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PubMed:9834055 JSONTXT

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jnlpba-st-training

Id	Subject	Object	Predicate	Lexical cue
T1	0-4	protein	denotes	BASH
T2	8-32	protein	denotes	novel signaling molecule
T3	61-68	cell_type	denotes	B cells
T4	208-225	cell_type	denotes	B cell repertoire
T5	300-314	cell_type	denotes	bursal B cells
T6	336-350	protein	denotes	85-kDa protein
T7	363-367	protein	denotes	BASH
T8	369-405	protein	denotes	B cell adaptor containing SH2 domain
T9	422-447	protein	denotes	N-terminal acidic domains
T10	453-500	protein	denotes	SH2 domain-binding phosphotyrosine-based motifs
T11	504-523	protein	denotes	proline-rich domain
T12	531-552	protein	denotes	C-terminal SH2 domain
T13	554-558	protein	denotes	BASH
T14	602-608	protein	denotes	SLP-76
T15	644-647	protein	denotes	TCR
T16	669-673	protein	denotes	BASH
T17	715-733	protein	denotes	B cell Ag receptor
T18	735-738	protein	denotes	BCR
T19	775-778	protein	denotes	Syk
T20	783-786	protein	denotes	Lyn
T21	807-826	protein	denotes	signaling molecules
T22	837-840	protein	denotes	Syk
T23	847-877	protein	denotes	putative chicken Shc homologue
T24	897-901	protein	denotes	BASH
T25	932-937	protein	denotes	NF-AT
T26	960-963	protein	denotes	BCR
T27	1007-1011	protein	denotes	BASH
T28	1027-1030	protein	denotes	BCR

pubmed-sentences-benchmark

Id	Subject	Object	Predicate	Lexical cue
S1	0-95	Sentence	denotes	BASH, a novel signaling molecule preferentially expressed in B cells of the bursa of Fabricius.
S2	96-241	Sentence	denotes	The bursa of Fabricius is a gut-associated lymphoid organ that is essential for the generation of a diversified B cell repertoire in the chicken.
S3	242-315	Sentence	denotes	We describe here a novel gene preferentially expressed in bursal B cells.
S4	316-553	Sentence	denotes	The gene encodes an 85-kDa protein, designated BASH (B cell adaptor containing SH2 domain), that contains N-terminal acidic domains with SH2 domain-binding phosphotyrosine-based motifs, a proline-rich domain, and a C-terminal SH2 domain.
S5	554-668	Sentence	denotes	BASH shows a substantial sequence similarity to SLP-76, an adaptor protein functioning in TCR-signal transduction.
S6	669-878	Sentence	denotes	BASH becomes tyrosine-phosphorylated with the B cell Ag receptor (BCR) cross-link or by coexpression with Syk and Lyn and associates with signaling molecules including Syk and a putative chicken Shc homologue.
S7	879-978	Sentence	denotes	Overexpression of BASH results in suppression of the NF-AT activation induced by BCR-cross-linking.
S8	979-1126	Sentence	denotes	These findings suggest that BASH is involved in BCR-mediated signal transduction and could play a critical role in B cell development in the bursa.

genia-medco-coref

Id	Subject	Object	Predicate	Lexical cue
C1	0-4	NP	denotes	BASH
C4	72-94	NP	denotes	the bursa of Fabricius
C3	61-94	NP	denotes	B cells of the bursa of Fabricius
C2	6-94	NP	denotes	a novel signaling molecule preferentially expressed in B cells of the bursa of Fabricius
C5	96-118	NP	denotes	The bursa of Fabricius
C6	122-153	NP	denotes	a gut-associated lymphoid organ
C7	154-158	NP	denotes	that
C9	300-314	NP	denotes	bursal B cells
C8	259-314	NP	denotes	a novel gene preferentially expressed in bursal B cells
C10	316-324	NP	denotes	The gene
C11	333-350	NP	denotes	an 85-kDa protein
C12	363-406	NP	denotes	BASH (B cell adaptor containing SH2 domain)
C13	408-412	NP	denotes	that
C14	554-558	NP	denotes	BASH
C15	602-608	NP	denotes	SLP-76
C16	610-667	NP	denotes	an adaptor protein functioning in TCR-signal transduction
C17	669-673	NP	denotes	BASH
C18	775-778	NP	denotes	Syk
C19	837-840	NP	denotes	Syk
C20	897-901	NP	denotes	BASH
C21	1007-1011	NP	denotes	BASH
C22	1116-1125	NP	denotes	the bursa
R1	C2	C1	coref-appos	a novel signaling molecule preferentially expressed in B cells of the bursa of Fabricius,BASH
R2	C5	C4	coref-ident	The bursa of Fabricius,the bursa of Fabricius
R3	C7	C6	coref-relat	that,a gut-associated lymphoid organ
R4	C9	C3	coref-ident	bursal B cells,B cells of the bursa of Fabricius
R5	C10	C8	coref-ident	The gene,a novel gene preferentially expressed in bursal B cells
R6	C12	C1	coref-ident	BASH (B cell adaptor containing SH2 domain),BASH
R7	C13	C11	coref-relat	that,an 85-kDa protein
R8	C14	C12	coref-ident	BASH,BASH (B cell adaptor containing SH2 domain)
R9	C16	C15	coref-appos	an adaptor protein functioning in TCR-signal transduction,SLP-76
R10	C17	C14	coref-ident	BASH,BASH
R11	C19	C18	coref-ident	Syk,Syk
R12	C20	C17	coref-ident	BASH,BASH
R13	C21	C20	coref-ident	BASH,BASH
R14	C22	C5	coref-ident	the bursa,The bursa of Fabricius

GENIAcorpus

Id	Subject	Object	Predicate	Lexical cue
T1	0-4	protein_molecule	denotes	BASH
T2	8-32	protein_molecule	denotes	novel signaling molecule
T3	61-68	cell_type	denotes	B cells
T4	76-94	body_part	denotes	bursa of Fabricius
T5	100-118	body_part	denotes	bursa of Fabricius
T6	124-153	body_part	denotes	gut-associated lymphoid organ
T7	208-225	cell_type	denotes	B cell repertoire
T8	233-240	multi_cell	denotes	chicken
T9	300-306	cell_type	denotes	bursal
T10	307-314	cell_type	denotes	B cells
T11	336-350	protein_molecule	denotes	85-kDa protein
T12	363-367	protein_molecule	denotes	BASH
T13	369-405	protein_molecule	denotes	B cell adaptor containing SH2 domain
T14	422-447	protein_domain_or_region	denotes	N-terminal acidic domains
T15	504-511	amino_acid_monomer	denotes	proline
T16	531-552	protein_domain_or_region	denotes	C-terminal SH2 domain
T17	554-558	protein_molecule	denotes	BASH
T18	602-608	protein_molecule	denotes	SLP-76
T19	644-647	protein_family_or_group	denotes	TCR
T20	669-673	protein_molecule	denotes	BASH
T21	682-690	amino_acid_monomer	denotes	tyrosine
T22	715-733	protein_molecule	denotes	B cell Ag receptor
T23	735-738	protein_molecule	denotes	BCR
T24	775-778	protein_molecule	denotes	Syk
T25	783-786	protein_molecule	denotes	Lyn
T26	807-826	protein_family_or_group	denotes	signaling molecules
T27	837-840	protein_molecule	denotes	Syk
T28	847-877	protein_family_or_group	denotes	putative chicken Shc homologue
T29	897-901	protein_molecule	denotes	BASH
T30	932-937	protein_molecule	denotes	NF-AT
T31	960-963	protein_molecule	denotes	BCR
T32	1007-1011	protein_molecule	denotes	BASH
T33	1027-1030	protein_molecule	denotes	BCR
T34	1094-1112	other_name	denotes	B cell development
T35	1120-1125	tissue	denotes	bursa