
T125 118609-118719 Sentence denotes In conclusion, virosomes deliver antigens to dendritic cells for presentation on MHC class I and II molecules.
T126 118720-118795 Sentence denotes Fusion activity of the virosomes is essential for MHC class I presentation.
T127 118796-118933 Sentence denotes Virosomes induce maturation of dendritic cells as evidenced by upregulation of maturation markers including MHC class I and II molecules.
T128 118934-119055 Sentence denotes Although virosomes induce a mixed Th1/Th2 response, the response is skewed toward Th1 supporting priming of CTL activity.
T129 119056-119211 Sentence denotes As a result of their broad activation of the immune system and their ability to carry antigens, virosomes hold significant promise for vaccine development.
T130 119212-119372 Sentence denotes Virosomes could also be used as a platform for inclusion of immunomodulators or adjuvants to be used as potential intranasal and/or pandemic influenza vaccines.
T131 119373-119538 Sentence denotes Newer influenza virosome vaccines could be supplemented with other influenza antigens, such as the NP, M1, or M2, for further induction of humoral and CTL responses.
T132 119539-119652 Sentence denotes Potential other applications include vaccine development for bioterrorism agents and therapeutic cancer vaccines.
T133 119653-119893 Sentence denotes It is hoped that a virosomal influenza vaccine, initially developed by Berna Biotech and now under development by Solvay Pharmaceuticals, will be clinically available during the 2003-2004 influenza season in The Netherlands and Switzerland.
T134 119894-119988 Sentence denotes Fifteen clinical studies with 2970 patients have been done on the vaccine, called Influvac ® .
T135 119989-120087 Sentence denotes The vaccine has been well tolerated and is at least as effective as conventional subunit vaccines.
T136 120088-120244 Sentence denotes The vaccine has resulted in seroprotection in 77-100 and 60-100% and seroconversion in 52-87 and 30-77% for patients aged 18-60 and >60 years, respectively.
T137 120245-120470 Sentence denotes FluINsure TM is a trivalent, subunit influenza vaccine for intranasal inoculation that is composed of inactivated, partially-purified influenza antigens in non-covalent complex with the Proteosome TM adjuvant/delivery system.
T138 120471-120629 Sentence denotes The vaccine incorporates influenza antigens and Neisseria meningitidis outer membrane proteins (OMPs; predominantly porin B, otherwise known as class II OMP).
T139 120630-120768 Sentence denotes The processing of the Proteosome TM proteins leaves <0.1% nucleic acids and <2% N. meninigitidis lipopolysaccharides in the final product.
T140 120769-120977 Sentence denotes The process has been shown adaptable to egg-grown, detergent-split antigens inactivated by either formalin or ␤-propiolactone, and can also be used with recombinant antigens generated in a baculovirus system.
T141 120978-121172 Sentence denotes The FluINsure TM vaccine is stable by mouse immunogenicity and HA quantitation by single radial immunodiffusion (SRID) assays for ≥1 year at 2-8 • C, and at least 3-6 months at room temperature.
T142 121173-121319 Sentence denotes Although initially formulated with thimerosal, a preservative-free, 0.22 m filterable product packaged in a unit dose device is under development.
T143 121320-121497 Sentence denotes In mice, nasally-administered FluINsure TM induces serum IgG and serum HAI antibody responses equal to, or greater than, the same doses of the influenza antigens alone given IM.
T144 121498-121636 Sentence denotes In addition, intranasal FluINsure TM induces nasal and lung wash virus-specific IgA, whereas minimal IgA is detected following IM vaccine.
T145 121637-121765 Sentence denotes While intranasal influenza antigens alone may induce some secretory responses, FluINsure TM is 1-2 orders of magnitude superior.
T146 121766-121816 Sentence denotes In addition, FluINsure TM is associated with IgG1:
T147 121817-121894 Sentence denotes IgG2a ratios suggestive of a Th1-shifted response similar to virus infection.
T148 121895-122149 Sentence denotes This correlates with the observation that spleen cells of animals immunized with nasal FluINsure TM produce the same amount of IFN-␥ as those of animals immunized with IM vaccine when restimulated with virus in vitro, but much less IL-5 (a Th2 cytokine).
T149 122150-122413 Sentence denotes FluINsure TM can protect mice against a lethal respiratory challenge with mouse-adapted homologous virus in a manner indistinguishable from IM vaccine, and also protects ferrets against fever and/or virus shedding following challenge with recent epidemic strains.
T150 122414-122542 Sentence denotes Animal toxicity studies have demonstrated no product-related clinical toxicities or no CNS (including olfactory bulb) pathology.
T151 122543-122703 Sentence denotes A total of 331 adults have been enrolled in five clinical trials of monovalent prototypes or trivalent FluINsure TM to date (248 active; 83 placebo or control).
T152 122704-122807 Sentence denotes Monovalent prototype and trivalent data are highly consistent regarding both immunogenicity and safety.
T153 122808-122853 Sentence denotes There have been no significant safety issues.
T154 122854-123017 Sentence denotes The only reactogenicity significantly related to the vaccine formulation has been short-lived (≤2 days median), mild nasal congestion and clear, scanty rhinorrhea.
T155 123018-123081 Sentence denotes Such nasal symptoms have occurred in about 40-50% of vaccinees.
T156 123082-123154 Sentence denotes No subject receiving active treatment has had fever or hypersensitivity.
T157 123155-123424 Sentence denotes All FluINsure TM regimens containing at least one dose of ≥15 g of influenza HA have induced a three-to five-fold increase in serum HAI G.M.T. among subjects previously susceptible (HAI < 40) to the virus in question; and 45-65% of such subjects sero-convert by day 28.
T158 123425-123508 Sentence denotes All regimens tested have induced at least transient rises in nasal antibody levels.
T159 123509-123646 Sentence denotes Single-dose regimens induce approximately two-fold increases in geometric mean levels, and two-dose regimens induce 2.5-4-fold increases.
T160 123647-123805 Sentence denotes With the exception of the lowest single-dose regimen, all nasal antibody levels have persisted at elevated geometric mean levels during a 3-4-month follow-up.
T161 123806-124017 Sentence denotes Overall, immune responses to influenza A/H1N1 and A/H3N2 antigens have been quite consistent across multiple studies and lots, whereas responses to B antigens (as with many influenza vaccines) are more variable.
T162 124018-124196 Sentence denotes In trivalent studies performed to date, potentially protective immune responses have been seen in 70-80% for A/H1N1 strains, 70-90% for A/H3N2 strains, and 40-100% for B strains.
T163 124197-124359 Sentence denotes In summary, the FluINsure TM proteosome intranasal influenza vaccine appears to be a promising candidate as it is inexpensive and easily adaptable to new viruses.
T164 124360-124420 Sentence denotes It appears to be safe and immunogenic in animals and humans.
T165 124421-124741 Sentence denotes Further controlled studies of the protective efficacy of this vaccine are ongoing. (Reinhard Glück, Berna Biotech Ltd., Berne, Switzerland) One commercial parenterally administered virosomal influenza vaccine, called Inflexal V, was licensed in Switzer- land in 1997 and is currently available in 25 countries worldwide.
T166 124742-124925 Sentence denotes Studies in adults have demonstrated that the Inflexal V is equal to conventional inactivated influenza vaccine (Fluarix) in terms of immunogenicity and appears to be better tolerated.
T167 124926-125003 Sentence denotes A new virosomal vaccine, adjuvanted with MF59 is currently under development.
T168 125004-125069 Sentence denotes The adjuvanted vaccine has been tested in HIV+ and HIV− children.
T169 125070-125122 Sentence denotes Immune responses are more frequent in HIV− children.
T170 125123-125325 Sentence denotes Among the HIV+ children, sero-protective serum antibody responses were documented in 82, 57, and 61% for A H3, A H1, and B, respectively, while seroconversion was noted in 74, 57, and 52%, respectively.
T171 125326-125555 Sentence denotes Finally, a non-virosomal intranasal influenza vaccine that used Escherichia coli heat-labile toxin as an adjuvant, previously manufactured by Berna, was removed from the market because of a possible association with Bell's Palsy.
T172 125556-125710 Sentence denotes An epidemiologic investigation compared the frequency of Bell's palsy in 10,000 commercial IM vaccinated patients and 10,000 Berna IN vaccinated patients.
T173 125711-125770 Sentence denotes Two of the IM and five of the IN patients had Bell's Palsy.
T174 125771-125861 Sentence denotes Although the incidence was low, the company decided to remove the product from the market.
T175 125862-126014 Sentence denotes A RSV-A subunit vaccine that contains the F, G, and M proteins formulated with an alum adjuvant for intramuscular injection has been developed recently.
T176 126015-126095 Sentence denotes The target population for this vaccine will be the elderly and high-risk adults.
T177 126096-126214 Sentence denotes Preliminary studies of the immunogenicity and tolerability have been undertaken in 40 healthy adults aged 18-45 years.
T178 126215-126357 Sentence denotes Of 30 randomized to active vaccine, 24 were evaluable at 14 months, while 9 of 10 who were randomized to an alum-placebo group were evaluable.
T179 126358-126484 Sentence denotes The most frequent adverse effects from the vaccine included pain and tenderness that tended to resolve on its own within 72 h.
T180 126485-126562 Sentence denotes The data on the anti-F and anti-G antibody titers are summarized in Table 3 .
T181 126563-126684 Sentence denotes Although titers declined over time, the level at 14 months in vaccinated individuals was consistently above the baseline.
T182 126685-126838 Sentence denotes This study showed that the vaccine was safe and immunogenic, although annual vaccination would likely be required to maintain protective antibody levels.
T183 126839-127137 Sentence denotes A follow-up study gave active vaccine to 12 vaccinees and 7 placebo Table 4 Immunogenicity of an RSV-A subunit vaccine given 14 months after the first vaccine Log 2 geometric mean titer % With four-fold increase in titer recipients from the first study at 14 months after their initial vaccination.
T184 127138-127196 Sentence denotes As shown in Table 4 , antibody titers decreased over time.
T185 127197-127313 Sentence denotes Revaccination was immunogenic suggesting that annual vaccination may allow the maintenance of protective antibodies.
T186 127314-127369 Sentence denotes Further clinical trials with this vaccine are underway.
T187 127370-127567 Sentence denotes BBG2Na is a recombinant chimeric protein comprised of BB (the albumin binding domain of Streptococcal protein G) and G2Na (residues 130-230 of the RSV-A Long strain G protein) expressed in E. coli.
T188 127568-128086 Sentence denotes In pre-clinical studies, we found that BBG2Na formulated in alum was immunogenic and protective against RSV-A and -B challenges , was immunogenic and protective in murine neonates, even in the presence of high anti-RSV maternal antibody titers (Brandt et al., 1997; Siegrist et al., 1999) , did not induce evidence of enhanced pathology (Corvaia et al., 1997; Plotnicky-Gilquin et al., 1999b; Power et al., 2001a) , and protected via antibodies and CD4 + T cells (Plotnicky-Gilquin et al., 1999a Power et al., 2001b) .
T189 128087-128348 Sentence denotes A dose-escalating phase I study in 108 healthy young adults, aged 18-45 years old, demonstrated that BBG2Na + alum was well-tolerated and immunogenic, as demonstrated by specific antibody responses following intra-muscular (IM) injection (Power et al., 2001b) .
T190 128349-128465 Sentence denotes Indeed, 63-100% of subjects from each of the three vaccine groups had more than two-fold IgG antibody rises to G2Na.
T191 128466-128593 Sentence denotes Furthermore, 33-71% of subjects had more than two-fold increases in virus neutralization (VN) titers after 100 and 300 g doses.
T192 128594-128689 Sentence denotes Doses of 100 and 300 g demonstrated similar immunogenicity, while 10 g induced lower responses.
T193 128690-128813 Sentence denotes Apart from slight increases in VN titers following second dose, there was no apparent advantage of giving more than 1 dose.
T194 128814-128991 Sentence denotes The vaccine resulted in no severe adverse events, but 15-22% of patients had mild pain, redness, or edema at the injection site and 2.5% developed a fever following vaccination.
T195 128992-129157 Sentence denotes A phase II study in 307 ambulatory elderly adults, aged 60-80 years, was undertaken to determine the dose regimen of BBG2Na to be used for phase III efficacy trials.
T196 129158-129303 Sentence denotes Patients were randomized, in a blinded fashion, to doses of 50, 100 or 200 g or placebo administered IM either once or twice at 4-week intervals.
T197 129304-129469 Sentence denotes The most frequent adverse effects of the vaccine were local reactions that consisted mainly of pain and to a much lesser extent, local redness, induration and edema.
T198 129470-129644 Sentence denotes Oral temperatures of >37.5 • C were observed in four individuals, while there was a tendency to have more reactions with the highest vaccine dose and with a second injection.
T199 129645-129731 Sentence denotes One case of "flu-like syndrome" was recorded with a transient rise of hepatic enzymes.
T200 129732-129805 Sentence denotes Two cases of hypersensitivity type III-like reactions were also recorded.
T201 129806-129868 Sentence denotes Both were rapidly resolved within a few days with no sequelae.
T202 129869-130078 Sentence denotes The overall tolerance profile was favorable, and an independent Experts Board recommended that clinical development should be continued, but with increased safety documentation in the phase III efficacy study.
T203 130079-130192 Sentence denotes As expected, antibody responses were lower in the elderly than those previously observed in healthy young adults.
T204 130193-130376 Sentence denotes Nonetheless 50-70 and 35-50% of subjects demonstrated at least two-and four-fold rises in anti-G2Na antibody titers, respectively, at 1 month post-vaccination, depending on the group.
T205 130377-130453 Sentence denotes Furthermore, >30% of subjects also demonstrated two-fold VN titer increases.
T206 130454-130572 Sentence denotes There was no dose-response evident between the three doses tested, and no boost was evident following the second dose.
T207 130573-130698 Sentence denotes During follow-up, GM antibody titers dropped progressively, such that by 12 months most subjects returned to baseline titers.
T208 130699-130832 Sentence denotes In conclusion, these data indicate that BBG2Na + alum is immunogenic in the elderly and that a single dose regimen probably suffices.
T209 130833-131145 Sentence denotes However, safety monitoring would be an essential component for the phase III efficacy studies. (Peter Wright, Vanderbilt University Medical Center, Nashville, TN) RSV affects 75% of children during their first year of life and is responsible for over 100,000 hospitalizations and 500 deaths per year in children.
T210 131146-131253 Sentence denotes The additional costs attributable to RSV infection has been calculated to be over US$ 300 million per year.
T211 131254-131458 Sentence denotes Although 53% of children have no risk factors, many children that have infections severe enough to require hospitalization were born premature, had congenital heart disease, or bronchopulmonary dysplasia.
T212 131459-131579 Sentence denotes RSV causes illness from December to March and accounts for 4% of URIs among community-dwelling children and 17% of LRIs.
T213 131580-131684 Sentence denotes To help combat this disease, a cold-passage, live-attenuated vaccine was created using reverse genetics.
T214 131685-131906 Sentence denotes The resultant 248/404/ SH temperature-sensitive, attenuated virus has been used to vaccinate unscreened adults, RSV seropositive children 15-59 months old, RSV seronegative children 6-24 months, and 1-2-month-old infants.
T215 131907-132004 Sentence denotes After a 10 5 initial dose, only 1/15 adults and 1/10 seropositive children had recoverable virus.
T216 132005-132076 Sentence denotes Of those with recoverable virus, the titer was quite low (1.6 log 10 ).
T217 132077-132235 Sentence denotes Seronegative children shed virus in nasal secretions with a peak viral titer of 2-4 log 10 ; most of the seronegative children ceased shedding within 12 days.
T218 132236-132367 Sentence denotes An alternative vaccine, the 248/404/1030/ SH virus was also tested and found to have lower rate of infection and titer of shedding.
T219 132368-132540 Sentence denotes Additional testing with these attenuated strains showed that increasing the initial vaccine inoculum titer does not substantially increase viral shedding or immunogenicity.
T220 132541-132687 Sentence denotes Finally, studies in children less than 3 months old showed a comparable level of viral shedding in the presence or absence of maternal antibodies.
T221 132688-132814 Sentence denotes The young infants had minimal antibody responses, although there were detectable serum levels of IgG and IgA to the G protein.
T222 132815-132925 Sentence denotes Mucosal antibodies were produced but at far lower levels than are seen in children older than 3 months of age.
T223 132926-133111 Sentence denotes A second dose of vaccine, the response to which can be used as a surrogate for reinfection, resulted in rare shedding of the virus and no evidence of enhanced RSV illness once infected.
T224 133112-133217 Sentence denotes These findings suggest that the vaccine may be protective without detectable increases in antibody level.
T225 133218-133479 Sentence denotes Finally, a NS-2 protein deleted 248/404 virus, a change that may make the virus more susceptible to interferon, has been found to have markedly reduced viral shedding, particularly in seronegative children, when compared to the other attenuated vaccine strains.
T226 133480-133672 Sentence denotes Although the study of these live-attenuated vaccines against RSV have given limited information about efficacy, they have given significant data to support continued develop of these vaccines.
T227 133673-133751 Sentence denotes Parainfluenza virus type 3 is a frequent cause of infection in young children.
T228 133752-134049 Sentence denotes One study found that 100% of children 0-12 years of age had experienced PIV3 infections and that ∼60% of children age 13-24 months and ∼35% of children age 25-36 months were later reinfected with the same strain, suggesting incomplete protection following primary infection (Glezen et al., 1984) .
T229 134050-134364 Sentence denotes Two different PIV3 vaccines are currently under development with the goal of preventing PIV-associated lower respiratory tract illness in those at risk: a live-attenuated bovine vaccine, which is being developed by MedImmune and NIH, and a cp45-based vaccine that is being developed cooperatively by Wyeth and NIH.
T230 134365-134585 Sentence denotes Although bovine PIV3 was well tolerated when used to vaccinate infants and children, only 70% of vaccinated children developed a four-fold rise in antibody titer, far less than would be seen with natural HPIV3 infection.
T231 134586-134756 Sentence denotes The reciprocal mean pre-and post-vaccine HAI titers to HPIV3 test antigen were 2 and 21, respectively, in BPIV3 vaccinees and 4 and 104, respectively, in hPIV3 vaccinees.
T232 134757-134934 Sentence denotes To determine which components of the BPIV3 were responsible for attention, reverse genetics were used to create an array of hPIV-3 variants with single bovine gene replacements.
T233 134935-135072 Sentence denotes All of the recombinant strains resulted in improved antibody response and afforded protection against hPIV3 relative to BPIV3 in monkeys.
T234 135073-135223 Sentence denotes Two chimeric viruses, rHPIV3-N B and rBPIV3-F H -HN H are felt to be the strongest candidates and plans are being made to test these viruses in human.
T235 135224-135527 Sentence denotes Additional potential uses of these recombinant PIV-3 viruses are as vectors to express PIV-1 and RSV F and G proteins, measles H protein, or surface glycoproteins of other respiratory viruses Durbin et al., 2000; Schmidt et al., 2000 Schmidt et al., , 2002 Skiadopoulos et al., 2001; Tao et al., 2000) .
T236 135528-135639 Sentence denotes Another attenuated virus that is being developed for PIV3 vaccines is the cp45 HPIV3 virus grown in Vero cells.
T237 135640-135799 Sentence denotes Serial passage at low temperatures in AGMK has resulted in a virus that is cold-adapted, temperature-sensitive, and attenuated in human and non-human primates.
T238 135800-135951 Sentence denotes As a result, the virus does not grow well at temperatures below 37 • C, a characteristic that theoretically limits its replication to the upper airway.
T239 135952-136140 Sentence denotes In phase 1 studies in adults and seropositive children 1-59 months, intranasal inoculation of 6 log 10 pfu resulted in infection in only 10% of adults and 12% of the seropositive children.
T240 136141-136237 Sentence denotes This suggests that prior natural HPIV3 infection limits the infectiousness of the vaccine virus.
T241 136238-136360 Sentence denotes In a phase 2 study of seronegative 6-24-month children given either 4 or 5 log 10 pfu, 82-100% were successfully infected.
T242 136361-136440 Sentence denotes Of those infected, the mean peak titer of shed virus was 2.2-3.3 log 10 pfu/ml.
T243 136441-136662 Sentence denotes In these studies, the vaccine was well tolerated without significant adverse effects, although a small number of URIs and an increased number of otitis media episodes were observed in the phase I but not phase II studies.
T244 136663-136793 Sentence denotes Next, a two-dose study in 1-2-month-old infants was conducted, with the second dose being used as a surrogate challenge infection.
T245 136794-136943 Sentence denotes The first dose of vaccine was well tolerated; similar frequencies of fever, congestion, LRI, and OM occurred in vaccinated and unvaccinated children.
T246 136944-137079 Sentence denotes When children were revaccinated a month after their first exposure, there was much less shedding of vaccine virus with the second dose.
T247 137080-137233 Sentence denotes In patients who received their second dose 3 months after the first, virus shedding was detected with greater frequency than after the 1-month challenge.
T248 137234-137369 Sentence denotes Vaccination resulted in a significant rise in serum IgA anti-HN in 84% of children but did not result in significant HAI titer changes.
T249 137370-137458 Sentence denotes Five children had temperature-sensitive intermediate viruses recovered during follow-up.
T250 137459-137729 Sentence denotes All five formed plaques at 39 • C, represented a small fraction (1%) of the total viral population, presented at the peak of viral shedding and were cleared at the same rate as fully temperature-sensitive viruses, and were not associated with changes in clinical status.
T251 137730-137884 Sentence denotes From these studies, it is clear that the cp45 HPIV3 vaccine is well-tolerated and immunogenic in infants and children but uncommonly may partially revert.
T252 137885-137990 Sentence denotes Multiple doses will be needed in infancy and the interval between doses should not be more than 2 months.
T253 137991-138276 Sentence denotes As a result of these positive findings, an RSV-A cpts 248/404 vaccine was tested alone and in combination with the HPIV-3 cp45 vaccine in a randomized, double-blind study in 6-18-month-old healthy children dually seronegative to RSV (neutralizing antibody < 1:40) and PIV3 (HAI < 1:8).
T254 138277-138398 Sentence denotes Children were given either RSV, HPIV3, both, or placebo vaccines containing 1 × 10 5 pfu of each vaccine virus in 0.5 ml.
T255 138399-138534 Sentence denotes Fever occurred in 17, 8, 33, and 44% and otitis media in 33, 8, 33 , and 11% of the RSV, HPIV3, both, and placebo groups, respectively.
T256 138535-138611 Sentence denotes All four children with a fever above 38 • C were shedding both RSV and PIV3.
T257 138612-138801 Sentence denotes The percent infected was 92% for both RSV and PIV3 when used as the sole vaccine, but in those given the combined vaccine, 90% were infected with RSV while only 76% were infected with PIV3.
T258 138802-138889 Sentence denotes The combined vaccine induced lower titers of PIV3 antibody than cp45 virus given alone.
T259 138890-138952 Sentence denotes The antibody responses to the vaccines are listed in Table 5 .
T260 138953-139129 Sentence denotes In conclusion, the majority of children responded to both RSV and PIV3 in the combination vaccine, but interference between the two virus vaccines was evident in some children.
T261 139130-139260 Sentence denotes Further studies are planned to investigate the incidence of OM and the utility of two doses of both PIV3 and combination vaccines.
T262 139261-139473 Sentence denotes A live-attenuated vaccine (LIV) that was created using genetic reassortment of epidemic strains into three attenuated master strains (A/Leningrad/134/17/57 (H2N2), A/Leningrad/134/47/57 (H2N1), and B/USSR/60/69).
T263 139474-139553 Sentence denotes The current trivalent vaccine contains A/H1N1, A/H3N2, and B influenza strains.
T264 139554-139671 Sentence denotes The intranasally administered vaccine has been shown previously to be safe and well tolerated in adults and children.
T265 139672-139774 Sentence denotes Children typically receive two doses of the vaccine, 2 weeks apart, while adults get a single vaccine.
T266 139775-139959 Sentence denotes To investigate the response to this vaccine in children age 3-6 years old, an open-label study enrolled 369 children over two influenza seasons to receive the intranasal trivalent LIV.
T267 139960-140044 Sentence denotes Patients were interviewed after 6 months to assess for acute respiratory infections.
T268 140045-140166 Sentence denotes The vaccine was well tolerated with children uncommonly developing fever (0.9%), headache (0.3%), and sore throat (0.9%).
T269 140167-140404 Sentence denotes There was a four-fold rise in serum influenza-specific antibodies in 58-59, 58-61, and 30-39% of children to H1N1, H3N2, and B antigens, respectively and four-fold rise in IgA titers in 44-60, 42-53, and 22-44% of children, respectively.
T270 140405-140579 Sentence denotes There was a 8.8-fold reduction in influenza infections and a 2.2-fold reduction in all acute respiratory infections among vaccinated children compared to historical controls.
T271 140580-140691 Sentence denotes Likewise, the vaccine was 60% effective in preventing otitis media and 100% effective in preventing bronchitis.
T272 140692-140811 Sentence denotes This LIV that is currently used in Russian appears to be safe, well tolerated, and effective in children 3-6 years old.
T273 140812-141129 Sentence denotes Kong/1073/99 H9N2 subunit and whole virus vaccine in healthy adults (Maria Zambon, Public Health Laboratory, London, UK) Following a highly pathogenic avian influenza A H5N1 outbreak in Hong Kong in 1997, enhanced surveillance identified widespread prevalence of H9N2 virus in Asian swine herds and live-bird markets.
T274 141130-141209 Sentence denotes In 1999, two children developed influenza caused by a H9N2 strain in Hong Kong.
T275 141210-141370 Sentence denotes The H9N2 virus exhibits receptor-binding properties consistent with other human influenza viruses suggesting that this virus could potentially cause a pandemic.
T276 141371-141430 Sentence denotes An inactivated subunit H9N2 vaccine was protective in mice.
T277 141431-141602 Sentence denotes Since whole virus vaccines may be more immunogenic in naïve patients, whole virion (WV) and subunit (SV) vaccines were prepared using influenza A/Hong Kong/0173/99 (H9N2).
T278 141603-141708 Sentence denotes This vaccine was used in an observer-blind, dose-ranging study in 60 healthy adults aged 18-60 years old.
T279 141709-141822 Sentence denotes Volunteers received either vaccine containing 7.5, 15, or 30 g H9 HA at the time of enrollment and 21 days later.
T280 141823-141977 Sentence denotes Antibody response at days 0, 14, 21, and 42 was detected by hemagglutination inhibition (HI), microneutralization (MN), and single radial hemolysis (SRH).
T281 141978-142153 Sentence denotes Both vaccines were well tolerated, although the WV was associated with more frequent pain (42% versus 10%), nausea (15% versus 0%), and arthalgias (15% versus 3%) than the SV.
T282 142154-142327 Sentence denotes There were no differences in seroconversion between WV and SV at day 42, although seroconversion was more likely in patients who had received 30 g, particularly with the WV.
T283 142328-142439 Sentence denotes Patients younger than 32 years were less likely to convert after the first dose than following the second dose.
T284 142440-142536 Sentence denotes This suggests that a booster dose will be required for all naïve patients younger than 32 years.
T285 142537-142541 Sentence denotes 9.1.
T286 142542-142564 Sentence denotes Treating common colds:
T287 142565-142724 Sentence denotes Echinacea and beyond (Ronald Turner, University of Virginia, Charlottesville, VA) Echinacea is one of the most widely used herbal remedies for the common cold.
T288 142725-142838 Sentence denotes Despite its frequent use and the echinacoside, in addition to polysaccharides and alkamides present in the plant.
T289 142839-143009 Sentence denotes Immunostimulatory activity has been ascribed to the polysaccharides, while anti-inflammatory activity has been ascribed to the caffeic acid derivatives and the alkamides.
T290 143010-143089 Sentence denotes The biologically active constituents differ among the three species (Table 6) .
T291 143090-143228 Sentence denotes Unfortunately, the content of each biologically active component in the plant is dependent on the harvest time and part of the plant used.
T292 143229-143357 Sentence denotes Available preparations use different species, different parts of the plant, and plants from different regions and harvest times.
T293 143358-143507 Sentence denotes As a result, there is significant variability in the content of cichoric acid and alkamides in different brands and different lots of the same brand.
T294 143508-143704 Sentence denotes Studies of these agents are difficult because it is unclear what are the optimal dose and formulation of Echinacea to use and what are the relative absorption and distribution of each preparation.
T295 143705-143871 Sentence denotes To prospectively study Echinacea for the common cold, a standardized Echinacea extract, containing 0.16% cichoric acid and no echinacosides or alkamides was prepared.
T296 143872-143989 Sentence denotes Sixty-three patients ingested the active agent and 54 placebo for 2 weeks prior to challenge with rhinovirus type 23.
T297 143990-144115 Sentence denotes Rhinovirus infection occurred in 44% of Echinacea-treated and 57% of placebo-treated volunteers, an insignificant difference.
T298 144116-144185 Sentence denotes Likewise, there was no difference in symptoms between the two groups.
T299 144186-144275 Sentence denotes This preparation of Echinacea did not prevent or lessen the severity of rhinovirus colds.
T300 144276-144472 Sentence denotes In summary, activities of Echinacea extracts are unclear, the products are not standardized, and the currently available studies provide limited data that can be generalized to different products.
T301 144473-144586 Sentence denotes Components of the pathogenesis of rhinoviral colds need to be considered as targets for therapeutic intervention.
T302 144587-144781 Sentence denotes Virus infection of the nasal epithelium results in cellular oxidative stress and in a non-specific host inflammatory response that results in sore throat and vasodilation and serum transudation.
T303 144782-144846 Sentence denotes These events in turn result in nasal obstruction and rhinorrhea.
T304 144847-144918 Sentence denotes Progression of the virus to the lower respiratory tract may also occur.
T305 144919-145002 Sentence denotes One step amenable to modification may be the oxidative stress induced by the virus.
T306 145003-145143 Sentence denotes In A549 cell lines exposed to RSV, exposure to the antioxidant DMSO resulted in reduced IL-8 production in a concentration-dependent manner.
T307 145144-145313 Sentence denotes To investigate the role of oxidative stress in rhinovirus infections, carbonyl and DCFDA stains were used to document oxidant stress in cell lines exposed to rhinovirus.
T308 145314-145419 Sentence denotes Next, N-acetylcysteine (NAC), another potent anti-oxidant, was used in BEAS-2B cell lines exposed to hRV.
T309 145420-145527 Sentence denotes NAC exposure was associated with significant decreases in NFB and IL-8 in a concentration-dependent manner.
T310 145528-145698 Sentence denotes To further elucidate the role of various agents in the management of rhinoviral colds, anti-ICAM antibodies were studied to determine their impact on cytokine production.
T311 145699-145961 Sentence denotes Anti-ICAM exposure of cell culture was associated with a significant decrease in viral titer, but there was no difference in IL-8 production in wells exposed and unexposed to anti-ICAM, suggesting that elaboration of IL-8 is independent of viral binding to ICAM.
T312 145962-146182 Sentence denotes Several oxidase inhibitors, including diphenylene iodonium (DPI), ibuprofen, allopurinol, and rotenone were tested in a similar cell culture system to determine their impact on rhinoviral replication and IL-8 production.
T313 146183-146233 Sentence denotes Only DPI appeared to reduce viral titers and IL-8.
T314 146234-146364 Sentence denotes Additional testing found that DPI was successful in reducing IL-8 production in response to RSV and coronavirus infection as well.
T315 146365-146539 Sentence denotes Since DPI is a specific inhibitor of NADPH-oxidase, additional studies were conducted to determine the components of the oxidase most responsible for the reduction of titers.
T316 146540-146661 Sentence denotes First, CGD skin fibroblasts, which are deficient in the gp91-phox component of the NAPDH-oxidase, were infected with hRV.
T317 146662-146835 Sentence denotes There was no difference in viral titer or IL-8 production as compared to normal skin fibroblasts, while fibroblasts that were p47-phox deficient had reduced IL-8 production.
T318 146836-146933 Sentence denotes Lastly, p47-phox antisense molecules were used to assess the role of p47-phox in IL-8 production.
T319 146934-147010 Sentence denotes In the presences of antisense constructs, IL-8 levels were markedly reduced.
T320 147011-147149 Sentence denotes Amplification of MRC-5 and BEAS-2b cell lines to look for specific NADPH-like oxidases found NOX-4 to be present in all tested cell lines.
T321 147150-147310 Sentence denotes Future studies will be directed at specific inhibitors of NOX-4 to assess their ability to limit the viral titer and symptoms as the result of these infections.
T322 147311-147455 Sentence denotes Over 90% of human rhinovirus (HRV) use ICAM-1 as the receptor to attach to respiratory epithelium (Greve et al., 1989; Tomassini et al., 1989) .
T323 147456-147565 Sentence denotes In the past, two different compounds have been developed to bind to either ICAM-1 or to block ICAM-1 binding.
T324 147566-147650 Sentence denotes Soluble ICAM-1 was found to prevent and treat experimental HRV infections in adults.
T325 147651-147828 Sentence denotes Unfortunately, it had to be given in high doses six times a day to be effective, and has not been pursued for clinical development (Huguenel et al., 1997; Turner et al., 1999) .
T326 147829-148026 Sentence denotes A murine monoclonal antibody, termed RRMA, which blocked ICAM-1, was found to be safe in humans and partially effective in preventing experimental hRV infection in one trial (Hayden et al., 1988) .
T327 148027-148144 Sentence denotes Our in vitro investigation of RRMA showed that its kinetics with respect to receptor interactions were not favorable.
T328 148145-148314 Sentence denotes In particular, the k on was 2.4 × 10 −3 and (17-47) × 10 −3 s −1 for HRV and RRMA, respectively, whereas the k off was 1.67 × 10 −3 and 1.80 × 10 −3 s −1 , respectively.
T329 148315-148407 Sentence denotes These kinetics showed that RRMA avidity was insufficient to compete effectively against HRV.
T330 148408-148544 Sentence denotes Since multivalency of antibodies increased binding affinity by decreasing k off , we constructed a tetrameric recombinant RRMA antibody.
T331 148545-148702 Sentence denotes Each of the four arms of the molecule, called CFY196 (ColdSol TM ), has three domains: a humanized RRMA Fab, a flexible linker, and a tetramerization domain.
T332 148703-148829 Sentence denotes The gene for this antibody construct was used to transform E. coli to produce a homogenous tetramer after ultracentrifugation.
T333 148830-148969 Sentence denotes Binding kinetic studies were done on cells with CFY196 and the k off was 1.53×10 −6 s −1 , and the binding half-life was greater than 80 h.
T334 148970-149156 Sentence denotes In vitro experiments using HeLa and primary human lung cells has demonstrated that nanomolar concentrations of the drug are effective at preventing HRV replication and cytopathic effect.
T335 149157-149253 Sentence denotes The molecule is stable for over 3 months at 37 • C and for over a week in nasal mucus at 37 • C.
T336 149254-149365 Sentence denotes As a result of these promising studies, the compound is being developed as an intranasal anti-rhinovirus agent.
T337 149366-149459 Sentence denotes Additional preclinical studies are ongoing and plans for clinical trials are being developed.
T1 149460-149653 Sentence denotes Cyanovirin-N (CV-N) is a 101 amino acid protein isolated from the cyanobacterium Nostoc ellipsosporum with antiviral activity against the human immunodeficiency virus (Chang and Bewley, 2002) .
T2 149654-149840 Sentence denotes CV-N is active in vitro against influenza but has little or no activity against adenovirus, parainfluenza virus, respiratory syncytial virus, enterovirus, rhinovirus, or coxsackie virus.
T3 149841-149960 Sentence denotes Inhibition is strain-dependent and several strains of influenza A (H1N1) and influenza B were highly resistant to CV-N.
T4 149961-150097 Sentence denotes Much less CV-N binds to resistant A/PR/8 than sensitive A/Sydney virus, consistent with the antiviral activity observed in cell culture.
T5 150098-150188 Sentence denotes These studies led to binding experiments using purified HA from an A/Beijing (H1N1) virus.
T6 150189-150340 Sentence denotes Europium-labeled CV-N bound to viral HA that contained high mannose residues, and exogenous oligomannose-8 could inhibit the binding of CV-N to the HA.
T7 150341-150535 Sentence denotes In virucidal assays, in which pools of stock virus were incubated with CV-N for 30 min prior to virus titration on cells, found that A/NWS and A/PR/8 viruses were resistant to virucidal effects.
T8 150536-150681 Sentence denotes Mouse-adapted viruses (A/Shangdong, A/Duck, A/Gull, and B/Hong Kong) were much more resistant to the compound than cell-culture passaged viruses.
T9 150682-150886 Sentence denotes The A276T change found in mouse-adapted A/Shangdong resulted in a loss of the high mannose glycosylation site at that position on the viral hemagglutinin, thus is responsible for viral resistance to CV-N.
T10 150887-151099 Sentence denotes In conclusion, interaction between CV-N and the influenza hemagglutinin is carbohydrate-mediated, but CV-N discriminately binds only the glycoproteins that express high-mannose (Man-8 and Man-9) oligosaccharides.
T11 151100-151196 Sentence denotes Virus resistance to CV-N correlated with loss of glycosylation sites in the viral hemagglutinin.
T12 151197-151201 Sentence denotes 9.4.
T13 151202-151541 Sentence denotes Ruprintrivir (AG7088) (Amy Patick, Pfizer Global Research and Development, La Jolla, CA) In the search for drugs active against picornaviruses, the 3C protease was identified as a important target because it lacks similarity to human proteases, is essential for replication, and has a highly conserved active site (Matthews et al., 1994) .
T14 151542-151787 Sentence denotes Ruprintrivir (AG7088) is currently being investigated as a highly potent (mean EC90 for 48 tested serotypes = 82 nM), peptidomimetic, irreversible 3C protease inhibitor (Dragovich et al., 1998a (Dragovich et al., ,b, 1999a Patick et al., 1999) .
T15 151788-151988 Sentence denotes Phase I trials demonstrated that ruprintrivir had minimal treatment-related adverse nasal effects and that there were high nasal mucus concentrations of ruprintrivir 12 h after intranasal inoculation.
T16 151989-152348 Sentence denotes In phase II studies, in which volunteers were inoculated with either HRV39 or Hanks, subjects were randomized to receive intranasal ruprintrivir (8 mg) or placebo sprays as prophylaxis (2 or 5 times daily (2 times per day or 5 times per day) for 5 days) starting 6 h before infection or as treatment (5 times per day for 4 days) starting 24 h after infection.
T17 152349-152453 Sentence denotes Patients who received active drug as treatment had lower symptom scores beginning 1 day after infection.
T18 152454-152541 Sentence denotes The treated patients also had lower viral titers by culture and RT-PCR at days 2 and 3.
T19 152542-152666 Sentence denotes Prophylaxis also reduced viral shedding and mean AUC of virus titer but did not significantly reduce the frequency of colds.
T20 152667-152815 Sentence denotes These studies established that intranasal ruprintrivir suspension has significant antiviral activity in experimentally induced rhinovirus infection.
T21 152816-152994 Sentence denotes A phase II treatment trial of patients with natural colds with symptoms of less than 36 h was conducted in which patients received ruprintrivir BID or TID or placebo for 10 days.
T22 152995-153291 Sentence denotes Unfortunately, only 29% of volunteers had a picornavirus documented by a first generation RT-PCR test and the study found no difference in outcomes between treated and untreated patients, except for those picornavirus-infected patients who entered the study within the first 24 h of symptomology.
T23 153292-153380 Sentence denotes As a result of these results the drug was reformulated to its current 2% nasal solution.
T24 153381-153483 Sentence denotes Phase I trials showed the drug to be safe and well tolerated; phase II studies are currently underway.
T25 153484-153648 Sentence denotes Pleconaril is an orally bioavailable capsid-inhibitor that blocks uncoating and attachment of picornaviruses by binding into a hydrophobic pocket within the capsid.
T26 153649-153699 Sentence denotes It has broad activity against most picornaviruses.
T27 153700-153831 Sentence denotes Two pivotal phase three clinical trials were conducted from August to November 2000 at 197 centers in the United States and Canada.
T28 153832-153948 Sentence denotes Patients that had an afebrile cold with symptoms of less than 24 h with moderate to severe rhinorrhea were enrolled.
T29 153949-154017 Sentence denotes Patients received pleconaril 400 mg BID for 5 days after enrollment.
T30 154018-154116 Sentence denotes A total of 2096 patients were enrolled in both trials with 65% having a rhinovirus cold by RT-PCR.
T31 154117-154239 Sentence denotes Pleconaril treatment was associated with a reduction in illness duration of 0.6 and 1.5 days in each study, respectively .
T32 154240-154307 Sentence denotes Illness severity was reduced by 19% and differences began on day 2.
T33 154308-154435 Sentence denotes Nights of sleep disturbance was reduced by 33%, cold medications were reduced by 19%, and viral shedding was reduced by 2 days.
T34 154436-154594 Sentence denotes Resistant virus was isolated post-treatment in some subjects; 2.7% showed no susceptibility to pleconaril and 10.7% had a 10-fold reduction in susceptibility.
T35 154595-154672 Sentence denotes Amino acid changes from resistant variants mapped to the drug-binding pocket.
T36 154673-154784 Sentence denotes There was no difference in illness course in patients shedding virus with reduced susceptibility to pleconaril.
T37 154785-154879 Sentence denotes Mild to moderate nausea was more common among patients who received pleconaril (6% versus 4%).
T38 154880-154957 Sentence denotes There were no clinically significant effects on laboratory safety parameters.
T39 154958-155139 Sentence denotes Three-and-a-half percent of women on oral contraceptives developed menstrual disorders after using pleconaril, although there was no increased incidence of pregnancy in these women.
T40 155140-155298 Sentence denotes In conclusion, pleconaril was found to be the first antiviral drug effective in reducing the duration and severity of rhinoviral colds and was well tolerated.
T41 155299-155450 Sentence denotes A 6-week prophylaxis study was then launched which enrolled 1069 adults who were treated with pleconaril 400 mg BID, 400 mg QD, or placebo for 6 weeks.
T42 155451-155565 Sentence denotes The incidence of picornavirus-confirmed colds was 8, 9, and 16% for pleconaril BID, QD, and placebo, respectively.
T43 155566-155760 Sentence denotes Treated patients also had a corresponding approximately 50% less functional impairment, sleep disturbance, and missed days from school or work when they were receiving pleconaril versus placebo.
T44 155761-155966 Sentence denotes The safety profile of pleconaril in this study was similar to the treatment study, although there was a two-to three-fold increased rate of menstrual disorders in pleconaril recipients compared to placebo.
T45 155967-156034 Sentence denotes The increase in events began during the second week of prophylaxis.
T46 156035-156192 Sentence denotes In response to these findings, additional testing was done in healthy volunteers that documented increases in CYP3A activity after 5 days of oral pleconaril.
T47 156193-156333 Sentence denotes This increased CYP3A activity was associated with a 35% decrease in the AUC of ethinyl estradiol and a 28% decrease in the AUC of midazolam.
T48 156334-156434 Sentence denotes The CYP3A activity returned to normal levels 7-14 days after cessation of pleconaril administration.
T49 156435-156611 Sentence denotes It is interesting to note that there was no evidence that pleconaril had an impact on the cytochrome P450 system in preliminary studies in rat, dog, or human hepatocyte assays.
T50 156612-156934 Sentence denotes Although the FDA Advisory Panel that reviewed the application for pleconaril agreed that it was efficacious, there were concerns about drug interactions, development of antiviral resistance, its probable over-the-counter-like use if approved, and the generalizability of the available efficacy data to higher risk persons.
T51 156935-157021 Sentence denotes As a result of these concerns, the FDA deemed pleconaril not approvable in June, 2002.
T52 157022-157279 Sentence denotes Currently, pleconaril is still available as part of a compassionate use program, and ViroPharma is pursuing approval of the oral dosage form for life threatening enteroviral infections, including chronic meningoencephalitis, myocaridits and neonatal sepsis.
T53 157280-157517 Sentence denotes In addition, there is hope to reformulate pleconaril for intranasal delivery which will hopefully allow delivery the drug to the site of infection without allowing systemic absorption with its resultant risk of inducing the CYP3A system.
T54 157518-157787 Sentence denotes Currently, pharmaceutical interest in compounds with activity against respiratory viruses is limited because of a focus on chronic disease, unattractive commercial opportunities, and the high standard required to obtain FDA approval for non-life-threatening conditions.
T55 157788-157959 Sentence denotes Despite these limitations, colds are the most common reason for seeing a physician and result in nearly 75% of patients taking over-the-counter medications or antibiotics.
T56 157960-158168 Sentence denotes Antiviral agents with activity against rhinoviruses are needed and may have additional benefits such as reducing the indiscriminant use of antibiotics with its resultant induction of antimicrobial resistance.
T57 158169-158391 Sentence denotes As has been described earlier, RSV is an important pathogen in infants, the elderly, and the immunocompromised and is responsible for over 100,000 excess hospitalizations and US$ 2 billion in direct medical costs annually.
T58 158392-158481 Sentence denotes Several compounds are under development that may be effective in treating RSV infections.
T59 158482-158608 Sentence denotes One such class of compounds inhibits RSV replication by affecting functions associated with the viral fusion (F) glycoprotein:
T60 158609-159018 Sentence denotes Janssen's R170591, a topically applied compound with a reported EC 50 against RSV of <1 nM, is in preclinical study; Bristol-Myers Squibb's BMS-433771, an orally bioavailable compound with a reported EC 50 against RSV of 10 nM, is in preclinical study; and ViroPharma's VP14637, a compound delivered by small particle aerosol (SPA) inhalation with an EC 50 against RSV of <1 nM, is completing phase 1 studies.
T61 159019-159090 Sentence denotes VP14637 is broadly active in cell culture against RSV-A and -B viruses.
T62 159091-159238 Sentence denotes In vitro time of drug addition studies suggest that the drug has to be present early after infection to affect a single round of virus replication.
T63 159239-159362 Sentence denotes In cotton rats, prophylactic BID dosing of VP14637 by SPA for 3 days resulted in significant reduction in lung virus titer.
T64 159363-159435 Sentence denotes Forty-six independent escape variants were selected to VP14637 in vitro.
T65 159436-159509 Sentence denotes All 46 variants had amino acid changes that mapped to the F glycoprotein.
T66 159510-159730 Sentence denotes Modeling of these changes on the crystal structure of the Newcastle Disease Virus metastable form of the F glycoprotein indicated that the amino acid changes mapped to the head domain of the protein (Chen et al., 2001) .
T67 159731-159913 Sentence denotes Preclinical toxicology studies in adult rats, adult dogs, and neonatal dogs in which the animals were given VP14637 for 2 weeks by SPA inhalation resulted in no histological changes.
T68 159914-159962 Sentence denotes Genotoxicity studies have been negative to date.
T69 159963-160043 Sentence denotes An IND for the new drug was filed and approved during the third quarter of 2001.
T70 160044-160481 Sentence denotes A phase 1 study has recently been completed, although data analysis is ongoing, and other studies are in the planning stages currently. (Mikhail Matrosovich, Philipps University, Marburg, Germany) Influenza virus can develop resistance to neuraminidase inhibitors via changes in the neuraminidase (NA), which results in decreased drug binding, or in the hemagglutinin (HA), which results in lowered HA affinity for its cellular receptor.
T71 160482-160595 Sentence denotes To detect both types of resistance, and perhaps novel ones, a virus inhibition assay in cell culture is required.
T72 160596-160925 Sentence denotes Unfortunately, current cell culture assays are not predictive of influenza virus sensitivity to neuraminidase inhibitors (NAI) in enzyme inhibition assays or in vivo (McKimm-Breschkin, 2000; Tisdale, 2000) NAI sensitive strains may appear to be resistant, while NAI resistant mutants may show susceptibility with current methods.
T73 160926-161057 Sentence denotes One reason for this limitation is that laboratory cell lines do not model influenza virus receptors in the human airway epithelium.
T74 161058-161205 Sentence denotes Human airway epithelium has mostly two to six linked sialic acids with high receptor density, and influenza virus infection is highly NA dependent.
T75 161206-161427 Sentence denotes Laboratory cells including commonly used Madin Darby canine kidney (MDCK) cells, on the other hand, have mostly two to three linked sialic acids with low receptor density, so that influenza infection is less NA dependent.
T76 161428-161581 Sentence denotes To create a cell line that better reflects normal human airway epithelium, MDCK cells were transfected with ␤-galactoside a2,6-sialyltransferase (SIAT1).
T77 161582-161643 Sentence denotes SIAT1 attaches sialic acid at the 6-position of Gal1-4GlcNac.
T78 161644-161783 Sentence denotes The transfection was achieved using a pIREsneo vector with the SIAT1 gene that resulted in overexpression of SIAT1 and neomycin resistance.
T79 161784-161940 Sentence denotes Preliminary studies demonstrated that the transfection was stable and resulted in substantially increased two to six linked sialic acid on the cell surface.
T80 161941-162035 Sentence denotes The cells also had increased binding of human influenza virus compared to standard MDCK cells.
T81 162036-162249 Sentence denotes In cell culture studies of MDCK and SIAT1-transfected MDCK cells, A/Sydney/5/97 (H3N2), A/Memphis/14/96 (H1N1), and B/Memphis/25/99 were more sensitive to the NAI in the SIAT-transfected cells than the MDCK cells.
T82 162250-162542 Sentence denotes When wild type A/Wuhan/359/95-like (H3N2), that was isolated before initiation of treatment with a neuraminidase inhibitor, was tested in parallel with a post-treatment E119V NA mutant, the SIAT cells were able to differentiate susceptible from resistant virus, while the MDCK cells were not.
T83 162543-162614 Sentence denotes Similar results were noted with R292K, N129K, E156K, and Q226R mutants.
T84 162615-162715 Sentence denotes The drug susceptibility patterns correlated with the affinity for 6-linked receptors of the viruses.
T85 162716-162914 Sentence denotes In summary, the SIAT-transfected MDCK cells have acquired genes that are stably expressed and result in increased expression of 6-linked sialic acids and reduced expression of 3-linked sialic acids.
T86 162915-163058 Sentence denotes Human influenza viruses have im-proved affinity for these cells and greater sensitivity to NAIs in cell cultures using these transformed cells.
T87 163059-163230 Sentence denotes The sensitivity of viruses to oseltamivir carboxylate in MDCK-SIAT1 cells was consistent with their sensitivity in NA enzyme assays and with HA receptor-binding phenotype.
T88 163231-163344 Sentence denotes The SIAT1 transfected MDCK cells appear to be a promising system for testing influenza virus sensitivity to NAIs.
T89 163345-163349 Sentence denotes 9.8.
T90 163350-163749 Sentence denotes Sequence variation and susceptibility of influenza virus clinical isolates to zanamivir and oseltamivir prior to their introduction into clinical practice (Jenny McKimm-Breschkin, CSIRO Health Sciences and Nutrition, Parkville, Australia) Zanamivir and oseltamivir, which specifically inhibit the neuraminidases (NA) of influenza A and B viruses, were introduced into clinical practice in 1999-2000.
T91 163750-164041 Sentence denotes NA mutations detected in clinical isolates, which confer resistance to the available neuraminidase inhibitors (NAI), include E119Vand H274Y, which confer resistance to oseltamivir only, and R292K and R152K, which confer resistance to both oseltamivir and zanamivir (Wetherall et al., 2003) .
T92 164042-164284 Sentence denotes The Neuraminidase Inhibitor Susceptibility Network (NISN) was established to monitor the potential development of resistance in clinical isolates with the widespread introduction of NA inhibitors into clinical practice (Zambon et al., 2001) .
T93 164285-164499 Sentence denotes To determine baseline sensitivities of isolates prior to the introduction of drugs, 1054 isolates were collected through the WHO Influenza Surveillance Network from different regions of the world from 1996 to 1999.
T94 164500-164572 Sentence denotes Sensitivities of the NAs were determined using enzyme inhibition assays.
T95 164573-164802 Sentence denotes Preliminary testing showed that the MUNANA fluorescent assay (Potier et al., 1979) and NA-STAR chemiluminescent assay (Buxton et al., 2000) gave similar results, although the NA-STAR method was preferred when NA activity was low.
T96 164803-164863 Sentence denotes There were very few discordant pairs using these two assays.
T97 164864-165062 Sentence denotes Using these two systems, influenza A/N1 and influenza B viruses tended to be slightly more sensitive to zanamivir, while influenza A/N2 subtypes tended to be slightly more sensitive to oseltamivir .
T98 165063-165233 Sentence denotes Drug susceptibilities of known zanamivir and oseltamivir-resistant mutants fell outside the 95% confidence limits of all natural isolates and were easily distinguishable.
T99 165234-165386 Sentence denotes The NAs of approximately 100 isolates, both control viruses and clinical isolates including those lying above the 95% confidence limits, were sequenced.
T100 165387-165453 Sentence denotes The sequences revealed variation in previously conserved residues.
T101 165454-165539 Sentence denotes One of 10 N1, 7 of 38 N2, and 1 of 42 influenza B isolates had D151 to N, G, E, or V.
T102 165540-165641 Sentence denotes Originally the D151 was thought to be the proton donor for the catalytic reaction mediated by the NA.
T103 165642-165748 Sentence denotes Since none of these isolates showed decreased enzyme activity, the D151 likely does not provide this role.
T104 165749-165961 Sentence denotes In addition to changes in non-conserved residues associated with natural antigen drift, there was also a change in the conserved residue T225I in 1 B virus, and co-evolution of I203L and E375G in 5/42 B isolates.
T105 165962-166124 Sentence denotes Molecular modeling shows these latter two residues lie on opposite sides of the NA head and hence are more likely to be random rather than compensatory mutations.
T106 166125-166246 Sentence denotes Importantly, despite sequence variations, there was no naturally occurring resistance to either zanamivir or oseltamivir.
T107 166247-166251 Sentence denotes 9.9.
T108 166252-166618 Sentence denotes Effect of mutations in the hemagglutinin gene of influenza A viruses on the resistance phenotype of neuraminidase inhibitors (Guy Boivin, Laval University, Québec, Canada) Previous studies have shown that resistance to neuraminidase inhibitors (NAI) generated after in vitro passages may result in mutations in the neuraminidase (NA) and/or hemagglutinin (HA) genes.
T109 166619-166734 Sentence denotes However, the effect of HA mutations alone on the resistance phenotype remains to be confirmed in clinical isolates.
T110 166735-166925 Sentence denotes In influenza A/H1N9 the HA mutation S186F results in 10-fold reduced susceptibility to zanamivir, while S186F + K222T results in 1000-fold resistance to all known NAIs (Blick et al., 1998) .
T111 166926-167079 Sentence denotes The S186F, K222T, and both mutations were incorporated in the HA transcription plasmid using the Quick change site-directed mutagenesis kit (Stratagene).
T112 167080-167187 Sentence denotes Recombinant influenza A/WSN33 (H1N1) viruses were then generated by reverse genetics (Fodor et al., 1999) .
T113 167188-167332 Sentence denotes In the NA inhibition assay, the wild type and HA mutants had similar low IC 50 values for zanamivir (0.67-1.06 nM) and peramivir (0.18-0.26 nM).
T114 167333-167500 Sentence denotes The K222T virus had a three-to four-fold reduction in susceptibility by plaque reduction assay, while the other two mutants were no different than the wild type virus.
T115 167501-167633 Sentence denotes This data suggests that in vitro generated resistance to NAIs may not be solely attributable to HA mutations as previously reported.
T116 167634-167786 Sentence denotes In addition, the combined effects of HA and NA mutations needs to be investigated as potential mechanisms for NAI resistance (Nedyalkova et al., 2002) .
T117 167787-167974 Sentence denotes This study also documents the utility of reverse genetics to study various HA substitutions in the same genetic background and the impact of these variant HAs on antiviral susceptibility.
T118 167975-168115 Sentence denotes Two specific inhibitors of influenza A and B neuraminidase are currently available for clinical use: inhaled zanamivir and oral oseltamivir.
T119 168116-168304 Sentence denotes Two additional orally active neuraminidase inhibitors (NAI), peramivir and A-315675, are investigational, although there are no current plans to move these agents forward for clinical use.
T120 168305-168515 Sentence denotes In vitro resistance can be mediated by changes in the hemagglutinin (HA), which is strain-specific, change in neuraminidase (NA), which is both subtype-and drug-specific, both, or by creation of a defective NA.
T121 168516-168641 Sentence denotes No reliable cell culture-based assays are currently widely available for influenza virus susceptibility testing against NAIs.
T122 168642-168717 Sentence denotes Drug-selected changes in the NA are detectable by enzyme inhibition assays.
T123 168718-168888 Sentence denotes These results of these assays are affected if the reaction conditions are varied, even slightly, if there are mixtures of variants present, or if the NA has low activity.
T124 168889-169025 Sentence denotes Resistance may be defined as a 5-10-fold or greater increase in the IC 50 values compared to the virus recovered prior to drug exposure.
T125 169026-169153 Sentence denotes Sequencing of the NA or HA genes can be done to document genetic changes that may be associated with the phenotypic resistance.
T126 169154-169263 Sentence denotes Resistant variants have also been recovered in vivo from both immunocompetent and immunocompromised patients.
T127 169264-169371 Sentence denotes No zanamivir-selected substitutions in either the HA or NA have been recognized in immunocompetent persons.
T128 169372-169441 Sentence denotes No oseltamivir-selected substitutions in the HA have been recognized.
T129 169442-169589 Sentence denotes However, several oseltamivir-selected changes in the NA of influenza A viruses have been detected: N1 H274T and N2 G119V and R292K have been found.
T130 169590-169676 Sentence denotes About 1-2% of treated adults and 6% of children develop these variants during therapy.
T131 169677-169891 Sentence denotes The clinical course of patients with detectable resistant variants is not different from those with susceptible viruses Covington et al., 1999; Gubareva et al., 2001; Herlocher et al., 2002; Whitley et al., 2001) .
T132 169892-169993 Sentence denotes Immunocompromised patients have prolonged virus shedding which promotes emergence of drug resistance.
T133 169994-170117 Sentence denotes We have studied four clinical cases of immunocompromised patients who developed NAI resistant mutants have been recognized.
T134 170118-170296 Sentence denotes The first patient, which has been described elsewhere (Gubareva et al., 1998 ) was a 1.5-year-old girl with chronic myelocytic leukemia who underwent bone marrow transplantation.
T135 170297-170399 Sentence denotes She developed an influenza B virus infection that persisted until her death despite inhaled zanamivir.
T136 170400-170507 Sentence denotes During zanamivir treatment, a R292K NA mutation which conferred cross-resistance to all known NAIs (IC 50 :
T137 170508-170659 Sentence denotes 100 nM zanamivir, 1000 nM for oseltamivir, peramivir, and A-675) developed; in addition T981I, N208D, Q226E, and K325T HA mutations were noted as well.
T138 170660-170776 Sentence denotes The second patient was a 2-year-old girl with chronic myelocytic leukemia who underwent bone marrow transplantation.
T139 170777-170852 Sentence denotes She also developed an influenza B infection that continued until her death.
T140 170853-170921 Sentence denotes The patient was treated with oseltamivir and briefly with ribavirin.
T141 170922-170986 Sentence denotes Her initial isolate on therapy had E150G and E273K NA mutations.
T142 170987-171152 Sentence denotes Over time, additional D198N and D198N NA mutations developed which induced decreasing susceptibility to oseltamivir, zanamivir, and peramivir, but not A-675 (IC 50 :
T143 171153-171193 Sentence denotes 304, 15, 5.9, and 1.7 nM, respectively).
T144 171194-171308 Sentence denotes The third patient was a 23-year-old male who underwent bone marrow transplantation for acute lymphocytic leukemia.
T145 171309-171490 Sentence denotes He developed an influenza A/H1N1 infection and received intermittent therapy with amantadine, rimantadine, oseltamivir, and zanamivir and died 18 months later with detectable virus.
T146 171491-171677 Sentence denotes The initial virus available for resistance assessment, collected after several months of therapy, was resistant to the M2 inhibitors and had V27A, V28D, A30V, L36V, L21I mutations in M2.
T147 171678-171764 Sentence denotes A H274Y mutation in NA that conferred decreased susceptibility to oseltamivir (IC 50 :
T148 171765-171795 Sentence denotes 100 nM) and peramivir (IC 50 :
T149 171796-171862 Sentence denotes 10 nM) but no change in zanamivir or A-675 susceptibility (IC 50 :
T150 171863-171918 Sentence denotes 1.1 and 1.2 nM, respectively) was transiently detected.
T151 171919-172041 Sentence denotes The fourth patient was a 63-year-old female with chronic lymphocytic leukemia who developed an influenza A/H3N2 infection.
T152 172042-172260 Sentence denotes Over time, a G119V NA mutation occurred which conferred resistance to oseltamivir only and an S31N M2 mutation conferred M2 inhibitor resistance, so that a virus resistant to both M2 inhibitors and oseltamivir emerged.
T153 172261-172403 Sentence denotes From these patients, it is clear that antiviral therapy failed to control the influenza infection and that novel NA mutations were recognized.
T154 172404-172551 Sentence denotes Unlike the rapid emergence of resistance to M2 inhibitors, selection of influenza viruses with altered NA usually requires prolonged drug exposure.
T155 172552-172645 Sentence denotes Based on enzyme inhibition assays, NA mutations frequently confer resistance to a single NAI.
T156 172646-172729 Sentence denotes The mechanisms of resistance to NAIs are complex and require further investigation.
T157 172730-172873 Sentence denotes Future studies should assess the impact of HA mutations and sialyation of HA on the virus dependence on the NA activity and NAI susceptibility.
T158 172874-173128 Sentence denotes Interest in respiratory viruses has greatly expanded over the half year since the Fifth International Symposium on Respiratory Viral Infections largely as the result of the emergence of Severe Acute Respiratory Syndrome (SARS) due to a novel coronavirus.
T159 173129-173273 Sentence denotes Although SARS was not recognized at the time of the meeting, the symposium succeeded in reviewing recent advances in respiratory virus research.
T160 173274-173470 Sentence denotes The recent events associated with the SARS epidemic and outbreak of influenza A/H7N7 in Europe further emphasize the importance of planning ahead for pandemics and potential biologic catastrophes.
T161 173471-173634 Sentence denotes This meeting focused on the importance of pandemic planning for influenza and outlined areas in which vaccine development and implementation needs continued study.
T162 173635-173771 Sentence denotes The development of live-attenuated and recombinant vaccines holds great promise for preventing viral respiratory diseases in the future.
T163 173772-173892 Sentence denotes Clearly significant challenges lie ahead in the development of antivirals with activity against the respiratory viruses.
T164 173893-174095 Sentence denotes In addition to common respiratory viral pathogens like rhinoviruses and RSV, the threats of SARS and novel influenza viruses highlight the medical needs for antivirals for both prevention and treatment.